Multiple sequence alignment - TraesCS2D01G230800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G230800 chr2D 100.000 8115 0 0 1 8115 201950309 201942195 0.000000e+00 14986.0
1 TraesCS2D01G230800 chr2D 94.689 1431 48 15 3234 4638 621563656 621562228 0.000000e+00 2196.0
2 TraesCS2D01G230800 chr2D 94.104 1255 40 19 3235 4461 104966286 104967534 0.000000e+00 1877.0
3 TraesCS2D01G230800 chr2B 91.845 2379 109 30 5125 7455 378684390 378682049 0.000000e+00 3240.0
4 TraesCS2D01G230800 chr2B 89.903 2268 102 49 1 2205 378689135 378686932 0.000000e+00 2802.0
5 TraesCS2D01G230800 chr2B 86.939 1003 36 34 2209 3205 378686767 378685854 0.000000e+00 1038.0
6 TraesCS2D01G230800 chr2B 93.810 210 9 4 4920 5125 378684637 378684428 6.110000e-81 313.0
7 TraesCS2D01G230800 chr2B 80.399 301 41 11 7044 7338 764120897 764120609 6.380000e-51 213.0
8 TraesCS2D01G230800 chr2A 91.171 2356 67 38 5548 7805 226556606 226558918 0.000000e+00 3068.0
9 TraesCS2D01G230800 chr2A 88.533 1561 71 35 1703 3241 226554258 226555732 0.000000e+00 1792.0
10 TraesCS2D01G230800 chr2A 88.814 1189 64 28 498 1666 226552578 226553717 0.000000e+00 1395.0
11 TraesCS2D01G230800 chr2A 91.705 434 12 8 5125 5557 226556174 226556584 1.520000e-161 580.0
12 TraesCS2D01G230800 chr2A 91.950 323 19 1 7793 8115 226565552 226565867 5.780000e-121 446.0
13 TraesCS2D01G230800 chr2A 93.269 208 10 2 4922 5125 226555929 226556136 3.680000e-78 303.0
14 TraesCS2D01G230800 chr2A 92.195 205 15 1 4639 4842 226555724 226555928 1.030000e-73 289.0
15 TraesCS2D01G230800 chr2A 86.567 134 12 3 404 533 226552439 226552570 8.490000e-30 143.0
16 TraesCS2D01G230800 chr2A 96.078 51 2 0 1656 1706 226553938 226553988 5.220000e-12 84.2
17 TraesCS2D01G230800 chr2A 86.364 66 4 2 441 502 34154826 34154762 5.260000e-07 67.6
18 TraesCS2D01G230800 chr7D 93.890 1424 56 18 3235 4638 637661125 637662537 0.000000e+00 2119.0
19 TraesCS2D01G230800 chr7D 92.681 1421 65 21 3235 4638 583939432 583940830 0.000000e+00 2012.0
20 TraesCS2D01G230800 chr7D 94.444 1224 45 18 3437 4641 609176308 609175089 0.000000e+00 1862.0
21 TraesCS2D01G230800 chr7D 94.952 1149 33 15 3235 4372 571982685 571983819 0.000000e+00 1777.0
22 TraesCS2D01G230800 chr7D 78.780 377 77 3 6253 6627 567671973 567672348 4.860000e-62 250.0
23 TraesCS2D01G230800 chr7D 90.667 75 7 0 1078 1152 567669094 567669168 5.180000e-17 100.0
24 TraesCS2D01G230800 chr4D 93.091 1433 51 19 3232 4640 480986643 480988051 0.000000e+00 2054.0
25 TraesCS2D01G230800 chr4D 95.858 1183 28 11 3471 4638 449398468 449397292 0.000000e+00 1893.0
26 TraesCS2D01G230800 chr4D 94.647 1233 41 14 3427 4639 2515847 2514620 0.000000e+00 1888.0
27 TraesCS2D01G230800 chr4D 80.000 85 14 3 4842 4923 449913294 449913210 8.800000e-05 60.2
28 TraesCS2D01G230800 chr4D 100.000 28 0 0 442 469 447755869 447755896 1.500000e-02 52.8
29 TraesCS2D01G230800 chr3D 96.923 520 9 5 4124 4638 563267314 563267831 0.000000e+00 865.0
30 TraesCS2D01G230800 chr4B 89.596 644 56 5 7474 8114 191190045 191189410 0.000000e+00 808.0
31 TraesCS2D01G230800 chr4B 92.500 40 3 0 6637 6676 603016440 603016401 3.160000e-04 58.4
32 TraesCS2D01G230800 chr4B 100.000 28 0 0 442 469 560241769 560241796 1.500000e-02 52.8
33 TraesCS2D01G230800 chr1A 90.417 480 44 2 7492 7970 22736447 22735969 1.490000e-176 630.0
34 TraesCS2D01G230800 chr1A 81.605 299 40 8 7044 7338 521999032 521998745 4.900000e-57 233.0
35 TraesCS2D01G230800 chr1A 92.806 139 9 1 7976 8114 22734425 22734288 4.970000e-47 200.0
36 TraesCS2D01G230800 chr1A 81.092 238 28 8 6637 6864 250493319 250493089 3.010000e-39 174.0
37 TraesCS2D01G230800 chr1A 85.507 69 7 2 4859 4924 569960420 569960488 1.460000e-07 69.4
38 TraesCS2D01G230800 chr1A 81.176 85 11 4 4842 4923 272211513 272211595 6.800000e-06 63.9
39 TraesCS2D01G230800 chr5D 92.978 356 21 4 3235 3586 510380614 510380259 4.340000e-142 516.0
40 TraesCS2D01G230800 chr5D 84.706 85 10 3 4842 4923 232418803 232418887 1.880000e-11 82.4
41 TraesCS2D01G230800 chr5D 100.000 28 0 0 442 469 181614046 181614019 1.500000e-02 52.8
42 TraesCS2D01G230800 chr6D 92.508 307 17 6 3233 3534 419745804 419745499 1.250000e-117 435.0
43 TraesCS2D01G230800 chr5A 81.940 299 39 9 7044 7338 595027145 595027432 1.050000e-58 239.0
44 TraesCS2D01G230800 chr5A 80.268 299 44 9 7044 7338 308068783 308069070 2.290000e-50 211.0
45 TraesCS2D01G230800 chr5A 81.513 238 21 9 6637 6861 525154604 525154831 3.010000e-39 174.0
46 TraesCS2D01G230800 chr5A 94.030 67 4 0 6868 6934 328827027 328826961 1.440000e-17 102.0
47 TraesCS2D01G230800 chr5A 92.537 67 5 0 6868 6934 328827274 328827208 6.700000e-16 97.1
48 TraesCS2D01G230800 chr5A 83.951 81 10 3 4841 4918 631619361 631619281 3.140000e-09 75.0
49 TraesCS2D01G230800 chr3A 81.695 295 39 8 7048 7338 713988130 713988413 1.760000e-56 231.0
50 TraesCS2D01G230800 chr7B 77.807 374 77 5 6256 6626 621919547 621919917 8.190000e-55 226.0
51 TraesCS2D01G230800 chr7B 86.667 165 15 4 6648 6812 708294129 708294286 8.370000e-40 176.0
52 TraesCS2D01G230800 chr7B 92.000 75 6 0 1078 1152 621917110 621917184 1.110000e-18 106.0
53 TraesCS2D01G230800 chr7B 91.045 67 6 0 6868 6934 576426444 576426510 3.120000e-14 91.6
54 TraesCS2D01G230800 chr7B 86.441 59 7 1 134 192 484894255 484894312 6.800000e-06 63.9
55 TraesCS2D01G230800 chr7A 80.936 299 41 9 7044 7338 9316556 9316270 1.060000e-53 222.0
56 TraesCS2D01G230800 chr7A 93.333 75 5 0 1078 1152 654562601 654562675 2.390000e-20 111.0
57 TraesCS2D01G230800 chr6B 80.936 299 42 8 7044 7338 558511900 558512187 1.060000e-53 222.0
58 TraesCS2D01G230800 chr5B 80.252 238 30 7 6637 6864 687957213 687956983 6.520000e-36 163.0
59 TraesCS2D01G230800 chr5B 100.000 29 0 0 441 469 89314110 89314138 4.000000e-03 54.7
60 TraesCS2D01G230800 chr5B 100.000 28 0 0 442 469 163266286 163266259 1.500000e-02 52.8
61 TraesCS2D01G230800 chr3B 83.523 176 22 3 6637 6812 811784013 811784181 3.030000e-34 158.0
