Multiple sequence alignment - TraesCS2D01G231100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G231100 chr2D 100.000 5294 0 0 1 5294 202434991 202440284 0.000000e+00 9777.0
1 TraesCS2D01G231100 chr2D 89.539 564 56 2 4 564 563419318 563418755 0.000000e+00 712.0
2 TraesCS2D01G231100 chr2D 93.994 333 16 3 4504 4833 199294936 199295267 7.920000e-138 501.0
3 TraesCS2D01G231100 chr2D 91.667 72 5 1 585 656 563418703 563418633 1.210000e-16 99.0
4 TraesCS2D01G231100 chr2B 94.631 1788 67 12 2588 4371 379786870 379788632 0.000000e+00 2743.0
5 TraesCS2D01G231100 chr2B 91.630 1816 73 25 721 2488 379784975 379786759 0.000000e+00 2438.0
6 TraesCS2D01G231100 chr2B 86.268 568 73 4 1 564 381522342 381522908 3.500000e-171 612.0
7 TraesCS2D01G231100 chr2B 80.591 474 34 20 4840 5260 379790220 379790688 3.980000e-81 313.0
8 TraesCS2D01G231100 chr2B 98.361 61 1 0 4443 4503 439218782 439218722 2.020000e-19 108.0
9 TraesCS2D01G231100 chr2A 92.627 1709 54 24 651 2318 228853588 228855265 0.000000e+00 2392.0
10 TraesCS2D01G231100 chr2A 94.647 934 27 4 3399 4328 228857206 228858120 0.000000e+00 1426.0
11 TraesCS2D01G231100 chr2A 95.771 804 31 2 2603 3406 228855432 228856232 0.000000e+00 1293.0
12 TraesCS2D01G231100 chr2A 84.232 482 38 17 4840 5294 228859765 228860235 8.140000e-118 435.0
13 TraesCS2D01G231100 chr6D 89.594 567 56 2 1 564 293327781 293327215 0.000000e+00 717.0
14 TraesCS2D01G231100 chr6D 90.909 473 40 1 4 473 134700766 134700294 2.690000e-177 632.0
15 TraesCS2D01G231100 chr6D 90.084 474 43 2 4 473 134295481 134295008 3.500000e-171 612.0
16 TraesCS2D01G231100 chr6D 89.412 85 7 2 581 665 293327167 293327085 7.250000e-19 106.0
17 TraesCS2D01G231100 chr1D 89.716 564 55 2 4 564 488961726 488961163 0.000000e+00 717.0
18 TraesCS2D01G231100 chr1D 89.535 344 26 4 4499 4833 120809559 120809217 1.360000e-115 427.0
19 TraesCS2D01G231100 chr1D 98.361 61 1 0 4444 4504 236444885 236444945 2.020000e-19 108.0
20 TraesCS2D01G231100 chr1D 90.123 81 6 2 585 665 488961111 488961033 2.610000e-18 104.0
21 TraesCS2D01G231100 chr6A 89.803 559 54 2 4 559 417295455 417294897 0.000000e+00 713.0
22 TraesCS2D01G231100 chr6A 98.361 61 1 0 4442 4502 431315657 431315717 2.020000e-19 108.0
23 TraesCS2D01G231100 chr6A 88.462 78 7 2 588 665 417281205 417281130 5.650000e-15 93.5
24 TraesCS2D01G231100 chr4D 88.298 564 63 1 4 564 263954085 263953522 0.000000e+00 673.0
25 TraesCS2D01G231100 chr3A 88.298 564 63 1 4 564 100828110 100827547 0.000000e+00 673.0
26 TraesCS2D01G231100 chr7B 90.828 338 22 4 4504 4833 92558756 92559092 1.350000e-120 444.0
27 TraesCS2D01G231100 chr7B 90.237 338 24 4 4504 4833 76720988 76720652 2.930000e-117 433.0
28 TraesCS2D01G231100 chr4B 90.828 338 22 4 4504 4833 575199453 575199789 1.350000e-120 444.0
29 TraesCS2D01G231100 chr4B 90.533 338 23 4 4504 4833 617097830 617097494 6.290000e-119 438.0
30 TraesCS2D01G231100 chr7A 90.265 339 24 4 4504 4833 228954114 228954452 8.140000e-118 435.0
31 TraesCS2D01G231100 chr7A 98.361 61 1 0 4444 4504 282125363 282125423 2.020000e-19 108.0
32 TraesCS2D01G231100 chr7A 95.522 67 3 0 4438 4504 316720146 316720080 2.020000e-19 108.0
33 TraesCS2D01G231100 chr7A 89.744 78 7 1 581 658 120570390 120570314 1.210000e-16 99.0
34 TraesCS2D01G231100 chr7D 90.000 340 24 8 4504 4833 252028483 252028144 1.050000e-116 431.0
35 TraesCS2D01G231100 chr7D 96.875 64 1 1 4441 4503 252028488 252028425 7.250000e-19 106.0
36 TraesCS2D01G231100 chr5B 90.000 340 24 5 4504 4835 93224965 93225302 1.050000e-116 431.0
37 TraesCS2D01G231100 chr5A 96.825 63 2 0 4439 4501 130657824 130657886 7.250000e-19 106.0
38 TraesCS2D01G231100 chr3D 98.333 60 1 0 4444 4503 368728605 368728546 7.250000e-19 106.0
39 TraesCS2D01G231100 chr1A 95.455 66 3 0 4438 4503 73032644 73032579 7.250000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G231100 chr2D 202434991 202440284 5293 False 9777.000000 9777 100.000000 1 5294 1 chr2D.!!$F2 5293
1 TraesCS2D01G231100 chr2D 563418633 563419318 685 True 405.500000 712 90.603000 4 656 2 chr2D.!!$R1 652
2 TraesCS2D01G231100 chr2B 379784975 379790688 5713 False 1831.333333 2743 88.950667 721 5260 3 chr2B.!!$F2 4539
3 TraesCS2D01G231100 chr2B 381522342 381522908 566 False 612.000000 612 86.268000 1 564 1 chr2B.!!$F1 563
4 TraesCS2D01G231100 chr2A 228853588 228860235 6647 False 1386.500000 2392 91.819250 651 5294 4 chr2A.!!$F1 4643
5 TraesCS2D01G231100 chr6D 293327085 293327781 696 True 411.500000 717 89.503000 1 665 2 chr6D.!!$R3 664
6 TraesCS2D01G231100 chr1D 488961033 488961726 693 True 410.500000 717 89.919500 4 665 2 chr1D.!!$R2 661
7 TraesCS2D01G231100 chr6A 417294897 417295455 558 True 713.000000 713 89.803000 4 559 1 chr6A.!!$R2 555
8 TraesCS2D01G231100 chr4D 263953522 263954085 563 True 673.000000 673 88.298000 4 564 1 chr4D.!!$R1 560
9 TraesCS2D01G231100 chr3A 100827547 100828110 563 True 673.000000 673 88.298000 4 564 1 chr3A.!!$R1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 516 0.033228 GCCTCCGATCAGATGTCCAG 59.967 60.0 0.00 0.0 0.00 3.86 F
698 733 0.188587 ACCAGAGACCTCACCTGTGA 59.811 55.0 0.00 0.0 38.06 3.58 F
1358 1406 0.742505 CCATCTGTTGCGCATTCCAT 59.257 50.0 12.75 0.0 0.00 3.41 F
2003 2077 0.833287 AGTTACCGCTGGATGATGCT 59.167 50.0 1.50 0.0 0.00 3.79 F
3207 3382 0.040067 CGTCTTTTGAAGGGCTGCAC 60.040 55.0 0.50 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1885 1959 0.108138 CAGGAATCTCCACGACCACC 60.108 60.0 0.00 0.00 39.61 4.61 R
2055 2129 0.749649 ATCGCCTCAGACCTCATGAC 59.250 55.0 0.00 0.00 0.00 3.06 R
2750 2925 0.583438 CAGTGTCAAGGCTGAACACG 59.417 55.0 20.47 14.28 38.02 4.49 R
3802 4958 0.248054 CACGACAACACACCACAAGC 60.248 55.0 0.00 0.00 0.00 4.01 R
4975 7366 0.036388 GGTTCATTGTCCTCCTCGCA 60.036 55.0 0.00 0.00 0.00 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 4.227538 CACACACTACGTTAACTCCTCAG 58.772 47.826 3.71 0.00 0.00 3.35
188 189 0.684535 TCACAAGATCAGCCACCGAA 59.315 50.000 0.00 0.00 0.00 4.30
189 190 0.798776 CACAAGATCAGCCACCGAAC 59.201 55.000 0.00 0.00 0.00 3.95
217 218 2.281208 CACCGAGCGGAAAACCCA 60.281 61.111 16.83 0.00 38.96 4.51
238 239 5.306160 CCCATTCATTCCTTTGCTTCCATAT 59.694 40.000 0.00 0.00 0.00 1.78
245 246 4.401022 TCCTTTGCTTCCATATATGCCAG 58.599 43.478 7.24 6.17 0.00 4.85
250 251 3.087031 GCTTCCATATATGCCAGCACAT 58.913 45.455 21.19 0.00 33.76 3.21
260 264 0.602562 GCCAGCACATTAGCACCAAA 59.397 50.000 0.00 0.00 36.85 3.28
284 288 6.109359 ACTATCAAAAGCTTTGCGTATCTCT 58.891 36.000 13.54 0.00 0.00 3.10
327 331 1.639635 GCCCCACCATGACTCCAGAT 61.640 60.000 0.00 0.00 0.00 2.90
328 332 0.182061 CCCCACCATGACTCCAGATG 59.818 60.000 0.00 0.00 0.00 2.90
329 333 0.182061 CCCACCATGACTCCAGATGG 59.818 60.000 0.00 0.00 44.23 3.51
445 449 7.251936 AGATGATCAACATTATCCTCCTCCTA 58.748 38.462 0.00 0.00 39.56 2.94
488 492 1.450312 GCTATCTTGCAGCCCGTGT 60.450 57.895 0.00 0.00 32.68 4.49
512 516 0.033228 GCCTCCGATCAGATGTCCAG 59.967 60.000 0.00 0.00 0.00 3.86
530 534 7.360113 TGTCCAGATTCTATGTTGTATAGCA 57.640 36.000 0.00 0.00 0.00 3.49
542 546 4.949238 TGTTGTATAGCAAGCCACATGAAT 59.051 37.500 0.00 0.00 37.83 2.57
559 563 5.129980 ACATGAATATCTTGCAGGTGAGAGA 59.870 40.000 0.00 0.00 0.00 3.10
583 618 2.353704 CCGCATAGGTCACACTGAGAAA 60.354 50.000 0.00 0.00 34.51 2.52
595 630 7.362401 GGTCACACTGAGAAAAGCATTTGATAT 60.362 37.037 0.00 0.00 39.02 1.63
641 676 0.482446 TGGAGTTCCATGGCCAAACT 59.518 50.000 19.06 19.06 42.01 2.66
652 687 3.170362 CCAAACTGCCTCCTCCCA 58.830 61.111 0.00 0.00 0.00 4.37
698 733 0.188587 ACCAGAGACCTCACCTGTGA 59.811 55.000 0.00 0.00 38.06 3.58
701 736 0.896019 AGAGACCTCACCTGTGACCG 60.896 60.000 0.00 0.00 35.46 4.79
747 782 4.107051 GCATGCAGACGGCCACAC 62.107 66.667 14.21 0.00 43.89 3.82
748 783 3.434319 CATGCAGACGGCCACACC 61.434 66.667 2.24 0.00 43.89 4.16
749 784 4.722700 ATGCAGACGGCCACACCC 62.723 66.667 2.24 0.00 43.89 4.61
751 786 4.722700 GCAGACGGCCACACCCAT 62.723 66.667 2.24 0.00 36.11 4.00
774 809 1.004745 ACCAATCCACCTCACCACATC 59.995 52.381 0.00 0.00 0.00 3.06
805 840 4.068280 TGCAGTCATGTGGCAGTG 57.932 55.556 4.93 0.00 32.95 3.66
806 841 1.601477 TGCAGTCATGTGGCAGTGG 60.601 57.895 4.93 0.00 32.95 4.00
807 842 2.986306 GCAGTCATGTGGCAGTGGC 61.986 63.158 10.30 10.30 40.13 5.01
808 843 1.601477 CAGTCATGTGGCAGTGGCA 60.601 57.895 16.56 16.56 43.71 4.92
888 934 1.976112 GGAACCCTCTCACGCTTCT 59.024 57.895 0.00 0.00 0.00 2.85
1018 1064 1.000896 CCCCCGCCACAGAGAAAAT 60.001 57.895 0.00 0.00 0.00 1.82
1065 1111 2.480555 CGACAAACATCCCTGCGC 59.519 61.111 0.00 0.00 0.00 6.09
1128 1174 2.167861 GCTTCCGCTACTGCTTCCG 61.168 63.158 0.00 0.00 36.97 4.30
1144 1190 2.202362 CGTCTCGTCGCACTCCAG 60.202 66.667 0.00 0.00 0.00 3.86
