Multiple sequence alignment - TraesCS2D01G230900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G230900 chr2D 100.000 3503 0 0 846 4348 202081195 202077693 0.000000e+00 6469.0
1 TraesCS2D01G230900 chr2D 100.000 3137 0 0 4693 7829 202077348 202074212 0.000000e+00 5794.0
2 TraesCS2D01G230900 chr2D 100.000 368 0 0 1 368 202082040 202081673 0.000000e+00 680.0
3 TraesCS2D01G230900 chr2A 97.441 2462 60 3 846 3305 227632070 227629610 0.000000e+00 4194.0
4 TraesCS2D01G230900 chr2A 95.924 1742 55 11 5768 7499 227627052 227625317 0.000000e+00 2809.0
5 TraesCS2D01G230900 chr2A 96.336 1037 23 8 3322 4347 227629387 227628355 0.000000e+00 1690.0
6 TraesCS2D01G230900 chr2A 92.692 821 41 12 4693 5501 227628343 227627530 0.000000e+00 1166.0
7 TraesCS2D01G230900 chr2A 96.111 360 9 1 9 368 227632510 227632156 4.070000e-162 582.0
8 TraesCS2D01G230900 chr2A 97.464 276 6 1 5498 5772 227627428 227627153 3.310000e-128 470.0
9 TraesCS2D01G230900 chr2A 94.012 167 7 3 7664 7829 227625228 227625064 4.690000e-62 250.0
10 TraesCS2D01G230900 chr2A 95.652 115 5 0 7525 7639 227625320 227625206 1.340000e-42 185.0
11 TraesCS2D01G230900 chr2B 96.308 1977 48 7 846 2806 378991127 378989160 0.000000e+00 3223.0
12 TraesCS2D01G230900 chr2B 96.358 1318 42 4 5843 7156 378986036 378984721 0.000000e+00 2163.0
13 TraesCS2D01G230900 chr2B 97.470 1067 25 2 4783 5848 378987221 378986156 0.000000e+00 1820.0
14 TraesCS2D01G230900 chr2B 91.756 837 28 11 3543 4348 378988178 378987352 0.000000e+00 1125.0
15 TraesCS2D01G230900 chr2B 94.268 663 30 7 7174 7829 378917063 378916402 0.000000e+00 1007.0
16 TraesCS2D01G230900 chr2B 93.814 388 13 6 2818 3198 378988815 378988432 2.450000e-159 573.0
17 TraesCS2D01G230900 chr2B 94.150 359 11 7 14 368 378991575 378991223 8.940000e-149 538.0
18 TraesCS2D01G230900 chr2B 84.264 197 20 1 3322 3518 378988356 378988171 1.740000e-41 182.0
19 TraesCS2D01G230900 chr5D 89.286 56 4 2 7717 7770 214596965 214597020 1.410000e-07 69.4
20 TraesCS2D01G230900 chr1B 100.000 29 0 0 4148 4176 415242562 415242534 4.000000e-03 54.7
21 TraesCS2D01G230900 chr1D 100.000 28 0 0 7794 7821 439828133 439828106 1.400000e-02 52.8
22 TraesCS2D01G230900 chr1A 100.000 28 0 0 7794 7821 538143093 538143120 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G230900 chr2D 202074212 202082040 7828 True 4314.333333 6469 100.000000 1 7829 3 chr2D.!!$R1 7828
1 TraesCS2D01G230900 chr2A 227625064 227632510 7446 True 1418.250000 4194 95.704000 9 7829 8 chr2A.!!$R1 7820
2 TraesCS2D01G230900 chr2B 378984721 378991575 6854 True 1374.857143 3223 93.445714 14 7156 7 chr2B.!!$R2 7142
