Multiple sequence alignment - TraesCS2D01G232500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G232500 chr2D 100.000 6083 0 0 1 6083 205613218 205619300 0.000000e+00 11234.0
1 TraesCS2D01G232500 chr2D 86.700 203 19 4 494 692 136462799 136462997 1.030000e-52 219.0
2 TraesCS2D01G232500 chr2A 93.486 3101 107 30 3050 6083 277605556 277602484 0.000000e+00 4519.0
3 TraesCS2D01G232500 chr2A 91.988 1922 87 26 762 2641 277608026 277606130 0.000000e+00 2634.0
4 TraesCS2D01G232500 chr2A 95.833 312 12 1 2645 2956 277605887 277605577 2.530000e-138 503.0
5 TraesCS2D01G232500 chr2A 89.071 183 18 2 504 684 4904706 4904888 6.130000e-55 226.0
6 TraesCS2D01G232500 chr2B 93.069 1991 92 17 684 2641 259775826 259777803 0.000000e+00 2870.0
7 TraesCS2D01G232500 chr2B 93.140 1720 76 24 2646 4341 259778048 259779749 0.000000e+00 2484.0
8 TraesCS2D01G232500 chr2B 93.666 1263 55 12 4341 5590 259780481 259781731 0.000000e+00 1866.0
9 TraesCS2D01G232500 chr2B 90.784 510 23 6 5591 6083 259782004 259782506 0.000000e+00 660.0
10 TraesCS2D01G232500 chr7A 89.674 184 17 1 501 682 730830674 730830857 3.670000e-57 233.0
11 TraesCS2D01G232500 chr7A 89.560 182 18 1 503 683 707996288 707996107 4.740000e-56 230.0
12 TraesCS2D01G232500 chr7A 89.189 185 16 3 503 685 444984062 444983880 1.710000e-55 228.0
13 TraesCS2D01G232500 chr1D 89.674 184 17 2 503 685 338270494 338270312 3.670000e-57 233.0
14 TraesCS2D01G232500 chr4A 87.940 199 21 1 494 692 36611457 36611262 1.320000e-56 231.0
15 TraesCS2D01G232500 chr3A 89.071 183 18 2 502 684 92270735 92270555 6.130000e-55 226.0
16 TraesCS2D01G232500 chr5B 87.374 198 19 5 500 693 462123131 462123326 7.940000e-54 222.0
17 TraesCS2D01G232500 chr6D 92.857 84 6 0 3930 4013 330111412 330111495 8.280000e-24 122.0
18 TraesCS2D01G232500 chr6A 86.957 92 7 5 3926 4015 19885458 19885546 1.400000e-16 99.0
19 TraesCS2D01G232500 chr7B 90.476 63 6 0 3951 4013 439418194 439418132 3.910000e-12 84.2
20 TraesCS2D01G232500 chr7B 100.000 29 0 0 3986 4014 593642622 593642594 3.000000e-03 54.7
21 TraesCS2D01G232500 chr1A 84.524 84 13 0 3930 4013 574637064 574636981 3.910000e-12 84.2
22 TraesCS2D01G232500 chr4D 91.667 48 3 1 3953 3999 507279469 507279422 1.420000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G232500 chr2D 205613218 205619300 6082 False 11234 11234 100.00000 1 6083 1 chr2D.!!$F2 6082
1 TraesCS2D01G232500 chr2A 277602484 277608026 5542 True 2552 4519 93.76900 762 6083 3 chr2A.!!$R1 5321
2 TraesCS2D01G232500 chr2B 259775826 259782506 6680 False 1970 2870 92.66475 684 6083 4 chr2B.!!$F1 5399

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.037975 TTCTCGTTCGGTTGCCTACC 60.038 55.000 0.00 0.00 44.03 3.18 F
85 86 0.177141 ACATGGCCGTTGTAGCGTAT 59.823 50.000 9.27 0.00 0.00 3.06 F
707 708 0.178961 GAAAACCTGCTCTGGGGGTT 60.179 55.000 0.00 0.00 44.11 4.11 F
738 739 0.179000 GCCCAGTACTGTCCAGGATG 59.821 60.000 21.18 3.53 0.00 3.51 F
1465 1485 0.250124 TGGGACGCTTACCTTGTGTG 60.250 55.000 0.00 0.00 0.00 3.82 F
2812 3101 0.961019 TCACCAATCAAGGCAGTTGC 59.039 50.000 0.00 0.00 35.94 4.17 F
4314 4628 1.827789 CTCTCTCTCTCTGCGGGGG 60.828 68.421 0.00 0.00 0.00 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1294 1311 0.102844 GCTGAGCTGAGCTGGTAGAG 59.897 60.000 18.71 0.52 39.88 2.43 R
1302 1319 0.383231 GAGAGAGAGCTGAGCTGAGC 59.617 60.000 18.32 18.32 39.88 4.26 R
2489 2537 1.526575 AAACCCCATCAACAGCAGCG 61.527 55.000 0.00 0.00 0.00 5.18 R
2728 3017 2.150397 ATCGTATAAGCGAACCTGGC 57.850 50.000 0.00 0.00 44.38 4.85 R
3273 3577 0.744281 TGCTACGCAATCTCCGATCA 59.256 50.000 0.00 0.00 34.76 2.92 R
4380 5430 2.014857 CAATGGCCACTCTCACATCTG 58.985 52.381 8.16 0.00 0.00 2.90 R
5510 6592 2.355837 TCTGCAACACGACTCCGC 60.356 61.111 0.00 0.00 39.95 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.959282 CTTGATTGGGCTCCCTATTGC 59.041 52.381 6.50 0.00 36.94 3.56
21 22 0.925558 TGATTGGGCTCCCTATTGCA 59.074 50.000 6.50 0.00 36.94 4.08
22 23 1.322442 GATTGGGCTCCCTATTGCAC 58.678 55.000 6.50 0.00 36.94 4.57
23 24 0.466189 ATTGGGCTCCCTATTGCACG 60.466 55.000 6.50 0.00 34.94 5.34
24 25 2.902343 GGGCTCCCTATTGCACGC 60.902 66.667 0.00 0.00 0.00 5.34
25 26 2.902343 GGCTCCCTATTGCACGCC 60.902 66.667 0.00 0.00 0.00 5.68
26 27 2.124736 GCTCCCTATTGCACGCCA 60.125 61.111 0.00 0.00 0.00 5.69
27 28 1.526917 GCTCCCTATTGCACGCCAT 60.527 57.895 0.00 0.00 0.00 4.40
28 29 1.103398 GCTCCCTATTGCACGCCATT 61.103 55.000 0.00 0.00 0.00 3.16
29 30 0.664761 CTCCCTATTGCACGCCATTG 59.335 55.000 0.00 0.00 0.00 2.82
30 31 1.066257 CCCTATTGCACGCCATTGC 59.934 57.895 0.00 0.00 43.31 3.56
36 37 4.895854 GCACGCCATTGCATTTCT 57.104 50.000 0.00 0.00 42.49 2.52
37 38 3.126729 GCACGCCATTGCATTTCTT 57.873 47.368 0.00 0.00 42.49 2.52
38 39 1.431496 GCACGCCATTGCATTTCTTT 58.569 45.000 0.00 0.00 42.49 2.52
39 40 1.391144 GCACGCCATTGCATTTCTTTC 59.609 47.619 0.00 0.00 42.49 2.62
40 41 2.674954 CACGCCATTGCATTTCTTTCA 58.325 42.857 0.00 0.00 37.32 2.69
41 42 3.255725 CACGCCATTGCATTTCTTTCAT 58.744 40.909 0.00 0.00 37.32 2.57
42 43 3.061563 CACGCCATTGCATTTCTTTCATG 59.938 43.478 0.00 0.00 37.32 3.07
43 44 3.255725 CGCCATTGCATTTCTTTCATGT 58.744 40.909 0.00 0.00 37.32 3.21
44 45 3.680937 CGCCATTGCATTTCTTTCATGTT 59.319 39.130 0.00 0.00 37.32 2.71
45 46 4.434989 CGCCATTGCATTTCTTTCATGTTG 60.435 41.667 0.00 0.00 37.32 3.33
46 47 4.453136 GCCATTGCATTTCTTTCATGTTGT 59.547 37.500 0.00 0.00 37.47 3.32
47 48 5.049267 GCCATTGCATTTCTTTCATGTTGTT 60.049 36.000 0.00 0.00 37.47 2.83
48 49 6.595794 CCATTGCATTTCTTTCATGTTGTTC 58.404 36.000 0.00 0.00 0.00 3.18
49 50 6.425721 CCATTGCATTTCTTTCATGTTGTTCT 59.574 34.615 0.00 0.00 0.00 3.01
50 51 7.359765 CCATTGCATTTCTTTCATGTTGTTCTC 60.360 37.037 0.00 0.00 0.00 2.87
51 52 5.214417 TGCATTTCTTTCATGTTGTTCTCG 58.786 37.500 0.00 0.00 0.00 4.04
52 53 5.215160 GCATTTCTTTCATGTTGTTCTCGT 58.785 37.500 0.00 0.00 0.00 4.18
53 54 5.687285 GCATTTCTTTCATGTTGTTCTCGTT 59.313 36.000 0.00 0.00 0.00 3.85
54 55 6.129352 GCATTTCTTTCATGTTGTTCTCGTTC 60.129 38.462 0.00 0.00 0.00 3.95
55 56 4.708868 TCTTTCATGTTGTTCTCGTTCG 57.291 40.909 0.00 0.00 0.00 3.95
56 57 3.493129 TCTTTCATGTTGTTCTCGTTCGG 59.507 43.478 0.00 0.00 0.00 4.30
57 58 2.519377 TCATGTTGTTCTCGTTCGGT 57.481 45.000 0.00 0.00 0.00 4.69
58 59 2.828877 TCATGTTGTTCTCGTTCGGTT 58.171 42.857 0.00 0.00 0.00 4.44
59 60 2.542178 TCATGTTGTTCTCGTTCGGTTG 59.458 45.455 0.00 0.00 0.00 3.77