1235 1281 1.065273 GAATCAGCCTTGGCGCATG 59.935 57.895 10.83 0.00 0.00 4.06
1237 1283 1.252904 AATCAGCCTTGGCGCATGTT 61.253 50.000 10.83 0.00 0.00 2.71
1305 1353 4.314961 GGTCGCATTTCCTCCAAAATTTT 58.685 39.130 0.00 0.00 0.00 1.82
1349 1397 1.919918 GTATTTTGCGCCATCTGTTGC 59.080 47.619 4.18 0.00 0.00 4.17
1354 1402 2.486504 CGCCATCTGTTGCGCATT 59.513 55.556 12.75 0.00 44.64 3.56
1355 1403 1.584483 CGCCATCTGTTGCGCATTC 60.584 57.895 12.75 8.68 44.64 2.67
1356 1404 1.226773 GCCATCTGTTGCGCATTCC 60.227 57.895 12.75 2.64 0.00 3.01
1357 1405 1.936436 GCCATCTGTTGCGCATTCCA 61.936 55.000 12.75 7.90 0.00 3.53
1358 1406 0.742505 CCATCTGTTGCGCATTCCAT 59.257 50.000 12.75 0.00 0.00 3.41
1370 1418 3.699067 CGCATTCCATTTCCATGAGAAC 58.301 45.455 0.00 0.00 32.95 3.01
1414 1462 2.634982 TCTTGGATGTGAAATTGCGC 57.365 45.000 0.00 0.00 0.00 6.09
1638 1686 4.779733 GCCGGTGGAGGAGGAGGA 62.780 72.222 1.90 0.00 0.00 3.71
1639 1687 2.443016 CCGGTGGAGGAGGAGGAG 60.443 72.222 0.00 0.00 0.00 3.69
1640 1688 2.443016 CGGTGGAGGAGGAGGAGG 60.443 72.222 0.00 0.00 0.00 4.30
1642 1690 2.039624 GTGGAGGAGGAGGAGGCA 59.960 66.667 0.00 0.00 0.00 4.75
1643 1691 1.383803 GTGGAGGAGGAGGAGGCAT 60.384 63.158 0.00 0.00 0.00 4.40
1645 1693 1.235696 GGAGGAGGAGGAGGCATCT 59.764 63.158 0.00 0.00 0.00 2.90
1885 1959 2.838386 TCTCGGTATCTTTCGAACGG 57.162 50.000 0.00 0.00 34.87 4.44
1997 2071 3.039011 AGTGGATTAGTTACCGCTGGAT 58.961 45.455 0.00 0.00 43.99 3.41
1998 2072 3.131396 GTGGATTAGTTACCGCTGGATG 58.869 50.000 1.50 0.00 34.33 3.51
1999 2073 3.035363 TGGATTAGTTACCGCTGGATGA 58.965 45.455 1.50 0.00 0.00 2.92
2000 2074 3.646162 TGGATTAGTTACCGCTGGATGAT 59.354 43.478 1.50 0.00 0.00 2.45
2001 2075 3.997021 GGATTAGTTACCGCTGGATGATG 59.003 47.826 1.50 0.00 0.00 3.07
2002 2076 2.526304 TAGTTACCGCTGGATGATGC 57.474 50.000 1.50 0.00 0.00 3.91
2003 2077 0.833287 AGTTACCGCTGGATGATGCT 59.167 50.000 1.50 0.00 0.00 3.79
2055 2129 8.971321 CAAAGTACTCTGGTTTCATGATTTTTG 58.029 33.333 0.00 0.00 0.00 2.44
2085 2169 3.799420 GTCTGAGGCGATGTACTCAAATC 59.201 47.826 0.00 0.00 42.62 2.17
2138 2222 2.981898 ACAAACCCGTCTATTACCTGC 58.018 47.619 0.00 0.00 0.00 4.85
2169 2253 4.810191 ATCTAGACTGGTGAACAAGACC 57.190 45.455 0.00 0.00 0.00 3.85
2221 2305 1.215647 CGGGACTCTTCTTGGACCG 59.784 63.158 0.00 0.00 0.00 4.79
2281 2365 6.479990 CGGACAGAATATTTGCTTGACTATCA 59.520 38.462 0.00 0.00 0.00 2.15
2282 2366 7.172190 CGGACAGAATATTTGCTTGACTATCAT 59.828 37.037 0.00 0.00 0.00 2.45
2283 2367 9.494271 GGACAGAATATTTGCTTGACTATCATA 57.506 33.333 0.00 0.00 0.00 2.15
2348 2432 4.083324 CGGCCTAATAGATTCCGTTACGTA 60.083 45.833 0.00 0.00 35.75 3.57
2352 2436 7.018235 GCCTAATAGATTCCGTTACGTACTAC 58.982 42.308 3.52 0.00 0.00 2.73
2353 2437 7.095017 GCCTAATAGATTCCGTTACGTACTACT 60.095 40.741 3.52 0.00 0.00 2.57
2354 2438 8.439286 CCTAATAGATTCCGTTACGTACTACTC 58.561 40.741 3.52 0.00 0.00 2.59
2355 2439 6.793492 ATAGATTCCGTTACGTACTACTCC 57.207 41.667 3.52 0.00 0.00 3.85
2471 2573 6.644347 AGTGTAAGTAGCAGCAATTCTATGT 58.356 36.000 0.00 0.00 0.00 2.29
2490 2592 9.863650 TTCTATGTAGGATTGCTAAGTACTAGT 57.136 33.333 0.00 0.00 0.00 2.57
2493 2595 7.488187 TGTAGGATTGCTAAGTACTAGTACG 57.512 40.000 23.87 13.25 40.80 3.67
2494 2596 5.435820 AGGATTGCTAAGTACTAGTACGC 57.564 43.478 23.87 21.16 40.80 4.42
2495 2597 4.277921 AGGATTGCTAAGTACTAGTACGCC 59.722 45.833 23.87 15.97 40.80 5.68
2496 2598 4.037208 GGATTGCTAAGTACTAGTACGCCA 59.963 45.833 23.87 15.06 40.80 5.69
2497 2599 5.450965 GGATTGCTAAGTACTAGTACGCCAA 60.451 44.000 23.87 22.41 40.80 4.52
2498 2600 5.389859 TTGCTAAGTACTAGTACGCCAAA 57.610 39.130 23.87 14.50 40.80 3.28
2499 2601 4.737054 TGCTAAGTACTAGTACGCCAAAC 58.263 43.478 23.87 14.41 40.80 2.93
2502 2604 5.809051 GCTAAGTACTAGTACGCCAAACAAT 59.191 40.000 23.87 3.92 40.80 2.71
2503 2605 6.020041 GCTAAGTACTAGTACGCCAAACAATC 60.020 42.308 23.87 6.04 40.80 2.67
2505 2607 5.786311 AGTACTAGTACGCCAAACAATCAA 58.214 37.500 23.87 0.00 40.80 2.57
2506 2608 6.225318 AGTACTAGTACGCCAAACAATCAAA 58.775 36.000 23.87 0.00 40.80 2.69
2507 2609 5.352643 ACTAGTACGCCAAACAATCAAAC 57.647 39.130 0.00 0.00 0.00 2.93
2532 2634 2.742053 CTGACGTCACCCACTTATTTGG 59.258 50.000 15.76 0.00 36.26 3.28
2547 2649 7.041372 CCACTTATTTGGGCTGTATGTATGTAC 60.041 40.741 0.00 0.00 32.35 2.90
2563 2665 6.069994 TGTATGTACTATATCACGGACCCAA 58.930 40.000 0.00 0.00 0.00 4.12
2564 2666 5.723672 ATGTACTATATCACGGACCCAAG 57.276 43.478 0.00 0.00 0.00 3.61
2567 2669 3.858135 ACTATATCACGGACCCAAGGAT 58.142 45.455 0.00 0.00 0.00 3.24
2571 2673 3.560636 ATCACGGACCCAAGGATAAAG 57.439 47.619 0.00 0.00 0.00 1.85
2572 2674 2.542550 TCACGGACCCAAGGATAAAGA 58.457 47.619 0.00 0.00 0.00 2.52
2574 2676 3.007635 CACGGACCCAAGGATAAAGAAC 58.992 50.000 0.00 0.00 0.00 3.01
2575 2677 2.640826 ACGGACCCAAGGATAAAGAACA 59.359 45.455 0.00 0.00 0.00 3.18
2577 2679 3.627577 CGGACCCAAGGATAAAGAACATG 59.372 47.826 0.00 0.00 0.00 3.21
2579 2681 4.640647 GGACCCAAGGATAAAGAACATGAC 59.359 45.833 0.00 0.00 0.00 3.06
2580 2682 5.501156 GACCCAAGGATAAAGAACATGACT 58.499 41.667 0.00 0.00 0.00 3.41
2581 2683 5.256474 ACCCAAGGATAAAGAACATGACTG 58.744 41.667 0.00 0.00 0.00 3.51
2582 2684 5.222130 ACCCAAGGATAAAGAACATGACTGT 60.222 40.000 0.00 0.00 37.12 3.55
2585 2687 7.106239 CCAAGGATAAAGAACATGACTGTACT 58.894 38.462 0.00 0.00 33.36 2.73
2586 2688 7.278868 CCAAGGATAAAGAACATGACTGTACTC 59.721 40.741 0.00 0.00 33.36 2.59
2617 2792 7.743749 ACGAAGGGAGTATATCTGAAGTACTA 58.256 38.462 0.00 0.00 0.00 1.82
2618 2793 7.879160 ACGAAGGGAGTATATCTGAAGTACTAG 59.121 40.741 0.00 0.00 0.00 2.57
2619 2794 7.879160 CGAAGGGAGTATATCTGAAGTACTAGT 59.121 40.741 0.00 0.00 0.00 2.57
2669 2844 5.448632 GGAACTTGTTGTCGTTTCACTGATT 60.449 40.000 0.00 0.00 0.00 2.57
2672 2847 5.123186 ACTTGTTGTCGTTTCACTGATTTGA 59.877 36.000 0.00 0.00 0.00 2.69
2750 2925 3.959991 GACTGGACGCCCCTTCAGC 62.960 68.421 0.00 0.00 35.38 4.26
3122 3297 8.444715 TGTGAAAAAGATGCATTTTGATATTGC 58.555 29.630 0.00 0.00 32.81 3.56
3128 3303 6.430048 GATGCATTTTGATATTGCGTCTTC 57.570 37.500 0.00 0.00 44.91 2.87
3151 3326 3.393800 ACTCTTGATGTTTCGACACCTG 58.606 45.455 0.00 0.00 0.00 4.00
3154 3329 5.047306 ACTCTTGATGTTTCGACACCTGATA 60.047 40.000 0.00 0.00 0.00 2.15
3205 3380 0.889186 TCCGTCTTTTGAAGGGCTGC 60.889 55.000 0.00 0.00 46.11 5.25
3207 3382 0.040067 CGTCTTTTGAAGGGCTGCAC 60.040 55.000 0.50 0.00 0.00 4.57
3252 3427 1.004277 TGGAACCCTGTGGCTAATGTC 59.996 52.381 0.00 0.00 33.59 3.06
3344 3519 3.966543 CCCCCGGTTGCAGAGGTT 61.967 66.667 0.00 0.00 0.00 3.50
3393 3568 4.385825 TCAGAGGAATTTACACGCACTTT 58.614 39.130 0.00 0.00 0.00 2.66
3394 3569 4.213270 TCAGAGGAATTTACACGCACTTTG 59.787 41.667 0.00 0.00 0.00 2.77
3540 4696 2.028476 TCCACAAGGGTAACATCGACAG 60.028 50.000 0.00 0.00 38.11 3.51
3546 4702 1.829222 GGGTAACATCGACAGGGAAGA 59.171 52.381 0.00 0.00 39.74 2.87
3743 4899 3.947196 CTGCCAGGTACATCTATTTTGCA 59.053 43.478 0.00 0.00 0.00 4.08
3744 4900 4.339748 TGCCAGGTACATCTATTTTGCAA 58.660 39.130 0.00 0.00 0.00 4.08
3745 4901 4.157656 TGCCAGGTACATCTATTTTGCAAC 59.842 41.667 0.00 0.00 0.00 4.17
3746 4902 4.440112 GCCAGGTACATCTATTTTGCAACC 60.440 45.833 0.00 0.00 0.00 3.77
3747 4903 4.704540 CCAGGTACATCTATTTTGCAACCA 59.295 41.667 0.00 0.00 0.00 3.67
3748 4904 5.393027 CCAGGTACATCTATTTTGCAACCAC 60.393 44.000 0.00 0.00 0.00 4.16
3749 4905 4.394920 AGGTACATCTATTTTGCAACCACG 59.605 41.667 0.00 0.00 0.00 4.94
3750 4906 4.393680 GGTACATCTATTTTGCAACCACGA 59.606 41.667 0.00 0.00 0.00 4.35
3751 4907 4.685169 ACATCTATTTTGCAACCACGAG 57.315 40.909 0.00 0.00 0.00 4.18
3752 4908 4.072131 ACATCTATTTTGCAACCACGAGT 58.928 39.130 0.00 0.00 0.00 4.18
3753 4909 5.242434 ACATCTATTTTGCAACCACGAGTA 58.758 37.500 0.00 0.00 0.00 2.59
3763 4919 3.746492 GCAACCACGAGTAGATTCTGTTT 59.254 43.478 0.00 0.00 0.00 2.83
3765 4921 4.866508 ACCACGAGTAGATTCTGTTTCA 57.133 40.909 0.00 0.00 0.00 2.69
3767 4923 5.794894 ACCACGAGTAGATTCTGTTTCAAT 58.205 37.500 0.00 0.00 0.00 2.57
3801 4957 2.880890 ACTCAGAACATGGTTTGCTGAC 59.119 45.455 0.00 0.00 32.67 3.51
3802 4958 1.872952 TCAGAACATGGTTTGCTGACG 59.127 47.619 0.00 0.00 31.24 4.35
3804 4960 0.593128 GAACATGGTTTGCTGACGCT 59.407 50.000 0.00 0.00 36.97 5.07
3805 4961 1.001378 GAACATGGTTTGCTGACGCTT 60.001 47.619 0.00 0.00 36.97 4.68
3806 4962 0.311790 ACATGGTTTGCTGACGCTTG 59.688 50.000 0.00 0.00 36.97 4.01
3809 4965 1.008538 GGTTTGCTGACGCTTGTGG 60.009 57.895 0.00 0.00 36.97 4.17
3810 4966 1.724582 GGTTTGCTGACGCTTGTGGT 61.725 55.000 0.00 0.00 36.97 4.16
3827 4987 3.268603 TGTGTTGTCGTGCAGGCG 61.269 61.111 0.35 0.00 0.00 5.52
4022 5182 1.248785 CCGAGAAGAGGGACGTCCAA 61.249 60.000 34.40 0.00 38.24 3.53
