Multiple sequence alignment - TraesCS2D01G232300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G232300 chr2D 100.000 6804 0 0 1 6804 205004310 205011113 0.000000e+00 12565.0
1 TraesCS2D01G232300 chr2B 94.392 3156 90 43 2898 6026 259032065 259035160 0.000000e+00 4767.0
2 TraesCS2D01G232300 chr2B 96.272 1395 39 7 1746 3134 259030671 259032058 0.000000e+00 2276.0
3 TraesCS2D01G232300 chr2B 94.472 995 18 11 782 1771 259029704 259030666 0.000000e+00 1498.0
4 TraesCS2D01G232300 chr2B 95.259 464 22 0 6341 6804 259035384 259035847 0.000000e+00 736.0
5 TraesCS2D01G232300 chr2B 96.825 189 4 2 599 785 458962478 458962290 1.420000e-81 315.0
6 TraesCS2D01G232300 chr2B 96.296 162 6 0 301 462 259029446 259029607 4.050000e-67 267.0
7 TraesCS2D01G232300 chr2B 94.928 138 7 0 6093 6230 259035183 259035320 4.130000e-52 217.0
8 TraesCS2D01G232300 chr2B 95.876 97 4 0 474 570 259029592 259029688 2.540000e-34 158.0
9 TraesCS2D01G232300 chr2B 94.872 78 4 0 1 78 259028575 259028652 9.270000e-24 122.0
10 TraesCS2D01G232300 chr2B 93.023 43 3 0 101 143 259028653 259028695 5.700000e-06 63.9
11 TraesCS2D01G232300 chr2A 94.660 2322 72 14 785 3084 278420129 278417838 0.000000e+00 3554.0
12 TraesCS2D01G232300 chr2A 96.696 2028 58 5 2898 4922 278417754 278415733 0.000000e+00 3365.0
13 TraesCS2D01G232300 chr2A 93.923 1086 27 9 4942 6019 278415676 278414622 0.000000e+00 1604.0
14 TraesCS2D01G232300 chr2A 93.548 496 27 2 6309 6804 278414430 278413940 0.000000e+00 734.0
15 TraesCS2D01G232300 chr2A 92.478 226 7 3 1 221 278445373 278445153 1.420000e-81 315.0
16 TraesCS2D01G232300 chr2A 97.015 134 4 0 236 369 278444560 278444427 6.870000e-55 226.0
17 TraesCS2D01G232300 chr2A 91.971 137 3 2 474 602 278420263 278420127 1.170000e-42 185.0
18 TraesCS2D01G232300 chr2A 96.364 55 2 0 408 462 278420302 278420248 2.610000e-14 91.6
19 TraesCS2D01G232300 chr4A 94.922 965 45 2 3489 4450 713262350 713263313 0.000000e+00 1507.0
20 TraesCS2D01G232300 chr4A 94.742 932 45 2 3489 4417 713252283 713253213 0.000000e+00 1447.0
21 TraesCS2D01G232300 chr4A 94.108 611 27 7 2931 3536 713251685 713252291 0.000000e+00 920.0
22 TraesCS2D01G232300 chr4A 94.108 611 27 7 2931 3536 713261752 713262358 0.000000e+00 920.0
23 TraesCS2D01G232300 chr4A 94.215 121 5 1 2705 2825 713251297 713251415 4.190000e-42 183.0
24 TraesCS2D01G232300 chr4A 94.215 121 5 1 2705 2825 713261364 713261482 4.190000e-42 183.0
25 TraesCS2D01G232300 chr5D 95.253 632 23 5 3489 4115 377304510 377305139 0.000000e+00 994.0
26 TraesCS2D01G232300 chr5D 94.272 611 27 7 2931 3536 377303871 377304478 0.000000e+00 928.0
27 TraesCS2D01G232300 chr5D 93.315 359 19 3 2705 3062 377303516 377303870 6.050000e-145 525.0
28 TraesCS2D01G232300 chr5D 97.368 190 3 2 598 785 159884720 159884531 8.510000e-84 322.0
29 TraesCS2D01G232300 chr5D 96.825 189 5 1 600 787 540003237 540003049 1.420000e-81 315.0
30 TraesCS2D01G232300 chr5D 90.805 87 4 3 6017 6099 166628151 166628065 5.580000e-21 113.0
31 TraesCS2D01G232300 chr4D 94.771 612 23 7 2931 3536 469151308 469151916 0.000000e+00 944.0
32 TraesCS2D01G232300 chr4D 94.599 611 25 6 2931 3536 409475576 409474969 0.000000e+00 939.0
33 TraesCS2D01G232300 chr4D 95.047 424 21 0 3489 3912 409474937 409474514 0.000000e+00 667.0
34 TraesCS2D01G232300 chr4D 93.632 424 19 3 3489 3912 469151908 469152323 1.610000e-175 627.0
35 TraesCS2D01G232300 chr4D 95.549 337 15 0 4114 4450 469152321 469152657 2.160000e-149 540.0
36 TraesCS2D01G232300 chr4D 94.955 337 17 0 4114 4450 409474516 409474180 4.670000e-146 529.0
37 TraesCS2D01G232300 chr4D 93.036 359 19 3 2705 3062 469150954 469151307 2.810000e-143 520.0
38 TraesCS2D01G232300 chr4D 92.758 359 21 3 2705 3062 409475931 409475577 1.310000e-141 514.0
39 TraesCS2D01G232300 chr4D 97.354 189 4 1 602 789 3288334 3288522 3.060000e-83 320.0
40 TraesCS2D01G232300 chr4D 96.296 189 6 1 600 787 315271798 315271986 6.630000e-80 309.0
41 TraesCS2D01G232300 chr4D 91.566 83 4 2 6020 6099 433367684 433367602 2.010000e-20 111.0
42 TraesCS2D01G232300 chr3D 94.435 611 26 6 2931 3536 323770309 323770916 0.000000e+00 933.0
43 TraesCS2D01G232300 chr3D 93.797 532 26 5 2931 3458 323778344 323778872 0.000000e+00 793.0
44 TraesCS2D01G232300 chr3D 94.575 424 23 0 3489 3912 323770908 323771331 0.000000e+00 656.0
45 TraesCS2D01G232300 chr3D 93.593 359 18 3 2705 3062 323769954 323770308 1.300000e-146 531.0
46 TraesCS2D01G232300 chr3D 93.593 359 18 3 2705 3062 323777989 323778343 1.300000e-146 531.0
47 TraesCS2D01G232300 chr3D 94.955 337 17 0 4114 4450 323771329 323771665 4.670000e-146 529.0
48 TraesCS2D01G232300 chr3D 97.895 190 2 2 599 787 42401732 42401920 1.830000e-85 327.0
49 TraesCS2D01G232300 chr3D 96.154 52 1 1 7 57 22265770 22265719 4.370000e-12 84.2
50 TraesCS2D01G232300 chrUn 96.825 189 5 1 600 787 51492864 51492676 1.420000e-81 315.0
51 TraesCS2D01G232300 chrUn 96.825 189 5 1 600 787 348959158 348959346 1.420000e-81 315.0
52 TraesCS2D01G232300 chrUn 95.349 43 0 2 5 45 103519472 103519514 4.400000e-07 67.6
53 TraesCS2D01G232300 chr7D 96.335 191 6 1 600 789 433896565 433896375 5.120000e-81 313.0
54 TraesCS2D01G232300 chr7A 82.967 182 28 3 6108 6288 490830585 490830406 1.960000e-35 161.0
55 TraesCS2D01G232300 chr3B 92.941 85 3 2 6020 6101 401410556 401410472 3.330000e-23 121.0
56 TraesCS2D01G232300 chr6D 92.857 84 3 1 6019 6099 433639208 433639291 1.200000e-22 119.0
57 TraesCS2D01G232300 chr1B 93.750 80 2 2 6020 6096 70337819 70337898 4.310000e-22 117.0
58 TraesCS2D01G232300 chr1B 93.506 77 3 1 6022 6096 174107772 174107848 5.580000e-21 113.0
59 TraesCS2D01G232300 chr7B 91.566 83 4 2 6020 6099 36733900 36733818 2.010000e-20 111.0
60 TraesCS2D01G232300 chr4B 90.588 85 5 1 6020 6101 329074192 329074108 7.210000e-20 110.0
61 TraesCS2D01G232300 chr5B 89.655 87 6 2 6016 6099 583164007 583163921 2.590000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G232300 chr2D 205004310 205011113 6803 False 12565.000000 12565 100.000000 1 6804 1 chr2D.!!$F1 6803
1 TraesCS2D01G232300 chr2B 259028575 259035847 7272 False 1122.766667 4767 95.043333 1 6804 9 chr2B.!!$F1 6803
2 TraesCS2D01G232300 chr2A 278413940 278420302 6362 True 1588.933333 3554 94.527000 408 6804 6 chr2A.!!$R1 6396
3 TraesCS2D01G232300 chr2A 278444427 278445373 946 True 270.500000 315 94.746500 1 369 2 chr2A.!!$R2 368
4 TraesCS2D01G232300 chr4A 713261364 713263313 1949 False 870.000000 1507 94.415000 2705 4450 3 chr4A.!!$F2 1745
5 TraesCS2D01G232300 chr4A 713251297 713253213 1916 False 850.000000 1447 94.355000 2705 4417 3 chr4A.!!$F1 1712
6 TraesCS2D01G232300 chr5D 377303516 377305139 1623 False 815.666667 994 94.280000 2705 4115 3 chr5D.!!$F1 1410
7 TraesCS2D01G232300 chr4D 409474180 409475931 1751 True 662.250000 939 94.339750 2705 4450 4 chr4D.!!$R2 1745
8 TraesCS2D01G232300 chr4D 469150954 469152657 1703 False 657.750000 944 94.247000 2705 4450 4 chr4D.!!$F3 1745
9 TraesCS2D01G232300 chr3D 323769954 323771665 1711 False 662.250000 933 94.389500 2705 4450 4 chr3D.!!$F2 1745