62 TraesCS2D01G230800 chr1D 84.884 86 10 3 4841 4923 364604707 364604622 5.220000e-12 84.2
63 TraesCS2D01G230800 chr4A 86.111 72 7 2 4855 4923 570481455 570481384 3.140000e-09 75.0
64 TraesCS2D01G230800 chr4A 100.000 28 0 0 442 469 22754042 22754015 1.500000e-02 52.8
65 TraesCS2D01G230800 chrUn 90.741 54 3 2 4883 4935 261756626 261756574 4.060000e-08 71.3
66 TraesCS2D01G230800 chrUn 90.741 54 3 2 4883 4935 271488207 271488155 4.060000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G230800 chr2D 201942195 201950309 8114 True 14986.000 14986 100.00000 1 8115 1 chr2D.!!$R1 8114
1 TraesCS2D01G230800 chr2D 621562228 621563656 1428 True 2196.000 2196 94.68900 3234 4638 1 chr2D.!!$R2 1404
2 TraesCS2D01G230800 chr2D 104966286 104967534 1248 False 1877.000 1877 94.10400 3235 4461 1 chr2D.!!$F1 1226
3 TraesCS2D01G230800 chr2B 378682049 378689135 7086 True 1848.250 3240 90.62425 1 7455 4 chr2B.!!$R2 7454
4 TraesCS2D01G230800 chr2A 226552439 226558918 6479 False 956.775 3068 91.04150 404 7805 8 chr2A.!!$F2 7401
5 TraesCS2D01G230800 chr7D 637661125 637662537 1412 False 2119.000 2119 93.89000 3235 4638 1 chr7D.!!$F3 1403
6 TraesCS2D01G230800 chr7D 583939432 583940830 1398 False 2012.000 2012 92.68100 3235 4638 1 chr7D.!!$F2 1403
7 TraesCS2D01G230800 chr7D 609175089 609176308 1219 True 1862.000 1862 94.44400 3437 4641 1 chr7D.!!$R1 1204
8 TraesCS2D01G230800 chr7D 571982685 571983819 1134 False 1777.000 1777 94.95200 3235 4372 1 chr7D.!!$F1 1137
9 TraesCS2D01G230800 chr4D 480986643 480988051 1408 False 2054.000 2054 93.09100 3232 4640 1 chr4D.!!$F2 1408
10 TraesCS2D01G230800 chr4D 449397292 449398468 1176 True 1893.000 1893 95.85800 3471 4638 1 chr4D.!!$R2 1167
11 TraesCS2D01G230800 chr4D 2514620 2515847 1227 True 1888.000 1888 94.64700 3427 4639 1 chr4D.!!$R1 1212
12 TraesCS2D01G230800 chr3D 563267314 563267831 517 False 865.000 865 96.92300 4124 4638 1 chr3D.!!$F1 514
13 TraesCS2D01G230800 chr4B 191189410 191190045 635 True 808.000 808 89.59600 7474 8114 1 chr4B.!!$R1 640
14 TraesCS2D01G230800 chr1A 22734288 22736447 2159 True 415.000 630 91.61150 7492 8114 2 chr1A.!!$R3 622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 1005 0.191064 TCCCACTCACAAGTCCCTCT 59.809 55.0 0.00 0.00 31.71 3.69 F
2412 3224 0.107643 TCGGGATGGAATAATGCGCA 59.892 50.0 14.96 14.96 0.00 6.09 F
3239 5107 0.248134 GCGCTCCGTGAGTACACTAG 60.248 60.0 0.00 0.00 43.99 2.57 F
4363 6272 0.179032 ACCAGTTCGTGCCATGAACA 60.179 50.0 26.80 0.00 44.42 3.18 F
4793 6763 0.033642 GCGCCCCCAGTTAGATACTC 59.966 60.0 0.00 0.00 33.85 2.59 F
5219 7235 0.038435 TTGGTGCGATGGTTGCAATG 60.038 50.0 0.59 0.00 45.23 2.82 F
5222 7238 0.666880 GTGCGATGGTTGCAATGCAA 60.667 50.0 17.55 17.55 46.80 4.08 F
6158 8242 0.828343 GGCCCGCTCTATCAGGTACT 60.828 60.0 0.00 0.00 43.88 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2518 3330 0.109153 CGCTGATCCATTCCATCCCA 59.891 55.000 0.00 0.0 0.00 4.37 R
3242 5110 0.317160 CGGGACAAAAGCCCCTTTTC 59.683 55.000 0.28 0.0 41.05 2.29 R
4420 6330 0.250597 GCACCAACGGGACTAAAGGT 60.251 55.000 0.00 0.0 38.05 3.50 R
5317 7333 0.184451 CCTTGGCCTGCAGGATGTAT 59.816 55.000 37.21 0.0 39.31 2.29 R
6645 8739 0.036388 GACAGGAAATCGCTCCCACA 60.036 55.000 0.00 0.0 35.95 4.17 R
6646 8740 0.250513 AGACAGGAAATCGCTCCCAC 59.749 55.000 0.00 0.0 35.95 4.61 R
6652 8746 1.401539 GCCACAAAGACAGGAAATCGC 60.402 52.381 0.00 0.0 0.00 4.58 R
7637 9794 0.547712 TCTAACCCAGCTTGGAGCCT 60.548 55.000 11.55 0.0 43.77 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 111 2.914695 ACACAAAGGCACGTACCTAA 57.085 45.000 8.02 0.00 39.93 2.69
110 112 2.486918 ACACAAAGGCACGTACCTAAC 58.513 47.619 8.02 0.00 39.93 2.34
148 150 7.238710 ACTCCCACCATCCCATAATATAAAAC 58.761 38.462 0.00 0.00 0.00 2.43
149 151 6.242396 TCCCACCATCCCATAATATAAAACG 58.758 40.000 0.00 0.00 0.00 3.60
250 255 1.871039 TCTTTTCTTTCCGGCAGAACG 59.129 47.619 13.81 9.32 32.95 3.95
259 264 3.479269 GGCAGAACGCTTCGTCCG 61.479 66.667 0.00 0.00 39.99 4.79
267 272 1.807981 CGCTTCGTCCGGTTATGCA 60.808 57.895 0.00 0.00 0.00 3.96
270 275 1.078988 TTCGTCCGGTTATGCACCC 60.079 57.895 0.00 0.00 43.83 4.61
285 290 1.823250 GCACCCTTCCACCACTTTCAT 60.823 52.381 0.00 0.00 0.00 2.57
371 376 9.190858 TCATTTTAATTTACTGACATTGTGCAC 57.809 29.630 10.75 10.75 0.00 4.57
374 379 4.771590 ATTTACTGACATTGTGCACCAG 57.228 40.909 15.69 15.73 0.00 4.00
381 386 2.878406 GACATTGTGCACCAGTTGTACT 59.122 45.455 15.69 0.00 41.23 2.73
389 394 5.358442 TGTGCACCAGTTGTACTGTTATTTT 59.642 36.000 15.69 0.00 44.50 1.82
390 395 5.912955 GTGCACCAGTTGTACTGTTATTTTC 59.087 40.000 5.22 0.00 44.50 2.29
391 396 5.825679 TGCACCAGTTGTACTGTTATTTTCT 59.174 36.000 6.13 0.00 44.50 2.52
392 397 6.017440 TGCACCAGTTGTACTGTTATTTTCTC 60.017 38.462 6.13 0.00 44.50 2.87
393 398 6.590357 CACCAGTTGTACTGTTATTTTCTCG 58.410 40.000 6.13 0.00 44.50 4.04
394 399 5.178809 ACCAGTTGTACTGTTATTTTCTCGC 59.821 40.000 6.13 0.00 44.50 5.03
395 400 5.178623 CCAGTTGTACTGTTATTTTCTCGCA 59.821 40.000 6.13 0.00 44.50 5.10
396 401 6.293190 CCAGTTGTACTGTTATTTTCTCGCAA 60.293 38.462 6.13 0.00 44.50 4.85
397 402 7.129622 CAGTTGTACTGTTATTTTCTCGCAAA 58.870 34.615 0.00 0.00 41.19 3.68
398 403 7.642194 CAGTTGTACTGTTATTTTCTCGCAAAA 59.358 33.333 0.00 0.00 41.19 2.44
399 404 8.185505 AGTTGTACTGTTATTTTCTCGCAAAAA 58.814 29.630 0.00 0.00 32.99 1.94
400 405 8.469125 GTTGTACTGTTATTTTCTCGCAAAAAG 58.531 33.333 0.00 0.00 32.04 2.27
401 406 7.921787 TGTACTGTTATTTTCTCGCAAAAAGA 58.078 30.769 0.00 0.00 32.04 2.52
402 407 8.399425 TGTACTGTTATTTTCTCGCAAAAAGAA 58.601 29.630 0.00 1.08 32.04 2.52
599 650 4.637483 AAATGTAAATGATGCCCGACAG 57.363 40.909 0.00 0.00 0.00 3.51
630 681 1.743958 AGCACACTGCCGTACTAGTAG 59.256 52.381 1.87 0.00 46.52 2.57
644 695 8.732531 GCCGTACTAGTAGATGATCTATCTTTT 58.267 37.037 5.33 5.32 43.68 2.27
683 734 2.061848 TCATTCCTCCCTCAACAACCA 58.938 47.619 0.00 0.00 0.00 3.67