4191 5351 2.895424 AAAGGAGTGTGGGGAGGCG 61.895 63.158 0.00 0.00 0.00 5.52
4223 5383 4.411013 GCTCAAAGCCCCTCCATTATAAT 58.589 43.478 0.00 0.00 34.48 1.28
4352 5512 5.011090 TGTATTCTATGCGCTCTGTCTTT 57.989 39.130 9.73 0.00 0.00 2.52
4364 5524 2.210116 TCTGTCTTTTGGTTCACTCGC 58.790 47.619 0.00 0.00 0.00 5.03
4371 5531 0.464036 TTGGTTCACTCGCAGTCACT 59.536 50.000 0.00 0.00 0.00 3.41
4372 5532 0.032130 TGGTTCACTCGCAGTCACTC 59.968 55.000 0.00 0.00 0.00 3.51
4374 5534 1.004277 GTTCACTCGCAGTCACTCGG 61.004 60.000 0.00 0.00 0.00 4.63
4375 5535 1.452953 TTCACTCGCAGTCACTCGGT 61.453 55.000 0.00 0.00 0.00 4.69
4376 5536 1.442857 CACTCGCAGTCACTCGGTC 60.443 63.158 0.00 0.00 0.00 4.79
4377 5537 1.601197 ACTCGCAGTCACTCGGTCT 60.601 57.895 0.00 0.00 0.00 3.85
4378 5538 1.135731 CTCGCAGTCACTCGGTCTC 59.864 63.158 0.00 0.00 0.00 3.36
4379 5539 1.302383 CTCGCAGTCACTCGGTCTCT 61.302 60.000 0.00 0.00 0.00 3.10
4380 5540 1.135731 CGCAGTCACTCGGTCTCTC 59.864 63.158 0.00 0.00 0.00 3.20
4381 5541 1.302383 CGCAGTCACTCGGTCTCTCT 61.302 60.000 0.00 0.00 0.00 3.10
4382 5542 0.885196 GCAGTCACTCGGTCTCTCTT 59.115 55.000 0.00 0.00 0.00 2.85
4383 5543 1.402194 GCAGTCACTCGGTCTCTCTTG 60.402 57.143 0.00 0.00 0.00 3.02
4384 5544 1.883275 CAGTCACTCGGTCTCTCTTGT 59.117 52.381 0.00 0.00 0.00 3.16
4385 5545 1.883275 AGTCACTCGGTCTCTCTTGTG 59.117 52.381 0.00 0.00 0.00 3.33
4386 5546 1.068194 GTCACTCGGTCTCTCTTGTGG 60.068 57.143 0.00 0.00 0.00 4.17
4387 5547 0.962489 CACTCGGTCTCTCTTGTGGT 59.038 55.000 0.00 0.00 0.00 4.16
4388 5548 1.341531 CACTCGGTCTCTCTTGTGGTT 59.658 52.381 0.00 0.00 0.00 3.67
4389 5549 1.614413 ACTCGGTCTCTCTTGTGGTTC 59.386 52.381 0.00 0.00 0.00 3.62
4390 5550 1.613925 CTCGGTCTCTCTTGTGGTTCA 59.386 52.381 0.00 0.00 0.00 3.18
4391 5551 1.613925 TCGGTCTCTCTTGTGGTTCAG 59.386 52.381 0.00 0.00 0.00 3.02
4392 5552 1.341531 CGGTCTCTCTTGTGGTTCAGT 59.658 52.381 0.00 0.00 0.00 3.41
4393 5553 2.608261 CGGTCTCTCTTGTGGTTCAGTC 60.608 54.545 0.00 0.00 0.00 3.51
4394 5554 2.289133 GGTCTCTCTTGTGGTTCAGTCC 60.289 54.545 0.00 0.00 0.00 3.85
4395 5555 1.971357 TCTCTCTTGTGGTTCAGTCCC 59.029 52.381 0.00 0.00 0.00 4.46
4396 5556 1.974236 CTCTCTTGTGGTTCAGTCCCT 59.026 52.381 0.00 0.00 0.00 4.20
4397 5557 1.971357 TCTCTTGTGGTTCAGTCCCTC 59.029 52.381 0.00 0.00 0.00 4.30
4398 5558 1.002544 CTCTTGTGGTTCAGTCCCTCC 59.997 57.143 0.00 0.00 0.00 4.30
4399 5559 1.059913 CTTGTGGTTCAGTCCCTCCT 58.940 55.000 0.00 0.00 0.00 3.69
4400 5560 2.158219 TCTTGTGGTTCAGTCCCTCCTA 60.158 50.000 0.00 0.00 0.00 2.94
4412 5572 0.616111 CCCTCCTAGTCACAGGCAGT 60.616 60.000 0.00 0.00 35.49 4.40
4418 5578 1.899814 CTAGTCACAGGCAGTTACCCA 59.100 52.381 0.00 0.00 0.00 4.51
4442 5610 1.839424 AAAAGTAGTCATGGGCCAGC 58.161 50.000 13.78 4.79 0.00 4.85
4447 5615 1.974236 GTAGTCATGGGCCAGCTATCT 59.026 52.381 13.78 8.40 0.00 1.98
4449 5617 1.055040 GTCATGGGCCAGCTATCTCT 58.945 55.000 13.78 0.00 0.00 3.10
4450 5618 2.158249 AGTCATGGGCCAGCTATCTCTA 60.158 50.000 13.78 0.00 0.00 2.43
4451 5619 2.028567 GTCATGGGCCAGCTATCTCTAC 60.029 54.545 13.78 0.00 0.00 2.59
4452 5620 2.158249 TCATGGGCCAGCTATCTCTACT 60.158 50.000 13.78 0.00 0.00 2.57
4453 5621 2.002505 TGGGCCAGCTATCTCTACTC 57.997 55.000 0.00 0.00 0.00 2.59
4454 5622 1.262417 GGGCCAGCTATCTCTACTCC 58.738 60.000 4.39 0.00 0.00 3.85
4455 5623 1.203125 GGGCCAGCTATCTCTACTCCT 60.203 57.143 4.39 0.00 0.00 3.69
4456 5624 2.041891 GGGCCAGCTATCTCTACTCCTA 59.958 54.545 4.39 0.00 0.00 2.94
4457 5625 3.309556 GGGCCAGCTATCTCTACTCCTAT 60.310 52.174 4.39 0.00 0.00 2.57
4458 5626 4.079672 GGGCCAGCTATCTCTACTCCTATA 60.080 50.000 4.39 0.00 0.00 1.31
4459 5627 5.511363 GGCCAGCTATCTCTACTCCTATAA 58.489 45.833 0.00 0.00 0.00 0.98
4460 5628 5.952947 GGCCAGCTATCTCTACTCCTATAAA 59.047 44.000 0.00 0.00 0.00 1.40
4462 5630 7.363443 GGCCAGCTATCTCTACTCCTATAAAAG 60.363 44.444 0.00 0.00 0.00 2.27
4463 5631 7.394923 GCCAGCTATCTCTACTCCTATAAAAGA 59.605 40.741 0.00 0.00 0.00 2.52
4464 5632 8.736244 CCAGCTATCTCTACTCCTATAAAAGAC 58.264 40.741 0.00 0.00 0.00 3.01
4465 5633 9.515226 CAGCTATCTCTACTCCTATAAAAGACT 57.485 37.037 0.00 0.00 0.00 3.24
4466 5634 9.734984 AGCTATCTCTACTCCTATAAAAGACTC 57.265 37.037 0.00 0.00 0.00 3.36
4467 5635 9.509956 GCTATCTCTACTCCTATAAAAGACTCA 57.490 37.037 0.00 0.00 0.00 3.41
4470 5638 9.930158 ATCTCTACTCCTATAAAAGACTCAGTT 57.070 33.333 0.00 0.00 0.00 3.16
4471 5639 9.179909 TCTCTACTCCTATAAAAGACTCAGTTG 57.820 37.037 0.00 0.00 0.00 3.16
4472 5640 8.294954 TCTACTCCTATAAAAGACTCAGTTGG 57.705 38.462 0.00 0.00 0.00 3.77
4474 5642 6.702329 ACTCCTATAAAAGACTCAGTTGGTG 58.298 40.000 0.00 0.00 0.00 4.17
4476 5644 7.181125 ACTCCTATAAAAGACTCAGTTGGTGAT 59.819 37.037 0.00 0.00 33.51 3.06
4477 5645 7.331026 TCCTATAAAAGACTCAGTTGGTGATG 58.669 38.462 0.00 0.00 33.51 3.07
4478 5646 7.180229 TCCTATAAAAGACTCAGTTGGTGATGA 59.820 37.037 0.00 0.00 33.51 2.92
4480 5648 5.954296 AAAAGACTCAGTTGGTGATGATG 57.046 39.130 0.00 0.00 33.51 3.07
4481 5649 3.623906 AGACTCAGTTGGTGATGATGG 57.376 47.619 0.00 0.00 33.51 3.51
4482 5650 2.909006 AGACTCAGTTGGTGATGATGGT 59.091 45.455 0.00 0.00 33.51 3.55
4483 5651 3.005554 GACTCAGTTGGTGATGATGGTG 58.994 50.000 0.00 0.00 33.51 4.17
4485 5653 2.745821 CTCAGTTGGTGATGATGGTGTG 59.254 50.000 0.00 0.00 33.51 3.82
4486 5654 2.106338 TCAGTTGGTGATGATGGTGTGT 59.894 45.455 0.00 0.00 0.00 3.72
4487 5655 2.485426 CAGTTGGTGATGATGGTGTGTC 59.515 50.000 0.00 0.00 0.00 3.67
4488 5656 2.373169 AGTTGGTGATGATGGTGTGTCT 59.627 45.455 0.00 0.00 0.00 3.41
4489 5657 2.477845 TGGTGATGATGGTGTGTCTG 57.522 50.000 0.00 0.00 0.00 3.51
4490 5658 1.089920 GGTGATGATGGTGTGTCTGC 58.910 55.000 0.00 0.00 0.00 4.26
4491 5659 1.089920 GTGATGATGGTGTGTCTGCC 58.910 55.000 0.00 0.00 0.00 4.85
4495 5663 1.741770 GATGGTGTGTCTGCCGTCC 60.742 63.158 0.00 0.00 35.36 4.79
4496 5664 3.589654 ATGGTGTGTCTGCCGTCCG 62.590 63.158 0.00 0.00 0.00 4.79
4498 5666 2.733593 GTGTGTCTGCCGTCCGTC 60.734 66.667 0.00 0.00 0.00 4.79
4499 5667 3.220658 TGTGTCTGCCGTCCGTCA 61.221 61.111 0.00 0.00 0.00 4.35
4501 5669 1.374252 GTGTCTGCCGTCCGTCATT 60.374 57.895 0.00 0.00 0.00 2.57
4502 5670 0.949105 GTGTCTGCCGTCCGTCATTT 60.949 55.000 0.00 0.00 0.00 2.32
4503 5671 0.250124 TGTCTGCCGTCCGTCATTTT 60.250 50.000 0.00 0.00 0.00 1.82
4504 5672 0.442699 GTCTGCCGTCCGTCATTTTC 59.557 55.000 0.00 0.00 0.00 2.29
4506 5674 0.721718 CTGCCGTCCGTCATTTTCTC 59.278 55.000 0.00 0.00 0.00 2.87
4507 5675 0.320374 TGCCGTCCGTCATTTTCTCT 59.680 50.000 0.00 0.00 0.00 3.10
4508 5676 1.546923 TGCCGTCCGTCATTTTCTCTA 59.453 47.619 0.00 0.00 0.00 2.43
4509 5677 1.925185 GCCGTCCGTCATTTTCTCTAC 59.075 52.381 0.00 0.00 0.00 2.59
4510 5678 2.416972 GCCGTCCGTCATTTTCTCTACT 60.417 50.000 0.00 0.00 0.00 2.57
4511 5679 3.436496 CCGTCCGTCATTTTCTCTACTC 58.564 50.000 0.00 0.00 0.00 2.59
4512 5680 3.436496 CGTCCGTCATTTTCTCTACTCC 58.564 50.000 0.00 0.00 0.00 3.85
4513 5681 3.128938 CGTCCGTCATTTTCTCTACTCCT 59.871 47.826 0.00 0.00 0.00 3.69
4514 5682 4.334759 CGTCCGTCATTTTCTCTACTCCTA 59.665 45.833 0.00 0.00 0.00 2.94
4516 5684 6.624423 CGTCCGTCATTTTCTCTACTCCTAAA 60.624 42.308 0.00 0.00 0.00 1.85
4517 5685 6.752815 GTCCGTCATTTTCTCTACTCCTAAAG 59.247 42.308 0.00 0.00 0.00 1.85
4518 5686 6.662234 TCCGTCATTTTCTCTACTCCTAAAGA 59.338 38.462 0.00 0.00 0.00 2.52
4519 5687 6.752815 CCGTCATTTTCTCTACTCCTAAAGAC 59.247 42.308 0.00 0.00 0.00 3.01
4520 5688 7.363094 CCGTCATTTTCTCTACTCCTAAAGACT 60.363 40.741 0.00 0.00 0.00 3.24
4521 5689 7.698970 CGTCATTTTCTCTACTCCTAAAGACTC 59.301 40.741 0.00 0.00 0.00 3.36
4522 5690 8.524487 GTCATTTTCTCTACTCCTAAAGACTCA 58.476 37.037 0.00 0.00 0.00 3.41
4523 5691 8.744652 TCATTTTCTCTACTCCTAAAGACTCAG 58.255 37.037 0.00 0.00 0.00 3.35
4524 5692 8.527810 CATTTTCTCTACTCCTAAAGACTCAGT 58.472 37.037 0.00 0.00 0.00 3.41
4525 5693 8.480133 TTTTCTCTACTCCTAAAGACTCAGTT 57.520 34.615 0.00 0.00 0.00 3.16
4526 5694 7.455641 TTCTCTACTCCTAAAGACTCAGTTG 57.544 40.000 0.00 0.00 0.00 3.16
4527 5695 5.946972 TCTCTACTCCTAAAGACTCAGTTGG 59.053 44.000 0.00 0.00 0.00 3.77
4528 5696 5.642165 TCTACTCCTAAAGACTCAGTTGGT 58.358 41.667 0.00 0.00 0.00 3.67
4529 5697 4.608948 ACTCCTAAAGACTCAGTTGGTG 57.391 45.455 0.00 0.00 0.00 4.17
4530 5698 4.223953 ACTCCTAAAGACTCAGTTGGTGA 58.776 43.478 0.00 0.00 0.00 4.02
4531 5699 4.841246 ACTCCTAAAGACTCAGTTGGTGAT 59.159 41.667 0.00 0.00 33.51 3.06
4532 5700 5.152623 TCCTAAAGACTCAGTTGGTGATG 57.847 43.478 0.00 0.00 33.51 3.07
4534 5702 5.485353 TCCTAAAGACTCAGTTGGTGATGAT 59.515 40.000 0.00 0.00 33.51 2.45
4535 5703 5.583854 CCTAAAGACTCAGTTGGTGATGATG 59.416 44.000 0.00 0.00 33.51 3.07
4536 5704 2.983229 AGACTCAGTTGGTGATGATGC 58.017 47.619 0.00 0.00 33.51 3.91
4539 5707 2.039480 ACTCAGTTGGTGATGATGCTGT 59.961 45.455 0.00 0.00 33.51 4.40