10 TraesCS2D01G232300 chr3D 323777989 323778872 883 False 662.000000 793 93.695000 2705 3458 2 chr3D.!!$F3 753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 145 0.042431 AGAGGGAGGTGACATGAGCT 59.958 55.000 0.00 0.00 0.00 4.09 F
785 1671 0.105709 CTGGAACCAAACACCCCCTT 60.106 55.000 0.00 0.00 0.00 3.95 F
1109 2008 1.145156 CCGGAGCGAGAGAGAGAGA 59.855 63.158 0.00 0.00 0.00 3.10 F
2265 3213 1.009829 CAGTCCTCGCTGGCATTAAC 58.990 55.000 0.00 0.00 35.26 2.01 F
2681 3636 0.248843 GCTCACTCTCTGAAGGTGGG 59.751 60.000 8.93 7.28 34.86 4.61 F
2904 3892 0.813210 GCAGCCACTACAGCAGATCC 60.813 60.000 0.00 0.00 0.00 3.36 F
3711 5093 1.398762 CGTCTCGACATGCTGACACG 61.399 60.000 0.00 0.00 0.00 4.49 F
4945 6339 1.909302 TCTGGGAGGAAGGCTAACTTG 59.091 52.381 0.00 0.00 40.21 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 3043 0.813210 GAGGCGGCCTCTGAATCTTG 60.813 60.000 35.90 0.00 46.41 3.02 R
2149 3094 0.176910 TCACTGTTGACTTGGCACGA 59.823 50.000 0.00 0.00 0.00 4.35 R
2664 3619 0.487325 TCCCCACCTTCAGAGAGTGA 59.513 55.000 3.93 0.00 33.21 3.41 R
3245 4507 2.295349 GCATCCTCCTGCATGGTTAATG 59.705 50.000 0.00 0.00 41.87 1.90 R
4573 5967 1.384191 AGCCTTGAATTTCCGGGCT 59.616 52.632 19.81 19.81 46.95 5.19 R
4812 6206 0.032217 CCTCTGAGCCTCTTCCCTCT 60.032 60.000 0.00 0.00 0.00 3.69 R
5241 6678 0.593008 GGATGCGTCGCGTGTATGTA 60.593 55.000 18.30 0.00 0.00 2.29 R
6191 7667 0.183971 TCACGTTCAAACCACCCCAT 59.816 50.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 102 2.700773 GCGGCCTTGTCCACCATTC 61.701 63.158 0.00 0.00 0.00 2.67
140 145 0.042431 AGAGGGAGGTGACATGAGCT 59.958 55.000 0.00 0.00 0.00 4.09
141 146 0.177604 GAGGGAGGTGACATGAGCTG 59.822 60.000 0.00 0.00 0.00 4.24
142 147 0.252421 AGGGAGGTGACATGAGCTGA 60.252 55.000 0.00 0.00 0.00 4.26
143 148 0.177604 GGGAGGTGACATGAGCTGAG 59.822 60.000 0.00 0.00 0.00 3.35
144 149 0.461693 GGAGGTGACATGAGCTGAGC 60.462 60.000 0.00 0.00 0.00 4.26
162 167 1.330655 GCTGACGGAGGGGAGATTCA 61.331 60.000 0.00 0.00 0.00 2.57
201 206 2.280389 CCCGATCCACTGGCATCG 60.280 66.667 16.76 16.76 41.34 3.84
210 215 2.821366 CTGGCATCGTGGGAGTGC 60.821 66.667 0.00 0.00 38.12 4.40
229 709 2.288457 TGCCTTAGAGCATATCAGCGTC 60.288 50.000 0.00 0.00 38.00 5.19
232 712 1.239347 TAGAGCATATCAGCGTCGCT 58.761 50.000 15.47 15.47 40.77 4.93
273 1029 0.779997 AACAAGGCCTGAAGGATGGT 59.220 50.000 5.69 0.00 37.39 3.55
320 1187 6.040166 CAGGGCAAATTTGTAAGCATAGAGAT 59.960 38.462 19.03 0.00 0.00 2.75
399 1266 9.487790 TTGTTGAATTTCCAAATAAGATCCAAC 57.512 29.630 0.00 0.00 0.00 3.77
417 1284 0.756903 ACACAGTAGGGCGAGTTGTT 59.243 50.000 0.00 0.00 0.00 2.83
460 1327 9.515226 TCCTGTTATTCTAAGCAAGTTTTACAT 57.485 29.630 0.00 0.00 0.00 2.29
464 1331 9.569167 GTTATTCTAAGCAAGTTTTACATTCCC 57.431 33.333 0.00 0.00 0.00 3.97
465 1332 6.584185 TTCTAAGCAAGTTTTACATTCCCC 57.416 37.500 0.00 0.00 0.00 4.81
466 1333 5.887754 TCTAAGCAAGTTTTACATTCCCCT 58.112 37.500 0.00 0.00 0.00 4.79
467 1334 7.023171 TCTAAGCAAGTTTTACATTCCCCTA 57.977 36.000 0.00 0.00 0.00 3.53
468 1335 7.463431 TCTAAGCAAGTTTTACATTCCCCTAA 58.537 34.615 0.00 0.00 0.00 2.69
469 1336 6.987403 AAGCAAGTTTTACATTCCCCTAAA 57.013 33.333 0.00 0.00 0.00 1.85
470 1337 6.987403 AGCAAGTTTTACATTCCCCTAAAA 57.013 33.333 0.00 0.00 0.00 1.52
471 1338 7.368198 AGCAAGTTTTACATTCCCCTAAAAA 57.632 32.000 0.00 0.00 0.00 1.94
568 1442 4.207891 AGCAGTACCACTAATCTGTTGG 57.792 45.455 0.00 0.00 0.00 3.77
569 1443 3.583086 AGCAGTACCACTAATCTGTTGGT 59.417 43.478 0.00 0.00 36.72 3.67
570 1444 3.933332 GCAGTACCACTAATCTGTTGGTC 59.067 47.826 0.00 0.00 34.38 4.02
571 1445 4.504858 CAGTACCACTAATCTGTTGGTCC 58.495 47.826 0.00 0.00 34.38 4.46
572 1446 4.223032 CAGTACCACTAATCTGTTGGTCCT 59.777 45.833 0.00 0.00 34.38 3.85
573 1447 3.983044 ACCACTAATCTGTTGGTCCTC 57.017 47.619 0.00 0.00 0.00 3.71
574 1448 2.233922 ACCACTAATCTGTTGGTCCTCG 59.766 50.000 0.00 0.00 0.00 4.63
575 1449 2.496070 CCACTAATCTGTTGGTCCTCGA 59.504 50.000 0.00 0.00 0.00 4.04
576 1450 3.056107 CCACTAATCTGTTGGTCCTCGAA 60.056 47.826 0.00 0.00 0.00 3.71
577 1451 4.562757 CCACTAATCTGTTGGTCCTCGAAA 60.563 45.833 0.00 0.00 0.00 3.46
578 1452 4.994852 CACTAATCTGTTGGTCCTCGAAAA 59.005 41.667 0.00 0.00 0.00 2.29
603 1489 2.108362 GTCCGGCGGACCATTAGG 59.892 66.667 41.63 7.77 46.19 2.69
616 1502 3.934457 CCATTAGGTGGTGTTTGGTTC 57.066 47.619 0.00 0.00 43.44 3.62
617 1503 3.496331 CCATTAGGTGGTGTTTGGTTCT 58.504 45.455 0.00 0.00 43.44 3.01
618 1504 3.506067 CCATTAGGTGGTGTTTGGTTCTC 59.494 47.826 0.00 0.00 43.44 2.87
619 1505 4.398319 CATTAGGTGGTGTTTGGTTCTCT 58.602 43.478 0.00 0.00 0.00 3.10
620 1506 5.514136 CCATTAGGTGGTGTTTGGTTCTCTA 60.514 44.000 0.00 0.00 43.44 2.43
621 1507 3.771577 AGGTGGTGTTTGGTTCTCTAG 57.228 47.619 0.00 0.00 0.00 2.43
622 1508 3.046374 AGGTGGTGTTTGGTTCTCTAGT 58.954 45.455 0.00 0.00 0.00 2.57
623 1509 3.071167 AGGTGGTGTTTGGTTCTCTAGTC 59.929 47.826 0.00 0.00 0.00 2.59
624 1510 3.400255 GTGGTGTTTGGTTCTCTAGTCC 58.600 50.000 0.00 0.00 0.00 3.85
625 1511 3.071167 GTGGTGTTTGGTTCTCTAGTCCT 59.929 47.826 0.00 0.00 0.00 3.85
626 1512 4.282703 GTGGTGTTTGGTTCTCTAGTCCTA 59.717 45.833 0.00 0.00 0.00 2.94
627 1513 4.527038 TGGTGTTTGGTTCTCTAGTCCTAG 59.473 45.833 0.00 0.00 34.56 3.02
628 1514 4.081586 GGTGTTTGGTTCTCTAGTCCTAGG 60.082 50.000 0.82 0.82 34.06 3.02
629 1515 4.771054 GTGTTTGGTTCTCTAGTCCTAGGA 59.229 45.833 7.62 7.62 34.06 2.94
630 1516 4.771054 TGTTTGGTTCTCTAGTCCTAGGAC 59.229 45.833 31.29 31.29 44.86 3.85
663 1549 6.954487 TCCCTAGGACTTTTTGAAAAAGAC 57.046 37.500 30.55 24.86 0.00 3.01
664 1550 6.669631 TCCCTAGGACTTTTTGAAAAAGACT 58.330 36.000 30.55 26.69 0.00 3.24
665 1551 6.771267 TCCCTAGGACTTTTTGAAAAAGACTC 59.229 38.462 30.55 20.15 0.00 3.36
666 1552 6.773200 CCCTAGGACTTTTTGAAAAAGACTCT 59.227 38.462 30.55 23.56 0.00 3.24
667 1553 7.285629 CCCTAGGACTTTTTGAAAAAGACTCTT 59.714 37.037 30.55 19.17 0.00 2.85
668 1554 9.338622 CCTAGGACTTTTTGAAAAAGACTCTTA 57.661 33.333 30.55 19.25 0.00 2.10
671 1557 8.687242 AGGACTTTTTGAAAAAGACTCTTAAGG 58.313 33.333 30.55 7.27 0.00 2.69
672 1558 8.683615 GGACTTTTTGAAAAAGACTCTTAAGGA 58.316 33.333 30.55 0.00 0.00 3.36
673 1559 9.723447 GACTTTTTGAAAAAGACTCTTAAGGAG 57.277 33.333 30.55 6.52 46.87 3.69
674 1560 8.687242 ACTTTTTGAAAAAGACTCTTAAGGAGG 58.313 33.333 30.55 6.26 45.83 4.30
675 1561 8.589701 TTTTTGAAAAAGACTCTTAAGGAGGT 57.410 30.769 1.85 0.00 45.83 3.85
676 1562 7.568199 TTTGAAAAAGACTCTTAAGGAGGTG 57.432 36.000 1.85 0.00 45.83 4.00
677 1563 5.063880 TGAAAAAGACTCTTAAGGAGGTGC 58.936 41.667 1.85 0.00 45.83 5.01
678 1564 4.984146 AAAAGACTCTTAAGGAGGTGCT 57.016 40.909 1.85 0.00 45.83 4.40
679 1565 4.984146 AAAGACTCTTAAGGAGGTGCTT 57.016 40.909 1.85 2.98 45.83 3.91
680 1566 4.545208 AAGACTCTTAAGGAGGTGCTTC 57.455 45.455 1.85 0.00 45.83 3.86
681 1567 3.785364 AGACTCTTAAGGAGGTGCTTCT 58.215 45.455 1.85 0.00 45.83 2.85
682 1568 4.936802 AGACTCTTAAGGAGGTGCTTCTA 58.063 43.478 1.85 0.00 45.83 2.10
683 1569 5.334421 AGACTCTTAAGGAGGTGCTTCTAA 58.666 41.667 1.85 0.00 45.83 2.10