60 61 0.653636 TGTTGTTCTCGTTCGGTTGC 59.346 50.000 0.00 0.00 0.00 4.17
61 62 0.041576 GTTGTTCTCGTTCGGTTGCC 60.042 55.000 0.00 0.00 0.00 4.52
62 63 0.179067 TTGTTCTCGTTCGGTTGCCT 60.179 50.000 0.00 0.00 0.00 4.75
63 64 0.675083 TGTTCTCGTTCGGTTGCCTA 59.325 50.000 0.00 0.00 0.00 3.93
64 65 1.066136 GTTCTCGTTCGGTTGCCTAC 58.934 55.000 0.00 0.00 0.00 3.18
65 66 0.037975 TTCTCGTTCGGTTGCCTACC 60.038 55.000 0.00 0.00 44.03 3.18
72 73 3.603365 GGTTGCCTACCACATGGC 58.397 61.111 0.00 0.00 46.92 4.40
76 77 2.045340 GCCTACCACATGGCCGTT 60.045 61.111 0.00 0.00 43.11 4.44
77 78 2.406616 GCCTACCACATGGCCGTTG 61.407 63.158 0.00 0.00 43.11 4.10
78 79 1.002624 CCTACCACATGGCCGTTGT 60.003 57.895 5.35 5.35 39.32 3.32
79 80 0.250793 CCTACCACATGGCCGTTGTA 59.749 55.000 10.53 4.98 39.32 2.41
80 81 1.651987 CTACCACATGGCCGTTGTAG 58.348 55.000 10.53 10.36 39.32 2.74
81 82 0.391927 TACCACATGGCCGTTGTAGC 60.392 55.000 10.53 0.00 39.32 3.58
82 83 2.749865 CCACATGGCCGTTGTAGCG 61.750 63.158 10.53 0.12 0.00 4.26
83 84 2.032634 CACATGGCCGTTGTAGCGT 61.033 57.895 10.53 0.00 0.00 5.07
84 85 0.738063 CACATGGCCGTTGTAGCGTA 60.738 55.000 10.53 0.00 0.00 4.42
85 86 0.177141 ACATGGCCGTTGTAGCGTAT 59.823 50.000 9.27 0.00 0.00 3.06
86 87 1.295792 CATGGCCGTTGTAGCGTATT 58.704 50.000 0.00 0.00 0.00 1.89
87 88 1.668751 CATGGCCGTTGTAGCGTATTT 59.331 47.619 0.00 0.00 0.00 1.40
88 89 1.810959 TGGCCGTTGTAGCGTATTTT 58.189 45.000 0.00 0.00 0.00 1.82
89 90 2.152830 TGGCCGTTGTAGCGTATTTTT 58.847 42.857 0.00 0.00 0.00 1.94
118 119 8.856153 TTGTAAAAGATAGCTTGGTTGTATGA 57.144 30.769 0.00 0.00 33.79 2.15
119 120 9.461312 TTGTAAAAGATAGCTTGGTTGTATGAT 57.539 29.630 0.00 0.00 33.79 2.45
235 236 9.771915 CACAAAATTATAAAAATGTTCATGGGC 57.228 29.630 0.00 0.00 0.00 5.36
236 237 9.737844 ACAAAATTATAAAAATGTTCATGGGCT 57.262 25.926 0.00 0.00 0.00 5.19
246 247 9.737844 AAAAATGTTCATGGGCTTATAAATTGT 57.262 25.926 0.00 0.00 0.00 2.71
247 248 8.947055 AAATGTTCATGGGCTTATAAATTGTC 57.053 30.769 0.00 0.00 0.00 3.18
248 249 7.658525 ATGTTCATGGGCTTATAAATTGTCA 57.341 32.000 0.00 0.00 0.00 3.58
249 250 7.473735 TGTTCATGGGCTTATAAATTGTCAA 57.526 32.000 0.00 0.00 0.00 3.18
250 251 7.901029 TGTTCATGGGCTTATAAATTGTCAAA 58.099 30.769 0.00 0.00 0.00 2.69
251 252 8.370940 TGTTCATGGGCTTATAAATTGTCAAAA 58.629 29.630 0.00 0.00 0.00 2.44
252 253 9.213799 GTTCATGGGCTTATAAATTGTCAAAAA 57.786 29.630 0.00 0.00 0.00 1.94
287 288 7.730672 TCCATGGATTTGGAAAATATTCACA 57.269 32.000 11.44 0.00 42.82 3.58
288 289 8.143673 TCCATGGATTTGGAAAATATTCACAA 57.856 30.769 11.44 0.00 42.82 3.33
289 290 8.600668 TCCATGGATTTGGAAAATATTCACAAA 58.399 29.630 11.44 11.90 42.82 2.83
290 291 9.398538 CCATGGATTTGGAAAATATTCACAAAT 57.601 29.630 5.56 17.61 42.53 2.32
293 294 9.656040 TGGATTTGGAAAATATTCACAAATCTG 57.344 29.630 28.43 0.00 46.42 2.90
294 295 9.874205 GGATTTGGAAAATATTCACAAATCTGA 57.126 29.630 28.43 9.46 46.42 3.27
305 306 7.992180 ATTCACAAATCTGAAAACTGTTCAC 57.008 32.000 0.00 0.00 33.85 3.18
306 307 5.568482 TCACAAATCTGAAAACTGTTCACG 58.432 37.500 0.00 0.00 0.00 4.35
307 308 5.352846 TCACAAATCTGAAAACTGTTCACGA 59.647 36.000 0.00 0.00 0.00 4.35
308 309 6.027131 CACAAATCTGAAAACTGTTCACGAA 58.973 36.000 0.00 0.00 0.00 3.85
309 310 6.692681 CACAAATCTGAAAACTGTTCACGAAT 59.307 34.615 0.00 0.00 0.00 3.34
310 311 7.220683 CACAAATCTGAAAACTGTTCACGAATT 59.779 33.333 0.00 0.00 0.00 2.17
311 312 7.759433 ACAAATCTGAAAACTGTTCACGAATTT 59.241 29.630 0.00 0.00 0.00 1.82
312 313 8.594687 CAAATCTGAAAACTGTTCACGAATTTT 58.405 29.630 0.00 0.00 0.00 1.82
313 314 9.796120 AAATCTGAAAACTGTTCACGAATTTTA 57.204 25.926 0.00 0.00 0.00 1.52
314 315 9.796120 AATCTGAAAACTGTTCACGAATTTTAA 57.204 25.926 0.00 0.00 0.00 1.52
315 316 9.796120 ATCTGAAAACTGTTCACGAATTTTAAA 57.204 25.926 0.00 0.00 0.00 1.52
316 317 9.627395 TCTGAAAACTGTTCACGAATTTTAAAA 57.373 25.926 2.51 2.51 0.00 1.52
323 324 9.360093 ACTGTTCACGAATTTTAAAAACATTCA 57.640 25.926 4.44 0.00 0.00 2.57
324 325 9.618410 CTGTTCACGAATTTTAAAAACATTCAC 57.382 29.630 4.44 0.64 0.00 3.18
325 326 9.360093 TGTTCACGAATTTTAAAAACATTCACT 57.640 25.926 4.44 0.00 0.00 3.41
403 404 8.642935 AAAACCAAAGAAAAATGAAAAAGGGA 57.357 26.923 0.00 0.00 0.00 4.20
404 405 8.642935 AAACCAAAGAAAAATGAAAAAGGGAA 57.357 26.923 0.00 0.00 0.00 3.97
405 406 7.864108 ACCAAAGAAAAATGAAAAAGGGAAG 57.136 32.000 0.00 0.00 0.00 3.46
406 407 7.629157 ACCAAAGAAAAATGAAAAAGGGAAGA 58.371 30.769 0.00 0.00 0.00 2.87
407 408 8.274322 ACCAAAGAAAAATGAAAAAGGGAAGAT 58.726 29.630 0.00 0.00 0.00 2.40
408 409 9.777297 CCAAAGAAAAATGAAAAAGGGAAGATA 57.223 29.630 0.00 0.00 0.00 1.98
439 440 4.937696 AAAAAGAAAACCGGCAAAACTG 57.062 36.364 0.00 0.00 0.00 3.16
440 441 3.603158 AAAGAAAACCGGCAAAACTGT 57.397 38.095 0.00 0.00 0.00 3.55
441 442 3.603158 AAGAAAACCGGCAAAACTGTT 57.397 38.095 0.00 0.00 0.00 3.16
442 443 2.887337 AGAAAACCGGCAAAACTGTTG 58.113 42.857 0.00 0.00 0.00 3.33
443 444 2.494073 AGAAAACCGGCAAAACTGTTGA 59.506 40.909 0.00 0.00 0.00 3.18
444 445 2.577449 AAACCGGCAAAACTGTTGAG 57.423 45.000 0.00 0.00 0.00 3.02
445 446 1.757682 AACCGGCAAAACTGTTGAGA 58.242 45.000 0.00 0.00 0.00 3.27
446 447 1.757682 ACCGGCAAAACTGTTGAGAA 58.242 45.000 0.00 0.00 0.00 2.87
447 448 2.096248 ACCGGCAAAACTGTTGAGAAA 58.904 42.857 0.00 0.00 0.00 2.52
448 449 2.159296 ACCGGCAAAACTGTTGAGAAAC 60.159 45.455 0.00 0.00 0.00 2.78
449 450 2.159310 CCGGCAAAACTGTTGAGAAACA 60.159 45.455 0.00 0.00 0.00 2.83
450 451 3.490761 CCGGCAAAACTGTTGAGAAACAT 60.491 43.478 0.00 0.00 31.47 2.71
451 452 3.730715 CGGCAAAACTGTTGAGAAACATC 59.269 43.478 0.00 0.00 31.47 3.06
452 453 3.730715 GGCAAAACTGTTGAGAAACATCG 59.269 43.478 0.00 0.00 31.47 3.84
453 454 3.730715 GCAAAACTGTTGAGAAACATCGG 59.269 43.478 0.00 0.00 31.47 4.18
454 455 4.497340 GCAAAACTGTTGAGAAACATCGGA 60.497 41.667 0.00 0.00 31.47 4.55
455 456 5.577835 CAAAACTGTTGAGAAACATCGGAA 58.422 37.500 0.00 0.00 31.47 4.30
456 457 5.828299 AAACTGTTGAGAAACATCGGAAA 57.172 34.783 0.00 0.00 31.47 3.13
457 458 5.828299 AACTGTTGAGAAACATCGGAAAA 57.172 34.783 0.00 0.00 31.47 2.29
458 459 5.828299 ACTGTTGAGAAACATCGGAAAAA 57.172 34.783 0.00 0.00 31.47 1.94
485 486 0.673985 AAAAAGGGCGAAGAACCTGC 59.326 50.000 0.00 0.00 36.56 4.85
486 487 0.178990 AAAAGGGCGAAGAACCTGCT 60.179 50.000 0.00 0.00 36.56 4.24
487 488 0.690762 AAAGGGCGAAGAACCTGCTA 59.309 50.000 0.00 0.00 36.56 3.49