4540 5708 2.418976 CTCAGTTGGTGATGATGCTGTG 59.581 50.000 0.00 0.00 33.51 3.66
4541 5709 2.156917 CAGTTGGTGATGATGCTGTGT 58.843 47.619 0.00 0.00 0.00 3.72
4542 5710 2.161012 CAGTTGGTGATGATGCTGTGTC 59.839 50.000 0.00 0.00 0.00 3.67
4543 5711 2.039480 AGTTGGTGATGATGCTGTGTCT 59.961 45.455 0.00 0.00 0.00 3.41
4544 5712 2.103537 TGGTGATGATGCTGTGTCTG 57.896 50.000 0.00 0.00 0.00 3.51
4545 5713 0.731417 GGTGATGATGCTGTGTCTGC 59.269 55.000 0.00 0.00 0.00 4.26
4546 5714 0.731417 GTGATGATGCTGTGTCTGCC 59.269 55.000 0.00 0.00 0.00 4.85
4547 5715 0.325602 TGATGATGCTGTGTCTGCCA 59.674 50.000 0.00 0.00 0.00 4.92
4549 5717 1.602851 GATGATGCTGTGTCTGCCATC 59.397 52.381 0.00 0.00 0.00 3.51
4550 5718 0.616891 TGATGCTGTGTCTGCCATCT 59.383 50.000 0.00 0.00 0.00 2.90
4551 5719 1.015109 GATGCTGTGTCTGCCATCTG 58.985 55.000 0.00 0.00 0.00 2.90
4552 5720 0.327259 ATGCTGTGTCTGCCATCTGT 59.673 50.000 0.00 0.00 0.00 3.41
4555 5723 1.678123 GCTGTGTCTGCCATCTGTCAT 60.678 52.381 0.00 0.00 0.00 3.06
4556 5724 2.708051 CTGTGTCTGCCATCTGTCATT 58.292 47.619 0.00 0.00 0.00 2.57
4557 5725 3.079578 CTGTGTCTGCCATCTGTCATTT 58.920 45.455 0.00 0.00 0.00 2.32
4558 5726 3.076621 TGTGTCTGCCATCTGTCATTTC 58.923 45.455 0.00 0.00 0.00 2.17
4560 5728 3.126514 GTGTCTGCCATCTGTCATTTCTG 59.873 47.826 0.00 0.00 0.00 3.02
4561 5729 3.008266 TGTCTGCCATCTGTCATTTCTGA 59.992 43.478 0.00 0.00 0.00 3.27
4577 5745 6.709397 TCATTTCTGACCATTAGATCTGCATC 59.291 38.462 5.18 0.00 0.00 3.91
4579 5747 6.983906 TTCTGACCATTAGATCTGCATCTA 57.016 37.500 5.18 0.00 40.18 1.98
4589 5757 5.411831 AGATCTGCATCTAACAGTTGTGA 57.588 39.130 0.00 0.00 37.63 3.58
4590 5758 5.417811 AGATCTGCATCTAACAGTTGTGAG 58.582 41.667 0.00 0.00 37.63 3.51
4592 5760 3.324846 TCTGCATCTAACAGTTGTGAGGT 59.675 43.478 0.00 0.00 36.50 3.85
4593 5761 4.526650 TCTGCATCTAACAGTTGTGAGGTA 59.473 41.667 0.00 0.00 36.50 3.08
4594 5762 5.011635 TCTGCATCTAACAGTTGTGAGGTAA 59.988 40.000 0.00 0.00 36.50 2.85
4595 5763 5.237815 TGCATCTAACAGTTGTGAGGTAAG 58.762 41.667 0.00 0.00 0.00 2.34
4596 5764 5.221641 TGCATCTAACAGTTGTGAGGTAAGT 60.222 40.000 0.00 0.00 0.00 2.24
4597 5765 5.701290 GCATCTAACAGTTGTGAGGTAAGTT 59.299 40.000 0.00 0.00 0.00 2.66
4599 5767 6.229936 TCTAACAGTTGTGAGGTAAGTTGT 57.770 37.500 0.00 0.00 0.00 3.32
4600 5768 6.046593 TCTAACAGTTGTGAGGTAAGTTGTG 58.953 40.000 0.00 0.00 0.00 3.33
4601 5769 3.541632 ACAGTTGTGAGGTAAGTTGTGG 58.458 45.455 0.00 0.00 0.00 4.17
4602 5770 2.290641 CAGTTGTGAGGTAAGTTGTGGC 59.709 50.000 0.00 0.00 0.00 5.01
4603 5771 2.092646 AGTTGTGAGGTAAGTTGTGGCA 60.093 45.455 0.00 0.00 0.00 4.92
4604 5772 2.884639 GTTGTGAGGTAAGTTGTGGCAT 59.115 45.455 0.00 0.00 0.00 4.40
4606 5774 3.561143 TGTGAGGTAAGTTGTGGCATTT 58.439 40.909 0.00 0.00 0.00 2.32
4608 5776 4.404073 TGTGAGGTAAGTTGTGGCATTTTT 59.596 37.500 0.00 0.00 0.00 1.94
4609 5777 4.744631 GTGAGGTAAGTTGTGGCATTTTTG 59.255 41.667 0.00 0.00 0.00 2.44
4611 5779 5.594725 TGAGGTAAGTTGTGGCATTTTTGTA 59.405 36.000 0.00 0.00 0.00 2.41
4613 5781 6.277605 AGGTAAGTTGTGGCATTTTTGTAAC 58.722 36.000 0.00 0.00 0.00 2.50
4614 5782 5.174216 GGTAAGTTGTGGCATTTTTGTAACG 59.826 40.000 0.00 0.00 0.00 3.18
4615 5783 4.640789 AGTTGTGGCATTTTTGTAACGA 57.359 36.364 0.00 0.00 0.00 3.85
4617 5785 6.320494 AGTTGTGGCATTTTTGTAACGATA 57.680 33.333 0.00 0.00 0.00 2.92
4631 5799 3.171705 CGATAGTCCGCTTCTCTGC 57.828 57.895 0.00 0.00 0.00 4.26
4632 5800 0.665835 CGATAGTCCGCTTCTCTGCT 59.334 55.000 0.00 0.00 0.00 4.24
4633 5801 1.334599 CGATAGTCCGCTTCTCTGCTC 60.335 57.143 0.00 0.00 0.00 4.26
4634 5802 1.000717 GATAGTCCGCTTCTCTGCTCC 60.001 57.143 0.00 0.00 0.00 4.70
4635 5803 0.323451 TAGTCCGCTTCTCTGCTCCA 60.323 55.000 0.00 0.00 0.00 3.86
4636 5804 1.188219 AGTCCGCTTCTCTGCTCCAA 61.188 55.000 0.00 0.00 0.00 3.53
4637 5805 0.107945 GTCCGCTTCTCTGCTCCAAT 60.108 55.000 0.00 0.00 0.00 3.16
4639 5807 1.003580 TCCGCTTCTCTGCTCCAATTT 59.996 47.619 0.00 0.00 0.00 1.82
4640 5808 1.131883 CCGCTTCTCTGCTCCAATTTG 59.868 52.381 0.00 0.00 0.00 2.32
4650 5818 1.456923 GCTCCAATTTGCAGAAAACGC 59.543 47.619 0.00 0.00 0.00 4.84
4652 5820 1.686052 TCCAATTTGCAGAAAACGCCT 59.314 42.857 0.00 0.00 0.00 5.52
4654 5822 3.319405 TCCAATTTGCAGAAAACGCCTTA 59.681 39.130 0.00 0.00 0.00 2.69
4655 5823 4.021544 TCCAATTTGCAGAAAACGCCTTAT 60.022 37.500 0.00 0.00 0.00 1.73
4656 5824 4.690280 CCAATTTGCAGAAAACGCCTTATT 59.310 37.500 0.00 0.00 0.00 1.40
4657 5825 5.866633 CCAATTTGCAGAAAACGCCTTATTA 59.133 36.000 0.00 0.00 0.00 0.98
4659 5827 7.064490 CCAATTTGCAGAAAACGCCTTATTATT 59.936 33.333 0.00 0.00 0.00 1.40
4661 5829 7.954788 TTTGCAGAAAACGCCTTATTATTTT 57.045 28.000 0.00 0.00 0.00 1.82
4662 5830 6.942886 TGCAGAAAACGCCTTATTATTTTG 57.057 33.333 0.00 0.00 0.00 2.44
4663 5831 6.682746 TGCAGAAAACGCCTTATTATTTTGA 58.317 32.000 0.00 0.00 0.00 2.69
4667 5835 8.162245 CAGAAAACGCCTTATTATTTTGAAAGC 58.838 33.333 0.00 0.00 0.00 3.51
4668 5836 6.961359 AAACGCCTTATTATTTTGAAAGCC 57.039 33.333 0.00 0.00 0.00 4.35
4669 5837 5.652994 ACGCCTTATTATTTTGAAAGCCA 57.347 34.783 0.00 0.00 0.00 4.75
4671 5839 6.273071 ACGCCTTATTATTTTGAAAGCCATC 58.727 36.000 0.00 0.00 0.00 3.51
4673 5841 5.991606 GCCTTATTATTTTGAAAGCCATCCC 59.008 40.000 0.00 0.00 0.00 3.85
4674 5842 6.183361 GCCTTATTATTTTGAAAGCCATCCCT 60.183 38.462 0.00 0.00 0.00 4.20
4675 5843 7.436933 CCTTATTATTTTGAAAGCCATCCCTC 58.563 38.462 0.00 0.00 0.00 4.30
4681 5849 1.556911 TGAAAGCCATCCCTCTCTCAC 59.443 52.381 0.00 0.00 0.00 3.51
4682 5850 0.915364 AAAGCCATCCCTCTCTCACC 59.085 55.000 0.00 0.00 0.00 4.02
4683 5851 0.043940 AAGCCATCCCTCTCTCACCT 59.956 55.000 0.00 0.00 0.00 4.00
4684 5852 0.398381 AGCCATCCCTCTCTCACCTC 60.398 60.000 0.00 0.00 0.00 3.85
4685 5853 0.689080 GCCATCCCTCTCTCACCTCA 60.689 60.000 0.00 0.00 0.00 3.86
4687 5855 1.969923 CCATCCCTCTCTCACCTCATC 59.030 57.143 0.00 0.00 0.00 2.92
4688 5856 2.675583 CATCCCTCTCTCACCTCATCA 58.324 52.381 0.00 0.00 0.00 3.07
4689 5857 2.928036 TCCCTCTCTCACCTCATCAA 57.072 50.000 0.00 0.00 0.00 2.57
4692 5860 3.261897 TCCCTCTCTCACCTCATCAAAAC 59.738 47.826 0.00 0.00 0.00 2.43
4693 5861 3.008375 CCCTCTCTCACCTCATCAAAACA 59.992 47.826 0.00 0.00 0.00 2.83
4694 5862 4.252073 CCTCTCTCACCTCATCAAAACAG 58.748 47.826 0.00 0.00 0.00 3.16
4696 5864 2.746362 CTCTCACCTCATCAAAACAGCC 59.254 50.000 0.00 0.00 0.00 4.85
4697 5865 2.373169 TCTCACCTCATCAAAACAGCCT 59.627 45.455 0.00 0.00 0.00 4.58
4700 5868 2.486982 CACCTCATCAAAACAGCCTGAG 59.513 50.000 0.00 0.00 34.48 3.35
4701 5869 2.373169 ACCTCATCAAAACAGCCTGAGA 59.627 45.455 0.00 0.00 36.32 3.27
4704 5872 4.461781 CCTCATCAAAACAGCCTGAGAAAT 59.538 41.667 0.00 0.00 36.32 2.17
4705 5873 5.649395 CCTCATCAAAACAGCCTGAGAAATA 59.351 40.000 0.00 0.00 36.32 1.40
4706 5874 6.320672 CCTCATCAAAACAGCCTGAGAAATAT 59.679 38.462 0.00 0.00 36.32 1.28
4707 5875 7.500227 CCTCATCAAAACAGCCTGAGAAATATA 59.500 37.037 0.00 0.00 36.32 0.86
4708 5876 8.985315 TCATCAAAACAGCCTGAGAAATATAT 57.015 30.769 0.00 0.00 0.00 0.86
4709 5877 9.412460 TCATCAAAACAGCCTGAGAAATATATT 57.588 29.630 0.00 0.00 0.00 1.28
4717 5885 9.905713 ACAGCCTGAGAAATATATTTTAAGTGA 57.094 29.630 11.92 0.00 0.00 3.41
4788 5956 9.535878 TGTTTTCTTTCAAGTTTGTTAACAAGT 57.464 25.926 19.72 9.82 37.15 3.16
4809 5977 9.886132 ACAAGTATTATTCTACTTTGAATCCGT 57.114 29.630 0.00 0.00 39.37 4.69
4812 5980 8.827677 AGTATTATTCTACTTTGAATCCGTTGC 58.172 33.333 0.00 0.00 37.73 4.17
4813 5981 7.624360 ATTATTCTACTTTGAATCCGTTGCA 57.376 32.000 0.00 0.00 37.73 4.08
4814 5982 5.957842 ATTCTACTTTGAATCCGTTGCAA 57.042 34.783 0.00 0.00 31.72 4.08
4815 5983 4.742438 TCTACTTTGAATCCGTTGCAAC 57.258 40.909 19.89 19.89 0.00 4.17
4817 5985 8.952992 ATTCTACTTTGAATCCGTTGCAACGC 62.953 42.308 39.42 27.79 37.57 4.84
4824 5992 4.340019 CGTTGCAACGCATGGGCA 62.340 61.111 35.89 0.00 46.06 5.36
4826 5994 4.340019 TTGCAACGCATGGGCACG 62.340 61.111 10.10 0.00 38.76 5.34
4833 6001 2.685829 CGCATGGGCACGTTGCTAA 61.686 57.895 11.40 0.00 44.28 3.09
4834 6002 1.809207 GCATGGGCACGTTGCTAAT 59.191 52.632 6.45 0.00 44.28 1.73
4836 6004 1.912001 CATGGGCACGTTGCTAATTG 58.088 50.000 9.31 1.26 44.28 2.32
4837 6005 0.817013 ATGGGCACGTTGCTAATTGG 59.183 50.000 9.31 0.00 44.28 3.16
4838 6006 0.250945 TGGGCACGTTGCTAATTGGA 60.251 50.000 9.31 0.00 44.28 3.53
4846 7236 5.625311 GCACGTTGCTAATTGGATTATAAGC 59.375 40.000 0.00 0.00 40.96 3.09
4851 7241 5.865085 TGCTAATTGGATTATAAGCTCGGT 58.135 37.500 0.02 0.00 0.00 4.69
4853 7243 5.701290 GCTAATTGGATTATAAGCTCGGTGT 59.299 40.000 0.02 0.00 0.00 4.16
4914 7304 5.180492 CCAACTATTAAAACGAAGAGTGGCA 59.820 40.000 0.00 0.00 31.42 4.92
4917 7307 8.447833 CAACTATTAAAACGAAGAGTGGCATTA 58.552 33.333 0.00 0.00 31.42 1.90
4975 7366 8.899887 TTAAGGAAAATGAGGGATTTCATCTT 57.100 30.769 0.00 0.00 36.81 2.40
