Multiple sequence alignment - TraesCS2D01G234000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G234000 chr2D 100.000 3682 0 0 1 3682 211197569 211201250 0.000000e+00 6800.0
1 TraesCS2D01G234000 chr2D 89.071 183 13 4 184 360 161907016 161906835 1.720000e-53 220.0
2 TraesCS2D01G234000 chr2D 93.684 95 5 1 1 94 458488366 458488272 1.380000e-29 141.0
3 TraesCS2D01G234000 chr2D 85.965 114 12 4 1315 1425 482790023 482790135 6.460000e-23 119.0
4 TraesCS2D01G234000 chr2D 82.353 136 22 2 1330 1464 417625371 417625505 2.320000e-22 117.0
5 TraesCS2D01G234000 chr2D 88.542 96 11 0 1330 1425 636638927 636639022 2.320000e-22 117.0
6 TraesCS2D01G234000 chr2D 81.119 143 20 6 1548 1687 101872746 101872608 1.400000e-19 108.0
7 TraesCS2D01G234000 chr2D 89.286 84 9 0 1341 1424 555395479 555395562 5.030000e-19 106.0
8 TraesCS2D01G234000 chr2D 84.158 101 15 1 1548 1648 101956486 101956387 3.030000e-16 97.1
9 TraesCS2D01G234000 chr2D 96.296 54 2 0 2747 2800 403345132 403345079 5.060000e-14 89.8
10 TraesCS2D01G234000 chr2B 94.359 2872 120 20 843 3682 266962782 266959921 0.000000e+00 4368.0
11 TraesCS2D01G234000 chr2B 93.885 278 11 1 508 779 266963057 266962780 7.360000e-112 414.0
12 TraesCS2D01G234000 chr2B 93.750 96 4 2 1 95 43854039 43853945 3.830000e-30 143.0
13 TraesCS2D01G234000 chr2B 82.353 136 22 2 1330 1464 489849195 489849329 2.320000e-22 117.0
14 TraesCS2D01G234000 chr2B 88.542 96 11 0 1330 1425 567034936 567035031 2.320000e-22 117.0
15 TraesCS2D01G234000 chr2B 88.764 89 8 2 95 183 266963191 266963105 1.400000e-19 108.0
16 TraesCS2D01G234000 chr2A 95.086 1913 50 6 843 2737 265275458 265273572 0.000000e+00 2972.0
17 TraesCS2D01G234000 chr2A 93.056 288 18 2 2772 3059 265273263 265272978 1.580000e-113 420.0
18 TraesCS2D01G234000 chr2A 91.971 274 15 2 508 779 265275722 265275454 9.650000e-101 377.0
19 TraesCS2D01G234000 chr2A 92.063 252 18 2 3051 3301 265271777 265271527 1.630000e-93 353.0
20 TraesCS2D01G234000 chr2A 82.353 136 22 2 1330 1464 572487551 572487417 2.320000e-22 117.0
21 TraesCS2D01G234000 chr2A 88.542 96 11 0 1330 1425 625243577 625243672 2.320000e-22 117.0
22 TraesCS2D01G234000 chr2A 92.857 70 4 1 116 185 265331889 265331957 2.340000e-17 100.0
23 TraesCS2D01G234000 chr2A 79.720 143 22 6 1548 1687 100825947 100825809 3.030000e-16 97.1
24 TraesCS2D01G234000 chr5B 91.228 171 9 3 178 343 93472096 93472265 1.030000e-55 228.0
25 TraesCS2D01G234000 chr5B 92.053 151 12 0 359 509 546980224 546980074 2.880000e-51 213.0
26 TraesCS2D01G234000 chr5B 92.000 150 10 2 359 506 440027683 440027534 3.730000e-50 209.0
27 TraesCS2D01G234000 chr5B 91.391 151 13 0 359 509 546971811 546971661 1.340000e-49 207.0
28 TraesCS2D01G234000 chr5B 88.136 177 10 3 359 526 405794913 405794739 2.240000e-47 200.0
29 TraesCS2D01G234000 chr5B 92.708 96 6 1 1 95 394251764 394251859 1.780000e-28 137.0
30 TraesCS2D01G234000 chr5B 96.296 54 2 0 2746 2799 686200445 686200392 5.060000e-14 89.8
31 TraesCS2D01G234000 chr5A 90.395 177 12 2 183 354 651496987 651496811 1.030000e-55 228.0
32 TraesCS2D01G234000 chr5A 88.649 185 13 4 167 346 452111585 452111766 6.190000e-53 219.0
33 TraesCS2D01G234000 chr5A 94.643 56 2 1 2746 2800 66850026 66850081 6.550000e-13 86.1
34 TraesCS2D01G234000 chr5A 94.545 55 3 0 2746 2800 563175187 563175241 6.550000e-13 86.1
35 TraesCS2D01G234000 chr5A 95.122 41 2 0 353 393 529658312 529658352 8.530000e-07 65.8
36 TraesCS2D01G234000 chr3D 88.770 187 16 4 163 346 115051868 115051684 1.330000e-54 224.0
37 TraesCS2D01G234000 chr3D 82.946 129 18 4 1561 1687 253340073 253339947 3.010000e-21 113.0
38 TraesCS2D01G234000 chr6D 87.958 191 14 7 175 357 260024499 260024688 2.230000e-52 217.0
39 TraesCS2D01G234000 chr6D 86.170 94 12 1 1332 1424 352835663 352835756 2.340000e-17 100.0
40 TraesCS2D01G234000 chr6D 100.000 47 0 0 797 843 124537522 124537568 1.820000e-13 87.9
41 TraesCS2D01G234000 chr6D 100.000 47 0 0 797 843 129918963 129918917 1.820000e-13 87.9
42 TraesCS2D01G234000 chr6D 100.000 47 0 0 797 843 193791130 193791176 1.820000e-13 87.9
43 TraesCS2D01G234000 chr6D 95.556 45 2 0 2744 2788 18696493 18696449 5.100000e-09 73.1
44 TraesCS2D01G234000 chr6D 90.909 55 4 1 2747 2800 456406373 456406427 5.100000e-09 73.1
45 TraesCS2D01G234000 chr6D 90.566 53 3 2 2737 2787 346980440 346980492 6.600000e-08 69.4
46 TraesCS2D01G234000 chr6D 88.889 54 6 0 2747 2800 115771401 115771454 2.370000e-07 67.6
47 TraesCS2D01G234000 chr6D 97.143 35 1 0 2746 2780 299890406 299890372 3.970000e-05 60.2
48 TraesCS2D01G234000 chr6D 96.875 32 1 0 2747 2778 386894701 386894732 2.000000e-03 54.7
49 TraesCS2D01G234000 chr6A 87.958 191 14 7 175 357 370675615 370675426 2.230000e-52 217.0
50 TraesCS2D01G234000 chr6A 86.022 93 13 0 1332 1424 490301927 490302019 2.340000e-17 100.0
51 TraesCS2D01G234000 chr6A 94.915 59 0 3 2747 2803 555519589 555519646 5.060000e-14 89.8
52 TraesCS2D01G234000 chr6A 91.667 60 5 0 2733 2792 39864160 39864219 2.360000e-12 84.2
53 TraesCS2D01G234000 chr5D 89.326 178 12 4 184 356 322385097 322384922 2.230000e-52 217.0
54 TraesCS2D01G234000 chr5D 92.157 153 9 1 356 508 474212283 474212432 2.880000e-51 213.0
55 TraesCS2D01G234000 chr5D 91.333 150 13 0 356 505 391853275 391853126 4.820000e-49 206.0
56 TraesCS2D01G234000 chr5D 90.728 151 13 1 359 509 504629266 504629117 2.240000e-47 200.0
57 TraesCS2D01G234000 chr5D 90.728 151 13 1 359 509 504675104 504674955 2.240000e-47 200.0
58 TraesCS2D01G234000 chr5D 93.333 60 1 3 2743 2800 4258680 4258738 6.550000e-13 86.1
59 TraesCS2D01G234000 chr5D 92.593 54 4 0 2747 2800 246339102 246339049 1.100000e-10 78.7
60 TraesCS2D01G234000 chr5D 92.593 54 4 0 2747 2800 501203833 501203780 1.100000e-10 78.7
61 TraesCS2D01G234000 chr3B 86.869 198 16 7 177 368 486857463 486857656 2.880000e-51 213.0
62 TraesCS2D01G234000 chr3B 83.193 119 18 2 1561 1678 304277893 304278010 1.400000e-19 108.0
63 TraesCS2D01G234000 chr3B 90.476 63 4 2 2739 2800 545380110 545380171 8.470000e-12 82.4
64 TraesCS2D01G234000 chr7A 90.196 153 15 0 359 511 262469627 262469475 2.240000e-47 200.0
65 TraesCS2D01G234000 chr7A 81.818 132 18 4 1332 1460 653589647 653589775 5.030000e-19 106.0
66 TraesCS2D01G234000 chr1B 93.750 96 4 2 1 95 361133151 361133245 3.830000e-30 143.0
67 TraesCS2D01G234000 chr1B 93.617 94 5 1 1 93 612115216 612115123 4.960000e-29 139.0
68 TraesCS2D01G234000 chr1B 87.879 66 6 2 2736 2800 429910834 429910770 3.940000e-10 76.8
69 TraesCS2D01G234000 chr7D 92.000 100 7 1 1 99 340112224 340112125 4.960000e-29 139.0
70 TraesCS2D01G234000 chr7D 83.660 153 15 1 359 511 621735175 621735033 6.410000e-28 135.0
71 TraesCS2D01G234000 chr7D 81.818 132 18 4 1332 1460 566989848 566989976 5.030000e-19 106.0
72 TraesCS2D01G234000 chr7D 96.296 54 2 0 2747 2800 595351134 595351187 5.060000e-14 89.8
73 TraesCS2D01G234000 chr4B 91.919 99 7 1 1 98 637460497 637460399 1.780000e-28 137.0
74 TraesCS2D01G234000 chr4B 94.545 55 2 1 2747 2800 101712065 101712119 2.360000e-12 84.2
75 TraesCS2D01G234000 chr3A 92.708 96 6 1 1 95 726359469 726359374 1.780000e-28 137.0
76 TraesCS2D01G234000 chr3A 82.946 129 18 4 1561 1687 330698718 330698844 3.010000e-21 113.0
77 TraesCS2D01G234000 chr4D 91.000 100 8 1 1 99 325741300 325741201 2.310000e-27 134.0
78 TraesCS2D01G234000 chr4D 100.000 47 0 0 797 843 123511398 123511444 1.820000e-13 87.9
79 TraesCS2D01G234000 chr4D 100.000 47 0 0 797 843 123740895 123740941 1.820000e-13 87.9
80 TraesCS2D01G234000 chr4D 100.000 47 0 0 797 843 285092070 285092024 1.820000e-13 87.9
81 TraesCS2D01G234000 chr4D 94.545 55 2 1 2747 2800 218516283 218516229 2.360000e-12 84.2
82 TraesCS2D01G234000 chr4D 92.308 52 3 1 2750 2800 7644122 7644071 5.100000e-09 73.1
83 TraesCS2D01G234000 chr6B 81.746 126 23 0 1335 1460 526101156 526101031 5.030000e-19 106.0
84 TraesCS2D01G234000 chrUn 100.000 47 0 0 797 843 189412488 189412534 1.820000e-13 87.9
85 TraesCS2D01G234000 chrUn 100.000 47 0 0 797 843 399378433 399378479 1.820000e-13 87.9