684 1570 5.420739 AGACTCTTAAGGAGGTGCTTCTAAG 59.579 44.000 1.85 0.00 45.83 2.18
685 1571 4.468153 ACTCTTAAGGAGGTGCTTCTAAGG 59.532 45.833 1.85 0.00 45.83 2.69
686 1572 4.684724 TCTTAAGGAGGTGCTTCTAAGGA 58.315 43.478 1.85 0.00 0.00 3.36
687 1573 4.466726 TCTTAAGGAGGTGCTTCTAAGGAC 59.533 45.833 1.85 5.86 45.39 3.85
688 1574 2.632763 AGGAGGTGCTTCTAAGGACT 57.367 50.000 13.12 1.24 45.42 3.85
689 1575 2.909217 AGGAGGTGCTTCTAAGGACTT 58.091 47.619 13.12 6.52 45.42 3.01
690 1576 3.252351 AGGAGGTGCTTCTAAGGACTTT 58.748 45.455 13.12 3.63 45.42 2.66
691 1577 3.653352 AGGAGGTGCTTCTAAGGACTTTT 59.347 43.478 13.12 1.47 45.42 2.27
692 1578 4.844655 AGGAGGTGCTTCTAAGGACTTTTA 59.155 41.667 13.12 0.00 45.42 1.52
693 1579 5.309806 AGGAGGTGCTTCTAAGGACTTTTAA 59.690 40.000 13.12 0.00 45.42 1.52
694 1580 5.411977 GGAGGTGCTTCTAAGGACTTTTAAC 59.588 44.000 13.12 0.00 45.42 2.01
695 1581 5.937111 AGGTGCTTCTAAGGACTTTTAACA 58.063 37.500 13.12 0.00 45.42 2.41
696 1582 6.362248 AGGTGCTTCTAAGGACTTTTAACAA 58.638 36.000 13.12 0.00 45.42 2.83
697 1583 6.831868 AGGTGCTTCTAAGGACTTTTAACAAA 59.168 34.615 13.12 0.00 45.42 2.83
698 1584 7.340999 AGGTGCTTCTAAGGACTTTTAACAAAA 59.659 33.333 13.12 0.00 45.42 2.44
699 1585 7.977293 GGTGCTTCTAAGGACTTTTAACAAAAA 59.023 33.333 13.12 0.00 45.42 1.94
700 1586 9.020813 GTGCTTCTAAGGACTTTTAACAAAAAG 57.979 33.333 7.07 8.64 43.15 2.27
725 1611 1.788229 AAAAGTCCCACCCTGTTTGG 58.212 50.000 0.00 0.00 0.00 3.28
726 1612 0.634465 AAAGTCCCACCCTGTTTGGT 59.366 50.000 0.00 0.00 39.96 3.67
727 1613 0.634465 AAGTCCCACCCTGTTTGGTT 59.366 50.000 0.00 0.00 36.12 3.67
728 1614 0.634465 AGTCCCACCCTGTTTGGTTT 59.366 50.000 0.00 0.00 36.12 3.27
729 1615 0.750249 GTCCCACCCTGTTTGGTTTG 59.250 55.000 0.00 0.00 36.12 2.93
730 1616 1.045911 TCCCACCCTGTTTGGTTTGC 61.046 55.000 0.00 0.00 36.12 3.68
731 1617 1.048160 CCCACCCTGTTTGGTTTGCT 61.048 55.000 0.00 0.00 36.12 3.91
732 1618 1.698506 CCACCCTGTTTGGTTTGCTA 58.301 50.000 0.00 0.00 36.12 3.49
733 1619 1.613437 CCACCCTGTTTGGTTTGCTAG 59.387 52.381 0.00 0.00 36.12 3.42
734 1620 1.613437 CACCCTGTTTGGTTTGCTAGG 59.387 52.381 0.00 0.00 36.12 3.02
735 1621 1.256812 CCCTGTTTGGTTTGCTAGGG 58.743 55.000 0.00 0.00 38.96 3.53
736 1622 1.203001 CCCTGTTTGGTTTGCTAGGGA 60.203 52.381 0.00 0.00 46.19 4.20
737 1623 1.886542 CCTGTTTGGTTTGCTAGGGAC 59.113 52.381 0.00 0.00 0.00 4.46
738 1624 2.489073 CCTGTTTGGTTTGCTAGGGACT 60.489 50.000 0.00 0.00 46.37 3.85
739 1625 3.222603 CTGTTTGGTTTGCTAGGGACTT 58.777 45.455 0.00 0.00 41.75 3.01
740 1626 3.636764 CTGTTTGGTTTGCTAGGGACTTT 59.363 43.478 0.00 0.00 41.75 2.66
741 1627 4.027437 TGTTTGGTTTGCTAGGGACTTTT 58.973 39.130 0.00 0.00 41.75 2.27
742 1628 4.468153 TGTTTGGTTTGCTAGGGACTTTTT 59.532 37.500 0.00 0.00 41.75 1.94
743 1629 4.929819 TTGGTTTGCTAGGGACTTTTTC 57.070 40.909 0.00 0.00 41.75 2.29
744 1630 4.178956 TGGTTTGCTAGGGACTTTTTCT 57.821 40.909 0.00 0.00 41.75 2.52
745 1631 5.313280 TGGTTTGCTAGGGACTTTTTCTA 57.687 39.130 0.00 0.00 41.75 2.10
746 1632 5.313712 TGGTTTGCTAGGGACTTTTTCTAG 58.686 41.667 0.00 0.00 41.75 2.43
747 1633 5.163131 TGGTTTGCTAGGGACTTTTTCTAGT 60.163 40.000 0.00 0.00 41.75 2.57
748 1634 5.411977 GGTTTGCTAGGGACTTTTTCTAGTC 59.588 44.000 0.00 0.00 43.05 2.59
756 1642 3.740115 GACTTTTTCTAGTCCCAGCACA 58.260 45.455 0.00 0.00 38.88 4.57
757 1643 4.134563 GACTTTTTCTAGTCCCAGCACAA 58.865 43.478 0.00 0.00 38.88 3.33
758 1644 4.532834 ACTTTTTCTAGTCCCAGCACAAA 58.467 39.130 0.00 0.00 0.00 2.83
759 1645 4.953579 ACTTTTTCTAGTCCCAGCACAAAA 59.046 37.500 0.00 0.00 0.00 2.44
760 1646 5.420739 ACTTTTTCTAGTCCCAGCACAAAAA 59.579 36.000 0.00 0.00 0.00 1.94
778 1664 2.838637 AAAGTCCCTGGAACCAAACA 57.161 45.000 0.00 0.00 0.00 2.83
779 1665 2.067365 AAGTCCCTGGAACCAAACAC 57.933 50.000 0.00 0.00 0.00 3.32
780 1666 0.185175 AGTCCCTGGAACCAAACACC 59.815 55.000 0.00 0.00 0.00 4.16
781 1667 0.826256 GTCCCTGGAACCAAACACCC 60.826 60.000 0.00 0.00 0.00 4.61
782 1668 1.533033 CCCTGGAACCAAACACCCC 60.533 63.158 0.00 0.00 0.00 4.95
783 1669 1.533033 CCTGGAACCAAACACCCCC 60.533 63.158 0.00 0.00 0.00 5.40
784 1670 1.541672 CTGGAACCAAACACCCCCT 59.458 57.895 0.00 0.00 0.00 4.79
785 1671 0.105709 CTGGAACCAAACACCCCCTT 60.106 55.000 0.00 0.00 0.00 3.95
786 1672 1.146152 CTGGAACCAAACACCCCCTTA 59.854 52.381 0.00 0.00 0.00 2.69
793 1679 3.141272 ACCAAACACCCCCTTAATCTGAA 59.859 43.478 0.00 0.00 0.00 3.02
857 1743 1.807142 CACAGCGCCGAGATAGATCTA 59.193 52.381 2.29 4.57 37.25 1.98
858 1744 2.421775 CACAGCGCCGAGATAGATCTAT 59.578 50.000 15.26 15.26 37.25 1.98
859 1745 2.680841 ACAGCGCCGAGATAGATCTATC 59.319 50.000 28.38 28.38 41.63 2.08
1036 1935 2.118233 GATCCAGCCGATCCCCTTCC 62.118 65.000 0.75 0.00 41.51 3.46
1037 1936 3.878667 CCAGCCGATCCCCTTCCC 61.879 72.222 0.00 0.00 0.00 3.97
1038 1937 2.770048 CAGCCGATCCCCTTCCCT 60.770 66.667 0.00 0.00 0.00 4.20
1039 1938 2.042930 AGCCGATCCCCTTCCCTT 59.957 61.111 0.00 0.00 0.00 3.95
1040 1939 2.073101 AGCCGATCCCCTTCCCTTC 61.073 63.158 0.00 0.00 0.00 3.46
1097 1996 2.436646 CACCACCACATCCGGAGC 60.437 66.667 11.34 0.00 0.00 4.70
1100 1999 2.202797 CACCACATCCGGAGCGAG 60.203 66.667 11.34 1.92 0.00 5.03
1109 2008 1.145156 CCGGAGCGAGAGAGAGAGA 59.855 63.158 0.00 0.00 0.00 3.10
1182 2081 4.699522 GCGGCGGAGACCAAACCT 62.700 66.667 9.78 0.00 0.00 3.50
1273 2181 2.593257 CCAAGTACTTCGACTTCGTCC 58.407 52.381 4.77 0.00 37.57 4.79
1405 2319 2.237893 TCCCGGAAATTTACCCTGACTC 59.762 50.000 0.73 0.00 0.00 3.36
1420 2334 3.431626 CCTGACTCGCTCTTCTCTCTCTA 60.432 52.174 0.00 0.00 0.00 2.43
1563 2477 4.396166 TGGAAAGAGATTGCCTCGATTTTC 59.604 41.667 0.00 0.00 46.49 2.29
1587 2501 3.386402 TCTGATTTGGGTTGGGTTGTTTC 59.614 43.478 0.00 0.00 0.00 2.78
1825 2770 3.547746 ACCTCGTATCTCTCCTTCTGTC 58.452 50.000 0.00 0.00 0.00 3.51
1876 2821 5.126869 TGTTTGCCTGTCTTTCTTCATTTGA 59.873 36.000 0.00 0.00 0.00 2.69
2098 3043 2.436115 GTTGGGTCTAGCACGCCC 60.436 66.667 0.00 0.00 42.64 6.13
2149 3094 1.754380 TTACCACTGCTGCGACCACT 61.754 55.000 0.00 0.00 0.00 4.00
2150 3095 2.154798 TACCACTGCTGCGACCACTC 62.155 60.000 0.00 0.00 0.00 3.51
2151 3096 3.108289 CACTGCTGCGACCACTCG 61.108 66.667 0.00 0.00 43.28 4.18
2265 3213 1.009829 CAGTCCTCGCTGGCATTAAC 58.990 55.000 0.00 0.00 35.26 2.01
2289 3237 5.413309 AAGAAGAGTGTGATCAAGTAGGG 57.587 43.478 0.00 0.00 0.00 3.53
2314 3266 7.916450 GGGAAATATATGCTGACTCGTAGATAC 59.084 40.741 0.00 0.00 33.89 2.24
2358 3310 4.391830 TGAGATGGTTTGCTTAACGATGTC 59.608 41.667 13.23 13.23 42.11 3.06
2455 3407 4.261741 GCAAGAAAATCAGGCTGTGAAGAA 60.262 41.667 15.27 0.00 39.19 2.52
2540 3492 5.989777 ACTTGTCCATGTACTGTGAACTTAC 59.010 40.000 0.00 0.00 0.00 2.34
2551 3503 4.881273 ACTGTGAACTTACAAATCACTGCA 59.119 37.500 10.61 0.00 42.97 4.41
2579 3531 4.503910 CAGATATTGAACGTCAAGTCCCA 58.496 43.478 0.00 0.00 40.05 4.37
2664 3619 2.512286 CACCGCCATGATGACGCT 60.512 61.111 0.00 0.00 0.00 5.07
2681 3636 0.248843 GCTCACTCTCTGAAGGTGGG 59.751 60.000 8.93 7.28 34.86 4.61
2904 3892 0.813210 GCAGCCACTACAGCAGATCC 60.813 60.000 0.00 0.00 0.00 3.36
2986 3974 4.511617 TTTTGTTATTCTTGGCGCATGA 57.488 36.364 10.83 0.05 0.00 3.07