758 809 1.352622 ACACCATCACCACCACCACT 61.353 55.000 0.00 0.00 0.00 4.00
759 810 0.606401 CACCATCACCACCACCACTC 60.606 60.000 0.00 0.00 0.00 3.51
760 811 0.768221 ACCATCACCACCACCACTCT 60.768 55.000 0.00 0.00 0.00 3.24
761 812 1.275666 CCATCACCACCACCACTCTA 58.724 55.000 0.00 0.00 0.00 2.43
762 813 1.208052 CCATCACCACCACCACTCTAG 59.792 57.143 0.00 0.00 0.00 2.43
763 814 1.902508 CATCACCACCACCACTCTAGT 59.097 52.381 0.00 0.00 0.00 2.57
764 815 2.984435 TCACCACCACCACTCTAGTA 57.016 50.000 0.00 0.00 0.00 1.82
765 816 2.522185 TCACCACCACCACTCTAGTAC 58.478 52.381 0.00 0.00 0.00 2.73
766 817 1.549170 CACCACCACCACTCTAGTACC 59.451 57.143 0.00 0.00 0.00 3.34
924 1005 0.191064 TCCCACTCACAAGTCCCTCT 59.809 55.000 0.00 0.00 31.71 3.69
934 1015 3.103742 ACAAGTCCCTCTCATCTCCTTC 58.896 50.000 0.00 0.00 0.00 3.46
937 1018 1.062505 GTCCCTCTCATCTCCTTCCCT 60.063 57.143 0.00 0.00 0.00 4.20
974 1055 1.349259 CCATTGCTGCAAGAAAGCGC 61.349 55.000 20.72 0.00 43.88 5.92
1155 1236 1.005748 CGTCAAGCAGCAGGTCTCA 60.006 57.895 0.00 0.00 0.00 3.27
1161 1242 2.033755 GCAGCAGGTCTCAGTGCAG 61.034 63.158 0.00 0.00 42.47 4.41
1182 1263 5.752955 GCAGTCCATTATTCTCTCTCTGTTC 59.247 44.000 0.00 0.00 0.00 3.18
1232 1315 2.535485 TTAGCATCACCCCAGCCGTG 62.535 60.000 0.00 0.00 0.00 4.94
1265 1348 4.314522 TGAATAAATCTGTTGGCAGGGA 57.685 40.909 0.00 0.00 42.78 4.20
1380 1463 0.688087 CCTCCTCTCCTGGTACACCC 60.688 65.000 0.00 0.00 34.29 4.61
1414 1497 5.504010 CGAATCCATCCATTTCGATTTCGTT 60.504 40.000 0.00 0.00 43.61 3.85
1415 1498 6.292649 CGAATCCATCCATTTCGATTTCGTTA 60.293 38.462 0.00 0.00 43.61 3.18
1416 1499 5.728351 TCCATCCATTTCGATTTCGTTAC 57.272 39.130 0.00 0.00 40.80 2.50
1417 1500 5.179533 TCCATCCATTTCGATTTCGTTACA 58.820 37.500 0.00 0.00 40.80 2.41
1473 1579 6.205464 CGGCCATCAATTGAATATCTTACTGT 59.795 38.462 13.09 0.00 0.00 3.55
1564 1670 9.330063 TCTTGCTACAAGTTTTAGATATCCATG 57.670 33.333 7.18 0.00 0.00 3.66
1574 1683 8.840321 AGTTTTAGATATCCATGATCCGTTTTG 58.160 33.333 0.00 0.00 0.00 2.44
1603 1712 7.675962 TCCAAGTAAATAAATGCTGTACGTT 57.324 32.000 0.00 0.00 0.00 3.99
1610 1719 9.601971 GTAAATAAATGCTGTACGTTTTGAAGA 57.398 29.630 0.00 0.00 38.46 2.87
1613 1722 4.685169 ATGCTGTACGTTTTGAAGATGG 57.315 40.909 0.00 0.00 0.00 3.51
1644 1754 2.076863 CTTGCCCAGTTGTAGTGCTAC 58.923 52.381 2.60 2.60 36.63 3.58
1655 1765 0.446616 TAGTGCTACGCTCGAGTGTG 59.553 55.000 35.56 26.03 39.38 3.82
1656 1766 1.801913 GTGCTACGCTCGAGTGTGG 60.802 63.158 35.56 33.30 39.38 4.17
1657 1767 2.265904 TGCTACGCTCGAGTGTGGT 61.266 57.895 35.56 20.10 38.93 4.16
1658 1768 1.514443 GCTACGCTCGAGTGTGGTC 60.514 63.158 35.56 25.03 38.93 4.02
1706 2329 5.863397 GCATGCAACTTTAAGATGTGCTTAA 59.137 36.000 14.21 0.00 45.01 1.85
1780 2407 6.239317 GGCTATATGATTAGGCGATGTGGATA 60.239 42.308 0.00 0.00 35.39 2.59
1872 2500 3.248266 GCAAATCCTCAAGTACGTACGT 58.752 45.455 25.98 25.98 0.00 3.57
1873 2501 4.414852 GCAAATCCTCAAGTACGTACGTA 58.585 43.478 23.60 23.60 0.00 3.57
1874 2502 4.498323 GCAAATCCTCAAGTACGTACGTAG 59.502 45.833 27.48 17.16 0.00 3.51
1876 2504 6.675486 GCAAATCCTCAAGTACGTACGTAGTA 60.675 42.308 30.37 17.94 45.11 1.82
1930 2558 2.727798 CGCAGTTGCAAATCTTCAAAGG 59.272 45.455 0.00 0.00 42.21 3.11
1986 2619 1.285950 CGTGTCTGCTTCACTCGGA 59.714 57.895 0.00 0.00 34.14 4.55
2031 2667 2.005971 AGTGTTCCTTAATCGACGGC 57.994 50.000 0.00 0.00 0.00 5.68
2205 2842 4.052159 ACTCCACATCTTTGCGATCTAG 57.948 45.455 0.00 0.00 0.00 2.43
2207 2844 4.081420 ACTCCACATCTTTGCGATCTAGTT 60.081 41.667 0.00 0.00 0.00 2.24
2241 3039 2.519949 TGGCACATGCACAGGGAA 59.480 55.556 6.15 0.00 44.36 3.97
2410 3222 1.156736 GGTCGGGATGGAATAATGCG 58.843 55.000 0.00 0.00 0.00 4.73
2411 3223 0.517316 GTCGGGATGGAATAATGCGC 59.483 55.000 0.00 0.00 0.00 6.09
2412 3224 0.107643 TCGGGATGGAATAATGCGCA 59.892 50.000 14.96 14.96 0.00 6.09
2413 3225 0.518636 CGGGATGGAATAATGCGCAG 59.481 55.000 18.32 0.00 0.00 5.18
2414 3226 0.883833 GGGATGGAATAATGCGCAGG 59.116 55.000 18.32 0.00 0.00 4.85
2415 3227 0.883833 GGATGGAATAATGCGCAGGG 59.116 55.000 18.32 0.00 0.00 4.45
2416 3228 0.883833 GATGGAATAATGCGCAGGGG 59.116 55.000 18.32 0.00 0.00 4.79
2417 3229 1.181098 ATGGAATAATGCGCAGGGGC 61.181 55.000 18.32 3.75 0.00 5.80
2518 3330 1.002502 GCTTTTACCACGAGCCCCT 60.003 57.895 0.00 0.00 0.00 4.79
2519 3331 1.305930 GCTTTTACCACGAGCCCCTG 61.306 60.000 0.00 0.00 0.00 4.45
2520 3332 0.676782 CTTTTACCACGAGCCCCTGG 60.677 60.000 0.00 0.00 0.00 4.45
2521 3333 2.132089 TTTTACCACGAGCCCCTGGG 62.132 60.000 5.50 5.50 38.57 4.45
2522 3334 3.549433 TTACCACGAGCCCCTGGGA 62.549 63.158 16.20 0.00 37.50 4.37
2535 3347 1.075050 CCCTGGGATGGAATGGATCAG 59.925 57.143 7.01 0.00 0.00 2.90
2536 3348 1.547223 CCTGGGATGGAATGGATCAGC 60.547 57.143 0.00 0.00 0.00 4.26
2555 3367 1.817209 GCTTCCCTCTACCTCACGG 59.183 63.158 0.00 0.00 0.00 4.94
2584 3396 1.741401 CGTCGGTGACCATGTGCAT 60.741 57.895 1.11 0.00 0.00 3.96
2755 3567 4.956075 CCTGTTTAAGCCCACCTCAAATAT 59.044 41.667 0.00 0.00 0.00 1.28
2785 3598 4.900635 TTTTCTTCCTCAAAGCTGACAC 57.099 40.909 0.00 0.00 34.76 3.67
2786 3599 2.550830 TCTTCCTCAAAGCTGACACC 57.449 50.000 0.00 0.00 34.76 4.16
2787 3600 1.072331 TCTTCCTCAAAGCTGACACCC 59.928 52.381 0.00 0.00 34.76 4.61
2788 3601 1.072965 CTTCCTCAAAGCTGACACCCT 59.927 52.381 0.00 0.00 0.00 4.34
2789 3602 1.140312 TCCTCAAAGCTGACACCCTT 58.860 50.000 0.00 0.00 0.00 3.95
2850 3669 9.639601 TGTTTCCTTTCTTTCTTTCTTTCTTTC 57.360 29.630 0.00 0.00 0.00 2.62
2898 3717 1.008309 GGGATGAGAGCGACGCTAC 60.008 63.158 24.55 19.53 39.88 3.58
2962 3781 1.523758 CAAGTGGTCAGCTGGGTAAC 58.476 55.000 15.13 4.10 0.00 2.50
2963 3782 1.136828 AAGTGGTCAGCTGGGTAACA 58.863 50.000 15.13 0.00 39.74 2.41
2964 3783 1.136828 AGTGGTCAGCTGGGTAACAA 58.863 50.000 15.13 0.00 39.74 2.83
2966 3785 2.092103 AGTGGTCAGCTGGGTAACAAAA 60.092 45.455 15.13 0.00 39.74 2.44
2967 3786 2.691011 GTGGTCAGCTGGGTAACAAAAA 59.309 45.455 15.13 0.00 39.74 1.94