3 TraesCS2D01G230900 chr2B 378916402 378917063 661 True 1007.000000 1007 94.268000 7174 7829 1 chr2B.!!$R1 655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 932 0.895530 ACCGCCAATCTCTCTCGAAA 59.104 50.000 0.00 0.00 0.00 3.46 F
930 933 1.134965 ACCGCCAATCTCTCTCGAAAG 60.135 52.381 0.00 0.00 0.00 2.62 F
931 934 1.135139 CCGCCAATCTCTCTCGAAAGA 59.865 52.381 0.00 0.00 39.12 2.52 F
989 1002 1.374190 CAGCAGGAGCAGGACAAGT 59.626 57.895 0.00 0.00 45.49 3.16 F
2987 3349 2.009774 CCCAAAAGTAGATGGCACTCG 58.990 52.381 0.00 0.00 35.28 4.18 F
3703 4295 0.387565 GAAAAAGGGCGCCACAAGAA 59.612 50.000 30.85 0.00 0.00 2.52 F
4331 4937 0.732538 GCATTGTTGGGTAGCAACGC 60.733 55.000 0.00 0.00 38.96 4.84 F
5016 5661 0.944386 ACGCTAGTTGCAACCAAGTG 59.056 50.000 28.26 28.26 43.06 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2371 2395 0.878961 AGGTGTTGAAGGCGAACGAC 60.879 55.000 0.00 0.0 0.00 4.34 R
2831 3193 2.398498 CGCCATACTGTGCTGTCTATC 58.602 52.381 0.00 0.0 0.00 2.08 R
2860 3222 9.578576 ACATAATACTATACGTCTACCCTGAAA 57.421 33.333 0.00 0.0 0.00 2.69 R
3231 3599 1.528824 CTCAATCATCAGGCCCCGT 59.471 57.895 0.00 0.0 0.00 5.28 R
4908 5553 0.407139 ATCCAAAGGCCAAGAGTGCT 59.593 50.000 5.01 0.0 0.00 4.40 R
5016 5661 1.064685 CCACTGTCCAAATAGGTCCCC 60.065 57.143 0.00 0.0 39.02 4.81 R
5516 6266 4.122776 CAGTCAAGTACACACAGAGCTTT 58.877 43.478 0.00 0.0 0.00 3.51 R
7146 8133 0.035056 ATCCAAGAAGGCCGTTCCAG 60.035 55.000 0.00 0.0 35.51 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
913 916 3.726517 CCTCCAAAGCACGCACCG 61.727 66.667 0.00 0.00 0.00 4.94
929 932 0.895530 ACCGCCAATCTCTCTCGAAA 59.104 50.000 0.00 0.00 0.00 3.46
930 933 1.134965 ACCGCCAATCTCTCTCGAAAG 60.135 52.381 0.00 0.00 0.00 2.62
931 934 1.135139 CCGCCAATCTCTCTCGAAAGA 59.865 52.381 0.00 0.00 39.12 2.52
989 1002 1.374190 CAGCAGGAGCAGGACAAGT 59.626 57.895 0.00 0.00 45.49 3.16
1100 1114 2.360844 CTGTAAGCTCTCGGTCTCTCA 58.639 52.381 0.00 0.00 0.00 3.27
1915 1939 3.000080 GAACCTCAACGTCAGCGCG 62.000 63.158 0.00 0.00 42.83 6.86
2987 3349 2.009774 CCCAAAAGTAGATGGCACTCG 58.990 52.381 0.00 0.00 35.28 4.18
3255 3623 1.074405 GGCCTGATGATTGAGCCCATA 59.926 52.381 0.00 0.00 37.66 2.74
3256 3624 2.157738 GCCTGATGATTGAGCCCATAC 58.842 52.381 0.00 0.00 0.00 2.39
3358 3932 6.502136 AGGCTAAATTGTGAGCTTTTAGAC 57.498 37.500 15.78 13.61 39.98 2.59
3436 4010 3.226346 GCATCATTTCTGAAGCTTGCA 57.774 42.857 2.10 0.64 41.68 4.08
3439 4013 4.630069 GCATCATTTCTGAAGCTTGCAAAT 59.370 37.500 2.10 2.30 41.68 2.32
3460 4034 7.401860 CAAATACACGATTCTGGTAACTCATG 58.598 38.462 0.00 0.00 37.61 3.07