2987 3975 4.717233 TTTGTTATTCTTGGCGCATGAT 57.283 36.364 10.83 0.00 0.00 2.45
3194 4454 5.479375 AGCAATCCAGAGTTTGATGAATTGT 59.521 36.000 0.00 0.00 0.00 2.71
3195 4455 6.660521 AGCAATCCAGAGTTTGATGAATTGTA 59.339 34.615 0.00 0.00 0.00 2.41
3640 5022 4.738740 CCGAGTGATCGTCCACTAATTAAC 59.261 45.833 11.26 0.33 46.45 2.01
3711 5093 1.398762 CGTCTCGACATGCTGACACG 61.399 60.000 0.00 0.00 0.00 4.49
4081 5475 5.695851 AGGTCTTGTACATTTCAAGCTTG 57.304 39.130 20.81 20.81 41.13 4.01
4463 5857 6.092122 TGAAATGTGTTTATACTCTCTTGCCG 59.908 38.462 0.00 0.00 0.00 5.69
4473 5867 2.289945 ACTCTCTTGCCGATCTTTGCTT 60.290 45.455 0.00 0.00 0.00 3.91
4573 5967 5.337169 GCAGAAGAAGCTAGAGGAAGAGAAA 60.337 44.000 0.00 0.00 0.00 2.52
4733 6127 2.398554 CCGAAACCATGCACGAGGG 61.399 63.158 6.62 0.86 0.00 4.30
4812 6206 4.066578 TGGAAGAAAGAGAGAGGATGGA 57.933 45.455 0.00 0.00 0.00 3.41
4914 6308 5.571784 ACGTACGACCTCTTGATTTATGA 57.428 39.130 24.41 0.00 0.00 2.15
4938 6332 6.875972 TTTATCTATATCTGGGAGGAAGGC 57.124 41.667 0.00 0.00 0.00 4.35
4939 6333 4.708420 ATCTATATCTGGGAGGAAGGCT 57.292 45.455 0.00 0.00 0.00 4.58
4940 6334 5.822774 ATCTATATCTGGGAGGAAGGCTA 57.177 43.478 0.00 0.00 0.00 3.93
4942 6336 5.334421 TCTATATCTGGGAGGAAGGCTAAC 58.666 45.833 0.00 0.00 0.00 2.34
4945 6339 1.909302 TCTGGGAGGAAGGCTAACTTG 59.091 52.381 0.00 0.00 40.21 3.16
5067 6503 9.912634 GGTTCAAAGATCAGAATTTGATAACAA 57.087 29.630 12.59 0.00 46.51 2.83
5236 6673 2.478894 ACGAATTTGCACAGAAGGTACG 59.521 45.455 0.00 0.00 0.00 3.67
5237 6674 2.734606 CGAATTTGCACAGAAGGTACGA 59.265 45.455 0.00 0.00 0.00 3.43
5239 6676 4.464112 GAATTTGCACAGAAGGTACGAAC 58.536 43.478 0.00 0.00 0.00 3.95
5240 6677 2.605837 TTGCACAGAAGGTACGAACA 57.394 45.000 0.00 0.00 0.00 3.18
5241 6678 2.831685 TGCACAGAAGGTACGAACAT 57.168 45.000 0.00 0.00 0.00 2.71
5242 6679 3.945981 TGCACAGAAGGTACGAACATA 57.054 42.857 0.00 0.00 0.00 2.29
5243 6680 3.581755 TGCACAGAAGGTACGAACATAC 58.418 45.455 0.00 0.00 0.00 2.39
5244 6681 3.006003 TGCACAGAAGGTACGAACATACA 59.994 43.478 0.00 0.00 0.00 2.29
5245 6682 4.181578 GCACAGAAGGTACGAACATACAT 58.818 43.478 0.00 0.00 0.00 2.29
5246 6683 5.105675 TGCACAGAAGGTACGAACATACATA 60.106 40.000 0.00 0.00 0.00 2.29
5247 6684 5.231568 GCACAGAAGGTACGAACATACATAC 59.768 44.000 0.00 0.00 0.00 2.39
5248 6685 6.327154 CACAGAAGGTACGAACATACATACA 58.673 40.000 0.00 0.00 0.00 2.29
5249 6686 6.252869 CACAGAAGGTACGAACATACATACAC 59.747 42.308 0.00 0.00 0.00 2.90
5250 6687 5.454554 CAGAAGGTACGAACATACATACACG 59.545 44.000 0.00 0.00 0.00 4.49
5251 6688 3.699067 AGGTACGAACATACATACACGC 58.301 45.455 0.00 0.00 0.00 5.34
5252 6689 2.465109 GGTACGAACATACATACACGCG 59.535 50.000 3.53 3.53 0.00 6.01
5253 6690 2.547913 ACGAACATACATACACGCGA 57.452 45.000 15.93 0.00 0.00 5.87
5254 6691 2.179589 ACGAACATACATACACGCGAC 58.820 47.619 15.93 0.00 0.00 5.19
5255 6692 1.184268 CGAACATACATACACGCGACG 59.816 52.381 15.93 5.81 0.00 5.12
5317 6770 3.491104 CCATAGCGACTAACCAACCTCTC 60.491 52.174 0.00 0.00 0.00 3.20
5318 6771 1.926108 AGCGACTAACCAACCTCTCT 58.074 50.000 0.00 0.00 0.00 3.10
5521 6974 1.837439 AGGCACCCGTTCATGAGATAA 59.163 47.619 0.00 0.00 0.00 1.75
5522 6975 2.158900 AGGCACCCGTTCATGAGATAAG 60.159 50.000 0.00 0.00 0.00 1.73
5523 6976 2.158957 GGCACCCGTTCATGAGATAAGA 60.159 50.000 0.00 0.00 0.00 2.10
5524 6977 3.531538 GCACCCGTTCATGAGATAAGAA 58.468 45.455 0.00 0.00 0.00 2.52
5525 6978 4.130118 GCACCCGTTCATGAGATAAGAAT 58.870 43.478 0.00 0.00 0.00 2.40
5526 6979 5.297547 GCACCCGTTCATGAGATAAGAATA 58.702 41.667 0.00 0.00 0.00 1.75
5547 7000 3.225104 AGATGATCTCAGTCTCCAGCTC 58.775 50.000 0.00 0.00 0.00 4.09
5608 7076 3.129262 TCATCCCTATCTGGTCACCAA 57.871 47.619 0.00 0.00 30.80 3.67
5664 7132 1.202582 CCTCAGAGTTCCGTGGTACTG 59.797 57.143 2.65 0.00 0.00 2.74
5666 7134 3.079578 CTCAGAGTTCCGTGGTACTGTA 58.920 50.000 2.65 0.00 0.00 2.74
5783 7255 4.739716 CCAGTTTATCTGTTGTTTGTGCAC 59.260 41.667 10.75 10.75 42.19 4.57
5868 7340 4.275936 ACTCGTGCTGCTTTTGTTCTATTT 59.724 37.500 0.00 0.00 0.00 1.40
5869 7341 4.536065 TCGTGCTGCTTTTGTTCTATTTG 58.464 39.130 0.00 0.00 0.00 2.32
5870 7342 4.274705 TCGTGCTGCTTTTGTTCTATTTGA 59.725 37.500 0.00 0.00 0.00 2.69
5871 7343 5.048782 TCGTGCTGCTTTTGTTCTATTTGAT 60.049 36.000 0.00 0.00 0.00 2.57
5902 7375 6.446318 GCTTGAGTTTTGTTCCACATTATGA 58.554 36.000 0.00 0.00 0.00 2.15
5946 7421 1.407434 AAAACACATGCGCAACATCG 58.593 45.000 17.11 3.94 36.64 3.84
5947 7422 0.310543 AAACACATGCGCAACATCGT 59.689 45.000 17.11 4.67 36.64 3.73
5948 7423 0.110238 AACACATGCGCAACATCGTC 60.110 50.000 17.11 0.00 36.64 4.20
6026 7502 7.492352 AATAAACAACTCGCTTCTTTGTACT 57.508 32.000 0.00 0.00 33.10 2.73
6028 7504 5.405331 AACAACTCGCTTCTTTGTACTTC 57.595 39.130 0.00 0.00 33.10 3.01
6029 7505 3.808174 ACAACTCGCTTCTTTGTACTTCC 59.192 43.478 0.00 0.00 31.65 3.46
6030 7506 4.058817 CAACTCGCTTCTTTGTACTTCCT 58.941 43.478 0.00 0.00 0.00 3.36
6031 7507 3.915536 ACTCGCTTCTTTGTACTTCCTC 58.084 45.455 0.00 0.00 0.00 3.71
6032 7508 3.254892 CTCGCTTCTTTGTACTTCCTCC 58.745 50.000 0.00 0.00 0.00 4.30
6033 7509 1.993370 CGCTTCTTTGTACTTCCTCCG 59.007 52.381 0.00 0.00 0.00 4.63
6034 7510 2.609737 CGCTTCTTTGTACTTCCTCCGT 60.610 50.000 0.00 0.00 0.00 4.69
6035 7511 2.994578 GCTTCTTTGTACTTCCTCCGTC 59.005 50.000 0.00 0.00 0.00 4.79
6036 7512 3.586892 CTTCTTTGTACTTCCTCCGTCC 58.413 50.000 0.00 0.00 0.00 4.79
6037 7513 1.542915 TCTTTGTACTTCCTCCGTCCG 59.457 52.381 0.00 0.00 0.00 4.79
6039 7515 1.619654 TTGTACTTCCTCCGTCCGAA 58.380 50.000 0.00 0.00 0.00 4.30
6040 7516 1.619654 TGTACTTCCTCCGTCCGAAA 58.380 50.000 0.00 0.00 0.00 3.46
6042 7518 2.564062 TGTACTTCCTCCGTCCGAAAAT 59.436 45.455 0.00 0.00 0.00 1.82
6044 7520 3.242549 ACTTCCTCCGTCCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
6045 7521 2.830321 ACTTCCTCCGTCCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
6046 7522 3.260128 ACTTCCTCCGTCCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
6047 7523 3.241067 TCCTCCGTCCGAAAATACTTG 57.759 47.619 0.00 0.00 0.00 3.16
6048 7524 2.564062 TCCTCCGTCCGAAAATACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
6049 7525 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
6050 7526 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
6051 7527 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
6052 7528 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
6053 7529 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
6054 7530 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
6055 7531 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
6056 7532 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
6057 7533 6.853872 CGTCCGAAAATACTTGTCATCAAAAA 59.146 34.615 0.00 0.00 32.87 1.94
6058 7534 7.059488 CGTCCGAAAATACTTGTCATCAAAAAG 59.941 37.037 0.00 0.00 32.87 2.27
6059 7535 7.326063 GTCCGAAAATACTTGTCATCAAAAAGG 59.674 37.037 0.00 0.00 32.87 3.11
6060 7536 7.229707 TCCGAAAATACTTGTCATCAAAAAGGA 59.770 33.333 0.00 0.00 32.87 3.36