3045 3873 7.140048 GCACTGGCTTATAAGTACTACTGTAG 58.860 42.308 13.13 13.13 36.96 2.74
3046 3874 7.201803 GCACTGGCTTATAAGTACTACTGTAGT 60.202 40.741 22.72 22.72 38.79 2.73
3047 3875 9.334947 CACTGGCTTATAAGTACTACTGTAGTA 57.665 37.037 20.74 20.74 40.14 1.82
3181 4012 3.614616 CACAGAGAGTCGCAAGTATTTCC 59.385 47.826 0.00 0.00 39.48 3.13
3205 5073 0.878416 GTGGTCACGCAAGCCATTAA 59.122 50.000 0.00 0.00 45.62 1.40
3217 5085 4.731773 GCAAGCCATTAATAGCACACAGAC 60.732 45.833 8.59 0.00 0.00 3.51
3235 5103 3.755628 GGGCGCTCCGTGAGTACA 61.756 66.667 7.64 0.00 31.39 2.90
3236 5104 2.506438 GGCGCTCCGTGAGTACAC 60.506 66.667 7.64 0.00 42.88 2.90
3237 5105 2.567049 GCGCTCCGTGAGTACACT 59.433 61.111 0.00 0.00 43.99 3.55
3238 5106 1.651240 GGCGCTCCGTGAGTACACTA 61.651 60.000 7.64 0.00 43.99 2.74
3239 5107 0.248134 GCGCTCCGTGAGTACACTAG 60.248 60.000 0.00 0.00 43.99 2.57
3240 5108 0.248134 CGCTCCGTGAGTACACTAGC 60.248 60.000 0.00 0.00 43.58 3.42
3241 5109 0.809385 GCTCCGTGAGTACACTAGCA 59.191 55.000 14.74 0.00 44.93 3.49
3242 5110 1.202200 GCTCCGTGAGTACACTAGCAG 60.202 57.143 14.74 0.00 44.93 4.24
3290 5158 1.171308 GGCCTTTAGTCCCGGTTTTC 58.829 55.000 0.00 0.00 0.00 2.29
3296 5164 1.047002 TAGTCCCGGTTTTCGAACCA 58.953 50.000 7.06 0.00 42.97 3.67
3314 5182 2.830321 ACCAGGACTAAAGGGTCGTTAG 59.170 50.000 0.00 0.00 37.12 2.34
3369 5237 1.771783 AACCGGGACTAAAGGCCGTT 61.772 55.000 9.44 9.44 0.00 4.44
3372 5240 0.739813 CGGGACTAAAGGCCGTTCAG 60.740 60.000 7.36 6.76 0.00 3.02
3377 5245 0.676782 CTAAAGGCCGTTCAGGTGGG 60.677 60.000 7.36 0.00 43.70 4.61
3443 5311 5.768752 ACCGGGGCTAAAGGAAATTTTATA 58.231 37.500 6.32 0.00 32.01 0.98
3781 5666 8.050778 TCACTGTTTGAGTTTGAAACTATTGT 57.949 30.769 11.01 2.32 43.03 2.71
4363 6272 0.179032 ACCAGTTCGTGCCATGAACA 60.179 50.000 26.80 0.00 44.42 3.18
4420 6330 0.035739 GGCACCAACGGGACTAAAGA 59.964 55.000 0.00 0.00 38.05 2.52
4421 6331 1.154197 GCACCAACGGGACTAAAGAC 58.846 55.000 0.00 0.00 38.05 3.01
4424 6334 2.052468 ACCAACGGGACTAAAGACCTT 58.948 47.619 0.00 0.00 38.05 3.50
4425 6335 2.440627 ACCAACGGGACTAAAGACCTTT 59.559 45.455 0.41 0.41 38.05 3.11
4426 6336 3.647590 ACCAACGGGACTAAAGACCTTTA 59.352 43.478 2.66 2.66 38.05 1.85
4427 6337 4.262765 ACCAACGGGACTAAAGACCTTTAG 60.263 45.833 21.54 21.54 45.48 1.85
4467 6431 1.608025 CGGTACTAATGGGCATCGCAT 60.608 52.381 0.00 0.00 38.66 4.73
4649 6613 6.415206 TTTGTACTAGTGGTAGACAGCTTT 57.585 37.500 5.39 0.00 0.00 3.51
4672 6636 0.036105 TCGCTGCAAGATGTCACCAT 60.036 50.000 0.00 0.00 34.07 3.55
4735 6704 1.495584 CGTATCAATTCGTGGCGGGG 61.496 60.000 0.00 0.00 0.00 5.73
4793 6763 0.033642 GCGCCCCCAGTTAGATACTC 59.966 60.000 0.00 0.00 33.85 2.59
4794 6764 0.680061 CGCCCCCAGTTAGATACTCC 59.320 60.000 0.00 0.00 33.85 3.85
4796 6766 1.339097 CCCCCAGTTAGATACTCCCG 58.661 60.000 0.00 0.00 33.85 5.14
4804 6774 5.221461 CCAGTTAGATACTCCCGCTGTAAAT 60.221 44.000 0.00 0.00 33.85 1.40
4807 6777 7.595502 CAGTTAGATACTCCCGCTGTAAATAAG 59.404 40.741 0.00 0.00 33.85 1.73
4817 6787 6.041182 TCCCGCTGTAAATAAGTATAAGAGCA 59.959 38.462 0.00 0.00 0.00 4.26
4851 6821 9.719279 CAGTAAAATAGTAAAGTACTCTCTCCG 57.281 37.037 0.00 0.00 40.14 4.63
4852 6822 9.460019 AGTAAAATAGTAAAGTACTCTCTCCGT 57.540 33.333 0.00 0.00 40.14 4.69
4855 6825 9.636879 AAAATAGTAAAGTACTCTCTCCGTTTC 57.363 33.333 0.00 0.00 40.14 2.78
4856 6826 7.934855 ATAGTAAAGTACTCTCTCCGTTTCA 57.065 36.000 0.00 0.00 40.14 2.69
4857 6827 6.837471 AGTAAAGTACTCTCTCCGTTTCAT 57.163 37.500 0.00 0.00 32.47 2.57
4858 6828 7.934855 AGTAAAGTACTCTCTCCGTTTCATA 57.065 36.000 0.00 0.00 32.47 2.15
4859 6829 8.345724 AGTAAAGTACTCTCTCCGTTTCATAA 57.654 34.615 0.00 0.00 32.47 1.90
4860 6830 8.968969 AGTAAAGTACTCTCTCCGTTTCATAAT 58.031 33.333 0.00 0.00 32.47 1.28
4916 6886 9.777575 AAAACGTTTTTATATTATGGAACGGAG 57.222 29.630 20.26 1.61 42.73 4.63
4917 6887 7.486802 ACGTTTTTATATTATGGAACGGAGG 57.513 36.000 17.40 0.00 42.73 4.30
4918 6888 6.484308 ACGTTTTTATATTATGGAACGGAGGG 59.516 38.462 17.40 1.16 42.73 4.30
4919 6889 6.707161 CGTTTTTATATTATGGAACGGAGGGA 59.293 38.462 10.56 0.00 36.99 4.20
4920 6890 7.095355 CGTTTTTATATTATGGAACGGAGGGAG 60.095 40.741 10.56 0.00 36.99 4.30
4921 6891 7.383156 TTTTATATTATGGAACGGAGGGAGT 57.617 36.000 0.00 0.00 0.00 3.85
4922 6892 8.495160 TTTTATATTATGGAACGGAGGGAGTA 57.505 34.615 0.00 0.00 0.00 2.59
4973 6947 0.321210 CCAACACTCGTGCCCATGTA 60.321 55.000 0.00 0.00 0.00 2.29
5024 6998 3.005554 CTGGTGGAGTATTTCAGTGCTG 58.994 50.000 0.00 0.00 0.00 4.41
5070 7048 5.911280 CGTACTACTTTTTGACTCGTTGAGA 59.089 40.000 0.00 0.00 33.32 3.27
5171 7187 6.144854 TGAGAAAGAAAAACGAATGATGCAG 58.855 36.000 0.00 0.00 0.00 4.41
5172 7188 6.076981 AGAAAGAAAAACGAATGATGCAGT 57.923 33.333 0.00 0.00 0.00 4.40
5173 7189 6.145535 AGAAAGAAAAACGAATGATGCAGTC 58.854 36.000 0.00 0.00 0.00 3.51
5174 7190 5.695851 AAGAAAAACGAATGATGCAGTCT 57.304 34.783 0.00 0.00 0.00 3.24
5176 7192 3.729526 AAAACGAATGATGCAGTCTCG 57.270 42.857 8.26 8.26 0.00 4.04
5204 7220 4.581309 ACTGATGAGGATGATGTTTGGT 57.419 40.909 0.00 0.00 0.00 3.67
5205 7221 4.267536 ACTGATGAGGATGATGTTTGGTG 58.732 43.478 0.00 0.00 0.00 4.17
5218 7234 0.678395 TTTGGTGCGATGGTTGCAAT 59.322 45.000 0.59 0.00 45.23 3.56
5219 7235 0.038435 TTGGTGCGATGGTTGCAATG 60.038 50.000 0.59 0.00 45.23 2.82
5220 7236 1.806758 GGTGCGATGGTTGCAATGC 60.807 57.895 0.59 0.00 45.23 3.56
5221 7237 1.080637 GTGCGATGGTTGCAATGCA 60.081 52.632 2.72 2.72 45.23 3.96
5222 7238 0.666880 GTGCGATGGTTGCAATGCAA 60.667 50.000 17.55 17.55 46.80 4.08
5240 7256 3.650298 ATGCAATGCAGGAGCGGGT 62.650 57.895 14.98 0.00 43.65 5.28
5535 7551 0.872021 CTCTATCGTCTTGCCACGCC 60.872 60.000 0.00 0.00 39.74 5.68
5676 7731 2.825836 GGCCTGCTCATCAACGGG 60.826 66.667 0.00 0.00 35.26 5.28
5733 7812 4.938832 CCCGGTAAATACATGTCTCAACAA 59.061 41.667 0.00 0.00 39.30 2.83
5734 7813 5.588648 CCCGGTAAATACATGTCTCAACAAT 59.411 40.000 0.00 0.00 39.30 2.71
5738 7817 7.277760 CGGTAAATACATGTCTCAACAATCTGA 59.722 37.037 0.00 0.00 39.30 3.27