3462 4036 3.261580 CACGATTCTGGTAACTCATGCA 58.738 45.455 0.00 0.00 37.61 3.96
3511 4085 6.731467 ACTTATGGATGATGTTTTGGTACCT 58.269 36.000 14.36 0.00 0.00 3.08
3538 4112 4.574828 GCCCGCTCTTTTTAATATCACTCA 59.425 41.667 0.00 0.00 0.00 3.41
3618 4198 1.342074 AGTACTCTGCCAAGTCTGCA 58.658 50.000 0.00 0.00 37.17 4.41
3703 4295 0.387565 GAAAAAGGGCGCCACAAGAA 59.612 50.000 30.85 0.00 0.00 2.52
3766 4359 4.190772 ACGATATGTTCACATCACATGCA 58.809 39.130 0.00 0.00 35.57 3.96
3768 4361 5.202640 CGATATGTTCACATCACATGCAAG 58.797 41.667 0.00 0.00 35.57 4.01
3770 4363 1.270274 TGTTCACATCACATGCAAGGC 59.730 47.619 0.00 0.00 0.00 4.35
3844 4442 3.328931 TCTCATTCTTCTCACCAGGCTTT 59.671 43.478 0.00 0.00 0.00 3.51
3845 4443 4.532126 TCTCATTCTTCTCACCAGGCTTTA 59.468 41.667 0.00 0.00 0.00 1.85
3846 4444 5.190528 TCTCATTCTTCTCACCAGGCTTTAT 59.809 40.000 0.00 0.00 0.00 1.40
3847 4445 5.819991 TCATTCTTCTCACCAGGCTTTATT 58.180 37.500 0.00 0.00 0.00 1.40
3912 4510 8.865090 TCTGAAATTCTTGCCCAAGTTTTAATA 58.135 29.630 7.80 0.00 39.38 0.98
4065 4664 5.813672 GTCAAATATGGCTGCATTGAATTGT 59.186 36.000 0.50 0.00 32.36 2.71
4078 4677 5.527951 CATTGAATTGTTCTCCCGTTCAAA 58.472 37.500 3.37 0.00 40.75 2.69
4104 4703 5.234752 ACTTCAAACTGTTGGTGGAAAAAC 58.765 37.500 0.00 0.00 35.29 2.43
4331 4937 0.732538 GCATTGTTGGGTAGCAACGC 60.733 55.000 0.00 0.00 38.96 4.84
4712 5318 3.160679 GGGGCAATATCATACCTTGCT 57.839 47.619 6.47 0.00 43.65 3.91
4713 5319 2.821969 GGGGCAATATCATACCTTGCTG 59.178 50.000 6.47 0.00 43.65 4.41
4714 5320 2.229784 GGGCAATATCATACCTTGCTGC 59.770 50.000 6.47 0.00 43.65 5.25
4715 5321 2.229784 GGCAATATCATACCTTGCTGCC 59.770 50.000 0.00 0.00 43.65 4.85
4716 5322 2.886523 GCAATATCATACCTTGCTGCCA 59.113 45.455 0.00 0.00 41.52 4.92
4718 5324 4.701651 GCAATATCATACCTTGCTGCCATA 59.298 41.667 0.00 0.00 41.52 2.74
4719 5325 5.359009 GCAATATCATACCTTGCTGCCATAT 59.641 40.000 0.00 0.00 41.52 1.78
4720 5326 6.127535 GCAATATCATACCTTGCTGCCATATT 60.128 38.462 0.00 0.00 41.52 1.28
4730 5336 5.503662 TTGCTGCCATATTTGATACAGTG 57.496 39.130 0.00 0.00 0.00 3.66
4754 5360 3.752665 ACTCCTACTCAAAGTCTCGTCA 58.247 45.455 0.00 0.00 0.00 4.35
4766 5372 2.428890 AGTCTCGTCATCATGAACCCTC 59.571 50.000 0.00 0.00 0.00 4.30
4954 5599 4.322198 GGTACCGTTACCATCTCACAAGAA 60.322 45.833 3.97 0.00 46.59 2.52
5009 5654 2.135139 CTGAACTCACGCTAGTTGCAA 58.865 47.619 7.65 0.00 39.78 4.08
5016 5661 0.944386 ACGCTAGTTGCAACCAAGTG 59.056 50.000 28.26 28.26 43.06 3.16
5019 5664 1.247567 CTAGTTGCAACCAAGTGGGG 58.752 55.000 25.62 4.01 42.91 4.96
5776 6633 8.885494 TTCAATTTTGCAGCTTGTACTATTTT 57.115 26.923 0.00 0.00 0.00 1.82