488 489 0.250513 AAGGGCGAAGAACCTGCTAG 59.749 55.000 0.00 0.00 36.56 3.42
489 490 0.614979 AGGGCGAAGAACCTGCTAGA 60.615 55.000 0.00 0.00 35.16 2.43
490 491 0.249398 GGGCGAAGAACCTGCTAGAA 59.751 55.000 0.00 0.00 0.00 2.10
491 492 1.360820 GGCGAAGAACCTGCTAGAAC 58.639 55.000 0.00 0.00 0.00 3.01
492 493 0.992802 GCGAAGAACCTGCTAGAACG 59.007 55.000 0.00 0.00 0.00 3.95
493 494 1.669211 GCGAAGAACCTGCTAGAACGT 60.669 52.381 0.00 0.00 0.00 3.99
494 495 2.673833 CGAAGAACCTGCTAGAACGTT 58.326 47.619 0.00 0.00 0.00 3.99
495 496 3.057734 CGAAGAACCTGCTAGAACGTTT 58.942 45.455 0.46 0.00 0.00 3.60
496 497 3.493503 CGAAGAACCTGCTAGAACGTTTT 59.506 43.478 0.46 0.00 0.00 2.43
497 498 4.376109 CGAAGAACCTGCTAGAACGTTTTC 60.376 45.833 0.46 0.00 0.00 2.29
517 518 8.609478 GTTTTCGAAACAGTTTGTCTAATTCA 57.391 30.769 10.79 0.00 0.00 2.57
518 519 8.521059 GTTTTCGAAACAGTTTGTCTAATTCAC 58.479 33.333 10.79 0.00 0.00 3.18
519 520 6.912203 TCGAAACAGTTTGTCTAATTCACA 57.088 33.333 2.34 0.00 0.00 3.58
520 521 7.490962 TCGAAACAGTTTGTCTAATTCACAT 57.509 32.000 2.34 0.00 0.00 3.21
521 522 7.572759 TCGAAACAGTTTGTCTAATTCACATC 58.427 34.615 2.34 0.00 0.00 3.06
522 523 7.441157 TCGAAACAGTTTGTCTAATTCACATCT 59.559 33.333 2.34 0.00 0.00 2.90
523 524 8.708742 CGAAACAGTTTGTCTAATTCACATCTA 58.291 33.333 2.34 0.00 0.00 1.98
525 526 9.778741 AAACAGTTTGTCTAATTCACATCTAGA 57.221 29.630 0.00 0.00 0.00 2.43
526 527 9.950496 AACAGTTTGTCTAATTCACATCTAGAT 57.050 29.630 0.00 0.00 0.00 1.98
527 528 9.376075 ACAGTTTGTCTAATTCACATCTAGATG 57.624 33.333 27.63 27.63 44.15 2.90
549 550 8.944029 AGATGTTTTCTAGAAATGTCACATCTG 58.056 33.333 35.51 0.00 44.70 2.90
550 551 8.853077 ATGTTTTCTAGAAATGTCACATCTGA 57.147 30.769 20.27 1.81 27.75 3.27
551 552 8.675705 TGTTTTCTAGAAATGTCACATCTGAA 57.324 30.769 18.37 0.00 0.00 3.02
552 553 8.559536 TGTTTTCTAGAAATGTCACATCTGAAC 58.440 33.333 18.37 9.29 0.00 3.18
553 554 8.778358 GTTTTCTAGAAATGTCACATCTGAACT 58.222 33.333 18.37 0.00 0.00 3.01
554 555 8.539770 TTTCTAGAAATGTCACATCTGAACTC 57.460 34.615 13.99 0.00 0.00 3.01
555 556 6.634805 TCTAGAAATGTCACATCTGAACTCC 58.365 40.000 0.00 0.00 0.00 3.85
556 557 4.583871 AGAAATGTCACATCTGAACTCCC 58.416 43.478 0.00 0.00 0.00 4.30
557 558 4.042062 AGAAATGTCACATCTGAACTCCCA 59.958 41.667 0.00 0.00 0.00 4.37
558 559 2.839486 TGTCACATCTGAACTCCCAC 57.161 50.000 0.00 0.00 0.00 4.61
559 560 2.046292 TGTCACATCTGAACTCCCACA 58.954 47.619 0.00 0.00 0.00 4.17
560 561 2.437651 TGTCACATCTGAACTCCCACAA 59.562 45.455 0.00 0.00 0.00 3.33
561 562 2.808543 GTCACATCTGAACTCCCACAAC 59.191 50.000 0.00 0.00 0.00 3.32
562 563 2.705658 TCACATCTGAACTCCCACAACT 59.294 45.455 0.00 0.00 0.00 3.16
563 564 3.901222 TCACATCTGAACTCCCACAACTA 59.099 43.478 0.00 0.00 0.00 2.24
564 565 4.346709 TCACATCTGAACTCCCACAACTAA 59.653 41.667 0.00 0.00 0.00 2.24
565 566 4.452455 CACATCTGAACTCCCACAACTAAC 59.548 45.833 0.00 0.00 0.00 2.34
566 567 4.102524 ACATCTGAACTCCCACAACTAACA 59.897 41.667 0.00 0.00 0.00 2.41
567 568 4.974645 TCTGAACTCCCACAACTAACAT 57.025 40.909 0.00 0.00 0.00 2.71
568 569 6.013725 ACATCTGAACTCCCACAACTAACATA 60.014 38.462 0.00 0.00 0.00 2.29
569 570 6.037786 TCTGAACTCCCACAACTAACATAG 57.962 41.667 0.00 0.00 0.00 2.23
570 571 4.575885 TGAACTCCCACAACTAACATAGC 58.424 43.478 0.00 0.00 0.00 2.97
571 572 4.041075 TGAACTCCCACAACTAACATAGCA 59.959 41.667 0.00 0.00 0.00 3.49
572 573 4.634012 ACTCCCACAACTAACATAGCAA 57.366 40.909 0.00 0.00 0.00 3.91
573 574 4.324267 ACTCCCACAACTAACATAGCAAC 58.676 43.478 0.00 0.00 0.00 4.17
574 575 4.202419 ACTCCCACAACTAACATAGCAACA 60.202 41.667 0.00 0.00 0.00 3.33
575 576 4.720046 TCCCACAACTAACATAGCAACAA 58.280 39.130 0.00 0.00 0.00 2.83
576 577 4.759693 TCCCACAACTAACATAGCAACAAG 59.240 41.667 0.00 0.00 0.00 3.16
577 578 4.759693 CCCACAACTAACATAGCAACAAGA 59.240 41.667 0.00 0.00 0.00 3.02
578 579 5.240623 CCCACAACTAACATAGCAACAAGAA 59.759 40.000 0.00 0.00 0.00 2.52
579 580 6.238897 CCCACAACTAACATAGCAACAAGAAA 60.239 38.462 0.00 0.00 0.00 2.52
580 581 6.636850 CCACAACTAACATAGCAACAAGAAAC 59.363 38.462 0.00 0.00 0.00 2.78
581 582 7.192913 CACAACTAACATAGCAACAAGAAACA 58.807 34.615 0.00 0.00 0.00 2.83
582 583 7.376866 CACAACTAACATAGCAACAAGAAACAG 59.623 37.037 0.00 0.00 0.00 3.16
583 584 7.282224 ACAACTAACATAGCAACAAGAAACAGA 59.718 33.333 0.00 0.00 0.00 3.41
584 585 7.801716 ACTAACATAGCAACAAGAAACAGAA 57.198 32.000 0.00 0.00 0.00 3.02
585 586 8.220755 ACTAACATAGCAACAAGAAACAGAAA 57.779 30.769 0.00 0.00 0.00 2.52
586 587 8.682710 ACTAACATAGCAACAAGAAACAGAAAA 58.317 29.630 0.00 0.00 0.00 2.29
587 588 9.515020 CTAACATAGCAACAAGAAACAGAAAAA 57.485 29.630 0.00 0.00 0.00 1.94
633 634 4.952262 CACAAACATAGTGGACATCAGG 57.048 45.455 0.00 0.00 33.43 3.86
634 635 4.326826 CACAAACATAGTGGACATCAGGT 58.673 43.478 0.00 0.00 33.43 4.00
635 636 4.761739 CACAAACATAGTGGACATCAGGTT 59.238 41.667 0.00 0.00 33.43 3.50
636 637 5.937540 CACAAACATAGTGGACATCAGGTTA 59.062 40.000 0.00 0.00 33.43 2.85
637 638 6.599244 CACAAACATAGTGGACATCAGGTTAT 59.401 38.462 0.00 0.00 33.43 1.89
638 639 7.768582 CACAAACATAGTGGACATCAGGTTATA 59.231 37.037 0.00 0.00 33.43 0.98
639 640 8.494433 ACAAACATAGTGGACATCAGGTTATAT 58.506 33.333 0.00 0.00 0.00 0.86
640 641 8.777413 CAAACATAGTGGACATCAGGTTATATG 58.223 37.037 0.00 0.00 0.00 1.78
641 642 6.467677 ACATAGTGGACATCAGGTTATATGC 58.532 40.000 0.00 0.00 0.00 3.14
642 643 3.995199 AGTGGACATCAGGTTATATGCG 58.005 45.455 0.00 0.00 0.00 4.73
643 644 3.641436 AGTGGACATCAGGTTATATGCGA 59.359 43.478 0.00 0.00 0.00 5.10
644 645 3.741344 GTGGACATCAGGTTATATGCGAC 59.259 47.826 0.00 0.00 0.00 5.19
645 646 3.386402 TGGACATCAGGTTATATGCGACA 59.614 43.478 0.00 0.00 0.00 4.35
646 647 4.040339 TGGACATCAGGTTATATGCGACAT 59.960 41.667 0.00 0.00 0.00 3.06
647 648 5.245075 TGGACATCAGGTTATATGCGACATA 59.755 40.000 0.00 0.00 0.00 2.29
648 649 6.163476 GGACATCAGGTTATATGCGACATAA 58.837 40.000 4.12 0.00 0.00 1.90
649 650 6.818644 GGACATCAGGTTATATGCGACATAAT 59.181 38.462 4.12 0.00 0.00 1.28
650 651 7.334421 GGACATCAGGTTATATGCGACATAATT 59.666 37.037 4.12 0.00 0.00 1.40
651 652 9.366216 GACATCAGGTTATATGCGACATAATTA 57.634 33.333 4.12 0.00 0.00 1.40
652 653 9.890629 ACATCAGGTTATATGCGACATAATTAT 57.109 29.630 4.12 0.00 0.00 1.28
682 683 7.598278 CATCTAGATGTGTTATAGACAGACCC 58.402 42.308 22.42 0.00 39.39 4.46
683 684 6.912426 TCTAGATGTGTTATAGACAGACCCT 58.088 40.000 0.00 0.00 39.39 4.34
684 685 7.355101 TCTAGATGTGTTATAGACAGACCCTT 58.645 38.462 0.00 0.00 39.39 3.95