5783 7862 2.678324 GTGCTGGTCTAGTGACAGAAC 58.322 52.381 12.85 9.68 44.61 3.01
5821 7905 3.564027 GCAGGCATGACGTACCGC 61.564 66.667 0.62 0.00 0.00 5.68
6158 8242 0.828343 GGCCCGCTCTATCAGGTACT 60.828 60.000 0.00 0.00 43.88 2.73
6159 8243 1.547223 GGCCCGCTCTATCAGGTACTA 60.547 57.143 0.00 0.00 36.02 1.82
6160 8244 2.448453 GCCCGCTCTATCAGGTACTAT 58.552 52.381 0.00 0.00 36.02 2.12
6161 8245 2.424246 GCCCGCTCTATCAGGTACTATC 59.576 54.545 0.00 0.00 36.02 2.08
6162 8246 2.678836 CCCGCTCTATCAGGTACTATCG 59.321 54.545 0.00 0.00 36.02 2.92
6163 8247 2.096174 CCGCTCTATCAGGTACTATCGC 59.904 54.545 0.00 0.00 36.02 4.58
6164 8248 3.004171 CGCTCTATCAGGTACTATCGCT 58.996 50.000 0.00 0.00 36.02 4.93
6165 8249 3.062909 CGCTCTATCAGGTACTATCGCTC 59.937 52.174 0.00 0.00 36.02 5.03
6169 8253 5.805728 TCTATCAGGTACTATCGCTCATCA 58.194 41.667 0.00 0.00 36.02 3.07
6170 8254 5.877564 TCTATCAGGTACTATCGCTCATCAG 59.122 44.000 0.00 0.00 36.02 2.90
6175 8261 4.036971 AGGTACTATCGCTCATCAGTTCAC 59.963 45.833 0.00 0.00 36.02 3.18
6188 8274 7.360776 GCTCATCAGTTCACTTTCTTTTCCTAG 60.361 40.741 0.00 0.00 0.00 3.02
6243 8335 2.040813 ACAATGTGACCTGATTCTGCCT 59.959 45.455 0.00 0.00 0.00 4.75
6244 8336 3.264193 ACAATGTGACCTGATTCTGCCTA 59.736 43.478 0.00 0.00 0.00 3.93
6637 8731 2.208132 TGTCGGGTATGCATTGGTTT 57.792 45.000 3.54 0.00 0.00 3.27
6638 8732 2.520069 TGTCGGGTATGCATTGGTTTT 58.480 42.857 3.54 0.00 0.00 2.43
6640 8734 2.490115 GTCGGGTATGCATTGGTTTTCA 59.510 45.455 3.54 0.00 0.00 2.69
6641 8735 3.057174 GTCGGGTATGCATTGGTTTTCAA 60.057 43.478 3.54 0.00 40.01 2.69
6642 8736 3.192422 TCGGGTATGCATTGGTTTTCAAG 59.808 43.478 3.54 0.00 38.95 3.02
6643 8737 3.675775 CGGGTATGCATTGGTTTTCAAGG 60.676 47.826 3.54 0.00 38.95 3.61
6644 8738 3.369366 GGGTATGCATTGGTTTTCAAGGG 60.369 47.826 3.54 0.00 38.95 3.95
6645 8739 3.260632 GGTATGCATTGGTTTTCAAGGGT 59.739 43.478 3.54 0.00 38.95 4.34
6646 8740 2.906691 TGCATTGGTTTTCAAGGGTG 57.093 45.000 0.00 0.00 38.95 4.61
6649 8743 2.806382 GCATTGGTTTTCAAGGGTGTGG 60.806 50.000 0.00 0.00 38.95 4.17
6650 8744 1.490574 TTGGTTTTCAAGGGTGTGGG 58.509 50.000 0.00 0.00 0.00 4.61
6651 8745 0.631753 TGGTTTTCAAGGGTGTGGGA 59.368 50.000 0.00 0.00 0.00 4.37
6652 8746 1.328279 GGTTTTCAAGGGTGTGGGAG 58.672 55.000 0.00 0.00 0.00 4.30
6653 8747 0.673985 GTTTTCAAGGGTGTGGGAGC 59.326 55.000 0.00 0.00 0.00 4.70
6654 8748 0.821711 TTTTCAAGGGTGTGGGAGCG 60.822 55.000 0.00 0.00 0.00 5.03
6655 8749 1.701031 TTTCAAGGGTGTGGGAGCGA 61.701 55.000 0.00 0.00 0.00 4.93
6685 8779 7.382218 CCTGTCTTTGTGGCTTTATTTACTTTG 59.618 37.037 0.00 0.00 0.00 2.77
6708 8802 1.833630 TGATCTGAATCTGAGCGGGTT 59.166 47.619 1.26 0.00 32.75 4.11
6710 8804 2.099141 TCTGAATCTGAGCGGGTTTG 57.901 50.000 0.00 0.00 0.00 2.93
6711 8805 1.347707 TCTGAATCTGAGCGGGTTTGT 59.652 47.619 0.00 0.00 0.00 2.83
6714 8808 3.745799 TGAATCTGAGCGGGTTTGTAAA 58.254 40.909 0.00 0.00 0.00 2.01
6861 8955 6.126409 AGAAGGTTGAGTTGTGTTCCATTTA 58.874 36.000 0.00 0.00 0.00 1.40
6867 8967 7.040409 GGTTGAGTTGTGTTCCATTTATTCTCT 60.040 37.037 0.00 0.00 0.00 3.10
6868 8968 7.672983 TGAGTTGTGTTCCATTTATTCTCTC 57.327 36.000 0.00 0.00 0.00 3.20
6881 8995 9.605275 CCATTTATTCTCTCACTGAACTCATTA 57.395 33.333 0.00 0.00 0.00 1.90
6964 9080 2.258013 CGTGGGCATGTGGAACGTT 61.258 57.895 0.00 0.00 42.39 3.99
6965 9081 1.579429 GTGGGCATGTGGAACGTTC 59.421 57.895 20.14 20.14 42.39 3.95
7287 9407 5.819901 GTGCCAGCTTGATTCTTTCTACTAT 59.180 40.000 0.00 0.00 0.00 2.12
7357 9489 7.091443 AGCTTCGTTATTCCGATCCTTAATAG 58.909 38.462 0.00 0.00 36.62 1.73
7637 9794 1.992557 ACATGGCCCTTTCTGACCTTA 59.007 47.619 0.00 0.00 0.00 2.69
7640 9797 0.394488 GGCCCTTTCTGACCTTAGGC 60.394 60.000 0.00 0.00 38.21 3.93
7722 9908 3.558931 TCTTGAAGGCACTCACTCAAA 57.441 42.857 0.00 0.00 38.49 2.69
7822 10009 1.152881 CCTGGGAGGTAATGCAGCC 60.153 63.158 0.00 0.00 0.00 4.85
7844 10031 5.106357 GCCAGATTCAAGGTCTCTTTTCTTC 60.106 44.000 0.00 0.00 0.00 2.87
7847 10034 6.425114 CAGATTCAAGGTCTCTTTTCTTCGAA 59.575 38.462 0.00 0.00 0.00 3.71
7862 10049 6.879188 TTCTTCGAAATTGGTGTTTCAAAC 57.121 33.333 0.00 0.00 37.84 2.93
7916 10103 9.489084 TTTCGATCTATAATGGAGGTAACATTG 57.511 33.333 0.00 0.00 38.84 2.82
7917 10104 7.097192 TCGATCTATAATGGAGGTAACATTGC 58.903 38.462 0.00 0.00 38.84 3.56
7918 10105 6.313905 CGATCTATAATGGAGGTAACATTGCC 59.686 42.308 0.00 0.00 38.84 4.52
7919 10106 6.508030 TCTATAATGGAGGTAACATTGCCA 57.492 37.500 1.40 0.00 38.84 4.92
7920 10107 6.905736 TCTATAATGGAGGTAACATTGCCAA 58.094 36.000 1.40 0.00 38.84 4.52
7932 10125 9.218440 AGGTAACATTGCCAATGAAAATTTTAG 57.782 29.630 23.56 0.00 41.46 1.85
8019 11750 3.507162 TGAGCAAGACAAGGAATGGAA 57.493 42.857 0.00 0.00 0.00 3.53
8022 11753 4.263639 TGAGCAAGACAAGGAATGGAAGAT 60.264 41.667 0.00 0.00 0.00 2.40
8024 11755 3.129988 GCAAGACAAGGAATGGAAGATGG 59.870 47.826 0.00 0.00 0.00 3.51
8041 11772 6.404712 AAGATGGTATCTCGTTCGAAAAAC 57.595 37.500 0.00 0.00 39.08 2.43
8043 11774 4.261578 TGGTATCTCGTTCGAAAAACCT 57.738 40.909 0.00 0.00 0.00 3.50
8114 11845 4.927422 TCACGACAAAAATTCAAACTCCC 58.073 39.130 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.160496 GGGACAAATATTGATGCAAACAAATAA 57.840 29.630 12.36 4.07 30.45 1.40
84 86 1.975660 ACGTGCCTTTGTGTTACCAT 58.024 45.000 0.00 0.00 0.00 3.55
109 111 8.921205 GGATGGTGGGAGTATAATATAATACGT 58.079 37.037 0.00 0.00 37.41 3.57
110 112 8.365647 GGGATGGTGGGAGTATAATATAATACG 58.634 40.741 0.00 0.00 37.41 3.06
191 193 7.801893 TTTAAATAGTACCTTCTCAGTCCCA 57.198 36.000 0.00 0.00 0.00 4.37
250 255 1.702491 GGTGCATAACCGGACGAAGC 61.702 60.000 9.46 6.05 39.81 3.86
267 272 2.176798 TGAATGAAAGTGGTGGAAGGGT 59.823 45.455 0.00 0.00 0.00 4.34
270 275 3.490348 AGGTGAATGAAAGTGGTGGAAG 58.510 45.455 0.00 0.00 0.00 3.46
298 303 2.370849 GGAAGAGGGTGTGGTGAAACTA 59.629 50.000 0.00 0.00 36.74 2.24
315 320 1.550130 TACGGGGAAGGTGCAGGAAG 61.550 60.000 0.00 0.00 0.00 3.46
360 365 2.878406 AGTACAACTGGTGCACAATGTC 59.122 45.455 20.43 10.69 34.11 3.06