86 TraesCS2D01G234000 chrUn 100.000 47 0 0 797 843 414339959 414340005 1.820000e-13 87.9
87 TraesCS2D01G234000 chrUn 92.683 41 2 1 2747 2787 94219331 94219292 1.430000e-04 58.4
88 TraesCS2D01G234000 chr1A 96.154 52 2 0 2749 2800 486417412 486417463 6.550000e-13 86.1
89 TraesCS2D01G234000 chr1A 87.692 65 7 1 2740 2803 486417501 486417437 1.420000e-09 75.0
90 TraesCS2D01G234000 chr1D 90.164 61 4 1 2740 2800 366474152 366474094 1.100000e-10 78.7
91 TraesCS2D01G234000 chr1D 92.453 53 4 0 2746 2798 408769268 408769320 3.940000e-10 76.8
92 TraesCS2D01G234000 chr1D 90.909 55 5 0 2746 2800 187190996 187190942 1.420000e-09 75.0
93 TraesCS2D01G234000 chr1D 95.122 41 2 0 2747 2787 473409102 473409062 8.530000e-07 65.8
94 TraesCS2D01G234000 chr1D 95.122 41 2 0 2747 2787 483674567 483674607 8.530000e-07 65.8
95 TraesCS2D01G234000 chr1D 87.037 54 7 0 2747 2800 322759608 322759555 1.100000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G234000 chr2D 211197569 211201250 3681 False 6800.0 6800 100.000 1 3682 1 chr2D.!!$F1 3681
1 TraesCS2D01G234000 chr2B 266959921 266963191 3270 True 1630.0 4368 92.336 95 3682 3 chr2B.!!$R2 3587
2 TraesCS2D01G234000 chr2A 265271527 265275722 4195 True 1030.5 2972 93.044 508 3301 4 chr2A.!!$R3 2793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 472 0.109342 ATAGCTGATTTGGAGGCCCG 59.891 55.0 0.0 0.0 34.29 6.13 F
487 488 0.670546 CCCGCCGCTATTGTCCATAG 60.671 60.0 0.0 0.0 38.41 2.23 F
1754 1777 0.478507 AGCAACCCTAGCAACAACCT 59.521 50.0 0.0 0.0 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1291 1306 0.039978 CGATACGCTTCAGATCCGCT 60.040 55.0 0.0 0.00 0.0 5.52 R
2079 2102 0.389391 CCGCGTACTCCATGGAAGAT 59.611 55.0 17.0 6.97 0.0 2.40 R
3454 4980 0.457851 AGGAGGAACGCTCTGATTCG 59.542 55.0 0.0 0.00 0.0 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.997340 TAGTCCCTAGTGGTCCCTCT 58.003 55.000 0.00 0.00 34.77 3.69
20 21 1.094269 AGTCCCTAGTGGTCCCTCTT 58.906 55.000 0.00 0.00 34.77 2.85
21 22 1.196012 GTCCCTAGTGGTCCCTCTTG 58.804 60.000 0.00 0.00 34.77 3.02
22 23 0.790993 TCCCTAGTGGTCCCTCTTGT 59.209 55.000 0.00 0.00 34.77 3.16
23 24 0.905357 CCCTAGTGGTCCCTCTTGTG 59.095 60.000 0.00 0.00 0.00 3.33
24 25 1.645710 CCTAGTGGTCCCTCTTGTGT 58.354 55.000 0.00 0.00 0.00 3.72
25 26 1.276421 CCTAGTGGTCCCTCTTGTGTG 59.724 57.143 0.00 0.00 0.00 3.82
26 27 1.276421 CTAGTGGTCCCTCTTGTGTGG 59.724 57.143 0.00 0.00 0.00 4.17
27 28 0.694444 AGTGGTCCCTCTTGTGTGGT 60.694 55.000 0.00 0.00 0.00 4.16
28 29 0.182775 GTGGTCCCTCTTGTGTGGTT 59.817 55.000 0.00 0.00 0.00 3.67
29 30 1.418637 GTGGTCCCTCTTGTGTGGTTA 59.581 52.381 0.00 0.00 0.00 2.85
30 31 2.128535 TGGTCCCTCTTGTGTGGTTAA 58.871 47.619 0.00 0.00 0.00 2.01
31 32 2.510382 TGGTCCCTCTTGTGTGGTTAAA 59.490 45.455 0.00 0.00 0.00 1.52
32 33 3.053544 TGGTCCCTCTTGTGTGGTTAAAA 60.054 43.478 0.00 0.00 0.00 1.52
33 34 3.955551 GGTCCCTCTTGTGTGGTTAAAAA 59.044 43.478 0.00 0.00 0.00 1.94
34 35 4.037565 GGTCCCTCTTGTGTGGTTAAAAAG 59.962 45.833 0.00 0.00 0.00 2.27
35 36 4.643334 GTCCCTCTTGTGTGGTTAAAAAGT 59.357 41.667 0.00 0.00 0.00 2.66
36 37 4.885325 TCCCTCTTGTGTGGTTAAAAAGTC 59.115 41.667 0.00 0.00 0.00 3.01
37 38 4.887655 CCCTCTTGTGTGGTTAAAAAGTCT 59.112 41.667 0.00 0.00 0.00 3.24
38 39 5.008712 CCCTCTTGTGTGGTTAAAAAGTCTC 59.991 44.000 0.00 0.00 0.00 3.36
39 40 5.823045 CCTCTTGTGTGGTTAAAAAGTCTCT 59.177 40.000 0.00 0.00 0.00 3.10
40 41 6.990349 CCTCTTGTGTGGTTAAAAAGTCTCTA 59.010 38.462 0.00 0.00 0.00 2.43
41 42 7.497909 CCTCTTGTGTGGTTAAAAAGTCTCTAA 59.502 37.037 0.00 0.00 0.00 2.10
42 43 8.433421 TCTTGTGTGGTTAAAAAGTCTCTAAG 57.567 34.615 0.00 0.00 0.00 2.18
43 44 8.262227 TCTTGTGTGGTTAAAAAGTCTCTAAGA 58.738 33.333 0.00 0.00 0.00 2.10
44 45 8.433421 TTGTGTGGTTAAAAAGTCTCTAAGAG 57.567 34.615 0.00 0.00 0.00 2.85
45 46 6.990349 TGTGTGGTTAAAAAGTCTCTAAGAGG 59.010 38.462 0.00 0.00 0.00 3.69
46 47 6.427242 GTGTGGTTAAAAAGTCTCTAAGAGGG 59.573 42.308 0.00 0.00 0.00 4.30
47 48 6.328148 TGTGGTTAAAAAGTCTCTAAGAGGGA 59.672 38.462 0.00 0.00 0.00 4.20
48 49 7.017254 TGTGGTTAAAAAGTCTCTAAGAGGGAT 59.983 37.037 0.00 0.00 0.00 3.85
49 50 7.883833 GTGGTTAAAAAGTCTCTAAGAGGGATT 59.116 37.037 0.00 0.00 0.00 3.01
50 51 8.445588 TGGTTAAAAAGTCTCTAAGAGGGATTT 58.554 33.333 0.00 0.00 0.00 2.17
51 52 9.298250 GGTTAAAAAGTCTCTAAGAGGGATTTT 57.702 33.333 0.00 0.00 0.00 1.82
74 75 7.797038 TTTTCTAGTCCTACACCAAAAAGTC 57.203 36.000 0.00 0.00 0.00 3.01
75 76 5.479124 TCTAGTCCTACACCAAAAAGTCC 57.521 43.478 0.00 0.00 0.00 3.85
76 77 3.503800 AGTCCTACACCAAAAAGTCCC 57.496 47.619 0.00 0.00 0.00 4.46
77 78 3.053826 AGTCCTACACCAAAAAGTCCCT 58.946 45.455 0.00 0.00 0.00 4.20
78 79 3.146847 GTCCTACACCAAAAAGTCCCTG 58.853 50.000 0.00 0.00 0.00 4.45
79 80 3.050089 TCCTACACCAAAAAGTCCCTGA 58.950 45.455 0.00 0.00 0.00 3.86
80 81 3.460340 TCCTACACCAAAAAGTCCCTGAA 59.540 43.478 0.00 0.00 0.00 3.02
81 82 4.079672 TCCTACACCAAAAAGTCCCTGAAA 60.080 41.667 0.00 0.00 0.00 2.69
82 83 4.647399 CCTACACCAAAAAGTCCCTGAAAA 59.353 41.667 0.00 0.00 0.00 2.29
83 84 4.465632 ACACCAAAAAGTCCCTGAAAAC 57.534 40.909 0.00 0.00 0.00 2.43
84 85 3.835395 ACACCAAAAAGTCCCTGAAAACA 59.165 39.130 0.00 0.00 0.00 2.83
85 86 4.284746 ACACCAAAAAGTCCCTGAAAACAA 59.715 37.500 0.00 0.00 0.00 2.83
86 87 5.221742 ACACCAAAAAGTCCCTGAAAACAAA 60.222 36.000 0.00 0.00 0.00 2.83
87 88 5.121611 CACCAAAAAGTCCCTGAAAACAAAC 59.878 40.000 0.00 0.00 0.00 2.93
88 89 5.221742 ACCAAAAAGTCCCTGAAAACAAACA 60.222 36.000 0.00 0.00 0.00 2.83
89 90 5.879777 CCAAAAAGTCCCTGAAAACAAACAT 59.120 36.000 0.00 0.00 0.00 2.71
90 91 6.037062 CCAAAAAGTCCCTGAAAACAAACATC 59.963 38.462 0.00 0.00 0.00 3.06
91 92 4.937201 AAGTCCCTGAAAACAAACATCC 57.063 40.909 0.00 0.00 0.00 3.51
92 93 3.230976 AGTCCCTGAAAACAAACATCCC 58.769 45.455 0.00 0.00 0.00 3.85
93 94 2.299013 GTCCCTGAAAACAAACATCCCC 59.701 50.000 0.00 0.00 0.00 4.81
110 111 5.970640 ACATCCCCTCAGAACTTTCCTATTA 59.029 40.000 0.00 0.00 0.00 0.98
111 112 6.100424 ACATCCCCTCAGAACTTTCCTATTAG 59.900 42.308 0.00 0.00 0.00 1.73
112 113 5.850278 TCCCCTCAGAACTTTCCTATTAGA 58.150 41.667 0.00 0.00 0.00 2.10
113 114 5.661759 TCCCCTCAGAACTTTCCTATTAGAC 59.338 44.000 0.00 0.00 0.00 2.59
114 115 5.425539 CCCCTCAGAACTTTCCTATTAGACA 59.574 44.000 0.00 0.00 0.00 3.41
143 144 9.628500 AGTTAGATGTTCCTTTTGTCTAAAACT 57.372 29.630 0.00 0.00 34.33 2.66
147 148 8.837389 AGATGTTCCTTTTGTCTAAAACTACAC 58.163 33.333 0.00 0.00 32.62 2.90
148 149 7.925043 TGTTCCTTTTGTCTAAAACTACACA 57.075 32.000 0.00 0.00 32.62 3.72
151 152 9.797556 GTTCCTTTTGTCTAAAACTACACATTT 57.202 29.630 0.00 0.00 32.62 2.32
167 168 4.895297 ACACATTTGAGAAAACTGATGGGT 59.105 37.500 0.00 0.00 0.00 4.51
183 184 8.605325 ACTGATGGGTAGTAACAGTATTAACT 57.395 34.615 0.00 0.00 39.52 2.24
185 186 9.962783 CTGATGGGTAGTAACAGTATTAACTAC 57.037 37.037 3.47 3.47 42.22 2.73
186 187 9.705103 TGATGGGTAGTAACAGTATTAACTACT 57.295 33.333 10.34 2.09 42.45 2.57
189 190 7.561356 TGGGTAGTAACAGTATTAACTACTCCC 59.439 40.741 8.46 4.99 42.66 4.30
190 191 7.782168 GGGTAGTAACAGTATTAACTACTCCCT 59.218 40.741 10.34 0.00 42.45 4.20
191 192 8.845227 GGTAGTAACAGTATTAACTACTCCCTC 58.155 40.741 10.34 0.00 42.45 4.30
192 193 7.894753 AGTAACAGTATTAACTACTCCCTCC 57.105 40.000 0.00 0.00 38.68 4.30
193 194 5.848833 AACAGTATTAACTACTCCCTCCG 57.151 43.478 0.00 0.00 38.68 4.63
195 196 5.267587 ACAGTATTAACTACTCCCTCCGTT 58.732 41.667 0.00 0.00 38.68 4.44
196 197 5.359292 ACAGTATTAACTACTCCCTCCGTTC 59.641 44.000 0.00 0.00 38.68 3.95
197 198 4.892345 AGTATTAACTACTCCCTCCGTTCC 59.108 45.833 0.00 0.00 35.73 3.62
201 202 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
204 205 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
205 206 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
207 208 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
208 209 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
209 210 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
210 211 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
211 212 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
232 233 9.996554 TGTCTTTATAGAGATTTCAACAAGTGA 57.003 29.630 0.00 0.00 0.00 3.41