685 686 6.472686 AGATGTGTTATAGACAGACCCTTC 57.527 41.667 0.00 0.00 39.39 3.46
695 696 2.037381 GACAGACCCTTCTCGAAAACCT 59.963 50.000 0.00 0.00 0.00 3.50
703 704 0.321671 TCTCGAAAACCTGCTCTGGG 59.678 55.000 0.00 0.00 0.00 4.45
707 708 0.178961 GAAAACCTGCTCTGGGGGTT 60.179 55.000 0.00 0.00 44.11 4.11
713 714 1.915078 CTGCTCTGGGGGTTACAGGG 61.915 65.000 0.00 0.00 39.46 4.45
715 716 1.229853 CTCTGGGGGTTACAGGGGT 60.230 63.158 0.00 0.00 36.62 4.95
731 732 1.597461 GGTCAGGCCCAGTACTGTC 59.403 63.158 21.18 12.18 36.17 3.51
738 739 0.179000 GCCCAGTACTGTCCAGGATG 59.821 60.000 21.18 3.53 0.00 3.51
784 785 8.322091 ACATTATATTATTCCTCGCCTTAAGCT 58.678 33.333 0.00 0.00 40.39 3.74
1095 1112 0.605319 TCAAAGGTACTGCCGCCTTG 60.605 55.000 0.00 0.00 43.66 3.61
1295 1312 4.716977 GACCCCGTCAGTCCCCCT 62.717 72.222 0.00 0.00 32.09 4.79
1296 1313 4.716977 ACCCCGTCAGTCCCCCTC 62.717 72.222 0.00 0.00 0.00 4.30
1297 1314 4.400251 CCCCGTCAGTCCCCCTCT 62.400 72.222 0.00 0.00 0.00 3.69
1298 1315 2.687902 CCCGTCAGTCCCCCTCTA 59.312 66.667 0.00 0.00 0.00 2.43
1299 1316 1.757340 CCCGTCAGTCCCCCTCTAC 60.757 68.421 0.00 0.00 0.00 2.59
1300 1317 1.757340 CCGTCAGTCCCCCTCTACC 60.757 68.421 0.00 0.00 0.00 3.18
1301 1318 1.000019 CGTCAGTCCCCCTCTACCA 60.000 63.158 0.00 0.00 0.00 3.25
1302 1319 1.038130 CGTCAGTCCCCCTCTACCAG 61.038 65.000 0.00 0.00 0.00 4.00
1303 1320 1.001760 TCAGTCCCCCTCTACCAGC 59.998 63.158 0.00 0.00 0.00 4.85
1304 1321 1.002274 CAGTCCCCCTCTACCAGCT 59.998 63.158 0.00 0.00 0.00 4.24
1335 1352 3.023119 TCTCTCTCATGAGCTCTTGGTC 58.977 50.000 24.74 0.00 40.03 4.02
1336 1353 2.101249 CTCTCTCATGAGCTCTTGGTCC 59.899 54.545 24.74 0.00 40.03 4.46
1362 1379 4.150627 CACGGTTGCTCATTCCTATAATCG 59.849 45.833 0.00 0.00 0.00 3.34
1375 1392 7.812309 TTCCTATAATCGCGATTGTCTATTG 57.188 36.000 37.57 24.28 32.50 1.90
1465 1485 0.250124 TGGGACGCTTACCTTGTGTG 60.250 55.000 0.00 0.00 0.00 3.82
1497 1517 7.335673 CAGTTGGTTGTTAATTCCAAAGGTTTT 59.664 33.333 9.43 0.00 41.86 2.43
1545 1565 4.783621 TGGTGATGCTCTGGCCGC 62.784 66.667 0.00 0.00 37.74 6.53
1547 1567 2.437359 GTGATGCTCTGGCCGCTT 60.437 61.111 0.00 0.00 37.74 4.68
1554 1574 1.518903 GCTCTGGCCGCTTTCAAGTT 61.519 55.000 0.00 0.00 0.00 2.66
1674 1694 3.631686 TCACATGCTGATAATTTTCCCCG 59.368 43.478 0.00 0.00 0.00 5.73
1743 1769 9.798994 ATATCATTGAAAAGTTCATTGCTCTTC 57.201 29.630 7.63 0.00 39.58 2.87
1992 2018 4.099727 GGAGGGTGAGTTGACTATAACCTC 59.900 50.000 17.36 17.36 42.15 3.85
2005 2031 5.473931 ACTATAACCTCTAGCATGCGATTG 58.526 41.667 13.01 4.48 0.00 2.67
2050 2097 8.927675 TCCTTTTATTTACCAGCTTTTCTGTA 57.072 30.769 0.00 0.00 41.25 2.74
2083 2130 8.229811 GTGAAAATCATTTAGGAAATTTGTGGC 58.770 33.333 0.00 0.00 0.00 5.01
2182 2230 6.599356 TGTGGTCTGCTAAATCTGTAAGTA 57.401 37.500 0.00 0.00 33.76 2.24
2233 2281 9.442047 AGCTGATATATTAGCAAACTATTGTCC 57.558 33.333 26.09 0.00 41.37 4.02
2234 2282 9.219603 GCTGATATATTAGCAAACTATTGTCCA 57.780 33.333 21.23 0.00 39.03 4.02
2277 2325 1.670083 GCCCCGAGCTAACAACGTT 60.670 57.895 0.00 0.00 38.99 3.99
2350 2398 3.619483 TGATCACCGTAAAATTGTAGCCG 59.381 43.478 0.00 0.00 0.00 5.52
2417 2465 9.914131 GCTAACAGAACTCCAAATTTAATCTTT 57.086 29.630 0.00 0.00 0.00 2.52
2520 2569 5.657826 TGATGGGGTTTTGTTATGATGTG 57.342 39.130 0.00 0.00 0.00 3.21
2521 2570 5.083122 TGATGGGGTTTTGTTATGATGTGT 58.917 37.500 0.00 0.00 0.00 3.72
2550 2599 4.079154 ACATCTGTGTAGTCCCCTCATAGA 60.079 45.833 0.00 0.00 36.63 1.98
2564 2613 9.793259 GTCCCCTCATAGATTGTAAATAATGAA 57.207 33.333 0.00 0.00 0.00 2.57
2586 2635 8.899427 TGAAACCATTTCATTTGCTTAATTGA 57.101 26.923 0.00 0.00 44.21 2.57
2600 2649 6.884187 TGCTTAATTGACGTGTTTCTACTTC 58.116 36.000 0.00 0.00 0.00 3.01
2620 2669 3.873910 TCCTTTTATGCTAGGCAGTGAC 58.126 45.455 0.00 0.00 43.65 3.67
2641 2690 1.442769 AGCTGTGGATGTTTGCTACG 58.557 50.000 0.00 0.00 31.71 3.51
2642 2691 1.001974 AGCTGTGGATGTTTGCTACGA 59.998 47.619 0.00 0.00 31.71 3.43
2643 2692 2.009774 GCTGTGGATGTTTGCTACGAT 58.990 47.619 0.00 0.00 0.00 3.73
2684 2973 2.711978 ATGCTGCACTGATGATGACT 57.288 45.000 3.57 0.00 0.00 3.41
2694 2983 4.093115 CACTGATGATGACTGCTCAACTTC 59.907 45.833 0.00 0.00 0.00 3.01
2699 2988 5.213891 TGATGACTGCTCAACTTCACTAA 57.786 39.130 0.00 0.00 0.00 2.24
2702 2991 4.765273 TGACTGCTCAACTTCACTAACAA 58.235 39.130 0.00 0.00 0.00 2.83
2728 3017 8.663911 ACTAATGGTGTTTTCATTTTGTGTTTG 58.336 29.630 0.00 0.00 36.40 2.93
2744 3033 2.745281 TGTTTGCCAGGTTCGCTTATAC 59.255 45.455 0.00 0.00 0.00 1.47
2812 3101 0.961019 TCACCAATCAAGGCAGTTGC 59.039 50.000 0.00 0.00 35.94 4.17
2918 3207 4.655963 ACAGATGGTGTGCAGTATCTTTT 58.344 39.130 0.00 0.00 38.28 2.27
2947 3236 7.069331 TGGAACTGAGTATTTTTGGAACATGTT 59.931 33.333 11.78 11.78 39.30 2.71
3019 3319 9.964303 TGAATTTTGAAGATTTGAATTTCGAGA 57.036 25.926 0.00 0.00 0.00 4.04
3026 3326 8.260818 TGAAGATTTGAATTTCGAGATAGACCT 58.739 33.333 0.00 0.00 0.00 3.85
3048 3351 6.040247 CCTGTGTTTTCTTAAACTTCAACCC 58.960 40.000 0.00 0.00 43.25 4.11
3070 3373 4.462834 CCATGTGTCACAAGTCTACTCCTA 59.537 45.833 10.28 0.00 0.00 2.94
3126 3429 9.634021 TGTTTTGTATAGGCAATAATGGTATGA 57.366 29.630 0.00 0.00 0.00 2.15
3219 3523 3.251972 GCAGCTAATGGAAATGGTAGAGC 59.748 47.826 0.00 0.00 0.00 4.09
3259 3563 8.414003 AGCATTTCTACATGTTAGAGTTCGATA 58.586 33.333 2.30 0.00 0.00 2.92
3373 3677 6.586463 CCAAGGTACAATGTATGCGAGTATAG 59.414 42.308 0.00 0.00 0.00 1.31
3639 3945 8.780846 TGTTTGTACTTCTTTGAACTAACTCA 57.219 30.769 0.00 0.00 31.67 3.41
3740 4046 9.950680 CTGCGGTATGTCTAAAATTAATTTCAT 57.049 29.630 13.68 13.87 32.27 2.57
3827 4136 8.677300 TCATATTGCTCTAATTGTTTTCTGGTC 58.323 33.333 0.00 0.00 0.00 4.02
3939 4250 4.022155 GGCTACTCTTTATTACTCCCTCCG 60.022 50.000 0.00 0.00 0.00 4.63
4088 4399 9.423061 TGTCGGTGTATATGATAGATGATTTTG 57.577 33.333 0.00 0.00 0.00 2.44
4139 4450 7.988028 ACTCTAGTTAATTGGCCTTTAGTGATC 59.012 37.037 3.32 0.00 0.00 2.92
4140 4451 8.090788 TCTAGTTAATTGGCCTTTAGTGATCT 57.909 34.615 3.32 0.00 0.00 2.75
4141 4452 8.548877 TCTAGTTAATTGGCCTTTAGTGATCTT 58.451 33.333 3.32 0.00 0.00 2.40
4142 4453 9.832445 CTAGTTAATTGGCCTTTAGTGATCTTA 57.168 33.333 3.32 0.00 0.00 2.10
4238 4549 3.036819 TCTATCTCAAGCAGCACCTCAT 58.963 45.455 0.00 0.00 0.00 2.90
4277 4588 4.464008 TCACATTTCTCAGCTGAAGGTTT 58.536 39.130 18.85 0.00 0.00 3.27
4314 4628 1.827789 CTCTCTCTCTCTGCGGGGG 60.828 68.421 0.00 0.00 0.00 5.40