363 368 3.287222 AACAGTACAACTGGTGCACAAT 58.713 40.909 20.43 0.00 45.96 2.71
374 379 7.901874 TTTTGCGAGAAAATAACAGTACAAC 57.098 32.000 0.00 0.00 0.00 3.32
381 386 8.696410 AAGTTTCTTTTTGCGAGAAAATAACA 57.304 26.923 15.59 0.00 42.77 2.41
389 394 7.476667 TGTTTGATAAGTTTCTTTTTGCGAGA 58.523 30.769 0.00 0.00 0.00 4.04
390 395 7.678194 TGTTTGATAAGTTTCTTTTTGCGAG 57.322 32.000 0.00 0.00 0.00 5.03
391 396 8.641499 AATGTTTGATAAGTTTCTTTTTGCGA 57.359 26.923 0.00 0.00 0.00 5.10
599 650 0.097674 CAGTGTGCTAGATTTGGCGC 59.902 55.000 0.00 0.00 41.19 6.53
644 695 7.456269 AGGAATGAAATTGGTAAACCCACATTA 59.544 33.333 0.00 0.00 45.19 1.90
758 809 4.733165 AGGTAGTGTTGTGTGGTACTAGA 58.267 43.478 0.00 0.00 0.00 2.43
759 810 4.082354 GGAGGTAGTGTTGTGTGGTACTAG 60.082 50.000 0.00 0.00 0.00 2.57
760 811 3.828451 GGAGGTAGTGTTGTGTGGTACTA 59.172 47.826 0.00 0.00 0.00 1.82
761 812 2.631545 GGAGGTAGTGTTGTGTGGTACT 59.368 50.000 0.00 0.00 0.00 2.73
762 813 2.608752 CGGAGGTAGTGTTGTGTGGTAC 60.609 54.545 0.00 0.00 0.00 3.34
763 814 1.614903 CGGAGGTAGTGTTGTGTGGTA 59.385 52.381 0.00 0.00 0.00 3.25
764 815 0.391597 CGGAGGTAGTGTTGTGTGGT 59.608 55.000 0.00 0.00 0.00 4.16
765 816 0.949105 GCGGAGGTAGTGTTGTGTGG 60.949 60.000 0.00 0.00 0.00 4.17
766 817 0.033504 AGCGGAGGTAGTGTTGTGTG 59.966 55.000 0.00 0.00 35.08 3.82
924 1005 5.459831 GGAACTAGGATAGGGAAGGAGATGA 60.460 48.000 0.00 0.00 44.97 2.92
934 1015 5.403512 TGGAAGTATGGAACTAGGATAGGG 58.596 45.833 0.00 0.00 44.97 3.53
937 1018 6.558775 AGCAATGGAAGTATGGAACTAGGATA 59.441 38.462 0.00 0.00 37.50 2.59
974 1055 3.912907 CCGCACCGCCTACCTAGG 61.913 72.222 7.41 7.41 46.42 3.02
1155 1236 4.961730 AGAGAGAGAATAATGGACTGCACT 59.038 41.667 0.00 0.00 0.00 4.40
1161 1242 7.781056 AGAAGAACAGAGAGAGAATAATGGAC 58.219 38.462 0.00 0.00 0.00 4.02
1182 1263 3.367910 GGTGCCACAGTAGAGAGAAGAAG 60.368 52.174 0.00 0.00 0.00 2.85
1232 1315 8.804743 CAACAGATTTATTCATTCATTCAGCAC 58.195 33.333 0.00 0.00 0.00 4.40
1265 1348 4.210331 GGAACTGCCCATTGATCAGTATT 58.790 43.478 9.94 0.00 39.86 1.89
1380 1463 4.071961 TGGATGGATTCGTGAGTTATGG 57.928 45.455 0.00 0.00 0.00 2.74
1445 1544 4.330250 AGATATTCAATTGATGGCCGGAG 58.670 43.478 5.05 0.00 0.00 4.63
1473 1579 1.173043 CTTCTTTTGCGGGGCATACA 58.827 50.000 0.00 0.00 38.76 2.29
1507 1613 3.941483 ACATTGCCATACTCTTGTGCTAC 59.059 43.478 0.00 0.00 0.00 3.58
1600 1709 5.504665 GCATATCCAGTCCATCTTCAAAACG 60.505 44.000 0.00 0.00 0.00 3.60
1601 1710 5.591877 AGCATATCCAGTCCATCTTCAAAAC 59.408 40.000 0.00 0.00 0.00 2.43
1603 1712 5.378230 AGCATATCCAGTCCATCTTCAAA 57.622 39.130 0.00 0.00 0.00 2.69
1610 1719 1.202976 GGGCAAGCATATCCAGTCCAT 60.203 52.381 0.00 0.00 0.00 3.41
1613 1722 1.602311 CTGGGCAAGCATATCCAGTC 58.398 55.000 6.85 0.00 41.21 3.51
1655 1765 1.739562 CACTGAGGCAAGCTCGACC 60.740 63.158 0.00 0.00 0.00 4.79
1656 1766 0.243907 TACACTGAGGCAAGCTCGAC 59.756 55.000 0.00 0.00 0.00 4.20
1657 1767 0.243907 GTACACTGAGGCAAGCTCGA 59.756 55.000 0.00 0.00 0.00 4.04
1658 1768 0.737715 GGTACACTGAGGCAAGCTCG 60.738 60.000 0.00 0.00 0.00 5.03
1706 2329 9.538508 GGATTAGTCGGTGTAATAGTGTTAAAT 57.461 33.333 0.00 0.00 0.00 1.40
1872 2500 9.883142 GACAGACTAAAAGAGGTACTACTACTA 57.117 37.037 0.00 0.00 41.55 1.82
1873 2501 7.548780 CGACAGACTAAAAGAGGTACTACTACT 59.451 40.741 0.00 0.00 41.55 2.57
1874 2502 7.201600 CCGACAGACTAAAAGAGGTACTACTAC 60.202 44.444 0.00 0.00 41.55 2.73
1875 2503 6.820656 CCGACAGACTAAAAGAGGTACTACTA 59.179 42.308 0.00 0.00 41.55 1.82
1876 2504 5.647225 CCGACAGACTAAAAGAGGTACTACT 59.353 44.000 0.00 0.00 41.55 2.57
1930 2558 2.100605 AAAATGAGACGCACTCCCTC 57.899 50.000 7.56 0.00 44.34 4.30
1986 2619 5.593502 GTCCTACACAGGTATACTACTGCTT 59.406 44.000 2.25 0.00 43.18 3.91
1989 2622 6.602406 ACTTGTCCTACACAGGTATACTACTG 59.398 42.308 2.25 5.29 43.33 2.74
2101 2737 1.084289 AAAATAGCGCGTTGGTCCTC 58.916 50.000 8.43 0.00 0.00 3.71
2190 2827 5.592054 TCCTACAACTAGATCGCAAAGATG 58.408 41.667 0.00 0.00 40.26 2.90
2205 2842 1.131883 CATTGCTGCTGCTCCTACAAC 59.868 52.381 17.00 0.00 40.48 3.32
2207 2844 0.393402 CCATTGCTGCTGCTCCTACA 60.393 55.000 17.00 0.00 40.48 2.74
2241 3039 0.957395 CAACCCTTGTCTGATGCGCT 60.957 55.000 9.73 0.00 0.00 5.92
2423 3235 4.115199 GTACCTGCCCTGCCCCTG 62.115 72.222 0.00 0.00 0.00 4.45
2424 3236 4.675303 TGTACCTGCCCTGCCCCT 62.675 66.667 0.00 0.00 0.00 4.79
2425 3237 4.426313 GTGTACCTGCCCTGCCCC 62.426 72.222 0.00 0.00 0.00 5.80
2426 3238 4.426313 GGTGTACCTGCCCTGCCC 62.426 72.222 0.00 0.00 0.00 5.36
2427 3239 4.778143 CGGTGTACCTGCCCTGCC 62.778 72.222 0.00 0.00 0.00 4.85
2429 3241 3.329542 ATGCGGTGTACCTGCCCTG 62.330 63.158 11.24 0.00 35.64 4.45
2430 3242 3.009115 ATGCGGTGTACCTGCCCT 61.009 61.111 11.24 0.00 35.64 5.19
2518 3330 0.109153 CGCTGATCCATTCCATCCCA 59.891 55.000 0.00 0.00 0.00 4.37
2519 3331 1.239968 GCGCTGATCCATTCCATCCC 61.240 60.000 0.00 0.00 0.00 3.85
2520 3332 0.250640 AGCGCTGATCCATTCCATCC 60.251 55.000 10.39 0.00 0.00 3.51
2521 3333 1.534595 GAAGCGCTGATCCATTCCATC 59.465 52.381 12.58 0.00 0.00 3.51
2522 3334 1.602311 GAAGCGCTGATCCATTCCAT 58.398 50.000 12.58 0.00 0.00 3.41
2535 3347 1.142097 GTGAGGTAGAGGGAAGCGC 59.858 63.158 0.00 0.00 0.00 5.92
2536 3348 1.433879 CGTGAGGTAGAGGGAAGCG 59.566 63.158 0.00 0.00 0.00 4.68
2664 3476 3.918220 GCGCCGAATCTGCAGTCG 61.918 66.667 17.31 17.31 37.01 4.18
2727 3539 0.404426 GTGGGCTTAAACAGGAGGGT 59.596 55.000 0.00 0.00 0.00 4.34
2763 3576 4.279420 GGTGTCAGCTTTGAGGAAGAAAAT 59.721 41.667 0.00 0.00 37.57 1.82
2856 3675 9.430623 CCCCGAAATAACTGACATTTTTATTTT 57.569 29.630 9.34 0.00 36.17 1.82
2857 3676 8.808092 TCCCCGAAATAACTGACATTTTTATTT 58.192 29.630 8.34 8.34 37.86 1.40
2898 3717 2.783828 AGAATCTAGCGACACATCCG 57.216 50.000 0.00 0.00 0.00 4.18
2990 3818 3.637229 CCTACCGTCACTATCATGGTTCT 59.363 47.826 0.00 0.00 34.75 3.01
3055 3883 5.246307 GGTGCACCTAACTCTGTTTCTAAT 58.754 41.667 29.12 0.00 0.00 1.73