241 242 9.376075 AGAGATTTCAACAAGTGACTACATATG 57.624 33.333 0.00 0.00 35.39 1.78
242 243 9.371136 GAGATTTCAACAAGTGACTACATATGA 57.629 33.333 10.38 0.00 35.39 2.15
243 244 9.725019 AGATTTCAACAAGTGACTACATATGAA 57.275 29.630 10.38 0.00 35.39 2.57
244 245 9.979270 GATTTCAACAAGTGACTACATATGAAG 57.021 33.333 10.38 0.00 35.39 3.02
245 246 6.968131 TCAACAAGTGACTACATATGAAGC 57.032 37.500 10.38 0.00 0.00 3.86
246 247 6.463360 TCAACAAGTGACTACATATGAAGCA 58.537 36.000 10.38 0.00 0.00 3.91
247 248 6.934083 TCAACAAGTGACTACATATGAAGCAA 59.066 34.615 10.38 0.00 0.00 3.91
248 249 7.443879 TCAACAAGTGACTACATATGAAGCAAA 59.556 33.333 10.38 0.00 0.00 3.68
249 250 7.744087 ACAAGTGACTACATATGAAGCAAAA 57.256 32.000 10.38 0.00 0.00 2.44
250 251 8.340618 ACAAGTGACTACATATGAAGCAAAAT 57.659 30.769 10.38 0.00 0.00 1.82
251 252 8.239314 ACAAGTGACTACATATGAAGCAAAATG 58.761 33.333 10.38 3.10 0.00 2.32
252 253 8.453320 CAAGTGACTACATATGAAGCAAAATGA 58.547 33.333 10.38 0.00 0.00 2.57
253 254 8.206325 AGTGACTACATATGAAGCAAAATGAG 57.794 34.615 10.38 0.00 0.00 2.90
254 255 7.826252 AGTGACTACATATGAAGCAAAATGAGT 59.174 33.333 10.38 0.00 0.00 3.41
255 256 7.907045 GTGACTACATATGAAGCAAAATGAGTG 59.093 37.037 10.38 0.00 0.00 3.51
256 257 7.823799 TGACTACATATGAAGCAAAATGAGTGA 59.176 33.333 10.38 0.00 0.00 3.41
257 258 8.565896 ACTACATATGAAGCAAAATGAGTGAA 57.434 30.769 10.38 0.00 0.00 3.18
258 259 9.182214 ACTACATATGAAGCAAAATGAGTGAAT 57.818 29.630 10.38 0.00 0.00 2.57
259 260 9.661187 CTACATATGAAGCAAAATGAGTGAATC 57.339 33.333 10.38 0.00 0.00 2.52
260 261 8.289939 ACATATGAAGCAAAATGAGTGAATCT 57.710 30.769 10.38 0.00 0.00 2.40
261 262 9.399797 ACATATGAAGCAAAATGAGTGAATCTA 57.600 29.630 10.38 0.00 0.00 1.98
262 263 9.661187 CATATGAAGCAAAATGAGTGAATCTAC 57.339 33.333 0.00 0.00 0.00 2.59
263 264 7.692460 ATGAAGCAAAATGAGTGAATCTACA 57.308 32.000 0.00 0.00 0.00 2.74
264 265 6.902341 TGAAGCAAAATGAGTGAATCTACAC 58.098 36.000 0.00 0.00 40.60 2.90
297 298 6.791867 TGTCTATATCCATATGTGGTAGGC 57.208 41.667 8.51 5.45 46.16 3.93
298 299 5.661312 TGTCTATATCCATATGTGGTAGGCC 59.339 44.000 8.51 0.00 46.16 5.19
299 300 5.661312 GTCTATATCCATATGTGGTAGGCCA 59.339 44.000 5.01 0.00 46.16 5.36
315 316 8.887264 TGGTAGGCCATTTAAAATCTCTAAAA 57.113 30.769 5.01 0.00 40.46 1.52
316 317 8.745590 TGGTAGGCCATTTAAAATCTCTAAAAC 58.254 33.333 5.01 0.00 40.46 2.43
317 318 8.745590 GGTAGGCCATTTAAAATCTCTAAAACA 58.254 33.333 5.01 0.00 34.09 2.83
318 319 9.569167 GTAGGCCATTTAAAATCTCTAAAACAC 57.431 33.333 5.01 0.00 0.00 3.32
319 320 8.189119 AGGCCATTTAAAATCTCTAAAACACA 57.811 30.769 5.01 0.00 0.00 3.72
320 321 8.646900 AGGCCATTTAAAATCTCTAAAACACAA 58.353 29.630 5.01 0.00 0.00 3.33
321 322 9.267084 GGCCATTTAAAATCTCTAAAACACAAA 57.733 29.630 0.00 0.00 0.00 2.83
329 330 9.981114 AAAATCTCTAAAACACAAATACTTGGG 57.019 29.630 0.00 0.00 42.12 4.12
330 331 8.934023 AATCTCTAAAACACAAATACTTGGGA 57.066 30.769 0.00 0.00 38.31 4.37
331 332 8.934023 ATCTCTAAAACACAAATACTTGGGAA 57.066 30.769 0.00 0.00 38.31 3.97
332 333 8.161699 TCTCTAAAACACAAATACTTGGGAAC 57.838 34.615 0.00 0.00 38.31 3.62
333 334 6.961576 TCTAAAACACAAATACTTGGGAACG 58.038 36.000 0.00 0.00 38.31 3.95
334 335 4.577834 AAACACAAATACTTGGGAACGG 57.422 40.909 0.00 0.00 38.31 4.44
335 336 3.495434 ACACAAATACTTGGGAACGGA 57.505 42.857 0.00 0.00 38.31 4.69
336 337 3.408634 ACACAAATACTTGGGAACGGAG 58.591 45.455 0.00 0.00 38.31 4.63
337 338 2.747446 CACAAATACTTGGGAACGGAGG 59.253 50.000 0.00 0.00 38.31 4.30
338 339 2.640826 ACAAATACTTGGGAACGGAGGA 59.359 45.455 0.00 0.00 36.82 3.71
339 340 3.073356 ACAAATACTTGGGAACGGAGGAA 59.927 43.478 0.00 0.00 36.82 3.36
340 341 3.629142 AATACTTGGGAACGGAGGAAG 57.371 47.619 0.00 0.00 0.00 3.46
341 342 2.019807 TACTTGGGAACGGAGGAAGT 57.980 50.000 0.00 0.00 0.00 3.01
342 343 2.019807 ACTTGGGAACGGAGGAAGTA 57.980 50.000 0.00 0.00 0.00 2.24
343 344 2.332117 ACTTGGGAACGGAGGAAGTAA 58.668 47.619 0.00 0.00 0.00 2.24
344 345 2.038164 ACTTGGGAACGGAGGAAGTAAC 59.962 50.000 0.00 0.00 0.00 2.50
345 346 1.719529 TGGGAACGGAGGAAGTAACA 58.280 50.000 0.00 0.00 0.00 2.41
346 347 1.345415 TGGGAACGGAGGAAGTAACAC 59.655 52.381 0.00 0.00 0.00 3.32
347 348 1.345415 GGGAACGGAGGAAGTAACACA 59.655 52.381 0.00 0.00 0.00 3.72
348 349 2.027469 GGGAACGGAGGAAGTAACACAT 60.027 50.000 0.00 0.00 0.00 3.21
349 350 3.196254 GGGAACGGAGGAAGTAACACATA 59.804 47.826 0.00 0.00 0.00 2.29
350 351 4.141779 GGGAACGGAGGAAGTAACACATAT 60.142 45.833 0.00 0.00 0.00 1.78
351 352 5.069516 GGGAACGGAGGAAGTAACACATATA 59.930 44.000 0.00 0.00 0.00 0.86
352 353 6.239515 GGGAACGGAGGAAGTAACACATATAT 60.240 42.308 0.00 0.00 0.00 0.86
353 354 6.645415 GGAACGGAGGAAGTAACACATATATG 59.355 42.308 11.29 11.29 0.00 1.78
354 355 6.726490 ACGGAGGAAGTAACACATATATGT 57.274 37.500 12.75 12.75 42.84 2.29
355 356 7.828508 ACGGAGGAAGTAACACATATATGTA 57.171 36.000 17.86 0.24 39.39 2.29
356 357 8.418597 ACGGAGGAAGTAACACATATATGTAT 57.581 34.615 17.86 12.26 39.39 2.29
357 358 8.867097 ACGGAGGAAGTAACACATATATGTATT 58.133 33.333 17.86 15.61 39.39 1.89
377 378 9.734984 ATGTATTATAGTTTTAAATAGCCGGCT 57.265 29.630 34.85 34.85 0.00 5.52
382 383 7.845066 ATAGTTTTAAATAGCCGGCTATAGC 57.155 36.000 41.53 29.09 38.20 2.97
383 384 5.866207 AGTTTTAAATAGCCGGCTATAGCT 58.134 37.500 41.53 30.55 43.20 3.32
384 385 5.932883 AGTTTTAAATAGCCGGCTATAGCTC 59.067 40.000 41.53 28.58 40.56 4.09
385 386 5.740290 TTTAAATAGCCGGCTATAGCTCT 57.260 39.130 41.53 26.79 40.56 4.09
386 387 3.601443 AAATAGCCGGCTATAGCTCTG 57.399 47.619 41.53 13.61 40.56 3.35
387 388 0.820871 ATAGCCGGCTATAGCTCTGC 59.179 55.000 41.03 21.05 40.56 4.26
388 389 0.251386 TAGCCGGCTATAGCTCTGCT 60.251 55.000 32.24 27.03 43.41 4.24
389 390 0.251386 AGCCGGCTATAGCTCTGCTA 60.251 55.000 31.86 1.60 45.55 3.49
397 398 2.268022 TAGCTCTGCTATAGGCCGC 58.732 57.895 0.00 0.00 40.44 6.53
398 399 1.251527 TAGCTCTGCTATAGGCCGCC 61.252 60.000 0.00 0.00 40.44 6.13
399 400 2.872388 GCTCTGCTATAGGCCGCCA 61.872 63.158 13.15 0.00 40.92 5.69
400 401 1.978473 CTCTGCTATAGGCCGCCAT 59.022 57.895 13.15 5.91 40.92 4.40
401 402 1.186200 CTCTGCTATAGGCCGCCATA 58.814 55.000 13.15 6.77 40.92 2.74
402 403 1.135915 CTCTGCTATAGGCCGCCATAG 59.864 57.143 13.15 16.17 40.92 2.23
403 404 0.460987 CTGCTATAGGCCGCCATAGC 60.461 60.000 28.84 28.84 46.44 2.97
410 411 3.918544 GCCGCCATAGCCTTTTCA 58.081 55.556 0.00 0.00 34.57 2.69
411 412 1.729881 GCCGCCATAGCCTTTTCAG 59.270 57.895 0.00 0.00 34.57 3.02
412 413 1.729881 CCGCCATAGCCTTTTCAGC 59.270 57.895 0.00 0.00 34.57 4.26
413 414 1.031571 CCGCCATAGCCTTTTCAGCA 61.032 55.000 0.00 0.00 34.57 4.41
414 415 0.379669 CGCCATAGCCTTTTCAGCAG 59.620 55.000 0.00 0.00 34.57 4.24
415 416 0.743097 GCCATAGCCTTTTCAGCAGG 59.257 55.000 0.00 0.00 34.08 4.85
420 421 2.968206 CCTTTTCAGCAGGCTGCC 59.032 61.111 34.33 17.49 46.52 4.85
421 422 2.564975 CTTTTCAGCAGGCTGCCG 59.435 61.111 34.33 25.78 46.52 5.69
422 423 3.621892 CTTTTCAGCAGGCTGCCGC 62.622 63.158 34.33 22.09 46.52 6.53
423 424 4.648626 TTTCAGCAGGCTGCCGCT 62.649 61.111 34.33 25.11 46.52 5.52
424 425 2.746412 TTTTCAGCAGGCTGCCGCTA 62.746 55.000 34.33 16.07 46.52 4.26
425 426 2.746412 TTTCAGCAGGCTGCCGCTAA 62.746 55.000 34.33 20.24 46.52 3.09
426 427 2.746412 TTCAGCAGGCTGCCGCTAAA 62.746 55.000 34.33 21.55 46.52 1.85
427 428 2.117156 CAGCAGGCTGCCGCTAAAT 61.117 57.895 34.33 12.74 46.52 1.40
428 429 2.117156 AGCAGGCTGCCGCTAAATG 61.117 57.895 34.33 15.59 46.52 2.32
429 430 3.113745 CAGGCTGCCGCTAAATGG 58.886 61.111 13.96 0.00 36.09 3.16
430 431 1.750399 CAGGCTGCCGCTAAATGGT 60.750 57.895 13.96 0.00 36.09 3.55
431 432 1.452108 AGGCTGCCGCTAAATGGTC 60.452 57.895 13.96 0.00 36.09 4.02
432 433 2.709475 GCTGCCGCTAAATGGTCG 59.291 61.111 0.00 0.00 0.00 4.79
433 434 2.709475 CTGCCGCTAAATGGTCGC 59.291 61.111 0.00 0.00 0.00 5.19
434 435 2.822255 TGCCGCTAAATGGTCGCC 60.822 61.111 0.00 0.00 0.00 5.54
435 436 2.513897 GCCGCTAAATGGTCGCCT 60.514 61.111 0.00 0.00 0.00 5.52
436 437 2.112815 GCCGCTAAATGGTCGCCTT 61.113 57.895 0.00 0.00 0.00 4.35
437 438 2.014594 CCGCTAAATGGTCGCCTTC 58.985 57.895 0.00 0.00 0.00 3.46