4986 7377 2.386661 TTTCATCTTGCGAGGAGGAC 57.613 50.000 0.00 0.00 30.83 3.85
4987 7378 1.266178 TTCATCTTGCGAGGAGGACA 58.734 50.000 0.00 0.00 30.83 4.02
4988 7379 1.266178 TCATCTTGCGAGGAGGACAA 58.734 50.000 0.00 0.00 0.00 3.18
4989 7380 1.833630 TCATCTTGCGAGGAGGACAAT 59.166 47.619 0.00 0.00 0.00 2.71
4990 7381 1.938577 CATCTTGCGAGGAGGACAATG 59.061 52.381 0.00 0.00 0.00 2.82
4993 7384 1.734465 CTTGCGAGGAGGACAATGAAC 59.266 52.381 0.00 0.00 0.00 3.18
4994 7385 0.036388 TGCGAGGAGGACAATGAACC 60.036 55.000 0.00 0.00 0.00 3.62
4996 7387 1.407437 GCGAGGAGGACAATGAACCAT 60.407 52.381 0.00 0.00 0.00 3.55
4997 7388 2.555199 CGAGGAGGACAATGAACCATC 58.445 52.381 0.00 0.00 0.00 3.51
4999 7390 2.239654 GAGGAGGACAATGAACCATCCA 59.760 50.000 14.95 0.00 33.33 3.41
5000 7391 2.649312 AGGAGGACAATGAACCATCCAA 59.351 45.455 14.95 0.00 33.33 3.53
5001 7392 3.075882 AGGAGGACAATGAACCATCCAAA 59.924 43.478 14.95 0.00 33.33 3.28
5003 7394 4.098501 GGAGGACAATGAACCATCCAAATC 59.901 45.833 0.00 0.00 33.33 2.17
5004 7395 4.026052 AGGACAATGAACCATCCAAATCC 58.974 43.478 0.00 0.00 33.33 3.01
5005 7396 4.026052 GGACAATGAACCATCCAAATCCT 58.974 43.478 0.00 0.00 0.00 3.24
5006 7397 4.467438 GGACAATGAACCATCCAAATCCTT 59.533 41.667 0.00 0.00 0.00 3.36
5007 7398 5.046376 GGACAATGAACCATCCAAATCCTTT 60.046 40.000 0.00 0.00 0.00 3.11
5012 7432 6.588719 TGAACCATCCAAATCCTTTTACTG 57.411 37.500 0.00 0.00 0.00 2.74
5101 7522 4.269183 ACGATTTTCCTTACCATGCATGA 58.731 39.130 28.31 6.08 0.00 3.07
5102 7523 4.096382 ACGATTTTCCTTACCATGCATGAC 59.904 41.667 28.31 3.76 0.00 3.06
5114 7535 3.344515 CATGCATGACTGGATCCATAGG 58.655 50.000 22.59 6.40 29.89 2.57
5129 7550 5.869649 TCCATAGGATCGTCTGAAAATCA 57.130 39.130 2.63 0.00 0.00 2.57
5141 7585 4.631813 GTCTGAAAATCAGGCGAATAGTGT 59.368 41.667 7.47 0.00 44.39 3.55
5143 7587 3.938963 TGAAAATCAGGCGAATAGTGTCC 59.061 43.478 0.00 0.00 0.00 4.02
5146 7590 5.353394 AAATCAGGCGAATAGTGTCCTAA 57.647 39.130 0.00 0.00 0.00 2.69
5189 7633 2.124320 AACGTTGTGGCCTGCACT 60.124 55.556 3.32 0.00 0.00 4.40
5196 7640 1.526917 GTGGCCTGCACTCACAAGT 60.527 57.895 3.32 0.00 35.60 3.16
5197 7641 1.103398 GTGGCCTGCACTCACAAGTT 61.103 55.000 3.32 0.00 31.71 2.66
5205 7649 5.355350 GCCTGCACTCACAAGTTATTAAGAT 59.645 40.000 0.00 0.00 31.71 2.40
5206 7650 6.127897 GCCTGCACTCACAAGTTATTAAGATT 60.128 38.462 0.00 0.00 31.71 2.40
5256 7700 6.639632 ATCCTATATTTGTGTGCCATCAAC 57.360 37.500 0.00 0.00 0.00 3.18
5260 7704 0.383590 TTTGTGTGCCATCAACACCG 59.616 50.000 4.40 0.00 37.22 4.94
5265 7709 0.887933 GTGCCATCAACACCGGAAAT 59.112 50.000 9.46 0.00 31.67 2.17
5283 7727 7.336176 ACCGGAAATACATTAGAGACCTTTTTC 59.664 37.037 9.46 0.00 0.00 2.29
5284 7728 7.201705 CCGGAAATACATTAGAGACCTTTTTCC 60.202 40.741 0.00 0.00 37.36 3.13
5285 7729 7.553044 CGGAAATACATTAGAGACCTTTTTCCT 59.447 37.037 0.00 0.00 38.15 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 3.049912 GCGTGGAGTTGAAACCATTTTC 58.950 45.455 0.00 0.00 41.49 2.29
217 218 7.310237 GGCATATATGGAAGCAAAGGAATGAAT 60.310 37.037 14.51 0.00 0.00 2.57
238 239 1.064832 TGGTGCTAATGTGCTGGCATA 60.065 47.619 0.00 0.00 37.05 3.14
245 246 4.963276 TGATAGTTTGGTGCTAATGTGC 57.037 40.909 0.00 0.00 0.00 4.57
250 251 6.648879 AAGCTTTTGATAGTTTGGTGCTAA 57.351 33.333 0.00 0.00 0.00 3.09
260 264 6.109359 AGAGATACGCAAAGCTTTTGATAGT 58.891 36.000 9.53 7.82 0.00 2.12
284 288 1.271488 ACCCGAAAACGGCTGGATAAA 60.271 47.619 0.00 0.00 0.00 1.40
365 369 3.123050 GCACAACATTCTTTCCAACACC 58.877 45.455 0.00 0.00 0.00 4.16
431 435 3.142977 TCTGTGGCTAGGAGGAGGATAAT 59.857 47.826 0.00 0.00 0.00 1.28
445 449 2.840038 TCACCATGTTATCTCTGTGGCT 59.160 45.455 0.00 0.00 33.24 4.75
485 489 2.583593 GATCGGAGGCTGCGACAC 60.584 66.667 32.99 24.21 44.37 3.67
488 492 1.829970 ATCTGATCGGAGGCTGCGA 60.830 57.895 32.48 32.48 45.91 5.10
499 503 7.215789 ACAACATAGAATCTGGACATCTGATC 58.784 38.462 0.00 0.00 33.68 2.92
512 516 6.483307 TGTGGCTTGCTATACAACATAGAATC 59.517 38.462 0.00 0.00 33.68 2.52
530 534 3.635373 CCTGCAAGATATTCATGTGGCTT 59.365 43.478 0.00 0.00 34.07 4.35
542 546 2.103771 GGCATCTCTCACCTGCAAGATA 59.896 50.000 0.00 0.00 37.64 1.98
559 563 0.462581 CAGTGTGACCTATGCGGCAT 60.463 55.000 20.57 20.57 35.61 4.40
583 618 2.233271 CCCTCCGCATATCAAATGCTT 58.767 47.619 8.22 0.00 42.50 3.91
601 636 1.375523 CAGGTGTACACTTCGGCCC 60.376 63.158 24.55 7.12 0.00 5.80
641 676 3.992641 TCCGAGTGGGAGGAGGCA 61.993 66.667 0.00 0.00 40.94 4.75
652 687 4.098044 TCTCTAGAATTTTCGCATCCGAGT 59.902 41.667 0.00 0.00 45.35 4.18
701 736 0.315568 CCTATAGCCGTCTGCCTCAC 59.684 60.000 0.00 0.00 42.71 3.51
746 781 1.564348 GAGGTGGATTGGTGTATGGGT 59.436 52.381 0.00 0.00 0.00 4.51
747 782 1.563879 TGAGGTGGATTGGTGTATGGG 59.436 52.381 0.00 0.00 0.00 4.00
748 783 2.643551 GTGAGGTGGATTGGTGTATGG 58.356 52.381 0.00 0.00 0.00 2.74
749 784 2.026356 TGGTGAGGTGGATTGGTGTATG 60.026 50.000 0.00 0.00 0.00 2.39
750 785 2.026262 GTGGTGAGGTGGATTGGTGTAT 60.026 50.000 0.00 0.00 0.00 2.29
751 786 1.349688 GTGGTGAGGTGGATTGGTGTA 59.650 52.381 0.00 0.00 0.00 2.90
885 920 1.277842 TCGTGCTTCTATTGGCCAGAA 59.722 47.619 5.11 5.55 0.00 3.02
888 934 0.323302 TGTCGTGCTTCTATTGGCCA 59.677 50.000 0.00 0.00 0.00 5.36
1018 1064 5.451242 GGCAAATGTGTTTTAACTCCTGTGA 60.451 40.000 0.00 0.00 0.00 3.58
1065 1111 1.885049 TCCCTCCTCCCTCTCAAATG 58.115 55.000 0.00 0.00 0.00 2.32
1128 1174 2.505118 GCTGGAGTGCGACGAGAC 60.505 66.667 0.00 0.00 0.00 3.36
1196 1242 2.299867 CCCCACAAAACCCTGAATTCAG 59.700 50.000 25.75 25.75 43.40 3.02
1305 1353 7.158021 ACTCAAATTCAAACAAAAACCTGTCA 58.842 30.769 0.00 0.00 0.00 3.58
1349 1397 3.699067 GTTCTCATGGAAATGGAATGCG 58.301 45.455 0.00 0.00 35.51 4.73
1350 1398 3.129287 ACGTTCTCATGGAAATGGAATGC 59.871 43.478 0.00 0.00 35.51 3.56
1351 1399 4.970662 ACGTTCTCATGGAAATGGAATG 57.029 40.909 0.00 0.00 35.51 2.67
1352 1400 5.336690 CCAAACGTTCTCATGGAAATGGAAT 60.337 40.000 10.63 0.00 35.51 3.01
1353 1401 4.022416 CCAAACGTTCTCATGGAAATGGAA 60.022 41.667 10.63 0.00 35.51 3.53
1354 1402 3.505680 CCAAACGTTCTCATGGAAATGGA 59.494 43.478 10.63 0.00 35.51 3.41
1355 1403 3.836949 CCAAACGTTCTCATGGAAATGG 58.163 45.455 10.63 2.67 35.51 3.16
1356 1404 3.244976 GCCAAACGTTCTCATGGAAATG 58.755 45.455 18.69 2.03 35.51 2.32
1357 1405 2.095263 CGCCAAACGTTCTCATGGAAAT 60.095 45.455 18.69 0.00 35.51 2.17
1358 1406 1.265635 CGCCAAACGTTCTCATGGAAA 59.734 47.619 18.69 0.00 35.51 3.13
1414 1462 6.165659 ACAAATTTAGACGGATTGTTCTCG 57.834 37.500 0.00 0.00 30.50 4.04
1640 1688 4.110493 GTAGTCCACGGCAGATGC 57.890 61.111 0.00 0.00 41.14 3.91
1836 1910 1.600636 CCAGAGCCCAAGCACGAAA 60.601 57.895 0.00 0.00 43.56 3.46
1885 1959 0.108138 CAGGAATCTCCACGACCACC 60.108 60.000 0.00 0.00 39.61 4.61
1974 2048 2.936498 CCAGCGGTAACTAATCCACTTG 59.064 50.000 0.00 0.00 0.00 3.16
1997 2071 4.080695 AGCTTTAGGACATGAAGAGCATCA 60.081 41.667 0.00 0.00 37.82 3.07
1998 2072 4.450053 AGCTTTAGGACATGAAGAGCATC 58.550 43.478 0.00 0.00 34.15 3.91
1999 2073 4.500499 AGCTTTAGGACATGAAGAGCAT 57.500 40.909 0.00 0.00 37.85 3.79
2000 2074 3.988976 AGCTTTAGGACATGAAGAGCA 57.011 42.857 0.00 0.00 0.00 4.26
2001 2075 4.006319 ACAAGCTTTAGGACATGAAGAGC 58.994 43.478 0.00 0.02 0.00 4.09
2002 2076 4.999950 ACACAAGCTTTAGGACATGAAGAG 59.000 41.667 0.00 0.00 0.00 2.85
2003 2077 4.973168 ACACAAGCTTTAGGACATGAAGA 58.027 39.130 0.00 0.00 0.00 2.87
2055 2129 0.749649 ATCGCCTCAGACCTCATGAC 59.250 55.000 0.00 0.00 0.00 3.06
2065 2141 3.785486 TGATTTGAGTACATCGCCTCAG 58.215 45.455 0.00 0.00 38.81 3.35
2085 2169 6.312918 CCGATCCGACCCATTTACTATATTTG 59.687 42.308 0.00 0.00 0.00 2.32
2138 2222 5.380900 TCACCAGTCTAGATACATGAGGAG 58.619 45.833 0.00 0.00 0.00 3.69
2169 2253 2.758737 AACCTAGACGCCCTCCCG 60.759 66.667 0.00 0.00 0.00 5.14
2221 2305 0.767375 TGGGCCATGATTCTAGCTCC 59.233 55.000 0.00 0.00 0.00 4.70
2385 2470 7.233962 TCTCCGTTTGGTATCCATATAGCTTTA 59.766 37.037 0.00 0.00 37.06 1.85
2387 2472 5.542635 TCTCCGTTTGGTATCCATATAGCTT 59.457 40.000 0.00 0.00 37.06 3.74
2388 2473 5.084519 TCTCCGTTTGGTATCCATATAGCT 58.915 41.667 0.00 0.00 37.06 3.32
2389 2474 5.401531 TCTCCGTTTGGTATCCATATAGC 57.598 43.478 0.00 0.00 36.74 2.97
2390 2475 6.755206 TGTTCTCCGTTTGGTATCCATATAG 58.245 40.000 0.00 0.00 36.30 1.31
2391 2476 6.551975 TCTGTTCTCCGTTTGGTATCCATATA 59.448 38.462 0.00 0.00 36.30 0.86
2393 2478 4.712829 TCTGTTCTCCGTTTGGTATCCATA 59.287 41.667 0.00 0.00 36.30 2.74
2394 2479 3.517901 TCTGTTCTCCGTTTGGTATCCAT 59.482 43.478 0.00 0.00 36.30 3.41
2396 2481 3.604875 TCTGTTCTCCGTTTGGTATCC 57.395 47.619 0.00 0.00 36.30 2.59
2397 2482 4.626172 GTCTTCTGTTCTCCGTTTGGTATC 59.374 45.833 0.00 0.00 36.30 2.24
2398 2483 4.283722 AGTCTTCTGTTCTCCGTTTGGTAT 59.716 41.667 0.00 0.00 36.30 2.73