4315 4629 2.277072 CTCTCTCTCTGCGGGGGA 59.723 66.667 0.00 0.00 0.00 4.81
4316 4630 1.827789 CTCTCTCTCTGCGGGGGAG 60.828 68.421 4.90 4.90 0.00 4.30
4380 5430 2.937799 TCCGTTGTTGTTGTGGTAAGTC 59.062 45.455 0.00 0.00 0.00 3.01
4441 5492 6.594788 ATCTTGAATGGTGCTTGTTGTAAT 57.405 33.333 0.00 0.00 0.00 1.89
4587 5648 5.292589 ACCTGTAATCTTAAAATGGCGTACG 59.707 40.000 11.84 11.84 0.00 3.67
4607 5668 4.820897 ACGTCTTAACTGCATCTTGATGA 58.179 39.130 14.09 0.00 0.00 2.92
4761 5822 8.868522 AGAATGTATTTGTTGAAGAGGATGAA 57.131 30.769 0.00 0.00 0.00 2.57
5119 6198 5.097742 TGGAATTATTGACGTCTGACCAT 57.902 39.130 17.92 3.85 0.00 3.55
5354 6436 3.865745 CCGAAGTAGCAATGGTCTAGTTG 59.134 47.826 0.00 0.00 31.75 3.16
5460 6542 3.548745 TGTGTAGGATCTCTGCCAATG 57.451 47.619 0.00 0.00 0.00 2.82
5464 6546 2.953284 AGGATCTCTGCCAATGGATG 57.047 50.000 2.05 0.00 0.00 3.51
5510 6592 7.475015 CAAGTGTTGGGTGAACATATAAGATG 58.525 38.462 0.00 0.00 46.34 2.90
5538 6620 2.096909 CGTGTTGCAGACGAGGTTAAAG 60.097 50.000 13.51 0.00 39.21 1.85
5619 6973 8.719648 CATCTCTCCATATGAATAGTGCTTTTC 58.280 37.037 3.65 0.00 0.00 2.29
5918 7273 1.654137 CGTTTTCAACTGCGCGCTT 60.654 52.632 33.29 16.87 0.00 4.68
5986 7341 3.003275 CGAGCTAGCTCTTTCTCCTGTAG 59.997 52.174 35.36 16.19 40.69 2.74
6005 7371 6.295349 CCTGTAGAAACCAGTTACTCATCAGT 60.295 42.308 0.00 0.00 36.55 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.959282 GCAATAGGGAGCCCAATCAAG 59.041 52.381 8.53 0.00 38.92 3.02
2 3 0.925558 TGCAATAGGGAGCCCAATCA 59.074 50.000 8.53 0.00 38.92 2.57
3 4 1.322442 GTGCAATAGGGAGCCCAATC 58.678 55.000 8.53 0.00 38.92 2.67
4 5 0.466189 CGTGCAATAGGGAGCCCAAT 60.466 55.000 8.53 0.00 38.92 3.16
5 6 1.077787 CGTGCAATAGGGAGCCCAA 60.078 57.895 8.53 0.00 38.92 4.12
6 7 2.589540 CGTGCAATAGGGAGCCCA 59.410 61.111 8.53 0.00 38.92 5.36
7 8 2.902343 GCGTGCAATAGGGAGCCC 60.902 66.667 0.00 0.00 0.00 5.19
8 9 2.902343 GGCGTGCAATAGGGAGCC 60.902 66.667 0.00 0.00 37.61 4.70
9 10 1.103398 AATGGCGTGCAATAGGGAGC 61.103 55.000 0.00 0.00 0.00 4.70
10 11 0.664761 CAATGGCGTGCAATAGGGAG 59.335 55.000 0.00 0.00 0.00 4.30
11 12 1.383456 GCAATGGCGTGCAATAGGGA 61.383 55.000 7.99 0.00 44.29 4.20
12 13 1.066257 GCAATGGCGTGCAATAGGG 59.934 57.895 7.99 0.00 44.29 3.53
13 14 4.715983 GCAATGGCGTGCAATAGG 57.284 55.556 7.99 0.00 44.29 2.57
19 20 1.391144 GAAAGAAATGCAATGGCGTGC 59.609 47.619 6.06 6.06 45.35 5.34
20 21 2.674954 TGAAAGAAATGCAATGGCGTG 58.325 42.857 0.00 0.00 45.35 5.34
21 22 3.255725 CATGAAAGAAATGCAATGGCGT 58.744 40.909 0.00 0.00 45.35 5.68
22 23 3.255725 ACATGAAAGAAATGCAATGGCG 58.744 40.909 0.00 0.00 45.35 5.69
23 24 4.453136 ACAACATGAAAGAAATGCAATGGC 59.547 37.500 0.00 0.00 41.68 4.40
24 25 6.425721 AGAACAACATGAAAGAAATGCAATGG 59.574 34.615 0.00 0.00 0.00 3.16
25 26 7.416154 AGAACAACATGAAAGAAATGCAATG 57.584 32.000 0.00 0.00 0.00 2.82
26 27 6.364165 CGAGAACAACATGAAAGAAATGCAAT 59.636 34.615 0.00 0.00 0.00 3.56
27 28 5.686841 CGAGAACAACATGAAAGAAATGCAA 59.313 36.000 0.00 0.00 0.00 4.08
28 29 5.214417 CGAGAACAACATGAAAGAAATGCA 58.786 37.500 0.00 0.00 0.00 3.96
29 30 5.215160 ACGAGAACAACATGAAAGAAATGC 58.785 37.500 0.00 0.00 0.00 3.56
30 31 6.085458 CGAACGAGAACAACATGAAAGAAATG 59.915 38.462 0.00 0.00 0.00 2.32
31 32 6.136071 CGAACGAGAACAACATGAAAGAAAT 58.864 36.000 0.00 0.00 0.00 2.17
32 33 5.498159 CGAACGAGAACAACATGAAAGAAA 58.502 37.500 0.00 0.00 0.00 2.52
33 34 4.025229 CCGAACGAGAACAACATGAAAGAA 60.025 41.667 0.00 0.00 0.00 2.52
34 35 3.493129 CCGAACGAGAACAACATGAAAGA 59.507 43.478 0.00 0.00 0.00 2.52
35 36 3.247648 ACCGAACGAGAACAACATGAAAG 59.752 43.478 0.00 0.00 0.00 2.62
36 37 3.199677 ACCGAACGAGAACAACATGAAA 58.800 40.909 0.00 0.00 0.00 2.69
37 38 2.828877 ACCGAACGAGAACAACATGAA 58.171 42.857 0.00 0.00 0.00 2.57
38 39 2.519377 ACCGAACGAGAACAACATGA 57.481 45.000 0.00 0.00 0.00 3.07
39 40 2.903678 CAACCGAACGAGAACAACATG 58.096 47.619 0.00 0.00 0.00 3.21
40 41 1.263217 GCAACCGAACGAGAACAACAT 59.737 47.619 0.00 0.00 0.00 2.71
41 42 0.653636 GCAACCGAACGAGAACAACA 59.346 50.000 0.00 0.00 0.00 3.33
42 43 0.041576 GGCAACCGAACGAGAACAAC 60.042 55.000 0.00 0.00 0.00 3.32
43 44 0.179067 AGGCAACCGAACGAGAACAA 60.179 50.000 0.00 0.00 37.17 2.83
44 45 0.675083 TAGGCAACCGAACGAGAACA 59.325 50.000 0.00 0.00 37.17 3.18
45 46 1.066136 GTAGGCAACCGAACGAGAAC 58.934 55.000 0.00 0.00 37.17 3.01
46 47 0.037975 GGTAGGCAACCGAACGAGAA 60.038 55.000 0.00 0.00 38.88 2.87
47 48 1.588082 GGTAGGCAACCGAACGAGA 59.412 57.895 0.00 0.00 38.88 4.04
48 49 4.180496 GGTAGGCAACCGAACGAG 57.820 61.111 0.00 0.00 38.88 4.18
60 61 0.250793 TACAACGGCCATGTGGTAGG 59.749 55.000 18.86 0.62 37.57 3.18
61 62 1.651987 CTACAACGGCCATGTGGTAG 58.348 55.000 18.86 14.35 39.37 3.18
62 63 0.391927 GCTACAACGGCCATGTGGTA 60.392 55.000 18.86 9.20 37.57 3.25
63 64 1.674322 GCTACAACGGCCATGTGGT 60.674 57.895 18.86 8.53 37.57 4.16
64 65 2.749865 CGCTACAACGGCCATGTGG 61.750 63.158 18.86 17.02 38.53 4.17
65 66 0.738063 TACGCTACAACGGCCATGTG 60.738 55.000 18.86 8.40 37.37 3.21
66 67 0.177141 ATACGCTACAACGGCCATGT 59.823 50.000 14.92 14.92 37.37 3.21
67 68 1.295792 AATACGCTACAACGGCCATG 58.704 50.000 2.24 3.30 37.37 3.66
68 69 2.032680 AAATACGCTACAACGGCCAT 57.967 45.000 2.24 0.00 37.37 4.40
69 70 1.810959 AAAATACGCTACAACGGCCA 58.189 45.000 2.24 0.00 37.37 5.36
70 71 2.905959 AAAAATACGCTACAACGGCC 57.094 45.000 0.00 0.00 37.37 6.13
92 93 9.290988 TCATACAACCAAGCTATCTTTTACAAA 57.709 29.630 0.00 0.00 0.00 2.83
93 94 8.856153 TCATACAACCAAGCTATCTTTTACAA 57.144 30.769 0.00 0.00 0.00 2.41
209 210 9.771915 GCCCATGAACATTTTTATAATTTTGTG 57.228 29.630 0.00 0.00 0.00 3.33
210 211 9.737844 AGCCCATGAACATTTTTATAATTTTGT 57.262 25.926 0.00 0.00 0.00 2.83
220 221 9.737844 ACAATTTATAAGCCCATGAACATTTTT 57.262 25.926 0.00 0.00 0.00 1.94
221 222 9.382275 GACAATTTATAAGCCCATGAACATTTT 57.618 29.630 0.00 0.00 0.00 1.82
222 223 8.538701 TGACAATTTATAAGCCCATGAACATTT 58.461 29.630 0.00 0.00 0.00 2.32
223 224 8.076910 TGACAATTTATAAGCCCATGAACATT 57.923 30.769 0.00 0.00 0.00 2.71
224 225 7.658525 TGACAATTTATAAGCCCATGAACAT 57.341 32.000 0.00 0.00 0.00 2.71
225 226 7.473735 TTGACAATTTATAAGCCCATGAACA 57.526 32.000 0.00 0.00 0.00 3.18
226 227 8.770438 TTTTGACAATTTATAAGCCCATGAAC 57.230 30.769 0.00 0.00 0.00 3.18
264 265 8.789825 TTTGTGAATATTTTCCAAATCCATGG 57.210 30.769 4.97 4.97 42.12 3.66
267 268 9.656040 CAGATTTGTGAATATTTTCCAAATCCA 57.344 29.630 26.40 4.92 45.84 3.41