438 439 0.742990 CCGCTAAATGGTCGCCTTCA 60.743 55.000 0.00 0.00 0.00 3.02
439 440 0.373716 CGCTAAATGGTCGCCTTCAC 59.626 55.000 0.00 0.00 0.00 3.18
440 441 1.448985 GCTAAATGGTCGCCTTCACA 58.551 50.000 0.00 0.00 0.00 3.58
441 442 1.810151 GCTAAATGGTCGCCTTCACAA 59.190 47.619 0.00 0.00 0.00 3.33
442 443 2.227865 GCTAAATGGTCGCCTTCACAAA 59.772 45.455 0.00 0.00 0.00 2.83
443 444 3.119495 GCTAAATGGTCGCCTTCACAAAT 60.119 43.478 0.00 0.00 0.00 2.32
444 445 4.095782 GCTAAATGGTCGCCTTCACAAATA 59.904 41.667 0.00 0.00 0.00 1.40
445 446 4.701956 AAATGGTCGCCTTCACAAATAG 57.298 40.909 0.00 0.00 0.00 1.73
446 447 1.448985 TGGTCGCCTTCACAAATAGC 58.551 50.000 0.00 0.00 0.00 2.97
447 448 0.733150 GGTCGCCTTCACAAATAGCC 59.267 55.000 0.00 0.00 0.00 3.93
448 449 1.679032 GGTCGCCTTCACAAATAGCCT 60.679 52.381 0.00 0.00 0.00 4.58
449 450 2.419574 GGTCGCCTTCACAAATAGCCTA 60.420 50.000 0.00 0.00 0.00 3.93
450 451 3.267483 GTCGCCTTCACAAATAGCCTAA 58.733 45.455 0.00 0.00 0.00 2.69
451 452 3.877508 GTCGCCTTCACAAATAGCCTAAT 59.122 43.478 0.00 0.00 0.00 1.73
452 453 5.054477 GTCGCCTTCACAAATAGCCTAATA 58.946 41.667 0.00 0.00 0.00 0.98
453 454 5.701290 GTCGCCTTCACAAATAGCCTAATAT 59.299 40.000 0.00 0.00 0.00 1.28
454 455 6.872020 GTCGCCTTCACAAATAGCCTAATATA 59.128 38.462 0.00 0.00 0.00 0.86
455 456 7.063544 GTCGCCTTCACAAATAGCCTAATATAG 59.936 40.741 0.00 0.00 0.00 1.31
456 457 6.183360 CGCCTTCACAAATAGCCTAATATAGC 60.183 42.308 0.00 0.00 0.00 2.97
457 458 6.881602 GCCTTCACAAATAGCCTAATATAGCT 59.118 38.462 0.00 0.00 43.20 3.32
458 459 7.148340 GCCTTCACAAATAGCCTAATATAGCTG 60.148 40.741 0.00 0.00 40.28 4.24
459 460 8.097038 CCTTCACAAATAGCCTAATATAGCTGA 58.903 37.037 0.00 0.00 40.28 4.26
460 461 9.664332 CTTCACAAATAGCCTAATATAGCTGAT 57.336 33.333 0.00 0.00 40.28 2.90
464 465 9.236006 ACAAATAGCCTAATATAGCTGATTTGG 57.764 33.333 21.63 14.99 40.14 3.28
465 466 9.453572 CAAATAGCCTAATATAGCTGATTTGGA 57.546 33.333 20.33 7.33 40.28 3.53
466 467 9.678260 AAATAGCCTAATATAGCTGATTTGGAG 57.322 33.333 20.33 6.29 40.28 3.86
467 468 6.059787 AGCCTAATATAGCTGATTTGGAGG 57.940 41.667 20.33 13.37 38.11 4.30
468 469 4.637977 GCCTAATATAGCTGATTTGGAGGC 59.362 45.833 20.33 17.47 39.03 4.70
469 470 5.189180 CCTAATATAGCTGATTTGGAGGCC 58.811 45.833 14.45 0.00 32.77 5.19
470 471 3.728385 ATATAGCTGATTTGGAGGCCC 57.272 47.619 0.00 0.00 0.00 5.80
471 472 0.109342 ATAGCTGATTTGGAGGCCCG 59.891 55.000 0.00 0.00 34.29 6.13
472 473 2.608970 TAGCTGATTTGGAGGCCCGC 62.609 60.000 0.00 0.00 34.29 6.13
473 474 2.830370 CTGATTTGGAGGCCCGCC 60.830 66.667 0.00 1.12 34.29 6.13
474 475 4.794648 TGATTTGGAGGCCCGCCG 62.795 66.667 0.00 0.00 41.95 6.46
481 482 4.547367 GAGGCCCGCCGCTATTGT 62.547 66.667 0.00 0.00 41.95 2.71
482 483 4.547367 AGGCCCGCCGCTATTGTC 62.547 66.667 0.00 0.00 41.95 3.18
484 485 4.849310 GCCCGCCGCTATTGTCCA 62.849 66.667 0.00 0.00 0.00 4.02
485 486 2.111043 CCCGCCGCTATTGTCCAT 59.889 61.111 0.00 0.00 0.00 3.41
486 487 1.369692 CCCGCCGCTATTGTCCATA 59.630 57.895 0.00 0.00 0.00 2.74
487 488 0.670546 CCCGCCGCTATTGTCCATAG 60.671 60.000 0.00 0.00 38.41 2.23
495 496 3.895232 CTATTGTCCATAGCCCGCTAT 57.105 47.619 3.31 3.31 39.60 2.97
496 497 4.207891 CTATTGTCCATAGCCCGCTATT 57.792 45.455 6.48 0.00 37.16 1.73
497 498 3.508845 ATTGTCCATAGCCCGCTATTT 57.491 42.857 6.48 0.00 37.16 1.40
498 499 4.634012 ATTGTCCATAGCCCGCTATTTA 57.366 40.909 6.48 0.00 37.16 1.40
499 500 4.425180 TTGTCCATAGCCCGCTATTTAA 57.575 40.909 6.48 0.00 37.16 1.52
500 501 4.425180 TGTCCATAGCCCGCTATTTAAA 57.575 40.909 6.48 0.00 37.16 1.52
501 502 4.783055 TGTCCATAGCCCGCTATTTAAAA 58.217 39.130 6.48 0.00 37.16 1.52
502 503 4.577283 TGTCCATAGCCCGCTATTTAAAAC 59.423 41.667 6.48 2.70 37.16 2.43
503 504 4.577283 GTCCATAGCCCGCTATTTAAAACA 59.423 41.667 6.48 0.00 37.16 2.83
504 505 5.240844 GTCCATAGCCCGCTATTTAAAACAT 59.759 40.000 6.48 0.00 37.16 2.71
505 506 5.830991 TCCATAGCCCGCTATTTAAAACATT 59.169 36.000 6.48 0.00 37.16 2.71
506 507 5.920273 CCATAGCCCGCTATTTAAAACATTG 59.080 40.000 6.48 0.00 37.16 2.82
578 585 6.247676 TGGTATATATGCCTGCAACAATGAT 58.752 36.000 19.21 0.00 33.30 2.45
760 769 3.181503 CGCTAGCTCATGATTTGCACTTT 60.182 43.478 13.93 0.00 0.00 2.66
762 773 4.096081 GCTAGCTCATGATTTGCACTTTCT 59.904 41.667 7.70 0.00 0.00 2.52
767 778 5.335426 GCTCATGATTTGCACTTTCTGAGAA 60.335 40.000 15.33 0.00 32.55 2.87
774 785 4.944619 TGCACTTTCTGAGAAAGAGAGA 57.055 40.909 34.30 17.58 39.07 3.10
775 786 4.880759 TGCACTTTCTGAGAAAGAGAGAG 58.119 43.478 34.30 20.41 39.07 3.20
776 787 4.586421 TGCACTTTCTGAGAAAGAGAGAGA 59.414 41.667 34.30 13.46 39.07 3.10
777 788 5.163513 GCACTTTCTGAGAAAGAGAGAGAG 58.836 45.833 34.30 17.70 39.07 3.20
778 789 5.048083 GCACTTTCTGAGAAAGAGAGAGAGA 60.048 44.000 34.30 0.00 39.07 3.10
779 790 6.516527 GCACTTTCTGAGAAAGAGAGAGAGAA 60.517 42.308 34.30 0.00 39.07 2.87
780 791 7.432869 CACTTTCTGAGAAAGAGAGAGAGAAA 58.567 38.462 34.30 0.00 39.07 2.52
781 792 7.596248 CACTTTCTGAGAAAGAGAGAGAGAAAG 59.404 40.741 34.30 10.40 45.36 2.62
782 793 7.505585 ACTTTCTGAGAAAGAGAGAGAGAAAGA 59.494 37.037 34.30 0.00 43.82 2.52
783 794 7.452880 TTCTGAGAAAGAGAGAGAGAAAGAG 57.547 40.000 0.00 0.00 35.91 2.85
784 795 6.778821 TCTGAGAAAGAGAGAGAGAAAGAGA 58.221 40.000 0.00 0.00 0.00 3.10
785 796 7.230747 TCTGAGAAAGAGAGAGAGAAAGAGAA 58.769 38.462 0.00 0.00 0.00 2.87
786 797 7.723616 TCTGAGAAAGAGAGAGAGAAAGAGAAA 59.276 37.037 0.00 0.00 0.00 2.52
787 798 7.885297 TGAGAAAGAGAGAGAGAAAGAGAAAG 58.115 38.462 0.00 0.00 0.00 2.62
788 799 7.723616 TGAGAAAGAGAGAGAGAAAGAGAAAGA 59.276 37.037 0.00 0.00 0.00 2.52
789 800 8.115490 AGAAAGAGAGAGAGAAAGAGAAAGAG 57.885 38.462 0.00 0.00 0.00 2.85
790 801 7.944554 AGAAAGAGAGAGAGAAAGAGAAAGAGA 59.055 37.037 0.00 0.00 0.00 3.10
791 802 8.477419 AAAGAGAGAGAGAAAGAGAAAGAGAA 57.523 34.615 0.00 0.00 0.00 2.87
792 803 8.477419 AAGAGAGAGAGAAAGAGAAAGAGAAA 57.523 34.615 0.00 0.00 0.00 2.52
793 804 8.115490 AGAGAGAGAGAAAGAGAAAGAGAAAG 57.885 38.462 0.00 0.00 0.00 2.62
794 805 7.944554 AGAGAGAGAGAAAGAGAAAGAGAAAGA 59.055 37.037 0.00 0.00 0.00 2.52
795 806 8.115490 AGAGAGAGAAAGAGAAAGAGAAAGAG 57.885 38.462 0.00 0.00 0.00 2.85
796 807 7.944554 AGAGAGAGAAAGAGAAAGAGAAAGAGA 59.055 37.037 0.00 0.00 0.00 3.10
797 808 8.115490 AGAGAGAAAGAGAAAGAGAAAGAGAG 57.885 38.462 0.00 0.00 0.00 3.20
798 809 6.691508 AGAGAAAGAGAAAGAGAAAGAGAGC 58.308 40.000 0.00 0.00 0.00 4.09
799 810 6.267471 AGAGAAAGAGAAAGAGAAAGAGAGCA 59.733 38.462 0.00 0.00 0.00 4.26
800 811 6.825610 AGAAAGAGAAAGAGAAAGAGAGCAA 58.174 36.000 0.00 0.00 0.00 3.91
801 812 7.278875 AGAAAGAGAAAGAGAAAGAGAGCAAA 58.721 34.615 0.00 0.00 0.00 3.68
802 813 7.772757 AGAAAGAGAAAGAGAAAGAGAGCAAAA 59.227 33.333 0.00 0.00 0.00 2.44
803 814 6.859420 AGAGAAAGAGAAAGAGAGCAAAAC 57.141 37.500 0.00 0.00 0.00 2.43
804 815 5.465056 AGAGAAAGAGAAAGAGAGCAAAACG 59.535 40.000 0.00 0.00 0.00 3.60
805 816 4.513318 AGAAAGAGAAAGAGAGCAAAACGG 59.487 41.667 0.00 0.00 0.00 4.44
806 817 3.477210 AGAGAAAGAGAGCAAAACGGT 57.523 42.857 0.00 0.00 0.00 4.83
807 818 3.134458 AGAGAAAGAGAGCAAAACGGTG 58.866 45.455 0.00 0.00 0.00 4.94
808 819 2.872858 GAGAAAGAGAGCAAAACGGTGT 59.127 45.455 0.00 0.00 0.00 4.16
809 820 2.872858 AGAAAGAGAGCAAAACGGTGTC 59.127 45.455 0.00 0.00 35.69 3.67
810 821 2.622064 AAGAGAGCAAAACGGTGTCT 57.378 45.000 0.00 0.00 46.90 3.41
811 822 2.622064 AGAGAGCAAAACGGTGTCTT 57.378 45.000 0.00 0.00 42.70 3.01
812 823 2.213499 AGAGAGCAAAACGGTGTCTTG 58.787 47.619 0.00 0.00 42.70 3.02
813 824 2.158957 AGAGAGCAAAACGGTGTCTTGA 60.159 45.455 0.00 0.00 42.70 3.02
814 825 1.940613 AGAGCAAAACGGTGTCTTGAC 59.059 47.619 0.00 0.00 0.00 3.18
815 826 1.940613 GAGCAAAACGGTGTCTTGACT 59.059 47.619 2.35 0.69 0.00 3.41
816 827 1.940613 AGCAAAACGGTGTCTTGACTC 59.059 47.619 2.35 0.00 0.00 3.36
817 828 1.940613 GCAAAACGGTGTCTTGACTCT 59.059 47.619 2.35 0.00 0.00 3.24
818 829 2.032808 GCAAAACGGTGTCTTGACTCTC 60.033 50.000 2.35 0.00 0.00 3.20
819 830 3.194861 CAAAACGGTGTCTTGACTCTCA 58.805 45.455 2.35 0.00 0.00 3.27
820 831 3.536956 AAACGGTGTCTTGACTCTCAA 57.463 42.857 2.35 0.00 34.79 3.02
831 842 4.521130 TTGACTCTCAAGAATAGTGCGT 57.479 40.909 0.00 0.00 31.83 5.24