6021 7002 7.881775 TTGACTACTCTTATCAGCTATCACA 57.118 36.000 0.00 0.00 0.00 3.58
6058 7039 4.262335 CCTCAAGGTAGTTAACGGACAAGT 60.262 45.833 13.54 0.00 0.00 3.16
6628 7610 6.666417 CAAATATGGACTGCTTCTAATGCTC 58.334 40.000 0.00 0.00 0.00 4.26
6762 7744 4.446455 GGAAGGGAGAAAGGTTTCTTGTCT 60.446 45.833 6.43 2.85 46.84 3.41
6775 7757 1.760613 TCTTGTCTGTCCTCCGTTTGT 59.239 47.619 0.00 0.00 0.00 2.83
7104 8091 3.363673 CGGTTAAAGAACAAGAAGGACGC 60.364 47.826 0.00 0.00 37.29 5.19
7138 8125 2.041620 TGGATGCAAGTAGGCCTTTCTT 59.958 45.455 12.58 13.89 0.00 2.52
7146 8133 3.010420 AGTAGGCCTTTCTTGAATTCGC 58.990 45.455 12.58 0.00 0.00 4.70
7311 8299 8.630054 ATGGACAAGCATTACACTAGTAAAAA 57.370 30.769 0.00 0.00 43.01 1.94
7354 8347 3.027472 GCCCCATTACCCCACCCT 61.027 66.667 0.00 0.00 0.00 4.34
7477 8471 1.944709 AGAGTTCGAAACCCCAAAACG 59.055 47.619 0.00 0.00 0.00 3.60
7555 8549 0.958876 ATGGTTTTCTCCCGGTTCGC 60.959 55.000 0.00 0.00 0.00 4.70
7655 8649 5.526111 CCTTAAGCGCTAGTATAAAAAGGCA 59.474 40.000 12.05 0.00 0.00 4.75
7677 8671 7.555914 AGGCAAACATTTTTAAGAAACCACATT 59.444 29.630 0.00 0.00 0.00 2.71
7769 8765 6.269769 ACATGGTGTATGGGAAAAAGAAACAT 59.730 34.615 0.00 0.00 41.25 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.358322 ACAACAAGTTCCCCGTGAAT 57.642 45.000 0.00 0.00 34.90 2.57
1 2 1.746220 CAACAACAAGTTCCCCGTGAA 59.254 47.619 0.00 0.00 38.74 3.18
2 3 1.384525 CAACAACAAGTTCCCCGTGA 58.615 50.000 0.00 0.00 38.74 4.35
3 4 0.248866 GCAACAACAAGTTCCCCGTG 60.249 55.000 0.00 0.00 38.74 4.94
4 5 1.720694 CGCAACAACAAGTTCCCCGT 61.721 55.000 0.00 0.00 38.74 5.28
5 6 1.008995 CGCAACAACAAGTTCCCCG 60.009 57.895 0.00 0.00 38.74 5.73
6 7 0.030235 GTCGCAACAACAAGTTCCCC 59.970 55.000 0.00 0.00 38.74 4.81
7 8 1.021968 AGTCGCAACAACAAGTTCCC 58.978 50.000 0.00 0.00 38.74 3.97
81 82 1.202698 ACACTTCCACTTCACTCCAGC 60.203 52.381 0.00 0.00 0.00 4.85
318 321 5.531287 TCTTTCTTGGTTGTTAGCTTCCTTC 59.469 40.000 0.00 0.00 0.00 3.46
845 848 2.749621 CCTTTCCTTGTCTGAATTCCGG 59.250 50.000 2.27 0.00 0.00 5.14
846 849 3.674997 TCCTTTCCTTGTCTGAATTCCG 58.325 45.455 2.27 0.00 0.00 4.30
847 850 6.596309 ATTTCCTTTCCTTGTCTGAATTCC 57.404 37.500 2.27 0.00 0.00 3.01
848 851 7.093354 GGAATTTCCTTTCCTTGTCTGAATTC 58.907 38.462 8.25 0.00 41.69 2.17
913 916 2.428890 TCCTCTTTCGAGAGAGATTGGC 59.571 50.000 29.27 0.00 44.78 4.52
929 932 1.522900 CCTCTCCTCTCCTCTCCTCT 58.477 60.000 0.00 0.00 0.00 3.69
930 933 0.178990 GCCTCTCCTCTCCTCTCCTC 60.179 65.000 0.00 0.00 0.00 3.71
931 934 0.923729 TGCCTCTCCTCTCCTCTCCT 60.924 60.000 0.00 0.00 0.00 3.69
932 935 0.032615 TTGCCTCTCCTCTCCTCTCC 60.033 60.000 0.00 0.00 0.00 3.71