6061 7537 8.028938 CCGAAAATACTTGTCATCAAAAAGGAT 58.971 33.333 0.00 0.00 32.87 3.24
6068 7544 7.670364 ACTTGTCATCAAAAAGGATAAAAGGG 58.330 34.615 0.00 0.00 32.87 3.95
6069 7545 6.603940 TGTCATCAAAAAGGATAAAAGGGG 57.396 37.500 0.00 0.00 0.00 4.79
6070 7546 6.081356 TGTCATCAAAAAGGATAAAAGGGGT 58.919 36.000 0.00 0.00 0.00 4.95
6071 7547 7.242359 TGTCATCAAAAAGGATAAAAGGGGTA 58.758 34.615 0.00 0.00 0.00 3.69
6072 7548 7.898636 TGTCATCAAAAAGGATAAAAGGGGTAT 59.101 33.333 0.00 0.00 0.00 2.73
6073 7549 8.414003 GTCATCAAAAAGGATAAAAGGGGTATC 58.586 37.037 0.00 0.00 0.00 2.24
6074 7550 8.343787 TCATCAAAAAGGATAAAAGGGGTATCT 58.656 33.333 0.00 0.00 0.00 1.98
6075 7551 9.640952 CATCAAAAAGGATAAAAGGGGTATCTA 57.359 33.333 0.00 0.00 0.00 1.98
6076 7552 9.868160 ATCAAAAAGGATAAAAGGGGTATCTAG 57.132 33.333 0.00 0.00 0.00 2.43
6077 7553 9.064602 TCAAAAAGGATAAAAGGGGTATCTAGA 57.935 33.333 0.00 0.00 0.00 2.43
6078 7554 9.121658 CAAAAAGGATAAAAGGGGTATCTAGAC 57.878 37.037 0.00 0.00 0.00 2.59
6079 7555 6.667558 AAGGATAAAAGGGGTATCTAGACG 57.332 41.667 0.00 0.00 0.00 4.18
6080 7556 5.713807 AGGATAAAAGGGGTATCTAGACGT 58.286 41.667 0.00 0.00 0.00 4.34
6081 7557 6.856757 AGGATAAAAGGGGTATCTAGACGTA 58.143 40.000 0.00 0.00 0.00 3.57
6082 7558 7.477008 AGGATAAAAGGGGTATCTAGACGTAT 58.523 38.462 0.00 0.00 0.00 3.06
6083 7559 7.954620 AGGATAAAAGGGGTATCTAGACGTATT 59.045 37.037 0.00 0.00 0.00 1.89
6084 7560 8.591940 GGATAAAAGGGGTATCTAGACGTATTT 58.408 37.037 0.00 0.00 0.00 1.40
6085 7561 9.993454 GATAAAAGGGGTATCTAGACGTATTTT 57.007 33.333 0.00 1.53 0.00 1.82
6088 7564 8.544687 AAAGGGGTATCTAGACGTATTTTAGT 57.455 34.615 0.00 0.00 0.00 2.24
6089 7565 8.544687 AAGGGGTATCTAGACGTATTTTAGTT 57.455 34.615 0.00 0.00 0.00 2.24
6090 7566 8.175925 AGGGGTATCTAGACGTATTTTAGTTC 57.824 38.462 0.00 0.00 0.00 3.01
6091 7567 8.003629 AGGGGTATCTAGACGTATTTTAGTTCT 58.996 37.037 0.00 0.00 0.00 3.01
6104 7580 2.336945 TAGTTCTAGATCCACCGCGA 57.663 50.000 8.23 0.00 0.00 5.87
6182 7658 1.405461 CTTCGCGAGTTTCTTCGTCA 58.595 50.000 9.59 0.00 42.38 4.35
6191 7667 1.068055 GTTTCTTCGTCAGCCCGTCTA 60.068 52.381 0.00 0.00 0.00 2.59
6205 7681 1.003812 CCGTCTATGGGGTGGTTTGAA 59.996 52.381 0.00 0.00 0.00 2.69
6221 7697 4.340263 GTTTGAACGTGACTCCTGTTTTC 58.660 43.478 0.00 0.00 0.00 2.29
6230 7706 1.208535 ACTCCTGTTTTCGTCCACACA 59.791 47.619 0.00 0.00 0.00 3.72
6231 7707 1.867233 CTCCTGTTTTCGTCCACACAG 59.133 52.381 0.00 0.00 37.07 3.66
6235 7711 0.951558 GTTTTCGTCCACACAGCCAT 59.048 50.000 0.00 0.00 0.00 4.40
6251 7727 2.124109 ATCGCCAGCCTCTCGAGA 60.124 61.111 15.70 15.70 35.61 4.04
6262 7738 4.933064 CTCGAGATGGGCGACGGC 62.933 72.222 13.84 13.84 38.90 5.68
6337 7821 3.153919 TGAGGTGGTTTTTGGAGCATAC 58.846 45.455 0.00 0.00 0.00 2.39
6339 7823 2.890945 AGGTGGTTTTTGGAGCATACAC 59.109 45.455 0.00 0.00 0.00 2.90
6366 7850 1.928868 AGGTGAGCCATTTCTTTGGG 58.071 50.000 0.00 0.00 37.24 4.12
6470 7954 4.253685 AGGATTCGATGATGTTGTCGTTT 58.746 39.130 0.00 0.00 38.85 3.60
6717 8201 1.125093 TGTCCTTGGGGTCACGTCAT 61.125 55.000 0.00 0.00 0.00 3.06
6741 8225 2.681778 CCACTCGAGCTCCCTGGT 60.682 66.667 13.61 0.00 0.00 4.00
6745 8229 0.553819 ACTCGAGCTCCCTGGTAGAT 59.446 55.000 13.61 0.00 0.00 1.98
6769 8253 1.569493 CGAGAAACCAAGTGCACCG 59.431 57.895 14.63 4.90 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 0.674895 ATCCACGAACCTGCTCTTGC 60.675 55.000 0.00 0.00 40.20 4.01
97 102 0.734889 CCCCAGCGTTCTTGCTTATG 59.265 55.000 0.00 0.00 44.46 1.90
140 145 2.230189 ATCTCCCCTCCGTCAGCTCA 62.230 60.000 0.00 0.00 0.00 4.26
141 146 1.045911 AATCTCCCCTCCGTCAGCTC 61.046 60.000 0.00 0.00 0.00 4.09
142 147 1.002274 AATCTCCCCTCCGTCAGCT 59.998 57.895 0.00 0.00 0.00 4.24
143 148 1.330655 TGAATCTCCCCTCCGTCAGC 61.331 60.000 0.00 0.00 0.00 4.26
144 149 0.749649 CTGAATCTCCCCTCCGTCAG 59.250 60.000 0.00 0.00 0.00 3.51
162 167 2.106684 GTTGTCACCCTCCTCTTTTCCT 59.893 50.000 0.00 0.00 0.00 3.36
191 196 1.742880 CACTCCCACGATGCCAGTG 60.743 63.158 0.00 0.00 39.19 3.66
201 206 0.543749 ATGCTCTAAGGCACTCCCAC 59.456 55.000 0.00 0.00 45.36 4.61
210 215 2.590073 CGACGCTGATATGCTCTAAGG 58.410 52.381 0.00 0.00 0.00 2.69
229 709 2.202932 CCGTGATCCCCTTCAGCG 60.203 66.667 0.00 0.00 0.00 5.18
232 712 1.002403 TAGCCCGTGATCCCCTTCA 59.998 57.895 0.00 0.00 0.00 3.02
320 1187 7.773224 AGGATTATTTCACACAATATTCGGTGA 59.227 33.333 11.70 12.10 38.41 4.02
399 1266 2.607187 CTAACAACTCGCCCTACTGTG 58.393 52.381 0.00 0.00 0.00 3.66
417 1284 0.753262 GGATGCCTTCTTCTCGCCTA 59.247 55.000 0.00 0.00 0.00 3.93
470 1337 7.551035 TGATGCAATGTAAAACTTGCTTTTT 57.449 28.000 8.52 0.00 46.16 1.94
471 1338 7.441760 TCATGATGCAATGTAAAACTTGCTTTT 59.558 29.630 8.52 0.00 46.16 2.27
472 1339 6.930164 TCATGATGCAATGTAAAACTTGCTTT 59.070 30.769 8.52 0.00 46.16 3.51
473 1340 6.366877 GTCATGATGCAATGTAAAACTTGCTT 59.633 34.615 0.00 2.61 46.16 3.91
474 1341 5.865552 GTCATGATGCAATGTAAAACTTGCT 59.134 36.000 0.00 0.00 46.16 3.91
475 1342 5.062558 GGTCATGATGCAATGTAAAACTTGC 59.937 40.000 0.00 0.51 46.19 4.01
476 1343 5.286797 CGGTCATGATGCAATGTAAAACTTG 59.713 40.000 0.00 0.00 0.00 3.16
477 1344 5.048083 ACGGTCATGATGCAATGTAAAACTT 60.048 36.000 0.00 0.00 0.00 2.66
478 1345 4.458989 ACGGTCATGATGCAATGTAAAACT 59.541 37.500 0.00 0.00 0.00 2.66
479 1346 4.732784 ACGGTCATGATGCAATGTAAAAC 58.267 39.130 0.00 0.00 0.00 2.43
480 1347 5.384063 AACGGTCATGATGCAATGTAAAA 57.616 34.783 0.00 0.00 0.00 1.52
481 1348 6.502136 TTAACGGTCATGATGCAATGTAAA 57.498 33.333 0.00 0.00 0.00 2.01
482 1349 5.448496 GCTTAACGGTCATGATGCAATGTAA 60.448 40.000 0.00 0.00 0.00 2.41
483 1350 4.035091 GCTTAACGGTCATGATGCAATGTA 59.965 41.667 0.00 0.00 0.00 2.29
484 1351 3.181497 GCTTAACGGTCATGATGCAATGT 60.181 43.478 0.00 0.00 0.00 2.71
485 1352 3.065786 AGCTTAACGGTCATGATGCAATG 59.934 43.478 0.00 0.00 0.00 2.82
486 1353 3.282021 AGCTTAACGGTCATGATGCAAT 58.718 40.909 0.00 0.00 0.00 3.56
533 1400 3.754323 GGTACTGCTACAGCTATCGATCT 59.246 47.826 0.00 0.00 42.66 2.75
568 1442 2.994578 GGACTAGCAACTTTTCGAGGAC 59.005 50.000 0.00 0.00 0.00 3.85
569 1443 2.352421 CGGACTAGCAACTTTTCGAGGA 60.352 50.000 0.00 0.00 0.00 3.71
570 1444 1.993370 CGGACTAGCAACTTTTCGAGG 59.007 52.381 0.00 0.00 0.00 4.63
571 1445 1.993370 CCGGACTAGCAACTTTTCGAG 59.007 52.381 0.00 0.00 0.00 4.04
572 1446 1.938016 GCCGGACTAGCAACTTTTCGA 60.938 52.381 5.05 0.00 0.00 3.71
573 1447 0.442699 GCCGGACTAGCAACTTTTCG 59.557 55.000 5.05 0.00 0.00 3.46
574 1448 0.442699 CGCCGGACTAGCAACTTTTC 59.557 55.000 5.05 0.00 0.00 2.29
575 1449 0.953960 CCGCCGGACTAGCAACTTTT 60.954 55.000 5.05 0.00 0.00 2.27
576 1450 1.375523 CCGCCGGACTAGCAACTTT 60.376 57.895 5.05 0.00 0.00 2.66
577 1451 2.264794 CCGCCGGACTAGCAACTT 59.735 61.111 5.05 0.00 0.00 2.66
578 1452 2.678934 TCCGCCGGACTAGCAACT 60.679 61.111 5.05 0.00 0.00 3.16
602 1488 3.400255 GACTAGAGAACCAAACACCACC 58.600 50.000 0.00 0.00 0.00 4.61
603 1489 3.071167 AGGACTAGAGAACCAAACACCAC 59.929 47.826 0.00 0.00 0.00 4.16
604 1490 3.314693 AGGACTAGAGAACCAAACACCA 58.685 45.455 0.00 0.00 0.00 4.17
605 1491 4.081586 CCTAGGACTAGAGAACCAAACACC 60.082 50.000 1.05 0.00 35.21 4.16