832 843 3.838120 TGACTCTCAAGAATAGTGCGTG 58.162 45.455 0.00 0.00 0.00 5.34
833 844 3.255888 TGACTCTCAAGAATAGTGCGTGT 59.744 43.478 0.00 0.00 0.00 4.49
834 845 4.238514 GACTCTCAAGAATAGTGCGTGTT 58.761 43.478 0.00 0.00 0.00 3.32
835 846 5.048294 TGACTCTCAAGAATAGTGCGTGTTA 60.048 40.000 0.00 0.00 0.00 2.41
836 847 5.779922 ACTCTCAAGAATAGTGCGTGTTAA 58.220 37.500 0.00 0.00 0.00 2.01
837 848 6.398918 ACTCTCAAGAATAGTGCGTGTTAAT 58.601 36.000 0.00 0.00 0.00 1.40
838 849 7.544622 ACTCTCAAGAATAGTGCGTGTTAATA 58.455 34.615 0.00 0.00 0.00 0.98
839 850 8.198109 ACTCTCAAGAATAGTGCGTGTTAATAT 58.802 33.333 0.00 0.00 0.00 1.28
840 851 8.575565 TCTCAAGAATAGTGCGTGTTAATATC 57.424 34.615 0.00 0.00 0.00 1.63
841 852 7.652105 TCTCAAGAATAGTGCGTGTTAATATCC 59.348 37.037 0.00 0.00 0.00 2.59
920 935 3.680777 AACTTCCTCCAACCTTTTCCA 57.319 42.857 0.00 0.00 0.00 3.53
1291 1306 6.094186 CGTCCATCCATCTCGAATTCTAGATA 59.906 42.308 19.02 8.16 31.25 1.98
1303 1318 6.027131 CGAATTCTAGATAGCGGATCTGAAG 58.973 44.000 5.48 5.20 45.05 3.02
1477 1492 4.687483 GGCAACCGGTATACATACATACAC 59.313 45.833 8.00 0.00 33.77 2.90
1498 1521 1.215244 CATACATGCGTCTGCCTCAG 58.785 55.000 0.00 0.00 41.78 3.35
1533 1556 2.876091 TGACACGATTGATCCGACTTC 58.124 47.619 0.00 0.00 0.00 3.01
1754 1777 0.478507 AGCAACCCTAGCAACAACCT 59.521 50.000 0.00 0.00 0.00 3.50
1833 1856 1.685224 GTTCACCATCAGCTCCCCA 59.315 57.895 0.00 0.00 0.00 4.96
1968 1991 4.753662 CTGGCCATGCAGCAGGGT 62.754 66.667 26.47 0.00 37.65 4.34
2079 2102 5.084818 TGAATGGCTCTTCTAATTCGTCA 57.915 39.130 0.00 0.00 32.78 4.35
2202 2225 4.047125 CCAGGAATGGGTGCCGGT 62.047 66.667 1.90 0.00 0.00 5.28
2382 2411 1.511768 GGCGTTCGACCTAGAGCTT 59.488 57.895 0.00 0.00 0.00 3.74
2492 2521 4.287326 CCTCACCCCCTAATTAGATCCTTC 59.713 50.000 14.28 0.00 0.00 3.46
2563 2592 4.699257 GTGCATTTCCTGTCTTCTTGATCT 59.301 41.667 0.00 0.00 0.00 2.75
2679 2715 8.399425 GCTAGCAGTAATATATACACTGTCGAT 58.601 37.037 20.40 11.71 41.39 3.59
2729 2770 6.017400 ACTGTTCCATTTCAAATACAGCAG 57.983 37.500 10.31 6.98 37.18 4.24
2770 2826 6.607004 ACTCCCTTCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
2774 3089 5.420409 CCTTCGTCCCATAATATAAGAGCC 58.580 45.833 0.00 0.00 0.00 4.70
2822 3137 8.870075 AAATGGAGGAAGTATATTTCATAGCC 57.130 34.615 9.86 2.68 0.00 3.93
2889 3204 2.802247 GCAACCCTTTTCTTGCATTGTC 59.198 45.455 0.00 0.00 42.05 3.18
2961 3276 4.547406 ACGTTTCACTCTTTTTAGTGCC 57.453 40.909 0.00 0.00 45.34 5.01
2974 3289 4.893424 TTTAGTGCCAGACAAGTTGTTC 57.107 40.909 10.45 3.80 0.00 3.18
3061 4585 4.882671 AAAGCGCCTTCTGTATGTATTG 57.117 40.909 2.29 0.00 0.00 1.90
3085 4610 2.582202 GATGACCACGCATTGCACGG 62.582 60.000 9.69 10.38 34.00 4.94
3090 4615 1.007964 CACGCATTGCACGGGAAAA 60.008 52.632 9.69 0.00 35.45 2.29
3098 4623 4.380444 GCATTGCACGGGAAAAGAAATCTA 60.380 41.667 3.15 0.00 0.00 1.98
3129 4654 7.384660 GCAATCTCCAATTTACATCACACAAAA 59.615 33.333 0.00 0.00 0.00 2.44
3211 4736 2.094338 GTGTACGGGGAAGTAGAAGGTG 60.094 54.545 0.00 0.00 0.00 4.00
3278 4803 8.502387 CAAATGTGTGTTTTCTTTCAAAAAGGA 58.498 29.630 0.00 0.00 0.00 3.36
3282 4807 7.759433 TGTGTGTTTTCTTTCAAAAAGGAGATC 59.241 33.333 0.00 0.00 0.00 2.75
3283 4808 7.759433 GTGTGTTTTCTTTCAAAAAGGAGATCA 59.241 33.333 0.00 0.00 0.00 2.92
3302 4827 2.159014 TCACACCGGCCACTACATTATC 60.159 50.000 0.00 0.00 0.00 1.75
3356 4881 7.602644 ACAAAGTATCAAGCATTCGAGAAAGTA 59.397 33.333 0.00 0.00 0.00 2.24
3361 4886 9.052080 GTATCAAGCATTCGAGAAAGTAAAAAC 57.948 33.333 0.00 0.00 0.00 2.43
3398 4923 7.149569 TCAAGACAACAATCAATCAATCCTC 57.850 36.000 0.00 0.00 0.00 3.71
3409 4934 3.023735 AATCCTCCTGCCCACCCC 61.024 66.667 0.00 0.00 0.00 4.95
3433 4958 4.478371 CCCGCTGCTGATGGCTCA 62.478 66.667 0.00 0.00 42.39 4.26
3434 4959 3.200593 CCGCTGCTGATGGCTCAC 61.201 66.667 0.00 0.00 42.39 3.51
3454 4980 4.719369 AACAGGAGCGCGGTCGAC 62.719 66.667 29.60 18.09 38.10 4.20
3481 5007 2.685380 CGTTCCTCCTCTGCCCCT 60.685 66.667 0.00 0.00 0.00 4.79
3502 5030 3.249961 CCCTATTCCCCTCCCGCC 61.250 72.222 0.00 0.00 0.00 6.13
3551 5079 1.542492 GCATGATGATGATCCCACCC 58.458 55.000 0.00 0.00 0.00 4.61
3552 5080 1.889699 GCATGATGATGATCCCACCCC 60.890 57.143 0.00 0.00 0.00 4.95
3573 5101 1.369091 GCGCCAATCACGACTTCCAT 61.369 55.000 0.00 0.00 0.00 3.41
3575 5103 0.734889 GCCAATCACGACTTCCATGG 59.265 55.000 4.97 4.97 0.00 3.66
3586 5114 2.687418 CTTCCATGGATCCCGCCAGG 62.687 65.000 17.06 4.03 42.15 4.45
3612 5140 2.494888 TTCTATCAGATCCCCAGCCA 57.505 50.000 0.00 0.00 0.00 4.75
3628 5156 4.767255 CAGAGCGCCCCACCAGAC 62.767 72.222 2.29 0.00 0.00 3.51
3663 5191 1.339610 CGGCTTGAGTGGATCCTCTAG 59.660 57.143 16.22 11.95 37.37 2.43
3665 5193 2.393646 GCTTGAGTGGATCCTCTAGGT 58.606 52.381 16.22 0.00 35.64 3.08
3667 5195 3.431486 GCTTGAGTGGATCCTCTAGGTTG 60.431 52.174 16.22 6.81 35.64 3.77
3670 5198 1.132500 GTGGATCCTCTAGGTTGGGG 58.868 60.000 14.23 0.00 36.34 4.96
3672 5200 1.082194 TGGATCCTCTAGGTTGGGGTT 59.918 52.381 14.23 0.00 36.34 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.997340 AGAGGGACCACTAGGGACTA 58.003 55.000 0.00 0.00 41.75 2.59
1 2 1.094269 AAGAGGGACCACTAGGGACT 58.906 55.000 0.00 0.00 46.37 3.85
2 3 1.196012 CAAGAGGGACCACTAGGGAC 58.804 60.000 0.00 0.00 41.15 4.46
3 4 0.790993 ACAAGAGGGACCACTAGGGA 59.209 55.000 0.00 0.00 41.15 4.20
4 5 0.905357 CACAAGAGGGACCACTAGGG 59.095 60.000 0.00 0.00 44.81 3.53
5 6 1.276421 CACACAAGAGGGACCACTAGG 59.724 57.143 0.00 0.00 42.21 3.02
6 7 1.276421 CCACACAAGAGGGACCACTAG 59.724 57.143 0.00 0.00 0.00 2.57
7 8 1.348064 CCACACAAGAGGGACCACTA 58.652 55.000 0.00 0.00 0.00 2.74
8 9 0.694444 ACCACACAAGAGGGACCACT 60.694 55.000 0.00 0.00 0.00 4.00
9 10 0.182775 AACCACACAAGAGGGACCAC 59.817 55.000 0.00 0.00 0.00 4.16
10 11 1.809133 TAACCACACAAGAGGGACCA 58.191 50.000 0.00 0.00 0.00 4.02
11 12 2.943036 TTAACCACACAAGAGGGACC 57.057 50.000 0.00 0.00 0.00 4.46
12 13 4.643334 ACTTTTTAACCACACAAGAGGGAC 59.357 41.667 0.00 0.00 0.00 4.46
13 14 4.862371 ACTTTTTAACCACACAAGAGGGA 58.138 39.130 0.00 0.00 0.00 4.20
14 15 4.887655 AGACTTTTTAACCACACAAGAGGG 59.112 41.667 0.00 0.00 0.00 4.30
15 16 5.823045 AGAGACTTTTTAACCACACAAGAGG 59.177 40.000 0.00 0.00 0.00 3.69
16 17 6.927294 AGAGACTTTTTAACCACACAAGAG 57.073 37.500 0.00 0.00 0.00 2.85
17 18 8.262227 TCTTAGAGACTTTTTAACCACACAAGA 58.738 33.333 0.00 0.00 0.00 3.02
18 19 8.433421 TCTTAGAGACTTTTTAACCACACAAG 57.567 34.615 0.00 0.00 0.00 3.16
19 20 7.497909 CCTCTTAGAGACTTTTTAACCACACAA 59.502 37.037 11.32 0.00 0.00 3.33
20 21 6.990349 CCTCTTAGAGACTTTTTAACCACACA 59.010 38.462 11.32 0.00 0.00 3.72
21 22 6.427242 CCCTCTTAGAGACTTTTTAACCACAC 59.573 42.308 11.32 0.00 0.00 3.82
22 23 6.328148 TCCCTCTTAGAGACTTTTTAACCACA 59.672 38.462 11.32 0.00 0.00 4.17
23 24 6.766429 TCCCTCTTAGAGACTTTTTAACCAC 58.234 40.000 11.32 0.00 0.00 4.16
24 25 7.569599 ATCCCTCTTAGAGACTTTTTAACCA 57.430 36.000 11.32 0.00 0.00 3.67
25 26 8.865420 AAATCCCTCTTAGAGACTTTTTAACC 57.135 34.615 11.32 0.00 0.00 2.85
49 50 7.283807 GGACTTTTTGGTGTAGGACTAGAAAAA 59.716 37.037 0.00 0.00 0.00 1.94
50 51 6.769341 GGACTTTTTGGTGTAGGACTAGAAAA 59.231 38.462 0.00 0.00 0.00 2.29
51 52 6.293698 GGACTTTTTGGTGTAGGACTAGAAA 58.706 40.000 0.00 0.00 0.00 2.52
52 53 5.221783 GGGACTTTTTGGTGTAGGACTAGAA 60.222 44.000 0.00 0.00 0.00 2.10
53 54 4.285260 GGGACTTTTTGGTGTAGGACTAGA 59.715 45.833 0.00 0.00 0.00 2.43
54 55 4.286291 AGGGACTTTTTGGTGTAGGACTAG 59.714 45.833 0.00 0.00 27.25 2.57
55 56 4.041198 CAGGGACTTTTTGGTGTAGGACTA 59.959 45.833 0.00 0.00 34.60 2.59
56 57 3.053826 AGGGACTTTTTGGTGTAGGACT 58.946 45.455 0.00 0.00 27.25 3.85
57 58 3.146847 CAGGGACTTTTTGGTGTAGGAC 58.853 50.000 0.00 0.00 34.60 3.85
58 59 3.050089 TCAGGGACTTTTTGGTGTAGGA 58.950 45.455 0.00 0.00 34.60 2.94
59 60 3.502123 TCAGGGACTTTTTGGTGTAGG 57.498 47.619 0.00 0.00 34.60 3.18
60 61 5.126384 TGTTTTCAGGGACTTTTTGGTGTAG 59.874 40.000 0.00 0.00 34.60 2.74
61 62 5.017490 TGTTTTCAGGGACTTTTTGGTGTA 58.983 37.500 0.00 0.00 34.60 2.90
62 63 3.835395 TGTTTTCAGGGACTTTTTGGTGT 59.165 39.130 0.00 0.00 34.60 4.16
63 64 4.464069 TGTTTTCAGGGACTTTTTGGTG 57.536 40.909 0.00 0.00 34.60 4.17