3152 3983 1.134995 TGCGACTCTCTGTGCTAATGG 60.135 52.381 0.00 0.00 0.00 3.16
3181 4012 1.421410 GGCTTGCGTGACCACTATCG 61.421 60.000 0.00 0.00 0.00 2.92
3205 5073 2.184322 CGCCCGTCTGTGTGCTAT 59.816 61.111 0.00 0.00 0.00 2.97
3232 5100 2.266279 AGCCCCTTTTCTGCTAGTGTA 58.734 47.619 0.00 0.00 32.56 2.90
3233 5101 1.068121 AGCCCCTTTTCTGCTAGTGT 58.932 50.000 0.00 0.00 32.56 3.55
3234 5102 2.206576 AAGCCCCTTTTCTGCTAGTG 57.793 50.000 0.00 0.00 34.29 2.74
3235 5103 2.893489 CAAAAGCCCCTTTTCTGCTAGT 59.107 45.455 0.28 0.00 41.05 2.57
3236 5104 2.893489 ACAAAAGCCCCTTTTCTGCTAG 59.107 45.455 0.28 0.00 41.05 3.42
3237 5105 2.890945 GACAAAAGCCCCTTTTCTGCTA 59.109 45.455 0.28 0.00 41.05 3.49
3238 5106 1.688735 GACAAAAGCCCCTTTTCTGCT 59.311 47.619 0.28 0.00 41.05 4.24
3239 5107 1.270305 GGACAAAAGCCCCTTTTCTGC 60.270 52.381 0.28 0.00 41.05 4.26
3240 5108 1.344438 GGGACAAAAGCCCCTTTTCTG 59.656 52.381 0.28 0.00 41.05 3.02
3241 5109 1.717032 GGGACAAAAGCCCCTTTTCT 58.283 50.000 0.28 0.00 41.05 2.52
3242 5110 0.317160 CGGGACAAAAGCCCCTTTTC 59.683 55.000 0.28 0.00 41.05 2.29
3290 5158 1.403780 CGACCCTTTAGTCCTGGTTCG 60.404 57.143 0.00 0.00 32.91 3.95
3296 5164 5.394993 GCATTACTAACGACCCTTTAGTCCT 60.395 44.000 0.00 0.00 39.82 3.85
3392 5260 2.027561 CACCAACCGGGACTAAAGATGA 60.028 50.000 6.32 0.00 41.15 2.92
3395 5263 1.426751 ACACCAACCGGGACTAAAGA 58.573 50.000 6.32 0.00 41.15 2.52
3607 5492 1.107945 GGCTGGAGTAGTGAGAGGAC 58.892 60.000 0.00 0.00 0.00 3.85
3992 5881 4.654262 AGATACGGGGCTTTTAAGATCTGA 59.346 41.667 0.00 0.00 0.00 3.27
4056 5947 3.275999 CATCCGAATTTAACCGAACCCT 58.724 45.455 0.00 0.00 0.00 4.34
4363 6272 2.092375 GGGCTTTGAGGCATTAGTACCT 60.092 50.000 3.87 0.00 43.44 3.08
4420 6330 0.250597 GCACCAACGGGACTAAAGGT 60.251 55.000 0.00 0.00 38.05 3.50
4421 6331 0.958876 GGCACCAACGGGACTAAAGG 60.959 60.000 0.00 0.00 38.05 3.11
4424 6334 1.071814 GTGGCACCAACGGGACTAA 59.928 57.895 6.29 0.00 38.05 2.24
4425 6335 2.745037 GTGGCACCAACGGGACTA 59.255 61.111 6.29 0.00 38.05 2.59
4426 6336 4.265056 GGTGGCACCAACGGGACT 62.265 66.667 31.26 0.00 38.42 3.85
4467 6431 0.604578 CACGAACCGGGACTAAAGGA 59.395 55.000 6.32 0.00 28.17 3.36
4553 6517 1.139058 ACCGGGACTAATGTGAGCATC 59.861 52.381 6.32 0.00 33.50 3.91
4620 6584 5.834742 TGTCTACCACTAGTACAAAACAGGA 59.165 40.000 0.00 0.00 0.00 3.86
4685 6649 7.390823 TCACCATTGCACTATCTTTTACTGTA 58.609 34.615 0.00 0.00 0.00 2.74
4686 6650 6.237901 TCACCATTGCACTATCTTTTACTGT 58.762 36.000 0.00 0.00 0.00 3.55
4687 6651 6.676456 GCTCACCATTGCACTATCTTTTACTG 60.676 42.308 0.00 0.00 0.00 2.74
4688 6652 5.355350 GCTCACCATTGCACTATCTTTTACT 59.645 40.000 0.00 0.00 0.00 2.24
4689 6653 5.123820 TGCTCACCATTGCACTATCTTTTAC 59.876 40.000 0.00 0.00 33.94 2.01
4735 6704 0.391597 TCTGGTCCGTGAACTTGTCC 59.608 55.000 0.00 0.00 0.00 4.02
4784 6754 7.592885 ACTTATTTACAGCGGGAGTATCTAA 57.407 36.000 0.00 0.00 33.73 2.10
4793 6763 6.220930 TGCTCTTATACTTATTTACAGCGGG 58.779 40.000 0.00 0.00 0.00 6.13
4794 6764 7.891183 ATGCTCTTATACTTATTTACAGCGG 57.109 36.000 0.00 0.00 0.00 5.52
4890 6860 9.777575 CTCCGTTCCATAATATAAAAACGTTTT 57.222 29.630 20.26 20.26 38.17 2.43
4891 6861 8.400186 CCTCCGTTCCATAATATAAAAACGTTT 58.600 33.333 7.96 7.96 38.17 3.60
4892 6862 7.012610 CCCTCCGTTCCATAATATAAAAACGTT 59.987 37.037 0.00 0.00 38.17 3.99
4893 6863 6.484308 CCCTCCGTTCCATAATATAAAAACGT 59.516 38.462 0.00 0.00 38.17 3.99
4894 6864 6.707161 TCCCTCCGTTCCATAATATAAAAACG 59.293 38.462 0.00 0.00 39.20 3.60
4895 6865 7.718314 ACTCCCTCCGTTCCATAATATAAAAAC 59.282 37.037 0.00 0.00 0.00 2.43
4896 6866 7.808218 ACTCCCTCCGTTCCATAATATAAAAA 58.192 34.615 0.00 0.00 0.00 1.94
4897 6867 7.383156 ACTCCCTCCGTTCCATAATATAAAA 57.617 36.000 0.00 0.00 0.00 1.52
4898 6868 7.731688 ACTACTCCCTCCGTTCCATAATATAAA 59.268 37.037 0.00 0.00 0.00 1.40
4899 6869 7.243824 ACTACTCCCTCCGTTCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
4900 6870 6.797707 ACTACTCCCTCCGTTCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
4901 6871 5.652324 ACTACTCCCTCCGTTCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
4902 6872 5.070823 ACTACTCCCTCCGTTCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
4903 6873 3.924922 ACTACTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
4904 6874 3.393426 ACTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
4905 6875 3.461085 ACTACTACTCCCTCCGTTCCATA 59.539 47.826 0.00 0.00 0.00 2.74
4906 6876 2.244252 ACTACTACTCCCTCCGTTCCAT 59.756 50.000 0.00 0.00 0.00 3.41
4907 6877 1.637553 ACTACTACTCCCTCCGTTCCA 59.362 52.381 0.00 0.00 0.00 3.53
4908 6878 2.433662 ACTACTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
4909 6879 5.189180 TCTTTACTACTACTCCCTCCGTTC 58.811 45.833 0.00 0.00 0.00 3.95
4910 6880 5.184892 TCTTTACTACTACTCCCTCCGTT 57.815 43.478 0.00 0.00 0.00 4.44
4911 6881 4.851639 TCTTTACTACTACTCCCTCCGT 57.148 45.455 0.00 0.00 0.00 4.69
4912 6882 5.704978 GGTATCTTTACTACTACTCCCTCCG 59.295 48.000 0.00 0.00 0.00 4.63
4913 6883 5.704978 CGGTATCTTTACTACTACTCCCTCC 59.295 48.000 0.00 0.00 0.00 4.30
4914 6884 5.181056 GCGGTATCTTTACTACTACTCCCTC 59.819 48.000 0.00 0.00 0.00 4.30
4915 6885 5.069318 GCGGTATCTTTACTACTACTCCCT 58.931 45.833 0.00 0.00 0.00 4.20
4916 6886 5.048852 CAGCGGTATCTTTACTACTACTCCC 60.049 48.000 0.00 0.00 0.00 4.30
4917 6887 5.530543 ACAGCGGTATCTTTACTACTACTCC 59.469 44.000 0.00 0.00 0.00 3.85
4918 6888 6.616774 ACAGCGGTATCTTTACTACTACTC 57.383 41.667 0.00 0.00 0.00 2.59
4919 6889 6.600822 TCAACAGCGGTATCTTTACTACTACT 59.399 38.462 0.00 0.00 0.00 2.57
4920 6890 6.789262 TCAACAGCGGTATCTTTACTACTAC 58.211 40.000 0.00 0.00 0.00 2.73
4921 6891 6.600822 ACTCAACAGCGGTATCTTTACTACTA 59.399 38.462 0.00 0.00 0.00 1.82
4922 6892 5.418209 ACTCAACAGCGGTATCTTTACTACT 59.582 40.000 0.00 0.00 0.00 2.57
4973 6947 2.152016 GAAACTTTGGCGCTCCTTACT 58.848 47.619 7.64 0.00 0.00 2.24
5171 7187 1.723542 CTCATCAGTTGTGCACGAGAC 59.276 52.381 13.13 10.79 0.00 3.36