606 1492 4.771054 TCCTAGGACTAGAGAACCAAACAC 59.229 45.833 7.62 0.00 35.21 3.32
607 1493 4.771054 GTCCTAGGACTAGAGAACCAAACA 59.229 45.833 31.12 0.00 41.57 2.83
608 1494 5.327616 GTCCTAGGACTAGAGAACCAAAC 57.672 47.826 31.12 3.26 41.57 2.93
640 1526 6.669631 AGTCTTTTTCAAAAAGTCCTAGGGA 58.330 36.000 19.82 0.00 0.00 4.20
641 1527 6.773200 AGAGTCTTTTTCAAAAAGTCCTAGGG 59.227 38.462 19.82 0.00 0.00 3.53
642 1528 7.809546 AGAGTCTTTTTCAAAAAGTCCTAGG 57.190 36.000 19.82 0.82 0.00 3.02
645 1531 8.687242 CCTTAAGAGTCTTTTTCAAAAAGTCCT 58.313 33.333 19.82 16.49 0.00 3.85
646 1532 8.683615 TCCTTAAGAGTCTTTTTCAAAAAGTCC 58.316 33.333 19.82 12.77 0.00 3.85
647 1533 9.723447 CTCCTTAAGAGTCTTTTTCAAAAAGTC 57.277 33.333 19.82 15.25 37.87 3.01
648 1534 8.687242 CCTCCTTAAGAGTCTTTTTCAAAAAGT 58.313 33.333 19.82 4.20 41.47 2.66
649 1535 8.687242 ACCTCCTTAAGAGTCTTTTTCAAAAAG 58.313 33.333 15.46 15.46 41.47 2.27
650 1536 8.466798 CACCTCCTTAAGAGTCTTTTTCAAAAA 58.533 33.333 11.40 0.00 41.47 1.94
651 1537 7.416326 GCACCTCCTTAAGAGTCTTTTTCAAAA 60.416 37.037 11.40 0.00 41.47 2.44
652 1538 6.039382 GCACCTCCTTAAGAGTCTTTTTCAAA 59.961 38.462 11.40 0.00 41.47 2.69
653 1539 5.531287 GCACCTCCTTAAGAGTCTTTTTCAA 59.469 40.000 11.40 0.00 41.47 2.69
654 1540 5.063880 GCACCTCCTTAAGAGTCTTTTTCA 58.936 41.667 11.40 0.00 41.47 2.69
655 1541 5.309638 AGCACCTCCTTAAGAGTCTTTTTC 58.690 41.667 11.40 0.00 41.47 2.29
656 1542 5.311844 AGCACCTCCTTAAGAGTCTTTTT 57.688 39.130 11.40 0.00 41.47 1.94
657 1543 4.984146 AGCACCTCCTTAAGAGTCTTTT 57.016 40.909 11.40 0.00 41.47 2.27
658 1544 4.595350 AGAAGCACCTCCTTAAGAGTCTTT 59.405 41.667 11.40 0.00 41.47 2.52
659 1545 4.164204 AGAAGCACCTCCTTAAGAGTCTT 58.836 43.478 10.87 10.87 41.47 3.01
660 1546 3.785364 AGAAGCACCTCCTTAAGAGTCT 58.215 45.455 3.36 0.00 41.47 3.24
661 1547 5.394773 CCTTAGAAGCACCTCCTTAAGAGTC 60.395 48.000 3.36 0.00 41.47 3.36
662 1548 4.468153 CCTTAGAAGCACCTCCTTAAGAGT 59.532 45.833 3.36 0.00 41.47 3.24
663 1549 4.712337 TCCTTAGAAGCACCTCCTTAAGAG 59.288 45.833 3.36 0.00 42.83 2.85
664 1550 4.466726 GTCCTTAGAAGCACCTCCTTAAGA 59.533 45.833 3.36 0.00 0.00 2.10
665 1551 4.468153 AGTCCTTAGAAGCACCTCCTTAAG 59.532 45.833 0.00 0.00 0.00 1.85
666 1552 4.426704 AGTCCTTAGAAGCACCTCCTTAA 58.573 43.478 0.00 0.00 0.00 1.85
667 1553 4.062490 AGTCCTTAGAAGCACCTCCTTA 57.938 45.455 0.00 0.00 0.00 2.69
668 1554 2.909217 AGTCCTTAGAAGCACCTCCTT 58.091 47.619 0.00 0.00 0.00 3.36
669 1555 2.632763 AGTCCTTAGAAGCACCTCCT 57.367 50.000 0.00 0.00 0.00 3.69
670 1556 3.704800 AAAGTCCTTAGAAGCACCTCC 57.295 47.619 0.00 0.00 0.00 4.30
671 1557 5.995897 TGTTAAAAGTCCTTAGAAGCACCTC 59.004 40.000 0.00 0.00 0.00 3.85
672 1558 5.937111 TGTTAAAAGTCCTTAGAAGCACCT 58.063 37.500 0.00 0.00 0.00 4.00
673 1559 6.628919 TTGTTAAAAGTCCTTAGAAGCACC 57.371 37.500 0.00 0.00 0.00 5.01
674 1560 8.920509 TTTTTGTTAAAAGTCCTTAGAAGCAC 57.079 30.769 0.00 0.00 0.00 4.40
705 1591 2.115427 CCAAACAGGGTGGGACTTTTT 58.885 47.619 0.00 0.00 32.03 1.94
706 1592 1.007842 ACCAAACAGGGTGGGACTTTT 59.992 47.619 0.00 0.00 43.89 2.27
707 1593 0.634465 ACCAAACAGGGTGGGACTTT 59.366 50.000 0.00 0.00 43.89 2.66
708 1594 0.634465 AACCAAACAGGGTGGGACTT 59.366 50.000 0.00 0.00 41.32 3.01
709 1595 0.634465 AAACCAAACAGGGTGGGACT 59.366 50.000 0.00 0.00 41.32 3.85
710 1596 0.750249 CAAACCAAACAGGGTGGGAC 59.250 55.000 0.00 0.00 41.32 4.46
711 1597 1.045911 GCAAACCAAACAGGGTGGGA 61.046 55.000 0.00 0.00 41.32 4.37
712 1598 1.048160 AGCAAACCAAACAGGGTGGG 61.048 55.000 0.00 0.00 41.32 4.61
713 1599 1.613437 CTAGCAAACCAAACAGGGTGG 59.387 52.381 0.00 0.00 41.32 4.61
714 1600 1.613437 CCTAGCAAACCAAACAGGGTG 59.387 52.381 0.00 0.00 41.32 4.61
715 1601 1.480498 CCCTAGCAAACCAAACAGGGT 60.480 52.381 0.00 0.00 45.04 4.34
716 1602 1.203001 TCCCTAGCAAACCAAACAGGG 60.203 52.381 0.00 0.00 43.52 4.45
717 1603 1.886542 GTCCCTAGCAAACCAAACAGG 59.113 52.381 0.00 0.00 45.67 4.00
718 1604 2.863809 AGTCCCTAGCAAACCAAACAG 58.136 47.619 0.00 0.00 0.00 3.16
719 1605 3.306472 AAGTCCCTAGCAAACCAAACA 57.694 42.857 0.00 0.00 0.00 2.83
720 1606 4.665833 AAAAGTCCCTAGCAAACCAAAC 57.334 40.909 0.00 0.00 0.00 2.93
721 1607 4.959839 AGAAAAAGTCCCTAGCAAACCAAA 59.040 37.500 0.00 0.00 0.00 3.28
722 1608 4.542697 AGAAAAAGTCCCTAGCAAACCAA 58.457 39.130 0.00 0.00 0.00 3.67
723 1609 4.178956 AGAAAAAGTCCCTAGCAAACCA 57.821 40.909 0.00 0.00 0.00 3.67
724 1610 5.314529 ACTAGAAAAAGTCCCTAGCAAACC 58.685 41.667 0.00 0.00 34.70 3.27
725 1611 6.483385 GACTAGAAAAAGTCCCTAGCAAAC 57.517 41.667 0.00 0.00 40.06 2.93
735 1621 3.740115 TGTGCTGGGACTAGAAAAAGTC 58.260 45.455 0.00 0.00 44.31 3.01
736 1622 3.857157 TGTGCTGGGACTAGAAAAAGT 57.143 42.857 0.00 0.00 0.00 2.66
737 1623 5.514274 TTTTGTGCTGGGACTAGAAAAAG 57.486 39.130 0.00 0.00 0.00 2.27
738 1624 5.923733 TTTTTGTGCTGGGACTAGAAAAA 57.076 34.783 0.00 0.00 0.00 1.94
757 1643 3.196901 GTGTTTGGTTCCAGGGACTTTTT 59.803 43.478 0.00 0.00 34.60 1.94
758 1644 2.764010 GTGTTTGGTTCCAGGGACTTTT 59.236 45.455 0.00 0.00 34.60 2.27
759 1645 2.384828 GTGTTTGGTTCCAGGGACTTT 58.615 47.619 0.00 0.00 34.60 2.66
760 1646 1.411074 GGTGTTTGGTTCCAGGGACTT 60.411 52.381 0.00 0.00 34.60 3.01
761 1647 0.185175 GGTGTTTGGTTCCAGGGACT 59.815 55.000 0.00 0.00 43.88 3.85
762 1648 0.826256 GGGTGTTTGGTTCCAGGGAC 60.826 60.000 0.00 0.00 0.00 4.46
763 1649 1.539665 GGGTGTTTGGTTCCAGGGA 59.460 57.895 0.00 0.00 0.00 4.20
764 1650 1.533033 GGGGTGTTTGGTTCCAGGG 60.533 63.158 0.00 0.00 0.00 4.45
765 1651 1.533033 GGGGGTGTTTGGTTCCAGG 60.533 63.158 0.00 0.00 0.00 4.45
766 1652 0.105709 AAGGGGGTGTTTGGTTCCAG 60.106 55.000 0.00 0.00 0.00 3.86
767 1653 1.232909 TAAGGGGGTGTTTGGTTCCA 58.767 50.000 0.00 0.00 0.00 3.53
768 1654 2.385135 TTAAGGGGGTGTTTGGTTCC 57.615 50.000 0.00 0.00 0.00 3.62
769 1655 3.509967 CAGATTAAGGGGGTGTTTGGTTC 59.490 47.826 0.00 0.00 0.00 3.62
770 1656 3.141272 TCAGATTAAGGGGGTGTTTGGTT 59.859 43.478 0.00 0.00 0.00 3.67
771 1657 2.719705 TCAGATTAAGGGGGTGTTTGGT 59.280 45.455 0.00 0.00 0.00 3.67
772 1658 3.449746 TCAGATTAAGGGGGTGTTTGG 57.550 47.619 0.00 0.00 0.00 3.28
773 1659 4.160252 CCATTCAGATTAAGGGGGTGTTTG 59.840 45.833 0.00 0.00 0.00 2.93
774 1660 4.352893 CCATTCAGATTAAGGGGGTGTTT 58.647 43.478 0.00 0.00 0.00 2.83
775 1661 3.309848 CCCATTCAGATTAAGGGGGTGTT 60.310 47.826 0.00 0.00 44.95 3.32
776 1662 2.244769 CCCATTCAGATTAAGGGGGTGT 59.755 50.000 0.00 0.00 44.95 4.16
777 1663 2.949447 CCCATTCAGATTAAGGGGGTG 58.051 52.381 0.00 0.00 44.95 4.61
781 1667 2.310538 GGTGCCCATTCAGATTAAGGG 58.689 52.381 0.00 0.00 42.55 3.95
782 1668 1.949525 CGGTGCCCATTCAGATTAAGG 59.050 52.381 0.00 0.00 0.00 2.69
783 1669 1.334869 GCGGTGCCCATTCAGATTAAG 59.665 52.381 0.00 0.00 0.00 1.85
784 1670 1.064758 AGCGGTGCCCATTCAGATTAA 60.065 47.619 0.00 0.00 0.00 1.40
785 1671 0.546122 AGCGGTGCCCATTCAGATTA 59.454 50.000 0.00 0.00 0.00 1.75
786 1672 1.033746 CAGCGGTGCCCATTCAGATT 61.034 55.000 0.00 0.00 0.00 2.40
857 1743 1.277557 GTTGGGTGCTGTGAGAGAGAT 59.722 52.381 0.00 0.00 0.00 2.75
858 1744 0.681733 GTTGGGTGCTGTGAGAGAGA 59.318 55.000 0.00 0.00 0.00 3.10