64 65 5.221742 TGTTTGTTTTCAGGGACTTTTTGGT 60.222 36.000 0.00 0.00 34.60 3.67
65 66 5.241662 TGTTTGTTTTCAGGGACTTTTTGG 58.758 37.500 0.00 0.00 34.60 3.28
66 67 6.037062 GGATGTTTGTTTTCAGGGACTTTTTG 59.963 38.462 0.00 0.00 34.60 2.44
67 68 6.112734 GGATGTTTGTTTTCAGGGACTTTTT 58.887 36.000 0.00 0.00 34.60 1.94
68 69 5.396324 GGGATGTTTGTTTTCAGGGACTTTT 60.396 40.000 0.00 0.00 34.60 2.27
69 70 4.100963 GGGATGTTTGTTTTCAGGGACTTT 59.899 41.667 0.00 0.00 34.60 2.66
70 71 3.641436 GGGATGTTTGTTTTCAGGGACTT 59.359 43.478 0.00 0.00 34.60 3.01
71 72 3.230976 GGGATGTTTGTTTTCAGGGACT 58.769 45.455 0.00 0.00 43.88 3.85
72 73 2.299013 GGGGATGTTTGTTTTCAGGGAC 59.701 50.000 0.00 0.00 0.00 4.46
73 74 2.178984 AGGGGATGTTTGTTTTCAGGGA 59.821 45.455 0.00 0.00 0.00 4.20
74 75 2.562738 GAGGGGATGTTTGTTTTCAGGG 59.437 50.000 0.00 0.00 0.00 4.45
75 76 3.230134 TGAGGGGATGTTTGTTTTCAGG 58.770 45.455 0.00 0.00 0.00 3.86
76 77 4.144297 TCTGAGGGGATGTTTGTTTTCAG 58.856 43.478 0.00 0.00 33.81 3.02
77 78 4.177537 TCTGAGGGGATGTTTGTTTTCA 57.822 40.909 0.00 0.00 0.00 2.69
78 79 4.584743 AGTTCTGAGGGGATGTTTGTTTTC 59.415 41.667 0.00 0.00 0.00 2.29
79 80 4.546674 AGTTCTGAGGGGATGTTTGTTTT 58.453 39.130 0.00 0.00 0.00 2.43
80 81 4.184649 AGTTCTGAGGGGATGTTTGTTT 57.815 40.909 0.00 0.00 0.00 2.83
81 82 3.884037 AGTTCTGAGGGGATGTTTGTT 57.116 42.857 0.00 0.00 0.00 2.83
82 83 3.884037 AAGTTCTGAGGGGATGTTTGT 57.116 42.857 0.00 0.00 0.00 2.83
83 84 3.507622 GGAAAGTTCTGAGGGGATGTTTG 59.492 47.826 0.00 0.00 0.00 2.93
84 85 3.399305 AGGAAAGTTCTGAGGGGATGTTT 59.601 43.478 0.00 0.00 0.00 2.83
85 86 2.989571 AGGAAAGTTCTGAGGGGATGTT 59.010 45.455 0.00 0.00 0.00 2.71
86 87 2.637165 AGGAAAGTTCTGAGGGGATGT 58.363 47.619 0.00 0.00 0.00 3.06
87 88 5.379706 AATAGGAAAGTTCTGAGGGGATG 57.620 43.478 0.00 0.00 0.00 3.51
88 89 6.327887 GTCTAATAGGAAAGTTCTGAGGGGAT 59.672 42.308 0.00 0.00 0.00 3.85
89 90 5.661759 GTCTAATAGGAAAGTTCTGAGGGGA 59.338 44.000 0.00 0.00 0.00 4.81
90 91 5.425539 TGTCTAATAGGAAAGTTCTGAGGGG 59.574 44.000 0.00 0.00 0.00 4.79
91 92 6.546428 TGTCTAATAGGAAAGTTCTGAGGG 57.454 41.667 0.00 0.00 0.00 4.30
92 93 8.848474 TTTTGTCTAATAGGAAAGTTCTGAGG 57.152 34.615 0.00 0.00 0.00 3.86
93 94 9.495572 ACTTTTGTCTAATAGGAAAGTTCTGAG 57.504 33.333 9.72 0.00 37.27 3.35
143 144 6.068010 ACCCATCAGTTTTCTCAAATGTGTA 58.932 36.000 0.00 0.00 0.00 2.90
147 148 6.824305 ACTACCCATCAGTTTTCTCAAATG 57.176 37.500 0.00 0.00 0.00 2.32
148 149 7.942341 TGTTACTACCCATCAGTTTTCTCAAAT 59.058 33.333 0.00 0.00 0.00 2.32
151 152 6.042781 ACTGTTACTACCCATCAGTTTTCTCA 59.957 38.462 0.00 0.00 36.17 3.27
156 157 9.662947 GTTAATACTGTTACTACCCATCAGTTT 57.337 33.333 0.00 0.00 39.54 2.66
167 168 7.716998 CGGAGGGAGTAGTTAATACTGTTACTA 59.283 40.741 0.00 0.00 45.06 1.82
183 184 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
185 186 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
186 187 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
187 188 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
215 216 9.376075 CATATGTAGTCACTTGTTGAAATCTCT 57.624 33.333 0.00 0.00 35.39 3.10
216 217 9.371136 TCATATGTAGTCACTTGTTGAAATCTC 57.629 33.333 1.90 0.00 35.39 2.75
217 218 9.725019 TTCATATGTAGTCACTTGTTGAAATCT 57.275 29.630 1.90 0.00 35.39 2.40
218 219 9.979270 CTTCATATGTAGTCACTTGTTGAAATC 57.021 33.333 1.90 0.00 35.39 2.17
219 220 8.454106 GCTTCATATGTAGTCACTTGTTGAAAT 58.546 33.333 10.61 0.00 35.39 2.17
220 221 7.443879 TGCTTCATATGTAGTCACTTGTTGAAA 59.556 33.333 10.61 0.00 35.39 2.69
222 223 6.463360 TGCTTCATATGTAGTCACTTGTTGA 58.537 36.000 10.61 0.00 0.00 3.18
223 224 6.726258 TGCTTCATATGTAGTCACTTGTTG 57.274 37.500 10.61 0.00 0.00 3.33
224 225 7.744087 TTTGCTTCATATGTAGTCACTTGTT 57.256 32.000 10.61 0.00 0.00 2.83
226 227 8.453320 TCATTTTGCTTCATATGTAGTCACTTG 58.547 33.333 10.61 4.90 0.00 3.16
227 228 8.565896 TCATTTTGCTTCATATGTAGTCACTT 57.434 30.769 10.61 0.00 0.00 3.16
229 230 7.907045 CACTCATTTTGCTTCATATGTAGTCAC 59.093 37.037 10.61 0.00 0.00 3.67
230 231 7.823799 TCACTCATTTTGCTTCATATGTAGTCA 59.176 33.333 10.61 6.75 0.00 3.41
231 232 8.201554 TCACTCATTTTGCTTCATATGTAGTC 57.798 34.615 10.61 4.54 0.00 2.59
232 233 8.565896 TTCACTCATTTTGCTTCATATGTAGT 57.434 30.769 10.61 0.00 0.00 2.73
233 234 9.661187 GATTCACTCATTTTGCTTCATATGTAG 57.339 33.333 5.04 5.04 0.00 2.74
234 235 9.399797 AGATTCACTCATTTTGCTTCATATGTA 57.600 29.630 1.90 0.00 0.00 2.29
235 236 8.289939 AGATTCACTCATTTTGCTTCATATGT 57.710 30.769 1.90 0.00 0.00 2.29
236 237 9.661187 GTAGATTCACTCATTTTGCTTCATATG 57.339 33.333 0.00 0.00 0.00 1.78
237 238 9.399797 TGTAGATTCACTCATTTTGCTTCATAT 57.600 29.630 0.00 0.00 0.00 1.78
238 239 8.668353 GTGTAGATTCACTCATTTTGCTTCATA 58.332 33.333 0.00 0.00 35.68 2.15
239 240 7.392673 AGTGTAGATTCACTCATTTTGCTTCAT 59.607 33.333 0.00 0.00 44.07 2.57
240 241 6.712095 AGTGTAGATTCACTCATTTTGCTTCA 59.288 34.615 0.00 0.00 44.07 3.02
241 242 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
291 292 8.745590 TGTTTTAGAGATTTTAAATGGCCTACC 58.254 33.333 3.32 0.00 0.00 3.18
292 293 9.569167 GTGTTTTAGAGATTTTAAATGGCCTAC 57.431 33.333 3.32 0.00 0.00 3.18
293 294 9.303116 TGTGTTTTAGAGATTTTAAATGGCCTA 57.697 29.630 3.32 0.00 0.00 3.93
294 295 8.189119 TGTGTTTTAGAGATTTTAAATGGCCT 57.811 30.769 3.32 0.00 0.00 5.19
295 296 8.825667 TTGTGTTTTAGAGATTTTAAATGGCC 57.174 30.769 0.00 0.00 0.00 5.36
303 304 9.981114 CCCAAGTATTTGTGTTTTAGAGATTTT 57.019 29.630 0.00 0.00 32.21 1.82
304 305 9.362151 TCCCAAGTATTTGTGTTTTAGAGATTT 57.638 29.630 0.00 0.00 32.21 2.17
305 306 8.934023 TCCCAAGTATTTGTGTTTTAGAGATT 57.066 30.769 0.00 0.00 32.21 2.40
306 307 8.793592 GTTCCCAAGTATTTGTGTTTTAGAGAT 58.206 33.333 0.00 0.00 32.21 2.75
307 308 7.041644 CGTTCCCAAGTATTTGTGTTTTAGAGA 60.042 37.037 0.00 0.00 32.21 3.10
308 309 7.075741 CGTTCCCAAGTATTTGTGTTTTAGAG 58.924 38.462 0.00 0.00 32.21 2.43
309 310 6.016943 CCGTTCCCAAGTATTTGTGTTTTAGA 60.017 38.462 0.00 0.00 32.21 2.10
310 311 6.016943 TCCGTTCCCAAGTATTTGTGTTTTAG 60.017 38.462 0.00 0.00 32.21 1.85
311 312 5.826737 TCCGTTCCCAAGTATTTGTGTTTTA 59.173 36.000 0.00 0.00 32.21 1.52
312 313 4.645588 TCCGTTCCCAAGTATTTGTGTTTT 59.354 37.500 0.00 0.00 32.21 2.43
313 314 4.208746 TCCGTTCCCAAGTATTTGTGTTT 58.791 39.130 0.00 0.00 32.21 2.83
314 315 3.818773 CTCCGTTCCCAAGTATTTGTGTT 59.181 43.478 0.00 0.00 32.21 3.32
315 316 3.408634 CTCCGTTCCCAAGTATTTGTGT 58.591 45.455 0.00 0.00 32.21 3.72
316 317 2.747446 CCTCCGTTCCCAAGTATTTGTG 59.253 50.000 0.00 0.00 32.21 3.33
317 318 2.640826 TCCTCCGTTCCCAAGTATTTGT 59.359 45.455 0.00 0.00 32.21 2.83
318 319 3.343941 TCCTCCGTTCCCAAGTATTTG 57.656 47.619 0.00 0.00 0.00 2.32
319 320 3.329814 ACTTCCTCCGTTCCCAAGTATTT 59.670 43.478 0.00 0.00 0.00 1.40
320 321 2.910977 ACTTCCTCCGTTCCCAAGTATT 59.089 45.455 0.00 0.00 0.00 1.89
321 322 2.547990 ACTTCCTCCGTTCCCAAGTAT 58.452 47.619 0.00 0.00 0.00 2.12
322 323 2.019807 ACTTCCTCCGTTCCCAAGTA 57.980 50.000 0.00 0.00 0.00 2.24
323 324 2.019807 TACTTCCTCCGTTCCCAAGT 57.980 50.000 0.00 0.00 0.00 3.16
324 325 2.038033 TGTTACTTCCTCCGTTCCCAAG 59.962 50.000 0.00 0.00 0.00 3.61
325 326 2.048601 TGTTACTTCCTCCGTTCCCAA 58.951 47.619 0.00 0.00 0.00 4.12
326 327 1.345415 GTGTTACTTCCTCCGTTCCCA 59.655 52.381 0.00 0.00 0.00 4.37
327 328 1.345415 TGTGTTACTTCCTCCGTTCCC 59.655 52.381 0.00 0.00 0.00 3.97
328 329 2.825861 TGTGTTACTTCCTCCGTTCC 57.174 50.000 0.00 0.00 0.00 3.62
329 330 7.208080 ACATATATGTGTTACTTCCTCCGTTC 58.792 38.462 17.60 0.00 40.03 3.95
330 331 7.120923 ACATATATGTGTTACTTCCTCCGTT 57.879 36.000 17.60 0.00 40.03 4.44
331 332 6.726490 ACATATATGTGTTACTTCCTCCGT 57.274 37.500 17.60 0.00 40.03 4.69
351 352 9.734984 AGCCGGCTATTTAAAACTATAATACAT 57.265 29.630 31.86 0.00 0.00 2.29
356 357 9.374838 GCTATAGCCGGCTATTTAAAACTATAA 57.625 33.333 44.65 25.48 39.65 0.98
357 358 8.755977 AGCTATAGCCGGCTATTTAAAACTATA 58.244 33.333 44.65 25.94 43.38 1.31
358 359 7.621796 AGCTATAGCCGGCTATTTAAAACTAT 58.378 34.615 44.65 26.21 43.38 2.12
359 360 7.001099 AGCTATAGCCGGCTATTTAAAACTA 57.999 36.000 44.65 27.23 43.38 2.24