268 269 9.874205 TCAGATTTGTGAATATTTTCCAAATCC 57.126 29.630 26.40 18.14 45.84 3.01
279 280 9.683069 GTGAACAGTTTTCAGATTTGTGAATAT 57.317 29.630 0.00 0.00 36.34 1.28
280 281 7.855409 CGTGAACAGTTTTCAGATTTGTGAATA 59.145 33.333 0.00 0.00 36.34 1.75
281 282 6.692681 CGTGAACAGTTTTCAGATTTGTGAAT 59.307 34.615 0.00 0.00 36.34 2.57
282 283 6.027131 CGTGAACAGTTTTCAGATTTGTGAA 58.973 36.000 0.00 0.00 34.56 3.18
283 284 5.352846 TCGTGAACAGTTTTCAGATTTGTGA 59.647 36.000 0.00 0.00 0.00 3.58
284 285 5.568482 TCGTGAACAGTTTTCAGATTTGTG 58.432 37.500 0.00 0.00 0.00 3.33
285 286 5.811399 TCGTGAACAGTTTTCAGATTTGT 57.189 34.783 0.00 0.00 0.00 2.83
286 287 7.684062 AATTCGTGAACAGTTTTCAGATTTG 57.316 32.000 0.00 0.00 0.00 2.32
287 288 8.702163 AAAATTCGTGAACAGTTTTCAGATTT 57.298 26.923 0.00 0.00 0.00 2.17
288 289 9.796120 TTAAAATTCGTGAACAGTTTTCAGATT 57.204 25.926 0.00 0.00 0.00 2.40
289 290 9.796120 TTTAAAATTCGTGAACAGTTTTCAGAT 57.204 25.926 0.00 0.00 0.00 2.90
290 291 9.627395 TTTTAAAATTCGTGAACAGTTTTCAGA 57.373 25.926 0.00 0.00 0.00 3.27
297 298 9.360093 TGAATGTTTTTAAAATTCGTGAACAGT 57.640 25.926 0.55 0.64 33.83 3.55
298 299 9.618410 GTGAATGTTTTTAAAATTCGTGAACAG 57.382 29.630 0.55 0.00 33.83 3.16
299 300 9.360093 AGTGAATGTTTTTAAAATTCGTGAACA 57.640 25.926 0.55 1.86 33.83 3.18
377 378 9.740710 TCCCTTTTTCATTTTTCTTTGGTTTTA 57.259 25.926 0.00 0.00 0.00 1.52
378 379 8.642935 TCCCTTTTTCATTTTTCTTTGGTTTT 57.357 26.923 0.00 0.00 0.00 2.43
379 380 8.642935 TTCCCTTTTTCATTTTTCTTTGGTTT 57.357 26.923 0.00 0.00 0.00 3.27
380 381 8.106462 TCTTCCCTTTTTCATTTTTCTTTGGTT 58.894 29.630 0.00 0.00 0.00 3.67
381 382 7.629157 TCTTCCCTTTTTCATTTTTCTTTGGT 58.371 30.769 0.00 0.00 0.00 3.67
382 383 8.681486 ATCTTCCCTTTTTCATTTTTCTTTGG 57.319 30.769 0.00 0.00 0.00 3.28
418 419 4.320023 ACAGTTTTGCCGGTTTTCTTTTT 58.680 34.783 1.90 0.00 0.00 1.94
419 420 3.932822 ACAGTTTTGCCGGTTTTCTTTT 58.067 36.364 1.90 0.00 0.00 2.27
420 421 3.603158 ACAGTTTTGCCGGTTTTCTTT 57.397 38.095 1.90 0.00 0.00 2.52
421 422 3.056465 TCAACAGTTTTGCCGGTTTTCTT 60.056 39.130 1.90 0.00 0.00 2.52
422 423 2.494073 TCAACAGTTTTGCCGGTTTTCT 59.506 40.909 1.90 0.00 0.00 2.52
423 424 2.857748 CTCAACAGTTTTGCCGGTTTTC 59.142 45.455 1.90 0.00 0.00 2.29
424 425 2.494073 TCTCAACAGTTTTGCCGGTTTT 59.506 40.909 1.90 0.00 0.00 2.43
425 426 2.096248 TCTCAACAGTTTTGCCGGTTT 58.904 42.857 1.90 0.00 0.00 3.27
426 427 1.757682 TCTCAACAGTTTTGCCGGTT 58.242 45.000 1.90 0.00 0.00 4.44
427 428 1.757682 TTCTCAACAGTTTTGCCGGT 58.242 45.000 1.90 0.00 0.00 5.28
428 429 2.159310 TGTTTCTCAACAGTTTTGCCGG 60.159 45.455 0.00 0.00 38.03 6.13
429 430 3.143807 TGTTTCTCAACAGTTTTGCCG 57.856 42.857 0.00 0.00 38.03 5.69
430 431 3.730715 CGATGTTTCTCAACAGTTTTGCC 59.269 43.478 0.00 0.00 46.25 4.52
431 432 3.730715 CCGATGTTTCTCAACAGTTTTGC 59.269 43.478 0.00 0.00 46.25 3.68
432 433 5.168526 TCCGATGTTTCTCAACAGTTTTG 57.831 39.130 0.00 0.00 46.25 2.44
433 434 5.828299 TTCCGATGTTTCTCAACAGTTTT 57.172 34.783 0.00 0.00 46.25 2.43
434 435 5.828299 TTTCCGATGTTTCTCAACAGTTT 57.172 34.783 0.00 0.00 46.25 2.66
435 436 5.828299 TTTTCCGATGTTTCTCAACAGTT 57.172 34.783 0.00 0.00 46.25 3.16
436 437 5.828299 TTTTTCCGATGTTTCTCAACAGT 57.172 34.783 0.00 0.00 46.25 3.55
466 467 0.673985 GCAGGTTCTTCGCCCTTTTT 59.326 50.000 0.00 0.00 0.00 1.94
467 468 0.178990 AGCAGGTTCTTCGCCCTTTT 60.179 50.000 0.00 0.00 0.00 2.27
468 469 0.690762 TAGCAGGTTCTTCGCCCTTT 59.309 50.000 0.00 0.00 0.00 3.11
469 470 0.250513 CTAGCAGGTTCTTCGCCCTT 59.749 55.000 0.00 0.00 0.00 3.95
470 471 0.614979 TCTAGCAGGTTCTTCGCCCT 60.615 55.000 0.00 0.00 0.00 5.19
471 472 0.249398 TTCTAGCAGGTTCTTCGCCC 59.751 55.000 0.00 0.00 0.00 6.13
472 473 1.360820 GTTCTAGCAGGTTCTTCGCC 58.639 55.000 0.00 0.00 0.00 5.54
473 474 0.992802 CGTTCTAGCAGGTTCTTCGC 59.007 55.000 0.00 0.00 0.00 4.70
474 475 2.349297 ACGTTCTAGCAGGTTCTTCG 57.651 50.000 0.00 0.00 0.00 3.79
475 476 4.376109 CGAAAACGTTCTAGCAGGTTCTTC 60.376 45.833 0.00 6.79 0.00 2.87
476 477 3.493503 CGAAAACGTTCTAGCAGGTTCTT 59.506 43.478 0.00 0.00 0.00 2.52
477 478 3.057734 CGAAAACGTTCTAGCAGGTTCT 58.942 45.455 0.00 0.00 0.00 3.01
478 479 3.054878 TCGAAAACGTTCTAGCAGGTTC 58.945 45.455 0.00 0.00 0.00 3.62
479 480 3.102052 TCGAAAACGTTCTAGCAGGTT 57.898 42.857 0.00 0.00 0.00 3.50
480 481 2.806608 TCGAAAACGTTCTAGCAGGT 57.193 45.000 0.00 0.00 0.00 4.00
481 482 3.246699 TGTTTCGAAAACGTTCTAGCAGG 59.753 43.478 13.10 0.00 0.00 4.85
482 483 4.025979 ACTGTTTCGAAAACGTTCTAGCAG 60.026 41.667 13.10 13.84 33.97 4.24
483 484 3.866910 ACTGTTTCGAAAACGTTCTAGCA 59.133 39.130 13.10 2.11 0.00 3.49
484 485 4.448363 ACTGTTTCGAAAACGTTCTAGC 57.552 40.909 13.10 0.00 0.00 3.42
485 486 6.245724 ACAAACTGTTTCGAAAACGTTCTAG 58.754 36.000 19.91 16.10 0.00 2.43
486 487 6.091169 AGACAAACTGTTTCGAAAACGTTCTA 59.909 34.615 19.91 0.00 0.00 2.10
487 488 5.038247 ACAAACTGTTTCGAAAACGTTCT 57.962 34.783 19.91 11.46 0.00 3.01
488 489 5.084055 AGACAAACTGTTTCGAAAACGTTC 58.916 37.500 19.91 11.91 0.00 3.95
489 490 5.038247 AGACAAACTGTTTCGAAAACGTT 57.962 34.783 13.10 14.97 0.00 3.99
490 491 4.673534 AGACAAACTGTTTCGAAAACGT 57.326 36.364 13.10 9.68 0.00 3.99
491 492 7.427030 TGAATTAGACAAACTGTTTCGAAAACG 59.573 33.333 13.10 9.02 0.00 3.60
492 493 8.521059 GTGAATTAGACAAACTGTTTCGAAAAC 58.479 33.333 13.10 7.76 0.00 2.43
493 494 8.237949 TGTGAATTAGACAAACTGTTTCGAAAA 58.762 29.630 13.10 2.56 0.00 2.29
494 495 7.753659 TGTGAATTAGACAAACTGTTTCGAAA 58.246 30.769 6.47 6.47 0.00 3.46
495 496 7.310072 TGTGAATTAGACAAACTGTTTCGAA 57.690 32.000 2.13 0.00 0.00 3.71
496 497 6.912203 TGTGAATTAGACAAACTGTTTCGA 57.088 33.333 2.13 0.00 0.00 3.71
497 498 7.576236 AGATGTGAATTAGACAAACTGTTTCG 58.424 34.615 2.13 2.40 0.00 3.46
499 500 9.778741 TCTAGATGTGAATTAGACAAACTGTTT 57.221 29.630 0.00 0.00 0.00 2.83
500 501 9.950496 ATCTAGATGTGAATTAGACAAACTGTT 57.050 29.630 3.89 0.00 0.00 3.16
501 502 9.376075 CATCTAGATGTGAATTAGACAAACTGT 57.624 33.333 22.42 0.00 34.23 3.55
523 524 8.944029 CAGATGTGACATTTCTAGAAAACATCT 58.056 33.333 33.34 33.34 45.89 2.90
524 525 8.939929 TCAGATGTGACATTTCTAGAAAACATC 58.060 33.333 31.34 31.34 41.00 3.06
525 526 8.853077 TCAGATGTGACATTTCTAGAAAACAT 57.147 30.769 23.74 23.74 33.33 2.71
526 527 8.559536 GTTCAGATGTGACATTTCTAGAAAACA 58.440 33.333 21.26 19.49 30.52 2.83
527 528 8.778358 AGTTCAGATGTGACATTTCTAGAAAAC 58.222 33.333 21.26 14.86 30.52 2.43