859 1745 0.321122 GGTTGGGTGCTGTGAGAGAG 60.321 60.000 0.00 0.00 0.00 3.20
860 1746 1.053835 TGGTTGGGTGCTGTGAGAGA 61.054 55.000 0.00 0.00 0.00 3.10
864 1750 2.194597 GGTGGTTGGGTGCTGTGA 59.805 61.111 0.00 0.00 0.00 3.58
1036 1935 1.908483 CGGGGAGAAGAAGGGAAGG 59.092 63.158 0.00 0.00 0.00 3.46
1037 1936 1.222113 GCGGGGAGAAGAAGGGAAG 59.778 63.158 0.00 0.00 0.00 3.46
1038 1937 2.298661 GGCGGGGAGAAGAAGGGAA 61.299 63.158 0.00 0.00 0.00 3.97
1039 1938 2.687566 GGCGGGGAGAAGAAGGGA 60.688 66.667 0.00 0.00 0.00 4.20
1040 1939 2.689034 AGGCGGGGAGAAGAAGGG 60.689 66.667 0.00 0.00 0.00 3.95
1097 1996 3.885901 TCTCTCTCTCTCTCTCTCTCTCG 59.114 52.174 0.00 0.00 0.00 4.04
1100 1999 4.443598 GGGTTCTCTCTCTCTCTCTCTCTC 60.444 54.167 0.00 0.00 0.00 3.20
1109 2008 2.158813 CGAGCTAGGGTTCTCTCTCTCT 60.159 54.545 0.00 0.00 0.00 3.10
1273 2181 3.878519 GGCCTCCGTCTCGTCGAG 61.879 72.222 16.33 16.33 0.00 4.04
1405 2319 4.730613 GCAAGAAGTAGAGAGAGAAGAGCG 60.731 50.000 0.00 0.00 0.00 5.03
1420 2334 4.996434 AGGCTGCGCGCAAGAAGT 62.996 61.111 35.50 14.97 41.67 3.01
1563 2477 1.895131 CAACCCAACCCAAATCAGAGG 59.105 52.381 0.00 0.00 0.00 3.69
1587 2501 1.065126 GGTGATGAGAAGGGGGAACAG 60.065 57.143 0.00 0.00 0.00 3.16
1741 2655 2.023673 TGGCAGAAACAGAACACAAGG 58.976 47.619 0.00 0.00 0.00 3.61
1742 2656 2.684881 ACTGGCAGAAACAGAACACAAG 59.315 45.455 23.66 0.00 39.24 3.16
1787 2732 4.082245 ACGAGGTCCAAATAGGCAATTTTG 60.082 41.667 0.00 0.00 35.54 2.44
1825 2770 5.649782 ATGAGGACAAAAGTATGCCAAAG 57.350 39.130 0.00 0.00 0.00 2.77
2043 2988 4.496341 CCACGGCAATGTCAATATCAGAAC 60.496 45.833 0.00 0.00 0.00 3.01
2053 2998 1.268352 GCTAAAACCACGGCAATGTCA 59.732 47.619 0.00 0.00 0.00 3.58
2098 3043 0.813210 GAGGCGGCCTCTGAATCTTG 60.813 60.000 35.90 0.00 46.41 3.02
2149 3094 0.176910 TCACTGTTGACTTGGCACGA 59.823 50.000 0.00 0.00 0.00 4.35
2150 3095 1.003545 CTTCACTGTTGACTTGGCACG 60.004 52.381 0.00 0.00 0.00 5.34
2151 3096 1.334869 CCTTCACTGTTGACTTGGCAC 59.665 52.381 0.00 0.00 0.00 5.01
2265 3213 5.098893 CCTACTTGATCACACTCTTCTTCG 58.901 45.833 0.00 0.00 0.00 3.79
2289 3237 8.679100 AGTATCTACGAGTCAGCATATATTTCC 58.321 37.037 0.00 0.00 0.00 3.13
2314 3266 4.513692 TCAAACTTTGGACAACGGTATCAG 59.486 41.667 1.62 0.00 0.00 2.90
2358 3310 2.514803 CCTAAGAACCAACAACCCAGG 58.485 52.381 0.00 0.00 0.00 4.45
2455 3407 7.168219 TGTACTTCCATCATCTAGTTTTTGCT 58.832 34.615 0.00 0.00 0.00 3.91
2540 3492 4.713824 ATCTGGTCATTGCAGTGATTTG 57.286 40.909 15.51 8.28 0.00 2.32
2551 3503 6.173339 ACTTGACGTTCAATATCTGGTCATT 58.827 36.000 0.00 0.00 35.59 2.57
2658 3613 0.884514 CCTTCAGAGAGTGAGCGTCA 59.115 55.000 0.00 0.00 36.21 4.35
2664 3619 0.487325 TCCCCACCTTCAGAGAGTGA 59.513 55.000 3.93 0.00 33.21 3.41
2709 3664 2.095263 CCCCACTACGCAACAAAATGAG 60.095 50.000 0.00 0.00 0.00 2.90
2777 3732 6.293516 CGGGCAACAATTACAGTAAGTACAAA 60.294 38.462 0.00 0.00 39.74 2.83
2808 3763 0.952280 GAGTCACTGTCACGTCCTGA 59.048 55.000 0.00 0.00 0.00 3.86
2814 3769 6.273071 TGAAATATATGGAGTCACTGTCACG 58.727 40.000 0.00 0.00 0.00 4.35
2943 3931 6.412362 AAATTAAGCAACATACACCCACAA 57.588 33.333 0.00 0.00 0.00 3.33
3045 4305 7.925703 ACTACTAATACCGTTTTCATCATCG 57.074 36.000 0.00 0.00 0.00 3.84
3245 4507 2.295349 GCATCCTCCTGCATGGTTAATG 59.705 50.000 0.00 0.00 41.87 1.90
3282 4544 3.175438 AGCATAAGTTTGGGCCTTCTT 57.825 42.857 4.53 9.18 0.00 2.52
3711 5093 2.484889 ACGGAAGAAGCTTCTGAACAC 58.515 47.619 29.09 16.71 37.65 3.32
3921 5312 7.680442 TGCAGCACAGTAAAAGTGATTATTA 57.320 32.000 0.00 0.00 39.30 0.98
4455 5849 2.079158 TGAAGCAAAGATCGGCAAGAG 58.921 47.619 9.23 0.00 0.00 2.85
4463 5857 5.509622 GTGTTATTCGCTTGAAGCAAAGATC 59.490 40.000 18.22 2.34 42.58 2.75
4473 5867 3.007074 TGGGTACAGTGTTATTCGCTTGA 59.993 43.478 0.00 0.00 34.33 3.02
4573 5967 1.384191 AGCCTTGAATTTCCGGGCT 59.616 52.632 19.81 19.81 46.95 5.19
4812 6206 0.032217 CCTCTGAGCCTCTTCCCTCT 60.032 60.000 0.00 0.00 0.00 3.69
4914 6308 7.202640 AGCCTTCCTCCCAGATATAGATAAAT 58.797 38.462 0.00 0.00 0.00 1.40
4922 6316 4.220861 AGTTAGCCTTCCTCCCAGATAT 57.779 45.455 0.00 0.00 0.00 1.63
4923 6317 3.708236 AGTTAGCCTTCCTCCCAGATA 57.292 47.619 0.00 0.00 0.00 1.98
4924 6318 2.507471 CAAGTTAGCCTTCCTCCCAGAT 59.493 50.000 0.00 0.00 0.00 2.90
4925 6319 1.909302 CAAGTTAGCCTTCCTCCCAGA 59.091 52.381 0.00 0.00 0.00 3.86
4926 6320 1.630878 ACAAGTTAGCCTTCCTCCCAG 59.369 52.381 0.00 0.00 0.00 4.45
4927 6321 1.742308 ACAAGTTAGCCTTCCTCCCA 58.258 50.000 0.00 0.00 0.00 4.37
4928 6322 3.994931 TTACAAGTTAGCCTTCCTCCC 57.005 47.619 0.00 0.00 0.00 4.30
4931 6325 5.641155 ACCAAATTACAAGTTAGCCTTCCT 58.359 37.500 0.00 0.00 0.00 3.36
4932 6326 5.977489 ACCAAATTACAAGTTAGCCTTCC 57.023 39.130 0.00 0.00 0.00 3.46
4933 6327 5.633601 GCAACCAAATTACAAGTTAGCCTTC 59.366 40.000 0.00 0.00 0.00 3.46
4935 6329 4.586841 TGCAACCAAATTACAAGTTAGCCT 59.413 37.500 0.00 0.00 0.00 4.58
4936 6330 4.877282 TGCAACCAAATTACAAGTTAGCC 58.123 39.130 0.00 0.00 0.00 3.93
4938 6332 5.242838 TCCCTGCAACCAAATTACAAGTTAG 59.757 40.000 0.00 0.00 0.00 2.34
4939 6333 5.141182 TCCCTGCAACCAAATTACAAGTTA 58.859 37.500 0.00 0.00 0.00 2.24
4940 6334 3.964031 TCCCTGCAACCAAATTACAAGTT 59.036 39.130 0.00 0.00 0.00 2.66
4942 6336 4.381932 GGATCCCTGCAACCAAATTACAAG 60.382 45.833 0.00 0.00 0.00 3.16
4945 6339 3.365472 AGGATCCCTGCAACCAAATTAC 58.635 45.455 8.55 0.00 29.57 1.89
5067 6503 6.515832 CAAAAGCAGGGAAAATTACTGACTT 58.484 36.000 0.00 0.00 34.21 3.01
5081 6517 1.909700 TACAAGGAGCAAAAGCAGGG 58.090 50.000 0.00 0.00 0.00 4.45
5236 6673 1.072348 GCGTCGCGTGTATGTATGTTC 60.072 52.381 5.77 0.00 0.00 3.18
5237 6674 0.918619 GCGTCGCGTGTATGTATGTT 59.081 50.000 5.77 0.00 0.00 2.71
5239 6676 1.122501 GATGCGTCGCGTGTATGTATG 59.877 52.381 18.30 0.00 0.00 2.39
5240 6677 1.405461 GATGCGTCGCGTGTATGTAT 58.595 50.000 18.30 0.00 0.00 2.29
5241 6678 0.593008 GGATGCGTCGCGTGTATGTA 60.593 55.000 18.30 0.00 0.00 2.29
5242 6679 1.876714 GGATGCGTCGCGTGTATGT 60.877 57.895 18.30 0.00 0.00 2.29
5243 6680 2.585869 GGGATGCGTCGCGTGTATG 61.586 63.158 18.30 0.00 0.00 2.39
5244 6681 2.279252 GGGATGCGTCGCGTGTAT 60.279 61.111 18.30 1.36 0.00 2.29
5245 6682 3.445687 AGGGATGCGTCGCGTGTA 61.446 61.111 18.30 0.00 41.79 2.90
5251 6688 3.958147 AACAGGCAGGGATGCGTCG 62.958 63.158 0.00 0.00 35.24 5.12
5252 6689 2.045926 AACAGGCAGGGATGCGTC 60.046 61.111 0.00 0.00 35.24 5.19
5253 6690 2.045926 GAACAGGCAGGGATGCGT 60.046 61.111 0.00 0.00 35.24 5.24
5254 6691 3.197790 CGAACAGGCAGGGATGCG 61.198 66.667 0.00 0.00 35.24 4.73
5255 6692 2.045926 ACGAACAGGCAGGGATGC 60.046 61.111 0.00 0.00 0.00 3.91
5317 6770 8.702163 TCTTCACACACACATTACATATACAG 57.298 34.615 0.00 0.00 0.00 2.74
5318 6771 9.313118 GATCTTCACACACACATTACATATACA 57.687 33.333 0.00 0.00 0.00 2.29
5371 6824 1.159905 TGGCACCAAGGTCCTCCTA 59.840 57.895 0.00 0.00 44.35 2.94
5442 6895 2.753029 GCCTGGTCACCTGCTTCT 59.247 61.111 0.00 0.00 0.00 2.85
5521 6974 5.477984 GCTGGAGACTGAGATCATCTATTCT 59.522 44.000 0.00 0.00 0.00 2.40
5522 6975 5.477984 AGCTGGAGACTGAGATCATCTATTC 59.522 44.000 0.00 0.00 0.00 1.75