2399 2484 3.640029 AGTCTTCTGTTCTCCGTTTGGTA 59.360 43.478 0.00 0.00 36.30 3.25
2400 2485 2.434702 AGTCTTCTGTTCTCCGTTTGGT 59.565 45.455 0.00 0.00 36.30 3.67
2471 2573 5.471456 GGCGTACTAGTACTTAGCAATCCTA 59.529 44.000 26.36 0.00 34.04 2.94
2488 2590 4.640789 TTGTTTGATTGTTTGGCGTACT 57.359 36.364 0.00 0.00 0.00 2.73
2489 2591 5.116983 CAGATTGTTTGATTGTTTGGCGTAC 59.883 40.000 0.00 0.00 0.00 3.67
2490 2592 5.009110 TCAGATTGTTTGATTGTTTGGCGTA 59.991 36.000 0.00 0.00 0.00 4.42
2491 2593 4.050553 CAGATTGTTTGATTGTTTGGCGT 58.949 39.130 0.00 0.00 0.00 5.68
2493 2595 4.148696 CGTCAGATTGTTTGATTGTTTGGC 59.851 41.667 0.00 0.00 0.00 4.52
2494 2596 5.280945 ACGTCAGATTGTTTGATTGTTTGG 58.719 37.500 0.00 0.00 0.00 3.28
2495 2597 5.970612 TGACGTCAGATTGTTTGATTGTTTG 59.029 36.000 15.76 0.00 0.00 2.93
2496 2598 5.971202 GTGACGTCAGATTGTTTGATTGTTT 59.029 36.000 20.73 0.00 0.00 2.83
2497 2599 5.505654 GGTGACGTCAGATTGTTTGATTGTT 60.506 40.000 20.73 0.00 0.00 2.83
2498 2600 4.024048 GGTGACGTCAGATTGTTTGATTGT 60.024 41.667 20.73 0.00 0.00 2.71
2499 2601 4.466828 GGTGACGTCAGATTGTTTGATTG 58.533 43.478 20.73 0.00 0.00 2.67
2502 2604 2.158885 TGGGTGACGTCAGATTGTTTGA 60.159 45.455 20.73 0.00 0.00 2.69
2503 2605 2.032030 GTGGGTGACGTCAGATTGTTTG 60.032 50.000 20.73 0.00 0.00 2.93
2505 2607 1.416401 AGTGGGTGACGTCAGATTGTT 59.584 47.619 20.73 0.25 0.00 2.83
2506 2608 1.048601 AGTGGGTGACGTCAGATTGT 58.951 50.000 20.73 0.69 0.00 2.71
2507 2609 2.169832 AAGTGGGTGACGTCAGATTG 57.830 50.000 20.73 0.00 0.00 2.67
2532 2634 7.066645 TCCGTGATATAGTACATACATACAGCC 59.933 40.741 0.00 0.00 0.00 4.85
2535 2637 7.337689 GGGTCCGTGATATAGTACATACATACA 59.662 40.741 0.00 0.00 0.00 2.29
2547 2649 5.995565 TTATCCTTGGGTCCGTGATATAG 57.004 43.478 0.00 0.00 0.00 1.31
2563 2665 7.482169 TGAGTACAGTCATGTTCTTTATCCT 57.518 36.000 0.00 0.00 37.20 3.24
2564 2666 8.136057 CATGAGTACAGTCATGTTCTTTATCC 57.864 38.462 15.87 0.00 46.00 2.59
2575 2677 2.735151 TCGTCCCATGAGTACAGTCAT 58.265 47.619 0.00 0.00 37.68 3.06
2577 2679 2.159226 CCTTCGTCCCATGAGTACAGTC 60.159 54.545 0.00 0.00 0.00 3.51
2579 2681 1.137086 CCCTTCGTCCCATGAGTACAG 59.863 57.143 0.00 0.00 0.00 2.74
2580 2682 1.191535 CCCTTCGTCCCATGAGTACA 58.808 55.000 0.00 0.00 0.00 2.90
2581 2683 1.409427 CTCCCTTCGTCCCATGAGTAC 59.591 57.143 0.00 0.00 0.00 2.73
2582 2684 1.006758 ACTCCCTTCGTCCCATGAGTA 59.993 52.381 0.00 0.00 31.70 2.59
2585 2687 2.471815 ATACTCCCTTCGTCCCATGA 57.528 50.000 0.00 0.00 0.00 3.07
2586 2688 4.081972 CAGATATACTCCCTTCGTCCCATG 60.082 50.000 0.00 0.00 0.00 3.66
2617 2792 4.142816 GCGTGTGATGAAAGATTTGCTACT 60.143 41.667 0.00 0.00 0.00 2.57
2618 2793 4.091424 GCGTGTGATGAAAGATTTGCTAC 58.909 43.478 0.00 0.00 0.00 3.58
2619 2794 3.750652 TGCGTGTGATGAAAGATTTGCTA 59.249 39.130 0.00 0.00 0.00 3.49
2620 2795 2.553602 TGCGTGTGATGAAAGATTTGCT 59.446 40.909 0.00 0.00 0.00 3.91
2656 2831 6.483307 AGAGTGAATTCAAATCAGTGAAACGA 59.517 34.615 10.35 0.00 45.86 3.85
2669 2844 4.143543 TGCACAATCCAGAGTGAATTCAA 58.856 39.130 10.35 0.00 37.97 2.69
2672 2847 3.504906 CACTGCACAATCCAGAGTGAATT 59.495 43.478 1.57 0.00 36.89 2.17
2750 2925 0.583438 CAGTGTCAAGGCTGAACACG 59.417 55.000 20.47 14.28 38.02 4.49
2804 2979 1.822990 CCGTAGTGCTTCTCCACCTTA 59.177 52.381 0.00 0.00 36.38 2.69
3105 3280 5.972973 TGAAGACGCAATATCAAAATGCATC 59.027 36.000 0.00 0.00 40.04 3.91
3122 3297 4.444388 TCGAAACATCAAGAGTTGAAGACG 59.556 41.667 0.00 0.00 43.95 4.18
3128 3303 3.809832 AGGTGTCGAAACATCAAGAGTTG 59.190 43.478 8.27 0.00 39.11 3.16
3154 3329 7.059156 TGGACCAACCAAAAATTCAAATGATT 58.941 30.769 0.00 0.00 46.75 2.57
3170 3345 0.676782 CGGATCAACCTGGACCAACC 60.677 60.000 0.00 0.00 36.31 3.77
3252 3427 2.613977 GGTCCAGATATCCTTGCCATCG 60.614 54.545 0.00 0.00 0.00 3.84
3344 3519 8.856153 ATTACCATATTGCATGTCCGTATTAA 57.144 30.769 0.00 0.00 0.00 1.40
3393 3568 2.733956 AGCCCTGAAACACAAAAGTCA 58.266 42.857 0.00 0.00 0.00 3.41
3394 3569 3.303791 CGTAGCCCTGAAACACAAAAGTC 60.304 47.826 0.00 0.00 0.00 3.01
3540 4696 0.394899 CTTGGGTGCCTGATCTTCCC 60.395 60.000 0.00 0.00 38.68 3.97
3546 4702 2.671070 CGACCTTGGGTGCCTGAT 59.329 61.111 0.00 0.00 35.25 2.90
3568 4724 2.822255 GCCGAGCCATTGCCGTTA 60.822 61.111 0.00 0.00 38.69 3.18
3593 4749 2.892425 GAAGATGTCTGGGGCGCG 60.892 66.667 0.00 0.00 0.00 6.86
3743 4899 5.209818 TGAAACAGAATCTACTCGTGGTT 57.790 39.130 0.00 0.00 0.00 3.67
3744 4900 4.866508 TGAAACAGAATCTACTCGTGGT 57.133 40.909 0.00 0.00 0.00 4.16
3745 4901 6.102663 AGATTGAAACAGAATCTACTCGTGG 58.897 40.000 0.00 0.00 38.20 4.94
3752 4908 7.165460 TGACGGTAGATTGAAACAGAATCTA 57.835 36.000 0.00 0.00 40.09 1.98
3753 4909 6.037786 TGACGGTAGATTGAAACAGAATCT 57.962 37.500 0.00 0.00 41.87 2.40
3763 4919 3.427573 TGAGTTCCTGACGGTAGATTGA 58.572 45.455 0.00 0.00 0.00 2.57
3765 4921 3.698289 TCTGAGTTCCTGACGGTAGATT 58.302 45.455 0.00 0.00 0.00 2.40
3767 4923 2.818432 GTTCTGAGTTCCTGACGGTAGA 59.182 50.000 0.00 0.00 0.00 2.59
3772 4928 2.289072 ACCATGTTCTGAGTTCCTGACG 60.289 50.000 0.00 0.00 0.00 4.35
3773 4929 3.409026 ACCATGTTCTGAGTTCCTGAC 57.591 47.619 0.00 0.00 0.00 3.51
3801 4957 1.011242 CGACAACACACCACAAGCG 60.011 57.895 0.00 0.00 0.00 4.68
3802 4958 0.248054 CACGACAACACACCACAAGC 60.248 55.000 0.00 0.00 0.00 4.01
3804 4960 0.955919 TGCACGACAACACACCACAA 60.956 50.000 0.00 0.00 0.00 3.33
3805 4961 1.365368 CTGCACGACAACACACCACA 61.365 55.000 0.00 0.00 0.00 4.17
3806 4962 1.351707 CTGCACGACAACACACCAC 59.648 57.895 0.00 0.00 0.00 4.16
3809 4965 2.327940 GCCTGCACGACAACACAC 59.672 61.111 0.00 0.00 0.00 3.82
3810 4966 2.987282 ATCGCCTGCACGACAACACA 62.987 55.000 1.07 0.00 46.28 3.72
3989 5149 2.715749 TCTCGGACGGGTACTTGATA 57.284 50.000 0.00 0.00 0.00 2.15
4022 5182 2.042843 ACGAAGGCGAGGAGGGAT 60.043 61.111 0.00 0.00 41.64 3.85
4174 5334 3.322466 CGCCTCCCCACACTCCTT 61.322 66.667 0.00 0.00 0.00 3.36
4191 5351 2.747855 CTTTGAGCCGCTGTCCCC 60.748 66.667 0.00 0.00 0.00 4.81
4223 5383 1.154921 CACACAAATCCCCACCCCA 59.845 57.895 0.00 0.00 0.00 4.96
4328 5488 4.554292 AGACAGAGCGCATAGAATACATG 58.446 43.478 11.47 0.00 0.00 3.21
4352 5512 0.464036 AGTGACTGCGAGTGAACCAA 59.536 50.000 0.00 0.00 0.00 3.67
4364 5524 1.883275 ACAAGAGAGACCGAGTGACTG 59.117 52.381 0.00 0.00 0.00 3.51
4371 5531 1.613925 CTGAACCACAAGAGAGACCGA 59.386 52.381 0.00 0.00 0.00 4.69
4372 5532 1.341531 ACTGAACCACAAGAGAGACCG 59.658 52.381 0.00 0.00 0.00 4.79
4374 5534 2.289133 GGGACTGAACCACAAGAGAGAC 60.289 54.545 0.00 0.00 0.00 3.36
4375 5535 1.971357 GGGACTGAACCACAAGAGAGA 59.029 52.381 0.00 0.00 0.00 3.10
4376 5536 1.974236 AGGGACTGAACCACAAGAGAG 59.026 52.381 0.00 0.00 37.18 3.20
4377 5537 1.971357 GAGGGACTGAACCACAAGAGA 59.029 52.381 0.00 0.00 41.55 3.10
4378 5538 1.002544 GGAGGGACTGAACCACAAGAG 59.997 57.143 0.00 0.00 41.55 2.85
4379 5539 1.056660 GGAGGGACTGAACCACAAGA 58.943 55.000 0.00 0.00 41.55 3.02
4380 5540 1.059913 AGGAGGGACTGAACCACAAG 58.940 55.000 0.00 0.00 41.55 3.16
4381 5541 2.257207 CTAGGAGGGACTGAACCACAA 58.743 52.381 0.00 0.00 41.55 3.33
4382 5542 1.149288 ACTAGGAGGGACTGAACCACA 59.851 52.381 0.00 0.00 41.55 4.17
4383 5543 1.826096 GACTAGGAGGGACTGAACCAC 59.174 57.143 0.00 0.00 41.55 4.16
4384 5544 1.431633 TGACTAGGAGGGACTGAACCA 59.568 52.381 0.00 0.00 41.55 3.67
4385 5545 1.826096 GTGACTAGGAGGGACTGAACC 59.174 57.143 0.00 0.00 41.55 3.62
4386 5546 2.494073 CTGTGACTAGGAGGGACTGAAC 59.506 54.545 0.00 0.00 41.55 3.18
4387 5547 2.557676 CCTGTGACTAGGAGGGACTGAA 60.558 54.545 0.00 0.00 41.55 3.02
4388 5548 1.006043 CCTGTGACTAGGAGGGACTGA 59.994 57.143 0.00 0.00 41.55 3.41
4389 5549 1.479709 CCTGTGACTAGGAGGGACTG 58.520 60.000 0.00 0.00 41.55 3.51
4391 5551 0.614979 TGCCTGTGACTAGGAGGGAC 60.615 60.000 5.45 0.00 40.42 4.46
4392 5552 0.324738 CTGCCTGTGACTAGGAGGGA 60.325 60.000 5.45 0.00 40.42 4.20
4393 5553 0.616111 ACTGCCTGTGACTAGGAGGG 60.616 60.000 5.45 0.00 40.42 4.30
4394 5554 1.270907 AACTGCCTGTGACTAGGAGG 58.729 55.000 5.45 0.00 40.42 4.30
4395 5555 2.166664 GGTAACTGCCTGTGACTAGGAG 59.833 54.545 5.45 0.00 40.42 3.69
4396 5556 2.176889 GGTAACTGCCTGTGACTAGGA 58.823 52.381 5.45 0.00 40.42 2.94
4397 5557 1.207329 GGGTAACTGCCTGTGACTAGG 59.793 57.143 0.00 0.00 40.95 3.02
4398 5558 1.899814 TGGGTAACTGCCTGTGACTAG 59.100 52.381 0.00 0.00 30.60 2.57
4399 5559 2.018355 TGGGTAACTGCCTGTGACTA 57.982 50.000 0.00 0.00 30.60 2.59
4400 5560 1.136828 TTGGGTAACTGCCTGTGACT 58.863 50.000 0.00 0.00 30.60 3.41
4424 5584 0.995024 AGCTGGCCCATGACTACTTT 59.005 50.000 0.00 0.00 0.00 2.66
4434 5600 1.481428 GGAGTAGAGATAGCTGGCCCA 60.481 57.143 0.00 0.00 0.00 5.36
4435 5601 1.203125 AGGAGTAGAGATAGCTGGCCC 60.203 57.143 0.00 0.00 0.00 5.80
4436 5602 2.302587 AGGAGTAGAGATAGCTGGCC 57.697 55.000 0.00 0.00 0.00 5.36