933 936 1.963515 GATTGCCTCTCCTCTCCTCTC 59.036 57.143 0.00 0.00 0.00 3.20
989 1002 2.760477 CCCCCATTGTCCGTCCAA 59.240 61.111 0.00 0.00 0.00 3.53
1100 1114 0.253044 AGCAAGCGTATGTGGATGGT 59.747 50.000 0.00 0.00 0.00 3.55
1777 1801 1.225376 TGAACATGGCGTTGTCGACC 61.225 55.000 14.12 0.00 45.66 4.79
2074 2098 1.064208 AGCTCGTAGATGTACACGCTG 59.936 52.381 10.89 0.00 38.05 5.18
2254 2278 4.717629 TGCACCGCCTTCTCGTCG 62.718 66.667 0.00 0.00 0.00 5.12
2371 2395 0.878961 AGGTGTTGAAGGCGAACGAC 60.879 55.000 0.00 0.00 0.00 4.34
2611 2639 3.896648 AACTACAGACAACCAATTGCG 57.103 42.857 0.00 0.00 39.66 4.85
2624 2652 2.767505 AGGAACGGCAGAAAACTACAG 58.232 47.619 0.00 0.00 0.00 2.74
2831 3193 2.398498 CGCCATACTGTGCTGTCTATC 58.602 52.381 0.00 0.00 0.00 2.08
2860 3222 9.578576 ACATAATACTATACGTCTACCCTGAAA 57.421 33.333 0.00 0.00 0.00 2.69
3231 3599 1.528824 CTCAATCATCAGGCCCCGT 59.471 57.895 0.00 0.00 0.00 5.28
3255 3623 2.307098 ACTCTGATAAAAGCTGGGCAGT 59.693 45.455 0.00 0.00 0.00 4.40
3256 3624 2.996631 ACTCTGATAAAAGCTGGGCAG 58.003 47.619 0.00 0.00 0.00 4.85
3358 3932 5.581085 ACCTTTTCGTAGCACTAATTAGCTG 59.419 40.000 12.54 10.68 41.97 4.24
3436 4010 6.037172 GCATGAGTTACCAGAATCGTGTATTT 59.963 38.462 0.00 0.00 32.46 1.40
3439 4013 4.081917 TGCATGAGTTACCAGAATCGTGTA 60.082 41.667 0.00 0.00 32.46 2.90
3460 4034 1.527844 GCTGGGACCTGGATGATGC 60.528 63.158 0.00 0.00 0.00 3.91
3462 4036 1.213926 GAAAGCTGGGACCTGGATGAT 59.786 52.381 0.00 0.00 0.00 2.45
3511 4085 7.676947 AGTGATATTAAAAAGAGCGGGCTATA 58.323 34.615 0.00 0.00 0.00 1.31
3538 4112 2.375174 TCTGTTAAGTGGCCATGGACTT 59.625 45.455 21.02 20.13 36.40 3.01
3618 4198 2.345244 CACGCCCAGAGCACTCTT 59.655 61.111 0.00 0.00 44.04 2.85
3766 4359 0.250901 AAGAGGTGCGAATGTGCCTT 60.251 50.000 0.00 0.00 0.00 4.35
3768 4361 0.955428 TGAAGAGGTGCGAATGTGCC 60.955 55.000 0.00 0.00 0.00 5.01
3770 4363 1.728971 GACTGAAGAGGTGCGAATGTG 59.271 52.381 0.00 0.00 0.00 3.21
3872 4470 8.954350 CAAGAATTTCAGAGGTAACAGATTCAT 58.046 33.333 0.00 0.00 41.41 2.57
3912 4510 6.101734 TGACATTCTGAAGGCCCTATTAAGAT 59.898 38.462 0.00 0.00 0.00 2.40
4065 4664 6.544564 AGTTTGAAGTATTTTGAACGGGAGAA 59.455 34.615 0.00 0.00 0.00 2.87
4078 4677 6.783708 TTTCCACCAACAGTTTGAAGTATT 57.216 33.333 0.00 0.00 34.24 1.89
4104 4703 5.399892 GGAGTAGCGATCTTTATCTGAAACG 59.600 44.000 0.00 0.00 0.00 3.60
4712 5318 6.765989 GGAGTAACACTGTATCAAATATGGCA 59.234 38.462 0.00 0.00 0.00 4.92
4713 5319 6.992715 AGGAGTAACACTGTATCAAATATGGC 59.007 38.462 0.00 0.00 0.00 4.40
4714 5320 9.477484 GTAGGAGTAACACTGTATCAAATATGG 57.523 37.037 0.00 0.00 0.00 2.74
4718 5324 8.362464 TGAGTAGGAGTAACACTGTATCAAAT 57.638 34.615 0.00 0.00 0.00 2.32