528 529 8.908786 AGTTCAGATGTGACATTTCTAGAAAA 57.091 30.769 21.26 4.81 30.52 2.29
529 530 7.604164 GGAGTTCAGATGTGACATTTCTAGAAA 59.396 37.037 19.83 19.83 30.10 2.52
530 531 7.099764 GGAGTTCAGATGTGACATTTCTAGAA 58.900 38.462 0.00 0.00 30.10 2.10
531 532 6.351371 GGGAGTTCAGATGTGACATTTCTAGA 60.351 42.308 0.00 0.00 30.10 2.43
532 533 5.814705 GGGAGTTCAGATGTGACATTTCTAG 59.185 44.000 0.00 0.00 30.10 2.43
533 534 5.248248 TGGGAGTTCAGATGTGACATTTCTA 59.752 40.000 0.00 0.00 30.10 2.10
534 535 4.042062 TGGGAGTTCAGATGTGACATTTCT 59.958 41.667 0.00 0.00 30.10 2.52
535 536 4.154918 GTGGGAGTTCAGATGTGACATTTC 59.845 45.833 0.00 0.00 30.10 2.17
536 537 4.074970 GTGGGAGTTCAGATGTGACATTT 58.925 43.478 0.00 0.00 30.10 2.32
537 538 3.072915 TGTGGGAGTTCAGATGTGACATT 59.927 43.478 0.00 0.00 30.10 2.71
538 539 2.639347 TGTGGGAGTTCAGATGTGACAT 59.361 45.455 0.00 0.00 30.10 3.06
539 540 2.046292 TGTGGGAGTTCAGATGTGACA 58.954 47.619 0.00 0.00 30.10 3.58
540 541 2.808543 GTTGTGGGAGTTCAGATGTGAC 59.191 50.000 0.00 0.00 30.10 3.67
541 542 2.705658 AGTTGTGGGAGTTCAGATGTGA 59.294 45.455 0.00 0.00 0.00 3.58
542 543 3.131709 AGTTGTGGGAGTTCAGATGTG 57.868 47.619 0.00 0.00 0.00 3.21
543 544 4.102524 TGTTAGTTGTGGGAGTTCAGATGT 59.897 41.667 0.00 0.00 0.00 3.06
544 545 4.641396 TGTTAGTTGTGGGAGTTCAGATG 58.359 43.478 0.00 0.00 0.00 2.90
545 546 4.974645 TGTTAGTTGTGGGAGTTCAGAT 57.025 40.909 0.00 0.00 0.00 2.90
546 547 4.974645 ATGTTAGTTGTGGGAGTTCAGA 57.025 40.909 0.00 0.00 0.00 3.27
547 548 4.631813 GCTATGTTAGTTGTGGGAGTTCAG 59.368 45.833 0.00 0.00 0.00 3.02
548 549 4.041075 TGCTATGTTAGTTGTGGGAGTTCA 59.959 41.667 0.00 0.00 0.00 3.18
549 550 4.575885 TGCTATGTTAGTTGTGGGAGTTC 58.424 43.478 0.00 0.00 0.00 3.01
550 551 4.634012 TGCTATGTTAGTTGTGGGAGTT 57.366 40.909 0.00 0.00 0.00 3.01
551 552 4.202419 TGTTGCTATGTTAGTTGTGGGAGT 60.202 41.667 0.00 0.00 0.00 3.85
552 553 4.323417 TGTTGCTATGTTAGTTGTGGGAG 58.677 43.478 0.00 0.00 0.00 4.30
553 554 4.359434 TGTTGCTATGTTAGTTGTGGGA 57.641 40.909 0.00 0.00 0.00 4.37
554 555 4.759693 TCTTGTTGCTATGTTAGTTGTGGG 59.240 41.667 0.00 0.00 0.00 4.61
555 556 5.940192 TCTTGTTGCTATGTTAGTTGTGG 57.060 39.130 0.00 0.00 0.00 4.17
556 557 7.192913 TGTTTCTTGTTGCTATGTTAGTTGTG 58.807 34.615 0.00 0.00 0.00 3.33
557 558 7.282224 TCTGTTTCTTGTTGCTATGTTAGTTGT 59.718 33.333 0.00 0.00 0.00 3.32
558 559 7.639039 TCTGTTTCTTGTTGCTATGTTAGTTG 58.361 34.615 0.00 0.00 0.00 3.16
559 560 7.801716 TCTGTTTCTTGTTGCTATGTTAGTT 57.198 32.000 0.00 0.00 0.00 2.24
560 561 7.801716 TTCTGTTTCTTGTTGCTATGTTAGT 57.198 32.000 0.00 0.00 0.00 2.24
561 562 9.515020 TTTTTCTGTTTCTTGTTGCTATGTTAG 57.485 29.630 0.00 0.00 0.00 2.34
612 613 4.326826 ACCTGATGTCCACTATGTTTGTG 58.673 43.478 0.00 0.00 35.39 3.33
613 614 4.640771 ACCTGATGTCCACTATGTTTGT 57.359 40.909 0.00 0.00 0.00 2.83
614 615 8.777413 CATATAACCTGATGTCCACTATGTTTG 58.223 37.037 0.00 0.00 0.00 2.93
615 616 7.445402 GCATATAACCTGATGTCCACTATGTTT 59.555 37.037 0.00 0.00 0.00 2.83
616 617 6.936900 GCATATAACCTGATGTCCACTATGTT 59.063 38.462 0.00 0.00 0.00 2.71
617 618 6.467677 GCATATAACCTGATGTCCACTATGT 58.532 40.000 0.00 0.00 0.00 2.29
618 619 5.578336 CGCATATAACCTGATGTCCACTATG 59.422 44.000 0.00 0.00 0.00 2.23
619 620 5.480422 TCGCATATAACCTGATGTCCACTAT 59.520 40.000 0.00 0.00 0.00 2.12
620 621 4.830600 TCGCATATAACCTGATGTCCACTA 59.169 41.667 0.00 0.00 0.00 2.74
621 622 3.641436 TCGCATATAACCTGATGTCCACT 59.359 43.478 0.00 0.00 0.00 4.00
622 623 3.741344 GTCGCATATAACCTGATGTCCAC 59.259 47.826 0.00 0.00 0.00 4.02
623 624 3.386402 TGTCGCATATAACCTGATGTCCA 59.614 43.478 0.00 0.00 0.00 4.02
624 625 3.990092 TGTCGCATATAACCTGATGTCC 58.010 45.455 0.00 0.00 0.00 4.02
625 626 7.834068 ATTATGTCGCATATAACCTGATGTC 57.166 36.000 1.31 0.00 0.00 3.06
626 627 9.890629 ATAATTATGTCGCATATAACCTGATGT 57.109 29.630 0.00 0.00 0.00 3.06
628 629 9.890629 ACATAATTATGTCGCATATAACCTGAT 57.109 29.630 22.70 0.00 42.96 2.90
657 658 7.450014 AGGGTCTGTCTATAACACATCTAGATG 59.550 40.741 27.63 27.63 44.15 2.90
658 659 7.531317 AGGGTCTGTCTATAACACATCTAGAT 58.469 38.462 0.00 0.00 33.24 1.98
659 660 6.912426 AGGGTCTGTCTATAACACATCTAGA 58.088 40.000 0.00 0.00 33.24 2.43
660 661 7.504238 AGAAGGGTCTGTCTATAACACATCTAG 59.496 40.741 0.00 0.00 33.24 2.43
661 662 7.355101 AGAAGGGTCTGTCTATAACACATCTA 58.645 38.462 0.00 0.00 33.24 1.98
662 663 6.198639 AGAAGGGTCTGTCTATAACACATCT 58.801 40.000 0.00 0.00 33.24 2.90
663 664 6.472686 AGAAGGGTCTGTCTATAACACATC 57.527 41.667 0.00 0.00 33.24 3.06
664 665 5.067936 CGAGAAGGGTCTGTCTATAACACAT 59.932 44.000 0.00 0.00 32.80 3.21
665 666 4.398358 CGAGAAGGGTCTGTCTATAACACA 59.602 45.833 0.00 0.00 32.80 3.72
666 667 4.639310 TCGAGAAGGGTCTGTCTATAACAC 59.361 45.833 0.00 0.00 32.80 3.32
667 668 4.851843 TCGAGAAGGGTCTGTCTATAACA 58.148 43.478 0.00 0.00 32.80 2.41
668 669 5.831702 TTCGAGAAGGGTCTGTCTATAAC 57.168 43.478 0.00 0.00 32.80 1.89
669 670 6.350780 GGTTTTCGAGAAGGGTCTGTCTATAA 60.351 42.308 0.00 0.00 32.80 0.98
670 671 5.126707 GGTTTTCGAGAAGGGTCTGTCTATA 59.873 44.000 0.00 0.00 32.80 1.31
671 672 4.081586 GGTTTTCGAGAAGGGTCTGTCTAT 60.082 45.833 0.00 0.00 32.80 1.98
672 673 3.257624 GGTTTTCGAGAAGGGTCTGTCTA 59.742 47.826 0.00 0.00 32.80 2.59
673 674 2.037381 GGTTTTCGAGAAGGGTCTGTCT 59.963 50.000 0.00 0.00 32.80 3.41
674 675 2.037381 AGGTTTTCGAGAAGGGTCTGTC 59.963 50.000 0.00 0.00 32.80 3.51
675 676 2.047830 AGGTTTTCGAGAAGGGTCTGT 58.952 47.619 0.00 0.00 32.80 3.41
676 677 2.417719 CAGGTTTTCGAGAAGGGTCTG 58.582 52.381 0.00 0.00 32.80 3.51
677 678 1.270893 GCAGGTTTTCGAGAAGGGTCT 60.271 52.381 0.00 0.00 36.55 3.85
678 679 1.157585 GCAGGTTTTCGAGAAGGGTC 58.842 55.000 0.00 0.00 0.00 4.46
679 680 0.765510 AGCAGGTTTTCGAGAAGGGT 59.234 50.000 0.00 0.00 0.00 4.34
680 681 1.002544 AGAGCAGGTTTTCGAGAAGGG 59.997 52.381 0.00 0.00 0.00 3.95
681 682 2.072298 CAGAGCAGGTTTTCGAGAAGG 58.928 52.381 0.00 0.00 0.00 3.46
682 683 2.072298 CCAGAGCAGGTTTTCGAGAAG 58.928 52.381 0.00 0.00 0.00 2.85
683 684 1.270839 CCCAGAGCAGGTTTTCGAGAA 60.271 52.381 0.00 0.00 0.00 2.87
684 685 0.321671 CCCAGAGCAGGTTTTCGAGA 59.678 55.000 0.00 0.00 0.00 4.04
685 686 0.674895 CCCCAGAGCAGGTTTTCGAG 60.675 60.000 0.00 0.00 0.00 4.04
695 696 1.923395 CCCTGTAACCCCCAGAGCA 60.923 63.158 0.00 0.00 31.38 4.26
703 704 2.675371 GCCTGACCCCTGTAACCC 59.325 66.667 0.00 0.00 0.00 4.11
713 714 1.597461 GACAGTACTGGGCCTGACC 59.403 63.158 26.12 6.69 37.93 4.02