4447 5615 7.894364 ACCAACTGAGTCTTTTATAGGAGTAGA 59.106 37.037 0.00 0.00 0.00 2.59
4449 5617 7.672660 TCACCAACTGAGTCTTTTATAGGAGTA 59.327 37.037 0.00 0.00 0.00 2.59
4450 5618 6.497259 TCACCAACTGAGTCTTTTATAGGAGT 59.503 38.462 0.00 0.00 0.00 3.85
4451 5619 6.936279 TCACCAACTGAGTCTTTTATAGGAG 58.064 40.000 0.00 0.00 0.00 3.69
4452 5620 6.928348 TCACCAACTGAGTCTTTTATAGGA 57.072 37.500 0.00 0.00 0.00 2.94
4453 5621 7.331026 TCATCACCAACTGAGTCTTTTATAGG 58.669 38.462 0.00 0.00 30.20 2.57
4454 5622 8.824781 CATCATCACCAACTGAGTCTTTTATAG 58.175 37.037 0.00 0.00 30.20 1.31
4455 5623 7.770433 CCATCATCACCAACTGAGTCTTTTATA 59.230 37.037 0.00 0.00 30.20 0.98
4456 5624 6.600822 CCATCATCACCAACTGAGTCTTTTAT 59.399 38.462 0.00 0.00 30.20 1.40
4457 5625 5.939883 CCATCATCACCAACTGAGTCTTTTA 59.060 40.000 0.00 0.00 30.20 1.52
4458 5626 4.763793 CCATCATCACCAACTGAGTCTTTT 59.236 41.667 0.00 0.00 30.20 2.27
4459 5627 4.202503 ACCATCATCACCAACTGAGTCTTT 60.203 41.667 0.00 0.00 30.20 2.52
4460 5628 3.328931 ACCATCATCACCAACTGAGTCTT 59.671 43.478 0.00 0.00 30.20 3.01
4462 5630 3.005554 CACCATCATCACCAACTGAGTC 58.994 50.000 0.00 0.00 30.20 3.36
4463 5631 2.373169 ACACCATCATCACCAACTGAGT 59.627 45.455 0.00 0.00 30.20 3.41
4464 5632 2.745821 CACACCATCATCACCAACTGAG 59.254 50.000 0.00 0.00 30.20 3.35
4465 5633 2.106338 ACACACCATCATCACCAACTGA 59.894 45.455 0.00 0.00 0.00 3.41
4466 5634 2.485426 GACACACCATCATCACCAACTG 59.515 50.000 0.00 0.00 0.00 3.16
4467 5635 2.373169 AGACACACCATCATCACCAACT 59.627 45.455 0.00 0.00 0.00 3.16
4468 5636 2.485426 CAGACACACCATCATCACCAAC 59.515 50.000 0.00 0.00 0.00 3.77
4470 5638 1.611410 GCAGACACACCATCATCACCA 60.611 52.381 0.00 0.00 0.00 4.17
4471 5639 1.089920 GCAGACACACCATCATCACC 58.910 55.000 0.00 0.00 0.00 4.02
4472 5640 1.089920 GGCAGACACACCATCATCAC 58.910 55.000 0.00 0.00 0.00 3.06
4474 5642 0.391661 ACGGCAGACACACCATCATC 60.392 55.000 0.00 0.00 0.00 2.92
4476 5644 1.005037 GACGGCAGACACACCATCA 60.005 57.895 0.00 0.00 0.00 3.07
4477 5645 1.741770 GGACGGCAGACACACCATC 60.742 63.158 0.00 0.00 0.00 3.51
4478 5646 2.347490 GGACGGCAGACACACCAT 59.653 61.111 0.00 0.00 0.00 3.55
4480 5648 4.295119 ACGGACGGCAGACACACC 62.295 66.667 0.00 0.00 0.00 4.16
4481 5649 2.733593 GACGGACGGCAGACACAC 60.734 66.667 0.00 0.00 0.00 3.82
4482 5650 2.094757 AATGACGGACGGCAGACACA 62.095 55.000 6.37 0.00 36.12 3.72
4483 5651 0.949105 AAATGACGGACGGCAGACAC 60.949 55.000 6.37 0.00 36.12 3.67
4485 5653 0.442699 GAAAATGACGGACGGCAGAC 59.557 55.000 6.37 0.00 36.12 3.51
4486 5654 0.320374 AGAAAATGACGGACGGCAGA 59.680 50.000 6.37 0.00 36.12 4.26
4487 5655 0.721718 GAGAAAATGACGGACGGCAG 59.278 55.000 6.37 0.00 36.12 4.85
4488 5656 0.320374 AGAGAAAATGACGGACGGCA 59.680 50.000 1.44 1.44 37.65 5.69
4489 5657 1.925185 GTAGAGAAAATGACGGACGGC 59.075 52.381 0.00 0.00 0.00 5.68
4490 5658 3.436496 GAGTAGAGAAAATGACGGACGG 58.564 50.000 0.00 0.00 0.00 4.79
4491 5659 3.128938 AGGAGTAGAGAAAATGACGGACG 59.871 47.826 0.00 0.00 0.00 4.79
4495 5663 7.540299 AGTCTTTAGGAGTAGAGAAAATGACG 58.460 38.462 0.00 0.00 0.00 4.35
4496 5664 8.524487 TGAGTCTTTAGGAGTAGAGAAAATGAC 58.476 37.037 0.00 0.00 0.00 3.06
4498 5666 8.527810 ACTGAGTCTTTAGGAGTAGAGAAAATG 58.472 37.037 0.00 0.00 0.00 2.32
4499 5667 8.658840 ACTGAGTCTTTAGGAGTAGAGAAAAT 57.341 34.615 0.00 0.00 0.00 1.82
4501 5669 7.039644 CCAACTGAGTCTTTAGGAGTAGAGAAA 60.040 40.741 0.00 0.00 0.00 2.52
4502 5670 6.434652 CCAACTGAGTCTTTAGGAGTAGAGAA 59.565 42.308 0.00 0.00 0.00 2.87
4503 5671 5.946972 CCAACTGAGTCTTTAGGAGTAGAGA 59.053 44.000 0.00 0.00 0.00 3.10
4504 5672 5.712917 ACCAACTGAGTCTTTAGGAGTAGAG 59.287 44.000 0.00 0.00 0.00 2.43
4506 5674 5.477291 TCACCAACTGAGTCTTTAGGAGTAG 59.523 44.000 0.00 0.00 0.00 2.57
4507 5675 5.391256 TCACCAACTGAGTCTTTAGGAGTA 58.609 41.667 0.00 0.00 0.00 2.59
4508 5676 4.223953 TCACCAACTGAGTCTTTAGGAGT 58.776 43.478 0.00 0.00 0.00 3.85
4509 5677 4.873746 TCACCAACTGAGTCTTTAGGAG 57.126 45.455 0.00 0.00 0.00 3.69
4510 5678 4.838423 TCATCACCAACTGAGTCTTTAGGA 59.162 41.667 0.00 0.00 30.20 2.94
4511 5679 5.152623 TCATCACCAACTGAGTCTTTAGG 57.847 43.478 0.00 0.00 30.20 2.69
4512 5680 5.064452 GCATCATCACCAACTGAGTCTTTAG 59.936 44.000 0.00 0.00 30.20 1.85
4513 5681 4.937620 GCATCATCACCAACTGAGTCTTTA 59.062 41.667 0.00 0.00 30.20 1.85
4514 5682 3.755378 GCATCATCACCAACTGAGTCTTT 59.245 43.478 0.00 0.00 30.20 2.52
4516 5684 2.570752 AGCATCATCACCAACTGAGTCT 59.429 45.455 0.00 0.00 30.20 3.24
4517 5685 2.676839 CAGCATCATCACCAACTGAGTC 59.323 50.000 0.00 0.00 30.20 3.36
4518 5686 2.039480 ACAGCATCATCACCAACTGAGT 59.961 45.455 0.00 0.00 30.20 3.41
4519 5687 2.418976 CACAGCATCATCACCAACTGAG 59.581 50.000 0.00 0.00 30.20 3.35
4520 5688 2.224597 ACACAGCATCATCACCAACTGA 60.225 45.455 0.00 0.00 0.00 3.41
4521 5689 2.156917 ACACAGCATCATCACCAACTG 58.843 47.619 0.00 0.00 0.00 3.16
4522 5690 2.039480 AGACACAGCATCATCACCAACT 59.961 45.455 0.00 0.00 0.00 3.16
4523 5691 2.161012 CAGACACAGCATCATCACCAAC 59.839 50.000 0.00 0.00 0.00 3.77
4524 5692 2.429478 CAGACACAGCATCATCACCAA 58.571 47.619 0.00 0.00 0.00 3.67
4525 5693 1.947212 GCAGACACAGCATCATCACCA 60.947 52.381 0.00 0.00 0.00 4.17
4526 5694 0.731417 GCAGACACAGCATCATCACC 59.269 55.000 0.00 0.00 0.00 4.02
4527 5695 0.731417 GGCAGACACAGCATCATCAC 59.269 55.000 0.00 0.00 0.00 3.06
4528 5696 0.325602 TGGCAGACACAGCATCATCA 59.674 50.000 0.00 0.00 0.00 3.07
4529 5697 1.602851 GATGGCAGACACAGCATCATC 59.397 52.381 0.00 0.00 0.00 2.92
4530 5698 1.212195 AGATGGCAGACACAGCATCAT 59.788 47.619 0.00 0.00 0.00 2.45
4531 5699 0.616891 AGATGGCAGACACAGCATCA 59.383 50.000 0.00 0.00 0.00 3.07
4532 5700 1.015109 CAGATGGCAGACACAGCATC 58.985 55.000 0.00 0.00 0.00 3.91
4534 5702 0.321034 GACAGATGGCAGACACAGCA 60.321 55.000 0.00 0.00 0.00 4.41
4535 5703 0.321034 TGACAGATGGCAGACACAGC 60.321 55.000 0.00 0.00 0.00 4.40
4536 5704 2.398252 ATGACAGATGGCAGACACAG 57.602 50.000 0.00 0.00 35.91 3.66
4539 5707 3.008266 TCAGAAATGACAGATGGCAGACA 59.992 43.478 0.00 0.00 35.91 3.41
4540 5708 3.373439 GTCAGAAATGACAGATGGCAGAC 59.627 47.826 3.58 0.00 35.91 3.51
4541 5709 3.603532 GTCAGAAATGACAGATGGCAGA 58.396 45.455 3.58 0.00 35.91 4.26
4542 5710 2.681848 GGTCAGAAATGACAGATGGCAG 59.318 50.000 10.29 0.00 40.38 4.85
4543 5711 2.040145 TGGTCAGAAATGACAGATGGCA 59.960 45.455 10.29 0.00 40.38 4.92
4544 5712 2.715046 TGGTCAGAAATGACAGATGGC 58.285 47.619 10.29 0.00 40.38 4.40
4545 5713 6.351711 TCTAATGGTCAGAAATGACAGATGG 58.648 40.000 10.29 0.00 40.38 3.51
4546 5714 7.932491 AGATCTAATGGTCAGAAATGACAGATG 59.068 37.037 10.29 0.00 40.38 2.90
4547 5715 7.932491 CAGATCTAATGGTCAGAAATGACAGAT 59.068 37.037 10.29 9.03 40.38 2.90
4549 5717 6.018098 GCAGATCTAATGGTCAGAAATGACAG 60.018 42.308 10.29 0.00 40.38 3.51
4550 5718 5.819379 GCAGATCTAATGGTCAGAAATGACA 59.181 40.000 10.29 0.00 40.38 3.58
4551 5719 5.819379 TGCAGATCTAATGGTCAGAAATGAC 59.181 40.000 0.00 0.00 38.04 3.06
4552 5720 5.993055 TGCAGATCTAATGGTCAGAAATGA 58.007 37.500 0.00 0.00 0.00 2.57
4555 5723 6.244552 AGATGCAGATCTAATGGTCAGAAA 57.755 37.500 0.00 0.00 37.15 2.52
4556 5724 5.883685 AGATGCAGATCTAATGGTCAGAA 57.116 39.130 0.00 0.00 37.15 3.02
4557 5725 6.983906 TTAGATGCAGATCTAATGGTCAGA 57.016 37.500 5.80 0.00 43.42 3.27
4565 5733 6.935167 TCACAACTGTTAGATGCAGATCTAA 58.065 36.000 5.80 5.80 45.23 2.10
4566 5734 6.406288 CCTCACAACTGTTAGATGCAGATCTA 60.406 42.308 0.00 0.00 39.76 1.98
4567 5735 5.411831 TCACAACTGTTAGATGCAGATCT 57.588 39.130 0.00 0.00 42.03 2.75
4568 5736 4.569966 CCTCACAACTGTTAGATGCAGATC 59.430 45.833 0.00 0.00 37.40 2.75
4569 5737 4.019860 ACCTCACAACTGTTAGATGCAGAT 60.020 41.667 0.00 0.00 37.40 2.90
4570 5738 3.324846 ACCTCACAACTGTTAGATGCAGA 59.675 43.478 0.00 0.00 37.40 4.26
4571 5739 3.668447 ACCTCACAACTGTTAGATGCAG 58.332 45.455 0.00 0.00 39.67 4.41
4572 5740 3.769739 ACCTCACAACTGTTAGATGCA 57.230 42.857 0.00 0.00 0.00 3.96
4573 5741 5.238583 ACTTACCTCACAACTGTTAGATGC 58.761 41.667 0.00 0.00 0.00 3.91
4577 5745 5.236478 CCACAACTTACCTCACAACTGTTAG 59.764 44.000 0.00 0.00 0.00 2.34
4579 5747 3.945285 CCACAACTTACCTCACAACTGTT 59.055 43.478 0.00 0.00 0.00 3.16
4580 5748 3.541632 CCACAACTTACCTCACAACTGT 58.458 45.455 0.00 0.00 0.00 3.55
4581 5749 2.290641 GCCACAACTTACCTCACAACTG 59.709 50.000 0.00 0.00 0.00 3.16
4582 5750 2.092646 TGCCACAACTTACCTCACAACT 60.093 45.455 0.00 0.00 0.00 3.16
4583 5751 2.294074 TGCCACAACTTACCTCACAAC 58.706 47.619 0.00 0.00 0.00 3.32
4584 5752 2.719531 TGCCACAACTTACCTCACAA 57.280 45.000 0.00 0.00 0.00 3.33
4585 5753 2.949177 ATGCCACAACTTACCTCACA 57.051 45.000 0.00 0.00 0.00 3.58
4586 5754 4.584327 AAAATGCCACAACTTACCTCAC 57.416 40.909 0.00 0.00 0.00 3.51
