Multiple sequence alignment - TraesCS2D01G230700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G230700 chr2D 100.000 5721 0 0 775 6495 201837487 201831767 0.000000e+00 10565.0
1 TraesCS2D01G230700 chr2D 100.000 496 0 0 1 496 201838261 201837766 0.000000e+00 917.0
2 TraesCS2D01G230700 chr2D 88.235 85 8 2 5654 5738 118896007 118895925 4.140000e-17 100.0
3 TraesCS2D01G230700 chr2A 96.805 4695 126 15 852 5531 224918654 224913969 0.000000e+00 7817.0
4 TraesCS2D01G230700 chr2A 89.036 985 61 20 5540 6495 224913906 224912940 0.000000e+00 1177.0
5 TraesCS2D01G230700 chr2A 88.163 245 26 3 181 425 225105940 225105699 8.240000e-74 289.0
6 TraesCS2D01G230700 chr2A 94.805 77 1 2 777 850 224918890 224918814 4.110000e-22 117.0
7 TraesCS2D01G230700 chr2A 92.000 75 5 1 37 111 225118350 225118277 3.200000e-18 104.0
8 TraesCS2D01G230700 chr2B 95.457 2179 83 12 1785 3956 378438899 378436730 0.000000e+00 3461.0
9 TraesCS2D01G230700 chr2B 95.823 1580 58 5 3955 5531 378436648 378435074 0.000000e+00 2545.0
10 TraesCS2D01G230700 chr2B 94.266 872 41 7 870 1737 378439772 378438906 0.000000e+00 1325.0
11 TraesCS2D01G230700 chr2B 91.311 702 30 11 5808 6494 378434721 378434036 0.000000e+00 929.0
12 TraesCS2D01G230700 chr3D 83.125 160 25 2 5599 5757 594491411 594491253 1.890000e-30 145.0
13 TraesCS2D01G230700 chr3B 89.216 102 10 1 5656 5757 685389008 685389108 6.840000e-25 126.0
14 TraesCS2D01G230700 chr4D 79.394 165 17 10 5593 5757 503964132 503964279 4.140000e-17 100.0
15 TraesCS2D01G230700 chr6D 77.931 145 31 1 5593 5737 444089215 444089072 8.970000e-14 89.8
16 TraesCS2D01G230700 chr6D 80.519 77 11 4 5594 5669 242789854 242789781 1.000000e-03 56.5
17 TraesCS2D01G230700 chr5D 77.193 171 23 14 5540 5700 28727170 28727006 1.160000e-12 86.1
18 TraesCS2D01G230700 chr7B 81.553 103 12 6 1730 1825 63139972 63140074 1.940000e-10 78.7
19 TraesCS2D01G230700 chrUn 92.308 52 3 1 1777 1827 293280946 293280895 9.030000e-09 73.1
20 TraesCS2D01G230700 chr7D 82.927 82 11 3 5676 5757 116882025 116881947 3.250000e-08 71.3
21 TraesCS2D01G230700 chr7D 91.111 45 2 2 1785 1828 268843899 268843856 7.030000e-05 60.2
22 TraesCS2D01G230700 chr1D 90.909 44 2 2 1787 1829 101291219 101291261 2.530000e-04 58.4
23 TraesCS2D01G230700 chr1B 89.362 47 3 2 1784 1829 150361146 150361101 2.530000e-04 58.4
24 TraesCS2D01G230700 chr1A 90.909 44 2 2 1787 1829 104210565 104210523 2.530000e-04 58.4
25 TraesCS2D01G230700 chr5A 77.228 101 17 6 1727 1826 617257229 617257324 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G230700 chr2D 201831767 201838261 6494 True 5741 10565 100.000000 1 6495 2 chr2D.!!$R2 6494
1 TraesCS2D01G230700 chr2A 224912940 224918890 5950 True 3037 7817 93.548667 777 6495 3 chr2A.!!$R3 5718
2 TraesCS2D01G230700 chr2B 378434036 378439772 5736 True 2065 3461 94.214250 870 6494 4 chr2B.!!$R1 5624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 456 0.106519 ACAAGAGCAGCCCAACAACT 60.107 50.0 0.00 0.0 0.00 3.16 F
476 477 0.250901 GGTCTGGTGCACTGGTCATT 60.251 55.0 17.98 0.0 0.00 2.57 F
1653 1830 0.257328 TGACCCTGTTCTTGTGGCAA 59.743 50.0 0.00 0.0 0.00 4.52 F
2486 2664 0.322906 GTCCTTTCCCCCAGCTTCAG 60.323 60.0 0.00 0.0 0.00 3.02 F