5172 7188 1.337167 CCTCATCAGTTGTGCACGAGA 60.337 52.381 13.13 5.39 0.00 4.04
5173 7189 1.073964 CCTCATCAGTTGTGCACGAG 58.926 55.000 13.13 10.25 0.00 4.18
5174 7190 0.678950 TCCTCATCAGTTGTGCACGA 59.321 50.000 13.13 7.71 0.00 4.35
5176 7192 2.703416 TCATCCTCATCAGTTGTGCAC 58.297 47.619 10.75 10.75 0.00 4.57
5204 7220 1.664306 TTGCATTGCAACCATCGCA 59.336 47.368 19.77 3.11 43.99 5.10
5205 7221 4.575076 TTGCATTGCAACCATCGC 57.425 50.000 19.77 0.14 43.99 4.58
5219 7235 1.876714 CGCTCCTGCATTGCATTGC 60.877 57.895 23.33 23.33 43.07 3.56
5220 7236 1.226859 CCGCTCCTGCATTGCATTG 60.227 57.895 12.53 6.87 38.13 2.82
5221 7237 2.420568 CCCGCTCCTGCATTGCATT 61.421 57.895 12.53 0.00 38.13 3.56
5222 7238 2.831742 CCCGCTCCTGCATTGCAT 60.832 61.111 12.53 0.00 38.13 3.96
5240 7256 2.740826 GTTCCGCCGCTGCTGTAA 60.741 61.111 0.00 0.00 34.43 2.41
5317 7333 0.184451 CCTTGGCCTGCAGGATGTAT 59.816 55.000 37.21 0.00 39.31 2.29
5535 7551 6.393990 AGAATACTAATCTAATGCTCTGGCG 58.606 40.000 0.00 0.00 42.25 5.69
5738 7817 5.048713 GTCATTGGGAAACTGAATTCTCGTT 60.049 40.000 7.05 7.36 32.20 3.85
5755 7834 1.066858 ACTAGACCAGCACGTCATTGG 60.067 52.381 0.00 7.72 35.07 3.16
5756 7835 1.995484 CACTAGACCAGCACGTCATTG 59.005 52.381 0.00 0.00 35.07 2.82
5802 7886 3.486263 GGTACGTCATGCCTGCAC 58.514 61.111 0.00 0.00 0.00 4.57
5821 7905 1.076533 CGACGTTGGTGATCCGGAAG 61.077 60.000 9.01 0.00 36.30 3.46
5980 8064 4.069232 TCGAAGCCAGGCTGGTCG 62.069 66.667 30.30 30.30 39.62 4.79
6158 8242 5.330455 AGAAAGTGAACTGATGAGCGATA 57.670 39.130 0.00 0.00 0.00 2.92
6159 8243 4.199432 AGAAAGTGAACTGATGAGCGAT 57.801 40.909 0.00 0.00 0.00 4.58
6160 8244 3.667497 AGAAAGTGAACTGATGAGCGA 57.333 42.857 0.00 0.00 0.00 4.93
6161 8245 4.739046 AAAGAAAGTGAACTGATGAGCG 57.261 40.909 0.00 0.00 0.00 5.03
6162 8246 5.240403 AGGAAAAGAAAGTGAACTGATGAGC 59.760 40.000 0.00 0.00 0.00 4.26
6163 8247 6.874288 AGGAAAAGAAAGTGAACTGATGAG 57.126 37.500 0.00 0.00 0.00 2.90
6164 8248 7.509546 ACTAGGAAAAGAAAGTGAACTGATGA 58.490 34.615 0.00 0.00 0.00 2.92
6165 8249 7.736447 ACTAGGAAAAGAAAGTGAACTGATG 57.264 36.000 0.00 0.00 0.00 3.07
6169 8253 9.628500 ATTTGTACTAGGAAAAGAAAGTGAACT 57.372 29.630 0.00 0.00 0.00 3.01
6188 8274 7.544915 GGTTACAGTCCTAGTCTGAATTTGTAC 59.455 40.741 15.85 0.00 36.81 2.90
6243 8335 3.181469 GGTTCCATCTGGTTGCGAGTATA 60.181 47.826 0.00 0.00 36.34 1.47
6244 8336 2.420129 GGTTCCATCTGGTTGCGAGTAT 60.420 50.000 0.00 0.00 36.34 2.12
6637 8731 1.488705 ATCGCTCCCACACCCTTGAA 61.489 55.000 0.00 0.00 0.00 2.69
6638 8732 1.488705 AATCGCTCCCACACCCTTGA 61.489 55.000 0.00 0.00 0.00 3.02
6640 8734 0.322546 GAAATCGCTCCCACACCCTT 60.323 55.000 0.00 0.00 0.00 3.95
6641 8735 1.299976 GAAATCGCTCCCACACCCT 59.700 57.895 0.00 0.00 0.00 4.34
6642 8736 1.749258 GGAAATCGCTCCCACACCC 60.749 63.158 0.00 0.00 0.00 4.61
6643 8737 1.026718 CAGGAAATCGCTCCCACACC 61.027 60.000 0.00 0.00 35.95 4.16
6644 8738 0.321653 ACAGGAAATCGCTCCCACAC 60.322 55.000 0.00 0.00 35.95 3.82
6645 8739 0.036388 GACAGGAAATCGCTCCCACA 60.036 55.000 0.00 0.00 35.95 4.17
6646 8740 0.250513 AGACAGGAAATCGCTCCCAC 59.749 55.000 0.00 0.00 35.95 4.61
6649 8743 2.160417 CACAAAGACAGGAAATCGCTCC 59.840 50.000 0.00 0.00 35.51 4.70
6650 8744 2.160417 CCACAAAGACAGGAAATCGCTC 59.840 50.000 0.00 0.00 0.00 5.03
6651 8745 2.154462 CCACAAAGACAGGAAATCGCT 58.846 47.619 0.00 0.00 0.00 4.93
6652 8746 1.401539 GCCACAAAGACAGGAAATCGC 60.402 52.381 0.00 0.00 0.00 4.58
6653 8747 2.154462 AGCCACAAAGACAGGAAATCG 58.846 47.619 0.00 0.00 0.00 3.34
6654 8748 4.590850 AAAGCCACAAAGACAGGAAATC 57.409 40.909 0.00 0.00 0.00 2.17
6655 8749 6.670695 AATAAAGCCACAAAGACAGGAAAT 57.329 33.333 0.00 0.00 0.00 2.17
6685 8779 1.539929 CCGCTCAGATTCAGATCACCC 60.540 57.143 0.00 0.00 34.60 4.61
6710 8804 9.153721 TCCATTCATTCTGCATCAAAAATTTAC 57.846 29.630 0.00 0.00 0.00 2.01
6711 8805 9.373603 CTCCATTCATTCTGCATCAAAAATTTA 57.626 29.630 0.00 0.00 0.00 1.40
6714 8808 6.155565 TCCTCCATTCATTCTGCATCAAAAAT 59.844 34.615 0.00 0.00 0.00 1.82
6861 8955 7.601886 CACAAGTAATGAGTTCAGTGAGAGAAT 59.398 37.037 0.00 0.00 0.00 2.40
6867 8967 4.511454 GCACACAAGTAATGAGTTCAGTGA 59.489 41.667 0.00 0.00 29.72 3.41
6868 8968 4.609113 CGCACACAAGTAATGAGTTCAGTG 60.609 45.833 0.00 0.00 29.72 3.66
6898 9014 1.481772 CATGCATTGGGGTAAACCTGG 59.518 52.381 0.00 0.00 40.03 4.45
6964 9080 2.833582 GCCCAGGTCTCCGATCGA 60.834 66.667 18.66 1.60 0.00 3.59
6965 9081 3.917760 GGCCCAGGTCTCCGATCG 61.918 72.222 8.51 8.51 0.00 3.69
6997 9113 1.811679 GCGGAGGTAGAACTGCTGC 60.812 63.158 0.00 0.00 35.76 5.25
7287 9407 8.437274 AATTATACCCACCACCAAAACAATTA 57.563 30.769 0.00 0.00 0.00 1.40
7637 9794 0.547712 TCTAACCCAGCTTGGAGCCT 60.548 55.000 11.55 0.00 43.77 4.58
7640 9797 4.335416 TCAAATTCTAACCCAGCTTGGAG 58.665 43.478 11.55 0.00 40.96 3.86
7722 9908 4.640771 TGTGCTACCAGGAAGAATTCTT 57.359 40.909 20.60 20.60 46.56 2.52
7791 9978 1.415659 CTCCCAGGCAGGATTGTAGAG 59.584 57.143 0.00 0.00 41.22 2.43
7822 10009 5.928839 TCGAAGAAAAGAGACCTTGAATCTG 59.071 40.000 0.00 0.00 31.91 2.90
7844 10031 5.682862 CAGAGAGTTTGAAACACCAATTTCG 59.317 40.000 11.02 0.00 40.79 3.46
7847 10034 6.332630 CAACAGAGAGTTTGAAACACCAATT 58.667 36.000 11.02 0.00 38.74 2.32
7862 10049 2.847327 TCCTTGGAAGCAACAGAGAG 57.153 50.000 0.00 0.00 0.00 3.20
7915 10102 8.674263 AATGAACACTAAAATTTTCATTGGCA 57.326 26.923 6.72 6.65 43.66 4.92
7916 10103 9.597999 GAAATGAACACTAAAATTTTCATTGGC 57.402 29.630 6.72 3.33 44.24 4.52
7932 10125 3.554960 GCCCCAAAGGAAGAAATGAACAC 60.555 47.826 0.00 0.00 38.24 3.32
8019 11750 4.868734 GGTTTTTCGAACGAGATACCATCT 59.131 41.667 17.11 0.00 43.70 2.90
8022 11753 4.261578 AGGTTTTTCGAACGAGATACCA 57.738 40.909 21.35 0.00 34.46 3.25
8024 11755 5.178067 TGGAAAGGTTTTTCGAACGAGATAC 59.822 40.000 0.00 0.00 42.93 2.24
8041 11772 3.658757 TCCGCAAAAGATTTGGAAAGG 57.341 42.857 5.12 0.00 0.00 3.11
8043 11774 4.599047 ACATCCGCAAAAGATTTGGAAA 57.401 36.364 5.12 0.00 31.42 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.