5523 6976 5.396485 AGCTGGAGACTGAGATCATCTATT 58.604 41.667 0.00 0.00 0.00 1.73
5524 6977 5.001833 AGCTGGAGACTGAGATCATCTAT 57.998 43.478 0.00 0.00 0.00 1.98
5525 6978 4.397420 GAGCTGGAGACTGAGATCATCTA 58.603 47.826 0.00 0.00 0.00 1.98
5526 6979 3.225104 GAGCTGGAGACTGAGATCATCT 58.775 50.000 0.00 0.00 0.00 2.90
5547 7000 1.117994 TACAGCAGATGGAGAGCAGG 58.882 55.000 0.00 0.00 0.00 4.85
5608 7076 8.446273 CGATGAGAAAGAATGACAACAATACTT 58.554 33.333 0.00 0.00 0.00 2.24
5664 7132 7.858382 CAGCTGTGTTGACTGACTATATACTAC 59.142 40.741 5.25 0.00 33.10 2.73
5666 7134 6.603599 TCAGCTGTGTTGACTGACTATATACT 59.396 38.462 14.67 0.00 35.58 2.12
5783 7255 7.121974 AGTTGTTCATCAAAATAGTGAGACG 57.878 36.000 0.00 0.00 37.81 4.18
5868 7340 3.960102 ACAAAACTCAAGCCCTTCAATCA 59.040 39.130 0.00 0.00 0.00 2.57
5869 7341 4.590850 ACAAAACTCAAGCCCTTCAATC 57.409 40.909 0.00 0.00 0.00 2.67
5870 7342 4.202253 GGAACAAAACTCAAGCCCTTCAAT 60.202 41.667 0.00 0.00 0.00 2.57
5871 7343 3.132111 GGAACAAAACTCAAGCCCTTCAA 59.868 43.478 0.00 0.00 0.00 2.69
5946 7421 4.999950 TCTTTTCATCCTCTTCTTGCAGAC 59.000 41.667 0.00 0.00 0.00 3.51
5947 7422 5.233083 TCTTTTCATCCTCTTCTTGCAGA 57.767 39.130 0.00 0.00 0.00 4.26
5948 7423 5.954296 TTCTTTTCATCCTCTTCTTGCAG 57.046 39.130 0.00 0.00 0.00 4.41
5959 7434 9.874205 TTTCATCCAAACATATTCTTTTCATCC 57.126 29.630 0.00 0.00 0.00 3.51
6026 7502 3.007182 ACAAGTATTTTCGGACGGAGGAA 59.993 43.478 0.00 0.00 0.00 3.36
6028 7504 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
6029 7505 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
6030 7506 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
6031 7507 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
6032 7508 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
6033 7509 7.326063 CCTTTTTGATGACAAGTATTTTCGGAC 59.674 37.037 0.00 0.00 37.32 4.79
6034 7510 7.229707 TCCTTTTTGATGACAAGTATTTTCGGA 59.770 33.333 0.00 0.00 37.32 4.55
6035 7511 7.367285 TCCTTTTTGATGACAAGTATTTTCGG 58.633 34.615 0.00 0.00 37.32 4.30
6036 7512 8.970691 ATCCTTTTTGATGACAAGTATTTTCG 57.029 30.769 0.00 0.00 37.32 3.46
6042 7518 8.802267 CCCTTTTATCCTTTTTGATGACAAGTA 58.198 33.333 0.00 0.00 37.32 2.24
6044 7520 7.099120 CCCCTTTTATCCTTTTTGATGACAAG 58.901 38.462 0.00 0.00 37.32 3.16
6045 7521 6.556874 ACCCCTTTTATCCTTTTTGATGACAA 59.443 34.615 0.00 0.00 0.00 3.18
6046 7522 6.081356 ACCCCTTTTATCCTTTTTGATGACA 58.919 36.000 0.00 0.00 0.00 3.58
6047 7523 6.605471 ACCCCTTTTATCCTTTTTGATGAC 57.395 37.500 0.00 0.00 0.00 3.06
6048 7524 8.343787 AGATACCCCTTTTATCCTTTTTGATGA 58.656 33.333 0.00 0.00 0.00 2.92
6049 7525 8.539117 AGATACCCCTTTTATCCTTTTTGATG 57.461 34.615 0.00 0.00 0.00 3.07
6050 7526 9.868160 CTAGATACCCCTTTTATCCTTTTTGAT 57.132 33.333 0.00 0.00 0.00 2.57
6051 7527 9.064602 TCTAGATACCCCTTTTATCCTTTTTGA 57.935 33.333 0.00 0.00 0.00 2.69
6052 7528 9.121658 GTCTAGATACCCCTTTTATCCTTTTTG 57.878 37.037 0.00 0.00 0.00 2.44
6053 7529 7.991460 CGTCTAGATACCCCTTTTATCCTTTTT 59.009 37.037 0.00 0.00 0.00 1.94
6054 7530 7.126879 ACGTCTAGATACCCCTTTTATCCTTTT 59.873 37.037 0.00 0.00 0.00 2.27
6055 7531 6.614496 ACGTCTAGATACCCCTTTTATCCTTT 59.386 38.462 0.00 0.00 0.00 3.11
6056 7532 6.141790 ACGTCTAGATACCCCTTTTATCCTT 58.858 40.000 0.00 0.00 0.00 3.36
6057 7533 5.713807 ACGTCTAGATACCCCTTTTATCCT 58.286 41.667 0.00 0.00 0.00 3.24
6058 7534 7.715266 ATACGTCTAGATACCCCTTTTATCC 57.285 40.000 0.00 0.00 0.00 2.59
6059 7535 9.993454 AAAATACGTCTAGATACCCCTTTTATC 57.007 33.333 0.00 0.00 0.00 1.75
6062 7538 8.985922 ACTAAAATACGTCTAGATACCCCTTTT 58.014 33.333 0.00 1.58 0.00 2.27
6063 7539 8.544687 ACTAAAATACGTCTAGATACCCCTTT 57.455 34.615 0.00 0.00 0.00 3.11
6064 7540 8.544687 AACTAAAATACGTCTAGATACCCCTT 57.455 34.615 0.00 0.00 0.00 3.95
6065 7541 8.003629 AGAACTAAAATACGTCTAGATACCCCT 58.996 37.037 0.00 0.00 0.00 4.79
6066 7542 8.175925 AGAACTAAAATACGTCTAGATACCCC 57.824 38.462 0.00 0.00 0.00 4.95
6072 7548 9.842775 TGGATCTAGAACTAAAATACGTCTAGA 57.157 33.333 10.27 10.27 38.94 2.43
6073 7549 9.881529 GTGGATCTAGAACTAAAATACGTCTAG 57.118 37.037 0.00 0.00 0.00 2.43
6074 7550 8.844244 GGTGGATCTAGAACTAAAATACGTCTA 58.156 37.037 0.00 0.00 0.00 2.59
6075 7551 7.468357 CGGTGGATCTAGAACTAAAATACGTCT 60.468 40.741 0.00 0.00 0.00 4.18
6076 7552 6.636044 CGGTGGATCTAGAACTAAAATACGTC 59.364 42.308 0.00 0.00 0.00 4.34
6077 7553 6.501781 CGGTGGATCTAGAACTAAAATACGT 58.498 40.000 0.00 0.00 0.00 3.57
6078 7554 5.401674 GCGGTGGATCTAGAACTAAAATACG 59.598 44.000 0.00 0.00 0.00 3.06
6079 7555 5.401674 CGCGGTGGATCTAGAACTAAAATAC 59.598 44.000 0.00 0.00 0.00 1.89
6080 7556 5.300034 TCGCGGTGGATCTAGAACTAAAATA 59.700 40.000 6.13 0.00 0.00 1.40
6081 7557 4.098960 TCGCGGTGGATCTAGAACTAAAAT 59.901 41.667 6.13 0.00 0.00 1.82
6082 7558 3.444742 TCGCGGTGGATCTAGAACTAAAA 59.555 43.478 6.13 0.00 0.00 1.52
6083 7559 3.018856 TCGCGGTGGATCTAGAACTAAA 58.981 45.455 6.13 0.00 0.00 1.85
6084 7560 2.357009 GTCGCGGTGGATCTAGAACTAA 59.643 50.000 6.13 0.00 0.00 2.24
6085 7561 1.945394 GTCGCGGTGGATCTAGAACTA 59.055 52.381 6.13 0.00 0.00 2.24
6086 7562 0.739561 GTCGCGGTGGATCTAGAACT 59.260 55.000 6.13 0.00 0.00 3.01
6087 7563 0.739561 AGTCGCGGTGGATCTAGAAC 59.260 55.000 6.13 0.00 0.00 3.01
6088 7564 1.404391 GAAGTCGCGGTGGATCTAGAA 59.596 52.381 6.13 0.00 0.00 2.10
6089 7565 1.022735 GAAGTCGCGGTGGATCTAGA 58.977 55.000 6.13 0.00 0.00 2.43
6090 7566 1.002251 GAGAAGTCGCGGTGGATCTAG 60.002 57.143 6.13 0.00 0.00 2.43
6091 7567 1.022735 GAGAAGTCGCGGTGGATCTA 58.977 55.000 6.13 0.00 0.00 1.98
6094 7570 0.608640 AAAGAGAAGTCGCGGTGGAT 59.391 50.000 6.13 0.00 0.00 3.41
6104 7580 5.045286 AGCTGGTATGGATGAAAAGAGAAGT 60.045 40.000 0.00 0.00 0.00 3.01
6182 7658 2.768344 CCACCCCATAGACGGGCT 60.768 66.667 0.00 0.00 45.90 5.19
6191 7667 0.183971 TCACGTTCAAACCACCCCAT 59.816 50.000 0.00 0.00 0.00 4.00
6205 7681 1.537562 GGACGAAAACAGGAGTCACGT 60.538 52.381 0.00 0.00 35.49 4.49
6221 7697 3.490759 GCGATGGCTGTGTGGACG 61.491 66.667 0.00 0.00 35.83 4.79
6230 7706 3.859414 GAGAGGCTGGCGATGGCT 61.859 66.667 0.00 1.10 43.15 4.75
6235 7711 2.124109 ATCTCGAGAGGCTGGCGA 60.124 61.111 21.52 0.00 0.00 5.54
6312 7796 2.383855 CTCCAAAAACCACCTCAACCA 58.616 47.619 0.00 0.00 0.00 3.67
6337 7821 2.672961 TGGCTCACCTAGAATTCGTG 57.327 50.000 0.00 2.82 36.63 4.35
6339 7823 4.446371 AGAAATGGCTCACCTAGAATTCG 58.554 43.478 0.00 0.00 36.63 3.34
6366 7850 0.239347 AGCAGAGCACACGAAAATGC 59.761 50.000 0.00 0.00 42.39 3.56
6407 7891 4.563374 CCAAACCTGCCAAAGAAATAAGGG 60.563 45.833 0.00 0.00 0.00 3.95
6412 7896 3.807553 CAACCAAACCTGCCAAAGAAAT 58.192 40.909 0.00 0.00 0.00 2.17
6470 7954 2.110213 GGACGGTGCACTCAACCA 59.890 61.111 17.98 0.00 0.00 3.67
6637 8121 3.127589 CGAACACAATATACCCGCATGA 58.872 45.455 0.00 0.00 0.00 3.07
6738 8222 1.659622 TTTCTCGCGGCGATCTACCA 61.660 55.000 26.60 0.97 34.61 3.25
6741 8225 1.065273 GGTTTCTCGCGGCGATCTA 59.935 57.895 26.60 11.66 34.61 1.98
6745 8229 2.736995 CTTGGTTTCTCGCGGCGA 60.737 61.111 24.84 24.84 0.00 5.54
6779 8263 0.834687 TGGACTTAGAACCCGTGGCT 60.835 55.000 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.