360 361 5.866207 AGCTATAGCCGGCTATTTAAAACT 58.134 37.500 44.65 29.88 43.38 2.66
361 362 5.932883 AGAGCTATAGCCGGCTATTTAAAAC 59.067 40.000 44.65 30.36 43.38 2.43
362 363 5.932303 CAGAGCTATAGCCGGCTATTTAAAA 59.068 40.000 44.65 29.19 43.38 1.52
363 364 5.479306 CAGAGCTATAGCCGGCTATTTAAA 58.521 41.667 44.65 29.52 43.38 1.52
364 365 4.620803 GCAGAGCTATAGCCGGCTATTTAA 60.621 45.833 44.65 29.85 43.38 1.52
365 366 3.119101 GCAGAGCTATAGCCGGCTATTTA 60.119 47.826 44.65 30.51 43.38 1.40
366 367 2.354203 GCAGAGCTATAGCCGGCTATTT 60.354 50.000 44.65 31.93 43.38 1.40
367 368 1.205893 GCAGAGCTATAGCCGGCTATT 59.794 52.381 44.65 31.45 43.38 1.73
368 369 0.820871 GCAGAGCTATAGCCGGCTAT 59.179 55.000 42.09 42.09 43.38 2.97
369 370 0.251386 AGCAGAGCTATAGCCGGCTA 60.251 55.000 36.88 36.88 43.38 3.93
370 371 0.251386 TAGCAGAGCTATAGCCGGCT 60.251 55.000 34.85 34.85 41.92 5.52
371 372 2.268022 TAGCAGAGCTATAGCCGGC 58.732 57.895 21.89 21.89 43.38 6.13
379 380 1.251527 GGCGGCCTATAGCAGAGCTA 61.252 60.000 12.87 0.71 45.55 3.32
380 381 2.578714 GGCGGCCTATAGCAGAGCT 61.579 63.158 12.87 0.00 46.50 4.09
381 382 2.047750 GGCGGCCTATAGCAGAGC 60.048 66.667 12.87 0.00 46.50 4.09
382 383 1.135915 CTATGGCGGCCTATAGCAGAG 59.864 57.143 21.46 0.97 46.50 3.35
383 384 1.186200 CTATGGCGGCCTATAGCAGA 58.814 55.000 21.46 0.00 46.50 4.26
384 385 0.460987 GCTATGGCGGCCTATAGCAG 60.461 60.000 33.91 19.81 46.86 4.24
385 386 1.596934 GCTATGGCGGCCTATAGCA 59.403 57.895 33.91 15.03 46.86 3.49
386 387 1.153349 GGCTATGGCGGCCTATAGC 60.153 63.158 32.63 32.63 46.90 2.97
393 394 1.729881 CTGAAAAGGCTATGGCGGC 59.270 57.895 0.00 0.00 39.81 6.53
394 395 1.031571 TGCTGAAAAGGCTATGGCGG 61.032 55.000 0.00 0.00 39.81 6.13
395 396 0.379669 CTGCTGAAAAGGCTATGGCG 59.620 55.000 0.00 0.00 39.81 5.69
396 397 0.743097 CCTGCTGAAAAGGCTATGGC 59.257 55.000 0.00 0.00 37.82 4.40
403 404 2.968206 GGCAGCCTGCTGAAAAGG 59.032 61.111 22.64 0.00 46.30 3.11
410 411 2.117156 CATTTAGCGGCAGCCTGCT 61.117 57.895 26.82 26.82 46.67 4.24
411 412 2.410469 CATTTAGCGGCAGCCTGC 59.590 61.111 8.55 8.55 46.67 4.85
412 413 1.718757 GACCATTTAGCGGCAGCCTG 61.719 60.000 10.54 4.27 46.67 4.85
413 414 1.452108 GACCATTTAGCGGCAGCCT 60.452 57.895 10.54 0.00 46.67 4.58
414 415 2.823829 CGACCATTTAGCGGCAGCC 61.824 63.158 4.82 0.00 46.67 4.85
415 416 2.709475 CGACCATTTAGCGGCAGC 59.291 61.111 0.00 0.00 45.58 5.25
416 417 2.709475 GCGACCATTTAGCGGCAG 59.291 61.111 1.45 0.00 0.00 4.85
419 420 0.742990 TGAAGGCGACCATTTAGCGG 60.743 55.000 0.00 0.00 0.00 5.52
420 421 0.373716 GTGAAGGCGACCATTTAGCG 59.626 55.000 0.00 0.00 0.00 4.26
421 422 1.448985 TGTGAAGGCGACCATTTAGC 58.551 50.000 0.00 0.00 0.00 3.09
422 423 4.701956 ATTTGTGAAGGCGACCATTTAG 57.298 40.909 0.00 0.00 0.00 1.85
423 424 4.095782 GCTATTTGTGAAGGCGACCATTTA 59.904 41.667 0.00 0.00 0.00 1.40
424 425 3.119495 GCTATTTGTGAAGGCGACCATTT 60.119 43.478 0.00 0.00 0.00 2.32
425 426 2.423538 GCTATTTGTGAAGGCGACCATT 59.576 45.455 0.00 0.00 0.00 3.16
426 427 2.017049 GCTATTTGTGAAGGCGACCAT 58.983 47.619 0.00 0.00 0.00 3.55
427 428 1.448985 GCTATTTGTGAAGGCGACCA 58.551 50.000 0.00 0.00 0.00 4.02
428 429 0.733150 GGCTATTTGTGAAGGCGACC 59.267 55.000 0.00 0.00 0.00 4.79
429 430 1.739067 AGGCTATTTGTGAAGGCGAC 58.261 50.000 0.00 0.00 42.73 5.19
430 431 3.620427 TTAGGCTATTTGTGAAGGCGA 57.380 42.857 0.00 0.00 42.73 5.54
431 432 6.183360 GCTATATTAGGCTATTTGTGAAGGCG 60.183 42.308 0.00 0.00 42.73 5.52
432 433 6.881602 AGCTATATTAGGCTATTTGTGAAGGC 59.118 38.462 0.00 0.00 37.00 4.35
433 434 8.097038 TCAGCTATATTAGGCTATTTGTGAAGG 58.903 37.037 0.00 0.00 37.00 3.46
434 435 9.664332 ATCAGCTATATTAGGCTATTTGTGAAG 57.336 33.333 0.00 0.00 37.00 3.02
438 439 9.236006 CCAAATCAGCTATATTAGGCTATTTGT 57.764 33.333 19.77 0.00 37.54 2.83
439 440 9.453572 TCCAAATCAGCTATATTAGGCTATTTG 57.546 33.333 0.00 17.75 38.07 2.32
440 441 9.678260 CTCCAAATCAGCTATATTAGGCTATTT 57.322 33.333 0.00 0.00 37.00 1.40
441 442 8.270744 CCTCCAAATCAGCTATATTAGGCTATT 58.729 37.037 0.00 0.00 37.00 1.73
442 443 7.636856 GCCTCCAAATCAGCTATATTAGGCTAT 60.637 40.741 17.92 0.00 41.96 2.97
443 444 6.352222 GCCTCCAAATCAGCTATATTAGGCTA 60.352 42.308 17.92 0.00 41.96 3.93
444 445 5.572475 GCCTCCAAATCAGCTATATTAGGCT 60.572 44.000 17.92 0.00 41.96 4.58
445 446 4.637977 GCCTCCAAATCAGCTATATTAGGC 59.362 45.833 13.47 13.47 39.03 3.93
446 447 5.189180 GGCCTCCAAATCAGCTATATTAGG 58.811 45.833 0.00 0.00 0.00 2.69
447 448 5.189180 GGGCCTCCAAATCAGCTATATTAG 58.811 45.833 0.84 0.00 0.00 1.73
448 449 4.323485 CGGGCCTCCAAATCAGCTATATTA 60.323 45.833 0.84 0.00 0.00 0.98
449 450 3.560025 CGGGCCTCCAAATCAGCTATATT 60.560 47.826 0.84 0.00 0.00 1.28
450 451 2.026822 CGGGCCTCCAAATCAGCTATAT 60.027 50.000 0.84 0.00 0.00 0.86
451 452 1.347707 CGGGCCTCCAAATCAGCTATA 59.652 52.381 0.84 0.00 0.00 1.31
452 453 0.109342 CGGGCCTCCAAATCAGCTAT 59.891 55.000 0.84 0.00 0.00 2.97
453 454 1.526887 CGGGCCTCCAAATCAGCTA 59.473 57.895 0.84 0.00 0.00 3.32
454 455 2.273449 CGGGCCTCCAAATCAGCT 59.727 61.111 0.84 0.00 0.00 4.24
455 456 3.521796 GCGGGCCTCCAAATCAGC 61.522 66.667 0.84 0.00 0.00 4.26
456 457 2.830370 GGCGGGCCTCCAAATCAG 60.830 66.667 7.92 0.00 0.00 2.90
457 458 4.794648 CGGCGGGCCTCCAAATCA 62.795 66.667 13.99 0.00 0.00 2.57
464 465 4.547367 ACAATAGCGGCGGGCCTC 62.547 66.667 9.78 0.00 45.17 4.70
465 466 4.547367 GACAATAGCGGCGGGCCT 62.547 66.667 9.78 0.00 45.17 5.19
467 468 2.725203 TATGGACAATAGCGGCGGGC 62.725 60.000 9.78 0.00 44.05 6.13
468 469 0.670546 CTATGGACAATAGCGGCGGG 60.671 60.000 9.78 0.00 32.13 6.13
469 470 2.827604 CTATGGACAATAGCGGCGG 58.172 57.895 9.78 0.00 32.13 6.13
475 476 3.895232 ATAGCGGGCTATGGACAATAG 57.105 47.619 12.15 0.00 41.23 1.73
476 477 4.634012 AAATAGCGGGCTATGGACAATA 57.366 40.909 13.53 0.00 39.03 1.90
477 478 3.508845 AAATAGCGGGCTATGGACAAT 57.491 42.857 13.53 0.00 39.03 2.71
478 479 4.425180 TTAAATAGCGGGCTATGGACAA 57.575 40.909 13.53 3.88 39.03 3.18
479 480 4.425180 TTTAAATAGCGGGCTATGGACA 57.575 40.909 13.53 0.00 39.03 4.02
480 481 4.577283 TGTTTTAAATAGCGGGCTATGGAC 59.423 41.667 13.53 8.78 39.03 4.02
481 482 4.783055 TGTTTTAAATAGCGGGCTATGGA 58.217 39.130 13.53 2.82 39.03 3.41
482 483 5.705609 ATGTTTTAAATAGCGGGCTATGG 57.294 39.130 13.53 0.00 39.03 2.74
483 484 6.734137 TCAATGTTTTAAATAGCGGGCTATG 58.266 36.000 13.53 0.00 39.03 2.23
484 485 6.952773 TCAATGTTTTAAATAGCGGGCTAT 57.047 33.333 7.36 7.36 40.63 2.97
485 486 6.952773 ATCAATGTTTTAAATAGCGGGCTA 57.047 33.333 2.42 2.42 0.00 3.93
486 487 5.852282 ATCAATGTTTTAAATAGCGGGCT 57.148 34.783 0.00 0.00 0.00 5.19
487 488 7.145323 ACATATCAATGTTTTAAATAGCGGGC 58.855 34.615 0.00 0.00 44.07 6.13
502 503 9.149225 GGCTCACTCTTTCTATACATATCAATG 57.851 37.037 0.00 0.00 39.17 2.82
503 504 8.031864 CGGCTCACTCTTTCTATACATATCAAT 58.968 37.037 0.00 0.00 0.00 2.57
504 505 7.230712 TCGGCTCACTCTTTCTATACATATCAA 59.769 37.037 0.00 0.00 0.00 2.57
505 506 6.715264 TCGGCTCACTCTTTCTATACATATCA 59.285 38.462 0.00 0.00 0.00 2.15
506 507 7.147143 TCGGCTCACTCTTTCTATACATATC 57.853 40.000 0.00 0.00 0.00 1.63
516 517 1.014564 CGGGTTCGGCTCACTCTTTC 61.015 60.000 0.00 0.00 0.00 2.62
524 525 2.544267 CTGAATTTATCGGGTTCGGCTC 59.456 50.000 0.00 0.00 36.95 4.70
526 527 2.285977 ACTGAATTTATCGGGTTCGGC 58.714 47.619 0.00 0.00 38.87 5.54
578 585 2.447443 ACAGCGATACTCTCTGTCCAA 58.553 47.619 0.00 0.00 37.90 3.53
703 712 1.681793 GACGCTAGGCTACATGGAAGA 59.318 52.381 0.00 0.00 0.00 2.87
760 769 6.778821 TCTCTTTCTCTCTCTCTTTCTCAGA 58.221 40.000 0.00 0.00 0.00 3.27
762 773 7.723616 TCTTTCTCTTTCTCTCTCTCTTTCTCA 59.276 37.037 0.00 0.00 0.00 3.27
767 778 8.477419 TTTCTCTTTCTCTTTCTCTCTCTCTT 57.523 34.615 0.00 0.00 0.00 2.85
774 785 6.267471 TGCTCTCTTTCTCTTTCTCTTTCTCT 59.733 38.462 0.00 0.00 0.00 3.10
775 786 6.454795 TGCTCTCTTTCTCTTTCTCTTTCTC 58.545 40.000 0.00 0.00 0.00 2.87
776 787 6.418057 TGCTCTCTTTCTCTTTCTCTTTCT 57.582 37.500 0.00 0.00 0.00 2.52
777 788 7.489574 TTTGCTCTCTTTCTCTTTCTCTTTC 57.510 36.000 0.00 0.00 0.00 2.62
778 789 7.466590 CGTTTTGCTCTCTTTCTCTTTCTCTTT 60.467 37.037 0.00 0.00 0.00 2.52
779 790 6.018343 CGTTTTGCTCTCTTTCTCTTTCTCTT 60.018 38.462 0.00 0.00 0.00 2.85