4588 5756 4.944048 ACAAAAATGCCACAACTTACCTC 58.056 39.130 0.00 0.00 0.00 3.85
4589 5757 6.277605 GTTACAAAAATGCCACAACTTACCT 58.722 36.000 0.00 0.00 0.00 3.08
4590 5758 5.174216 CGTTACAAAAATGCCACAACTTACC 59.826 40.000 0.00 0.00 0.00 2.85
4592 5760 6.132791 TCGTTACAAAAATGCCACAACTTA 57.867 33.333 0.00 0.00 0.00 2.24
4593 5761 5.000012 TCGTTACAAAAATGCCACAACTT 58.000 34.783 0.00 0.00 0.00 2.66
4594 5762 4.640789 TCGTTACAAAAATGCCACAACT 57.359 36.364 0.00 0.00 0.00 3.16
4595 5763 6.146898 ACTATCGTTACAAAAATGCCACAAC 58.853 36.000 0.00 0.00 0.00 3.32
4596 5764 6.320494 ACTATCGTTACAAAAATGCCACAA 57.680 33.333 0.00 0.00 0.00 3.33
4597 5765 5.106475 GGACTATCGTTACAAAAATGCCACA 60.106 40.000 0.00 0.00 0.00 4.17
4599 5767 4.093703 CGGACTATCGTTACAAAAATGCCA 59.906 41.667 0.00 0.00 0.00 4.92
4600 5768 4.584394 CGGACTATCGTTACAAAAATGCC 58.416 43.478 0.00 0.00 0.00 4.40
4601 5769 4.026407 GCGGACTATCGTTACAAAAATGC 58.974 43.478 0.00 0.00 0.00 3.56
4602 5770 5.464965 AGCGGACTATCGTTACAAAAATG 57.535 39.130 0.00 0.00 0.00 2.32
4603 5771 5.873164 AGAAGCGGACTATCGTTACAAAAAT 59.127 36.000 0.00 0.00 0.00 1.82
4604 5772 5.232463 AGAAGCGGACTATCGTTACAAAAA 58.768 37.500 0.00 0.00 0.00 1.94
4606 5774 4.157289 AGAGAAGCGGACTATCGTTACAAA 59.843 41.667 0.00 0.00 0.00 2.83
4608 5776 3.064958 CAGAGAAGCGGACTATCGTTACA 59.935 47.826 0.00 0.00 0.00 2.41
4609 5777 3.619729 CAGAGAAGCGGACTATCGTTAC 58.380 50.000 0.00 0.00 0.00 2.50
4611 5779 1.202313 GCAGAGAAGCGGACTATCGTT 60.202 52.381 0.00 0.00 0.00 3.85
4613 5781 0.665835 AGCAGAGAAGCGGACTATCG 59.334 55.000 0.00 0.00 40.15 2.92
4614 5782 1.000717 GGAGCAGAGAAGCGGACTATC 60.001 57.143 0.00 0.00 40.15 2.08
4615 5783 1.036707 GGAGCAGAGAAGCGGACTAT 58.963 55.000 0.00 0.00 40.15 2.12
4617 5785 1.188219 TTGGAGCAGAGAAGCGGACT 61.188 55.000 0.00 0.00 40.15 3.85
4619 5787 0.615331 AATTGGAGCAGAGAAGCGGA 59.385 50.000 0.00 0.00 40.15 5.54
4621 5789 1.467035 GCAAATTGGAGCAGAGAAGCG 60.467 52.381 0.00 0.00 40.15 4.68
4622 5790 1.542915 TGCAAATTGGAGCAGAGAAGC 59.457 47.619 0.00 0.00 35.51 3.86
4631 5799 2.061028 GGCGTTTTCTGCAAATTGGAG 58.939 47.619 8.26 8.26 37.15 3.86
4632 5800 1.686052 AGGCGTTTTCTGCAAATTGGA 59.314 42.857 0.00 0.00 0.00 3.53
4633 5801 2.153366 AGGCGTTTTCTGCAAATTGG 57.847 45.000 0.00 0.00 0.00 3.16
4634 5802 5.844301 AATAAGGCGTTTTCTGCAAATTG 57.156 34.783 0.00 0.00 0.00 2.32
4635 5803 8.546597 AAATAATAAGGCGTTTTCTGCAAATT 57.453 26.923 0.00 0.00 0.00 1.82
4636 5804 8.442384 CAAAATAATAAGGCGTTTTCTGCAAAT 58.558 29.630 0.00 0.00 0.00 2.32
4637 5805 7.653713 TCAAAATAATAAGGCGTTTTCTGCAAA 59.346 29.630 0.00 0.00 0.00 3.68
4639 5807 6.682746 TCAAAATAATAAGGCGTTTTCTGCA 58.317 32.000 0.00 0.00 0.00 4.41
4640 5808 7.575332 TTCAAAATAATAAGGCGTTTTCTGC 57.425 32.000 0.00 0.00 0.00 4.26
4643 5811 7.117092 TGGCTTTCAAAATAATAAGGCGTTTTC 59.883 33.333 0.00 0.00 43.67 2.29
4646 5814 6.031751 TGGCTTTCAAAATAATAAGGCGTT 57.968 33.333 0.00 0.00 43.67 4.84
4648 5816 5.691754 GGATGGCTTTCAAAATAATAAGGCG 59.308 40.000 0.00 0.00 43.67 5.52
4650 5818 7.288621 AGAGGGATGGCTTTCAAAATAATAAGG 59.711 37.037 0.00 0.00 0.00 2.69
4652 5820 8.061304 AGAGAGGGATGGCTTTCAAAATAATAA 58.939 33.333 0.00 0.00 0.00 1.40
4654 5822 6.438620 AGAGAGGGATGGCTTTCAAAATAAT 58.561 36.000 0.00 0.00 0.00 1.28
4655 5823 5.831103 AGAGAGGGATGGCTTTCAAAATAA 58.169 37.500 0.00 0.00 0.00 1.40
4656 5824 5.044919 TGAGAGAGGGATGGCTTTCAAAATA 60.045 40.000 0.00 0.00 0.00 1.40
4657 5825 4.264083 TGAGAGAGGGATGGCTTTCAAAAT 60.264 41.667 0.00 0.00 0.00 1.82
4659 5827 2.644299 TGAGAGAGGGATGGCTTTCAAA 59.356 45.455 0.00 0.00 0.00 2.69
4661 5829 1.556911 GTGAGAGAGGGATGGCTTTCA 59.443 52.381 0.00 0.00 0.00 2.69
4662 5830 1.134250 GGTGAGAGAGGGATGGCTTTC 60.134 57.143 0.00 0.00 0.00 2.62
4663 5831 0.915364 GGTGAGAGAGGGATGGCTTT 59.085 55.000 0.00 0.00 0.00 3.51
4667 5835 1.969923 GATGAGGTGAGAGAGGGATGG 59.030 57.143 0.00 0.00 0.00 3.51
4668 5836 2.675583 TGATGAGGTGAGAGAGGGATG 58.324 52.381 0.00 0.00 0.00 3.51
4669 5837 3.411454 TTGATGAGGTGAGAGAGGGAT 57.589 47.619 0.00 0.00 0.00 3.85
4671 5839 3.008375 TGTTTTGATGAGGTGAGAGAGGG 59.992 47.826 0.00 0.00 0.00 4.30
4673 5841 3.683822 GCTGTTTTGATGAGGTGAGAGAG 59.316 47.826 0.00 0.00 0.00 3.20
4674 5842 3.557898 GGCTGTTTTGATGAGGTGAGAGA 60.558 47.826 0.00 0.00 0.00 3.10
4675 5843 2.746362 GGCTGTTTTGATGAGGTGAGAG 59.254 50.000 0.00 0.00 0.00 3.20
4681 5849 3.063510 TCTCAGGCTGTTTTGATGAGG 57.936 47.619 15.27 0.00 38.32 3.86
4682 5850 5.640189 ATTTCTCAGGCTGTTTTGATGAG 57.360 39.130 15.27 1.94 38.97 2.90
4683 5851 8.985315 ATATATTTCTCAGGCTGTTTTGATGA 57.015 30.769 15.27 0.51 0.00 2.92
4755 5923 9.710900 AACAAACTTGAAAGAAAACATTCTTCT 57.289 25.926 4.45 0.00 40.14 2.85
4762 5930 9.535878 ACTTGTTAACAAACTTGAAAGAAAACA 57.464 25.926 20.89 0.00 35.15 2.83
4783 5951 9.886132 ACGGATTCAAAGTAGAATAATACTTGT 57.114 29.630 0.22 0.00 43.53 3.16
4786 5954 8.827677 GCAACGGATTCAAAGTAGAATAATACT 58.172 33.333 0.00 0.00 38.30 2.12
4787 5955 8.609176 TGCAACGGATTCAAAGTAGAATAATAC 58.391 33.333 0.00 0.00 38.30 1.89
4788 5956 8.725405 TGCAACGGATTCAAAGTAGAATAATA 57.275 30.769 0.00 0.00 38.30 0.98
4789 5957 7.624360 TGCAACGGATTCAAAGTAGAATAAT 57.376 32.000 0.00 0.00 38.30 1.28
4790 5958 7.302524 GTTGCAACGGATTCAAAGTAGAATAA 58.697 34.615 14.90 0.00 38.30 1.40
4792 5960 5.699839 GTTGCAACGGATTCAAAGTAGAAT 58.300 37.500 14.90 0.00 40.75 2.40
4793 5961 5.103290 GTTGCAACGGATTCAAAGTAGAA 57.897 39.130 14.90 0.00 0.00 2.10
4794 5962 4.742438 GTTGCAACGGATTCAAAGTAGA 57.258 40.909 14.90 0.00 0.00 2.59
4808 5976 2.734346 GTGCCCATGCGTTGCAAC 60.734 61.111 19.89 19.89 43.62 4.17
4809 5977 4.340019 CGTGCCCATGCGTTGCAA 62.340 61.111 0.00 0.00 43.62 4.08
4814 5982 3.892740 TAGCAACGTGCCCATGCGT 62.893 57.895 3.67 0.00 46.52 5.24
4815 5983 1.992233 ATTAGCAACGTGCCCATGCG 61.992 55.000 3.67 0.00 46.52 4.73
4817 5985 1.469595 CCAATTAGCAACGTGCCCATG 60.470 52.381 6.39 0.00 46.52 3.66
4818 5986 0.817013 CCAATTAGCAACGTGCCCAT 59.183 50.000 6.39 0.00 46.52 4.00
4820 5988 1.102978 ATCCAATTAGCAACGTGCCC 58.897 50.000 6.39 0.00 46.52 5.36
4821 5989 2.939460 AATCCAATTAGCAACGTGCC 57.061 45.000 6.39 0.00 46.52 5.01
4823 5991 6.959361 AGCTTATAATCCAATTAGCAACGTG 58.041 36.000 0.00 0.00 34.69 4.49
4824 5992 6.073765 CGAGCTTATAATCCAATTAGCAACGT 60.074 38.462 0.00 0.00 34.69 3.99
4826 5994 6.204882 ACCGAGCTTATAATCCAATTAGCAAC 59.795 38.462 0.00 0.00 34.69 4.17
4827 5995 6.204688 CACCGAGCTTATAATCCAATTAGCAA 59.795 38.462 0.00 0.00 34.69 3.91
4828 5996 5.700832 CACCGAGCTTATAATCCAATTAGCA 59.299 40.000 0.00 0.00 34.69 3.49
4830 5998 7.226720 ACAACACCGAGCTTATAATCCAATTAG 59.773 37.037 0.00 0.00 0.00 1.73
4831 5999 7.011950 CACAACACCGAGCTTATAATCCAATTA 59.988 37.037 0.00 0.00 0.00 1.40
4833 6001 5.296780 CACAACACCGAGCTTATAATCCAAT 59.703 40.000 0.00 0.00 0.00 3.16
4834 6002 4.634004 CACAACACCGAGCTTATAATCCAA 59.366 41.667 0.00 0.00 0.00 3.53
4836 6004 3.002348 GCACAACACCGAGCTTATAATCC 59.998 47.826 0.00 0.00 0.00 3.01
4837 6005 3.871594 AGCACAACACCGAGCTTATAATC 59.128 43.478 0.00 0.00 32.52 1.75
4838 6006 3.873910 AGCACAACACCGAGCTTATAAT 58.126 40.909 0.00 0.00 32.52 1.28
4846 7236 4.406069 CATAAATGAAGCACAACACCGAG 58.594 43.478 0.00 0.00 0.00 4.63
4947 7337 9.538508 GATGAAATCCCTCATTTTCCTTAAATG 57.461 33.333 4.31 4.31 44.47 2.32
4975 7366 0.036388 GGTTCATTGTCCTCCTCGCA 60.036 55.000 0.00 0.00 0.00 5.10
4986 7377 7.546667 CAGTAAAAGGATTTGGATGGTTCATTG 59.453 37.037 0.00 0.00 39.02 2.82
4987 7378 7.614494 CAGTAAAAGGATTTGGATGGTTCATT 58.386 34.615 0.00 0.00 39.02 2.57
4988 7379 6.351286 GCAGTAAAAGGATTTGGATGGTTCAT 60.351 38.462 0.00 0.00 39.02 2.57
4989 7380 5.047377 GCAGTAAAAGGATTTGGATGGTTCA 60.047 40.000 0.00 0.00 39.02 3.18
4990 7381 5.047377 TGCAGTAAAAGGATTTGGATGGTTC 60.047 40.000 0.00 0.00 39.02 3.62
4993 7384 5.404466 TTGCAGTAAAAGGATTTGGATGG 57.596 39.130 0.00 0.00 39.02 3.51
4994 7385 6.458210 AGTTTGCAGTAAAAGGATTTGGATG 58.542 36.000 0.00 0.00 39.02 3.51
4996 7387 7.775053 ATAGTTTGCAGTAAAAGGATTTGGA 57.225 32.000 0.00 0.00 39.02 3.53
5036 7456 6.522054 AGAGTAGTTCCGTCTTCAATTTTGA 58.478 36.000 0.00 0.00 34.92 2.69
5074 7494 4.662145 CATGGTAAGGAAAATCGTTCAGC 58.338 43.478 0.00 0.00 0.00 4.26
5129 7550 6.210784 TGCTATATTTAGGACACTATTCGCCT 59.789 38.462 0.00 0.00 34.56 5.52
5141 7585 6.044287 TCAATTCAGCCCTGCTATATTTAGGA 59.956 38.462 0.00 0.00 36.40 2.94
5143 7587 7.663081 TCTTCAATTCAGCCCTGCTATATTTAG 59.337 37.037 0.00 0.00 36.40 1.85
5146 7590 5.945310 TCTTCAATTCAGCCCTGCTATATT 58.055 37.500 0.00 0.00 36.40 1.28
5256 7700 5.277857 AGGTCTCTAATGTATTTCCGGTG 57.722 43.478 0.00 0.00 0.00 4.94
5260 7704 8.809468 AGGAAAAAGGTCTCTAATGTATTTCC 57.191 34.615 0.00 0.00 42.13 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.