715 716 0.904865 CTGGACAGTACTGGGCCTGA 60.905 60.000 26.12 11.25 33.36 3.86
731 732 1.199097 GGTACAAAACGCACATCCTGG 59.801 52.381 0.00 0.00 0.00 4.45
1294 1311 0.102844 GCTGAGCTGAGCTGGTAGAG 59.897 60.000 18.71 0.52 39.88 2.43
1295 1312 2.197250 GCTGAGCTGAGCTGGTAGA 58.803 57.895 18.71 0.00 39.88 2.59
1296 1313 4.831698 GCTGAGCTGAGCTGGTAG 57.168 61.111 18.71 8.66 39.88 3.18
1302 1319 0.383231 GAGAGAGAGCTGAGCTGAGC 59.617 60.000 18.32 18.32 39.88 4.26
1303 1320 1.753930 TGAGAGAGAGCTGAGCTGAG 58.246 55.000 13.71 0.00 39.88 3.35
1304 1321 2.025898 CATGAGAGAGAGCTGAGCTGA 58.974 52.381 13.71 0.00 39.88 4.26
1328 1345 0.605319 GCAACCGTGATGGACCAAGA 60.605 55.000 0.00 0.00 42.00 3.02
1335 1352 0.734889 GGAATGAGCAACCGTGATGG 59.265 55.000 0.00 0.00 46.41 3.51
1336 1353 1.742761 AGGAATGAGCAACCGTGATG 58.257 50.000 0.00 0.00 0.00 3.07
1362 1379 2.159707 ACGCAACACAATAGACAATCGC 60.160 45.455 0.00 0.00 0.00 4.58
1465 1485 6.801575 TGGAATTAACAACCAACTGAAAGAC 58.198 36.000 0.00 0.00 37.43 3.01
1497 1517 3.552132 TCAGCAACTCAACCTACACAA 57.448 42.857 0.00 0.00 0.00 3.33
1545 1565 5.011125 TGGTCTGTCCTAGAGAACTTGAAAG 59.989 44.000 0.00 0.00 35.70 2.62
1547 1567 4.480115 TGGTCTGTCCTAGAGAACTTGAA 58.520 43.478 0.00 0.00 35.70 2.69
1554 1574 3.845860 ACAGTTTGGTCTGTCCTAGAGA 58.154 45.455 0.00 0.00 44.07 3.10
1743 1769 3.118702 TGGCCAATATCACCAAAATGCAG 60.119 43.478 0.61 0.00 0.00 4.41
1992 2018 4.092529 CAGTATTAGGCAATCGCATGCTAG 59.907 45.833 17.13 0.45 45.68 3.42
2069 2116 6.145338 TGTTAAAACGCCACAAATTTCCTA 57.855 33.333 0.00 0.00 0.00 2.94
2216 2264 9.243105 AGTTAACATGGACAATAGTTTGCTAAT 57.757 29.630 8.61 0.00 36.22 1.73
2217 2265 8.630054 AGTTAACATGGACAATAGTTTGCTAA 57.370 30.769 8.61 0.00 36.22 3.09
2234 2282 9.846248 GCTGTGAGATCAAAATAAAGTTAACAT 57.154 29.630 8.61 0.00 0.00 2.71
2236 2284 7.755373 GGGCTGTGAGATCAAAATAAAGTTAAC 59.245 37.037 0.00 0.00 0.00 2.01
2241 2289 4.201950 CGGGGCTGTGAGATCAAAATAAAG 60.202 45.833 0.00 0.00 0.00 1.85
2350 2398 4.887071 TGGTACCTGATGATTATTTGTGCC 59.113 41.667 14.36 0.00 0.00 5.01
2424 2472 9.809096 TCTAACACAAACATTGAGCAAATTTTA 57.191 25.926 0.00 0.00 0.00 1.52
2489 2537 1.526575 AAACCCCATCAACAGCAGCG 61.527 55.000 0.00 0.00 0.00 5.18
2520 2569 4.381718 GGGGACTACACAGATGTAACAGAC 60.382 50.000 0.00 0.00 40.84 3.51
2521 2570 3.767673 GGGGACTACACAGATGTAACAGA 59.232 47.826 0.00 0.00 40.84 3.41
2564 2613 6.928492 ACGTCAATTAAGCAAATGAAATGGTT 59.072 30.769 0.00 0.00 41.09 3.67
2586 2635 5.995897 AGCATAAAAGGAAGTAGAAACACGT 59.004 36.000 0.00 0.00 0.00 4.49
2600 2649 3.878778 AGTCACTGCCTAGCATAAAAGG 58.121 45.455 0.00 0.00 38.13 3.11
2620 2669 2.604914 CGTAGCAAACATCCACAGCTAG 59.395 50.000 0.00 0.00 38.35 3.42
2684 2973 6.204688 CCATTAGTTGTTAGTGAAGTTGAGCA 59.795 38.462 0.00 0.00 0.00 4.26
2694 2983 9.528018 AAATGAAAACACCATTAGTTGTTAGTG 57.472 29.630 0.00 0.00 33.51 2.74
2699 2988 7.821846 ACACAAAATGAAAACACCATTAGTTGT 59.178 29.630 0.00 0.00 36.33 3.32
2702 2991 8.663911 CAAACACAAAATGAAAACACCATTAGT 58.336 29.630 0.00 0.00 33.51 2.24
2728 3017 2.150397 ATCGTATAAGCGAACCTGGC 57.850 50.000 0.00 0.00 44.38 4.85
2918 3207 8.698973 TGTTCCAAAAATACTCAGTTCCATTA 57.301 30.769 0.00 0.00 0.00 1.90
3001 3301 8.547069 CAGGTCTATCTCGAAATTCAAATCTTC 58.453 37.037 0.00 0.00 0.00 2.87
3005 3305 7.106239 ACACAGGTCTATCTCGAAATTCAAAT 58.894 34.615 0.00 0.00 0.00 2.32
3019 3319 8.974060 TGAAGTTTAAGAAAACACAGGTCTAT 57.026 30.769 4.04 0.00 46.18 1.98
3022 3322 6.750501 GGTTGAAGTTTAAGAAAACACAGGTC 59.249 38.462 4.04 0.00 46.18 3.85
3026 3326 6.591750 TGGGTTGAAGTTTAAGAAAACACA 57.408 33.333 4.04 0.00 46.18 3.72
3048 3351 4.527509 AGGAGTAGACTTGTGACACATG 57.472 45.455 17.43 17.43 0.00 3.21
3070 3373 8.991783 ACATGAAGTGGATCTGATGATTAAAT 57.008 30.769 0.00 0.00 32.19 1.40
3166 3470 7.324856 GCATGTCACTAACTATCTGTCGATTAG 59.675 40.741 0.00 0.00 0.00 1.73
3167 3471 7.139392 GCATGTCACTAACTATCTGTCGATTA 58.861 38.462 0.00 0.00 0.00 1.75
3168 3472 5.980116 GCATGTCACTAACTATCTGTCGATT 59.020 40.000 0.00 0.00 0.00 3.34
3266 3570 3.865745 ACGCAATCTCCGATCAGTTAAAG 59.134 43.478 0.00 0.00 0.00 1.85
3273 3577 0.744281 TGCTACGCAATCTCCGATCA 59.256 50.000 0.00 0.00 34.76 2.92
3312 3616 6.987992 GCCATAATCATTTGTCCATGTCATTT 59.012 34.615 0.00 0.00 0.00 2.32
3373 3677 7.114811 CACCAATCACAACACTGTAAAATAAGC 59.885 37.037 0.00 0.00 33.22 3.09
3567 3872 3.196469 TGCACAACAAAATTGAGGGAACA 59.804 39.130 0.00 0.00 0.00 3.18
3899 4210 7.501844 AGAGTAGCCCAAGATTAAGTCATAAC 58.498 38.462 0.00 0.00 0.00 1.89
4038 4349 6.164408 TGTATAAATGAACTTGCACACTCG 57.836 37.500 0.00 0.00 0.00 4.18
4088 4399 3.532542 AGGTTAGCCAAGATAGAAACGC 58.467 45.455 0.00 0.00 37.19 4.84
4238 4549 7.448161 AGAAATGTGAATCAATAACCACTGTCA 59.552 33.333 0.00 0.00 0.00 3.58
4277 4588 4.614475 AGAGAGAGAGAGAGAGAGAGACA 58.386 47.826 0.00 0.00 0.00 3.41
4380 5430 2.014857 CAATGGCCACTCTCACATCTG 58.985 52.381 8.16 0.00 0.00 2.90
4422 5473 3.257873 CCCATTACAACAAGCACCATTCA 59.742 43.478 0.00 0.00 0.00 2.57
4441 5492 2.238521 CTAAAGGAAGCACTTTGCCCA 58.761 47.619 10.22 0.00 46.52 5.36
4520 5581 7.021790 CCGAGTAAAAAGAAGCAATACTTTCC 58.978 38.462 0.00 0.00 39.29 3.13
4523 5584 7.227910 TGTTCCGAGTAAAAAGAAGCAATACTT 59.772 33.333 0.00 0.00 42.98 2.24
4525 5586 6.795593 GTGTTCCGAGTAAAAAGAAGCAATAC 59.204 38.462 0.00 0.00 0.00 1.89
4587 5648 5.970023 GCATTCATCAAGATGCAGTTAAGAC 59.030 40.000 5.19 0.00 39.61 3.01
4607 5668 2.683211 ACCTCAAACCTCAAGGCATT 57.317 45.000 0.00 0.00 39.32 3.56
4746 5807 5.072329 AGTTCCTTCTTCATCCTCTTCAACA 59.928 40.000 0.00 0.00 0.00 3.33
4761 5822 3.498661 GGTCCACCATTTGAGTTCCTTCT 60.499 47.826 0.00 0.00 35.64 2.85
5119 6198 2.584835 ATTCACTAAGGCAAGCACCA 57.415 45.000 0.00 0.00 0.00 4.17
5201 6280 7.451566 ACAGCAGGTAATATTTCAAGGAAAAGT 59.548 33.333 0.00 0.00 35.11 2.66
5202 6281 7.830739 ACAGCAGGTAATATTTCAAGGAAAAG 58.169 34.615 0.00 0.00 35.11 2.27
5510 6592 2.355837 TCTGCAACACGACTCCGC 60.356 61.111 0.00 0.00 39.95 5.54
5538 6620 9.859427 TTGTCTCATGAAATTATCAAAATGGTC 57.141 29.630 0.00 0.00 42.54 4.02
5546 6628 7.665145 TGGTCAACTTGTCTCATGAAATTATCA 59.335 33.333 0.00 0.00 43.67 2.15
5609 6963 5.620738 AGGCTCATATGAGAAAAGCACTA 57.379 39.130 32.38 0.00 44.74 2.74
5664 7019 4.539293 CCTTCCCTGATTCCATATGGAGAT 59.461 45.833 23.35 18.68 46.36 2.75
5918 7273 3.682858 GCCAGAAAACAATAGCGTCACTA 59.317 43.478 0.00 0.00 34.64 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.