780 791 5.465056 CGTTTTGCTCTCTTTCTCTTTCTCT 59.535 40.000 0.00 0.00 0.00 3.10
781 792 5.333721 CCGTTTTGCTCTCTTTCTCTTTCTC 60.334 44.000 0.00 0.00 0.00 2.87
782 793 4.513318 CCGTTTTGCTCTCTTTCTCTTTCT 59.487 41.667 0.00 0.00 0.00 2.52
783 794 4.273724 ACCGTTTTGCTCTCTTTCTCTTTC 59.726 41.667 0.00 0.00 0.00 2.62
784 795 4.035675 CACCGTTTTGCTCTCTTTCTCTTT 59.964 41.667 0.00 0.00 0.00 2.52
785 796 3.561725 CACCGTTTTGCTCTCTTTCTCTT 59.438 43.478 0.00 0.00 0.00 2.85
786 797 3.134458 CACCGTTTTGCTCTCTTTCTCT 58.866 45.455 0.00 0.00 0.00 3.10
787 798 2.872858 ACACCGTTTTGCTCTCTTTCTC 59.127 45.455 0.00 0.00 0.00 2.87
788 799 2.872858 GACACCGTTTTGCTCTCTTTCT 59.127 45.455 0.00 0.00 0.00 2.52
789 800 2.872858 AGACACCGTTTTGCTCTCTTTC 59.127 45.455 0.00 0.00 0.00 2.62
790 801 2.919228 AGACACCGTTTTGCTCTCTTT 58.081 42.857 0.00 0.00 0.00 2.52
791 802 2.614057 CAAGACACCGTTTTGCTCTCTT 59.386 45.455 0.00 0.00 0.00 2.85
792 803 2.158957 TCAAGACACCGTTTTGCTCTCT 60.159 45.455 0.00 0.00 29.44 3.10
793 804 2.032808 GTCAAGACACCGTTTTGCTCTC 60.033 50.000 0.00 0.00 29.44 3.20
794 805 1.940613 GTCAAGACACCGTTTTGCTCT 59.059 47.619 0.00 0.00 29.44 4.09
795 806 1.940613 AGTCAAGACACCGTTTTGCTC 59.059 47.619 2.72 0.00 29.44 4.26
796 807 1.940613 GAGTCAAGACACCGTTTTGCT 59.059 47.619 2.72 0.00 29.44 3.91
797 808 1.940613 AGAGTCAAGACACCGTTTTGC 59.059 47.619 2.72 0.00 29.44 3.68
798 809 3.194861 TGAGAGTCAAGACACCGTTTTG 58.805 45.455 2.72 0.00 0.00 2.44
799 810 3.536956 TGAGAGTCAAGACACCGTTTT 57.463 42.857 2.72 0.00 0.00 2.43
800 811 3.536956 TTGAGAGTCAAGACACCGTTT 57.463 42.857 2.72 0.00 31.83 3.60
810 821 4.237724 CACGCACTATTCTTGAGAGTCAA 58.762 43.478 0.00 0.00 34.79 3.18
811 822 3.255888 ACACGCACTATTCTTGAGAGTCA 59.744 43.478 0.00 0.00 0.00 3.41
812 823 3.839293 ACACGCACTATTCTTGAGAGTC 58.161 45.455 0.00 0.00 0.00 3.36
813 824 3.944055 ACACGCACTATTCTTGAGAGT 57.056 42.857 0.00 0.00 0.00 3.24
814 825 6.893958 ATTAACACGCACTATTCTTGAGAG 57.106 37.500 0.00 0.00 0.00 3.20
815 826 7.652105 GGATATTAACACGCACTATTCTTGAGA 59.348 37.037 0.00 0.00 0.00 3.27
816 827 7.438160 TGGATATTAACACGCACTATTCTTGAG 59.562 37.037 0.00 0.00 0.00 3.02
817 828 7.269316 TGGATATTAACACGCACTATTCTTGA 58.731 34.615 0.00 0.00 0.00 3.02
818 829 7.438160 TCTGGATATTAACACGCACTATTCTTG 59.562 37.037 0.00 0.00 0.00 3.02
819 830 7.497595 TCTGGATATTAACACGCACTATTCTT 58.502 34.615 0.00 0.00 0.00 2.52
820 831 7.014326 TCTCTGGATATTAACACGCACTATTCT 59.986 37.037 0.00 0.00 0.00 2.40
821 832 7.145985 TCTCTGGATATTAACACGCACTATTC 58.854 38.462 0.00 0.00 0.00 1.75
822 833 7.050970 TCTCTGGATATTAACACGCACTATT 57.949 36.000 0.00 0.00 0.00 1.73
823 834 6.265649 ACTCTCTGGATATTAACACGCACTAT 59.734 38.462 0.00 0.00 0.00 2.12
824 835 5.593095 ACTCTCTGGATATTAACACGCACTA 59.407 40.000 0.00 0.00 0.00 2.74
825 836 4.402793 ACTCTCTGGATATTAACACGCACT 59.597 41.667 0.00 0.00 0.00 4.40
826 837 4.683832 ACTCTCTGGATATTAACACGCAC 58.316 43.478 0.00 0.00 0.00 5.34
827 838 5.109210 CAACTCTCTGGATATTAACACGCA 58.891 41.667 0.00 0.00 0.00 5.24
828 839 4.508124 CCAACTCTCTGGATATTAACACGC 59.492 45.833 0.00 0.00 38.96 5.34
829 840 5.661458 ACCAACTCTCTGGATATTAACACG 58.339 41.667 0.00 0.00 38.96 4.49
830 841 6.183360 GCAACCAACTCTCTGGATATTAACAC 60.183 42.308 0.00 0.00 38.96 3.32
831 842 5.880332 GCAACCAACTCTCTGGATATTAACA 59.120 40.000 0.00 0.00 38.96 2.41
832 843 6.037610 CAGCAACCAACTCTCTGGATATTAAC 59.962 42.308 0.00 0.00 38.96 2.01
833 844 6.115446 CAGCAACCAACTCTCTGGATATTAA 58.885 40.000 0.00 0.00 38.96 1.40
834 845 5.396772 CCAGCAACCAACTCTCTGGATATTA 60.397 44.000 0.53 0.00 45.31 0.98
835 846 4.521146 CAGCAACCAACTCTCTGGATATT 58.479 43.478 0.00 0.00 38.96 1.28
836 847 3.118112 CCAGCAACCAACTCTCTGGATAT 60.118 47.826 0.53 0.00 45.31 1.63
837 848 2.237143 CCAGCAACCAACTCTCTGGATA 59.763 50.000 0.53 0.00 45.31 2.59
838 849 1.004044 CCAGCAACCAACTCTCTGGAT 59.996 52.381 0.53 0.00 45.31 3.41
839 850 0.397941 CCAGCAACCAACTCTCTGGA 59.602 55.000 0.53 0.00 45.31 3.86
840 851 0.607489 CCCAGCAACCAACTCTCTGG 60.607 60.000 0.00 0.00 42.87 3.86
841 852 1.239968 GCCCAGCAACCAACTCTCTG 61.240 60.000 0.00 0.00 0.00 3.35
920 935 5.327732 AGTTTGTCCATTGTCTCATCCATT 58.672 37.500 0.00 0.00 0.00 3.16
1291 1306 0.039978 CGATACGCTTCAGATCCGCT 60.040 55.000 0.00 0.00 0.00 5.52
1303 1318 2.031857 ACGAGGAGAAAGATCGATACGC 60.032 50.000 0.00 0.00 39.66 4.42
1464 1479 7.581011 CGCATGTATGTGTGTATGTATGTAT 57.419 36.000 0.00 0.00 33.79 2.29
1466 1481 5.905480 CGCATGTATGTGTGTATGTATGT 57.095 39.130 0.00 0.00 33.79 2.29
1477 1492 0.933097 GAGGCAGACGCATGTATGTG 59.067 55.000 4.00 4.00 39.51 3.21
1498 1521 1.734465 GTGTCATGCAGCAACCTAGAC 59.266 52.381 0.00 3.89 0.00 2.59
1533 1556 0.939419 TGGATGCGATGCGATTCAAG 59.061 50.000 0.00 0.00 0.00 3.02
1758 1781 3.667217 ATGGAATTGGGCGCCTGCT 62.667 57.895 28.56 8.61 42.25 4.24
1812 1835 1.296715 GGAGCTGATGGTGAACGGT 59.703 57.895 0.00 0.00 0.00 4.83
1968 1991 2.863137 GTTGTTGTGAACGTACGGGTAA 59.137 45.455 21.06 4.53 0.00 2.85
1980 2003 2.897846 CCACCGCCGTTGTTGTGA 60.898 61.111 0.00 0.00 0.00 3.58
2079 2102 0.389391 CCGCGTACTCCATGGAAGAT 59.611 55.000 17.00 6.97 0.00 2.40
2202 2225 2.916640 TGCTGATGTGCCATTTCGATA 58.083 42.857 0.00 0.00 0.00 2.92
2382 2411 1.405872 ATAACCCGCACGACTCCATA 58.594 50.000 0.00 0.00 0.00 2.74
2423 2452 1.320344 CCATTGCAGCTGCTCCATGT 61.320 55.000 36.61 14.87 42.66 3.21
2492 2521 4.499696 GGCCTCAATTAAAACATGGATCGG 60.500 45.833 0.00 0.00 0.00 4.18
2563 2592 4.221924 TGACATGGACGGTCTGAAATTCTA 59.778 41.667 8.23 0.00 36.26 2.10
2679 2715 7.934665 TGAAGCAGACCTTACTTAAACAACATA 59.065 33.333 0.00 0.00 32.78 2.29
2729 2770 3.119137 GGAGTACCATTTTTGCACCATCC 60.119 47.826 0.00 0.00 35.97 3.51
2770 2826 5.298347 ACTACACTAGTGTCAAAAAGGCTC 58.702 41.667 31.11 0.00 43.74 4.70
2800 3115 5.568825 GCGGCTATGAAATATACTTCCTCCA 60.569 44.000 0.00 0.00 0.00 3.86
2804 3119 4.631813 CCTGCGGCTATGAAATATACTTCC 59.368 45.833 0.00 0.00 0.00 3.46
2806 3121 4.997395 CACCTGCGGCTATGAAATATACTT 59.003 41.667 0.00 0.00 0.00 2.24
2889 3204 6.147821 ACTTGTTCCTTCACATGAGATTAACG 59.852 38.462 0.00 0.00 0.00 3.18
2961 3276 6.086765 GCATAAATTGACGAACAACTTGTCTG 59.913 38.462 0.00 0.00 41.52 3.51
3061 4585 1.299541 CAATGCGTGGTCATCCCTAC 58.700 55.000 0.00 0.00 0.00 3.18
3085 4610 8.134261 GGAGATTGCTTGATAGATTTCTTTTCC 58.866 37.037 0.00 0.00 0.00 3.13
3090 4615 8.763984 AATTGGAGATTGCTTGATAGATTTCT 57.236 30.769 0.00 0.00 0.00 2.52
3098 4623 7.123098 TGTGATGTAAATTGGAGATTGCTTGAT 59.877 33.333 0.00 0.00 0.00 2.57
3129 4654 7.745620 AAAGTTGTTACTAGCAAGCTACAAT 57.254 32.000 10.30 0.00 34.08 2.71
3211 4736 8.534333 TTCTCGCCATAAAATATGACATAGTC 57.466 34.615 0.98 0.00 0.00 2.59
3278 4803 0.902984 TGTAGTGGCCGGTGTGATCT 60.903 55.000 1.90 0.00 0.00 2.75
3282 4807 2.210116 GATAATGTAGTGGCCGGTGTG 58.790 52.381 1.90 0.00 0.00 3.82
3283 4808 1.202486 CGATAATGTAGTGGCCGGTGT 60.202 52.381 1.90 0.00 0.00 4.16
3423 4948 1.171308 CCTGTTTGGTGAGCCATCAG 58.829 55.000 10.26 10.26 45.56 2.90
3431 4956 2.664851 CGCGCTCCTGTTTGGTGA 60.665 61.111 5.56 0.00 37.07 4.02
3432 4957 3.726517 CCGCGCTCCTGTTTGGTG 61.727 66.667 5.56 0.00 37.07 4.17
3433 4958 4.250305 ACCGCGCTCCTGTTTGGT 62.250 61.111 5.56 0.00 37.07 3.67
3434 4959 3.423154 GACCGCGCTCCTGTTTGG 61.423 66.667 5.56 0.00 37.10 3.28
3436 4961 3.986006 TCGACCGCGCTCCTGTTT 61.986 61.111 5.56 0.00 37.46 2.83
3454 4980 0.457851 AGGAGGAACGCTCTGATTCG 59.542 55.000 0.00 0.00 0.00 3.34
3455 4981 1.754226 AGAGGAGGAACGCTCTGATTC 59.246 52.381 0.00 0.00 0.00 2.52
3487 5015 4.315941 GCGGCGGGAGGGGAATAG 62.316 72.222 9.78 0.00 0.00 1.73
3502 5030 4.767255 GTCTCTGGGTGGCAGGCG 62.767 72.222 0.00 0.00 0.00 5.52
3509 5037 1.051812 AGGACAACTGTCTCTGGGTG 58.948 55.000 9.60 0.00 44.20 4.61
3510 5038 1.051812 CAGGACAACTGTCTCTGGGT 58.948 55.000 9.60 0.00 44.20 4.51
3552 5080 3.083600 GAAGTCGTGATTGGCGCCG 62.084 63.158 23.90 8.73 0.00 6.46
3565 5093 1.227973 GGCGGGATCCATGGAAGTC 60.228 63.158 20.67 12.87 0.00 3.01
3586 5114 1.352687 GGGATCTGATAGAAAGGGGCC 59.647 57.143 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.