4719 5325 7.770366 TGAGTAGGAGTAACACTGTATCAAA 57.230 36.000 0.00 0.00 0.00 2.69
4720 5326 7.770366 TTGAGTAGGAGTAACACTGTATCAA 57.230 36.000 0.00 0.00 0.00 2.57
4730 5336 5.180868 TGACGAGACTTTGAGTAGGAGTAAC 59.819 44.000 0.00 0.00 0.00 2.50
4754 5360 5.416952 GTCATGAAACAAGAGGGTTCATGAT 59.583 40.000 29.52 1.76 41.54 2.45
4766 5372 7.533900 CAGTTAAACGGTATGTCATGAAACAAG 59.466 37.037 0.00 0.00 31.81 3.16
4823 5468 3.896648 ATGAACGATGTTGTTGACCAC 57.103 42.857 0.00 0.00 30.75 4.16
4831 5476 3.544048 GCACCGTGATATGAACGATGTTG 60.544 47.826 1.65 3.06 43.68 3.33
4908 5553 0.407139 ATCCAAAGGCCAAGAGTGCT 59.593 50.000 5.01 0.00 0.00 4.40
4966 5611 6.253727 CAGTACTTCAGTTTCGCTACATTAGG 59.746 42.308 0.00 0.00 0.00 2.69
5009 5654 1.357761 CCAAATAGGTCCCCACTTGGT 59.642 52.381 0.00 0.00 29.76 3.67
5016 5661 1.064685 CCACTGTCCAAATAGGTCCCC 60.065 57.143 0.00 0.00 39.02 4.81
5019 5664 2.290323 ACAGCCACTGTCCAAATAGGTC 60.290 50.000 0.00 0.00 41.21 3.85
5113 5758 7.761038 TCATCTTTTCCCTTAGTTTTTCTCC 57.239 36.000 0.00 0.00 0.00 3.71
5516 6266 4.122776 CAGTCAAGTACACACAGAGCTTT 58.877 43.478 0.00 0.00 0.00 3.51
5795 6652 7.829706 CCCTCTTTACTAGTAAAAGCAGGAATT 59.170 37.037 29.22 0.00 34.95 2.17
6021 7002 8.671987 ACTACCTTGAGGCAATATATGATACT 57.328 34.615 0.00 0.00 39.32 2.12
6058 7039 4.171663 TGAAAGCGCAATTTGCTATCAA 57.828 36.364 18.57 0.00 43.14 2.57
6161 7142 5.320277 AGAAAATCAGAAAGGACCTTCAGG 58.680 41.667 7.34 0.00 42.17 3.86
6584 7566 7.878547 ATTTGGTGAAAATTGTGGTTTCATT 57.121 28.000 3.18 0.00 44.46 2.57
6587 7569 7.659390 TCCATATTTGGTGAAAATTGTGGTTTC 59.341 33.333 1.86 0.00 44.06 2.78
6616 7598 7.333921 ACTGCATGAATATAGAGCATTAGAAGC 59.666 37.037 0.00 0.00 34.35 3.86
6690 7672 0.870393 CAGCATCACTTGTCTGCGTT 59.130 50.000 0.00 0.00 40.78 4.84
6762 7744 2.285083 CTCAACAACAAACGGAGGACA 58.715 47.619 0.00 0.00 0.00 4.02
6775 7757 0.478072 ACCACCATCAGGCTCAACAA 59.522 50.000 0.00 0.00 39.06 2.83
6952 7935 4.748600 CAGCATATCAAGCATCTCGAAGAA 59.251 41.667 0.00 0.00 34.09 2.52
7104 8091 0.376152 GCATCCACATCACAGAAGCG 59.624 55.000 0.00 0.00 0.00 4.68
7138 8125 2.038269 GGCCGTTCCAGCGAATTCA 61.038 57.895 6.22 0.00 34.01 2.57
7146 8133 0.035056 ATCCAAGAAGGCCGTTCCAG 60.035 55.000 0.00 0.00 35.51 3.86
7354 8347 1.153647 CGTGCAGTGGCGGATCTAA 60.154 57.895 0.00 0.00 45.35 2.10
7477 8471 6.958193 CGAGTGAGAACTGAAAAATAAGATGC 59.042 38.462 0.00 0.00 0.00 3.91
7536 8530 0.958876 GCGAACCGGGAGAAAACCAT 60.959 55.000 6.32 0.00 0.00 3.55
7655 8649 9.679661 AAGGAATGTGGTTTCTTAAAAATGTTT 57.320 25.926 0.00 0.00 33.73 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.