4373 4640 0.674895 GTGGCAGGCTAAGTGACAGG 60.675 60.0 0.00 0.0 32.01 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2401 2579 0.105039 CGTCTGCTGAGGGGATTACC 59.895 60.000 5.47 0.0 39.11 2.85 R
2486 2664 5.154222 GGCTGCAATCAACTGTTTAACTAC 58.846 41.667 0.50 0.0 0.00 2.73 R
3162 3343 2.493278 GCAGCATGTCCAAACAATAGGT 59.507 45.455 0.00 0.0 39.30 3.08 R
4405 4672 0.178068 GCGAGCAACCATAGGGAAGA 59.822 55.000 0.00 0.0 38.05 2.87 R
6003 6442 0.179100 CCTCGCGGTTCACTGATCAT 60.179 55.000 6.13 0.0 0.00 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.257561 CGCAGGATCGACCGCTTG 61.258 66.667 0.00 0.00 44.74 4.01
21 22 3.567797 GCAGGATCGACCGCTTGC 61.568 66.667 3.72 3.72 44.74 4.01
22 23 2.125552 CAGGATCGACCGCTTGCA 60.126 61.111 0.00 0.00 44.74 4.08
23 24 1.741401 CAGGATCGACCGCTTGCAA 60.741 57.895 0.00 0.00 44.74 4.08
24 25 1.091771 CAGGATCGACCGCTTGCAAT 61.092 55.000 0.00 0.00 44.74 3.56
25 26 0.392998 AGGATCGACCGCTTGCAATT 60.393 50.000 0.00 0.00 44.74 2.32
26 27 0.451783 GGATCGACCGCTTGCAATTT 59.548 50.000 0.00 0.00 0.00 1.82
27 28 1.135402 GGATCGACCGCTTGCAATTTT 60.135 47.619 0.00 0.00 0.00 1.82
28 29 2.595386 GATCGACCGCTTGCAATTTTT 58.405 42.857 0.00 0.00 0.00 1.94
55 56 4.499037 AGAAACTAAATCAAACGGTGGC 57.501 40.909 0.00 0.00 0.00 5.01
56 57 3.886505 AGAAACTAAATCAAACGGTGGCA 59.113 39.130 0.00 0.00 0.00 4.92
57 58 4.339814 AGAAACTAAATCAAACGGTGGCAA 59.660 37.500 0.00 0.00 0.00 4.52
58 59 4.657436 AACTAAATCAAACGGTGGCAAA 57.343 36.364 0.00 0.00 0.00 3.68
59 60 4.864704 ACTAAATCAAACGGTGGCAAAT 57.135 36.364 0.00 0.00 0.00 2.32
60 61 5.208463 ACTAAATCAAACGGTGGCAAATT 57.792 34.783 0.00 0.00 0.00 1.82
61 62 5.606505 ACTAAATCAAACGGTGGCAAATTT 58.393 33.333 0.00 0.00 0.00 1.82
62 63 6.750148 ACTAAATCAAACGGTGGCAAATTTA 58.250 32.000 0.00 0.00 0.00 1.40
63 64 6.866248 ACTAAATCAAACGGTGGCAAATTTAG 59.134 34.615 6.14 6.14 36.87 1.85
64 65 5.461032 AATCAAACGGTGGCAAATTTAGA 57.539 34.783 0.00 0.00 0.00 2.10
65 66 5.659440 ATCAAACGGTGGCAAATTTAGAT 57.341 34.783 0.00 0.00 0.00 1.98
66 67 6.767524 ATCAAACGGTGGCAAATTTAGATA 57.232 33.333 0.00 0.00 0.00 1.98
67 68 6.576662 TCAAACGGTGGCAAATTTAGATAA 57.423 33.333 0.00 0.00 0.00 1.75
68 69 6.616947 TCAAACGGTGGCAAATTTAGATAAG 58.383 36.000 0.00 0.00 0.00 1.73
69 70 6.431543 TCAAACGGTGGCAAATTTAGATAAGA 59.568 34.615 0.00 0.00 0.00 2.10
70 71 5.813080 ACGGTGGCAAATTTAGATAAGAC 57.187 39.130 0.00 0.00 0.00 3.01
71 72 4.638865 ACGGTGGCAAATTTAGATAAGACC 59.361 41.667 0.00 0.00 0.00 3.85
72 73 4.638421 CGGTGGCAAATTTAGATAAGACCA 59.362 41.667 0.00 0.00 0.00 4.02
73 74 5.448632 CGGTGGCAAATTTAGATAAGACCAC 60.449 44.000 0.00 0.00 43.36 4.16
74 75 5.652452 GGTGGCAAATTTAGATAAGACCACT 59.348 40.000 8.12 0.00 43.55 4.00
75 76 6.152831 GGTGGCAAATTTAGATAAGACCACTT 59.847 38.462 8.12 0.00 43.55 3.16
76 77 7.309805 GGTGGCAAATTTAGATAAGACCACTTT 60.310 37.037 8.12 0.00 43.55 2.66
77 78 7.755373 GTGGCAAATTTAGATAAGACCACTTTC 59.245 37.037 0.00 0.00 41.40 2.62
78 79 7.093945 TGGCAAATTTAGATAAGACCACTTTCC 60.094 37.037 0.00 0.00 37.53 3.13
79 80 6.967199 GCAAATTTAGATAAGACCACTTTCCG 59.033 38.462 0.00 0.00 37.53 4.30
80 81 7.361799 GCAAATTTAGATAAGACCACTTTCCGT 60.362 37.037 0.00 0.00 37.53 4.69
81 82 9.158233 CAAATTTAGATAAGACCACTTTCCGTA 57.842 33.333 0.00 0.00 37.53 4.02
82 83 9.901172 AAATTTAGATAAGACCACTTTCCGTAT 57.099 29.630 0.00 0.00 37.53 3.06
88 89 9.901172 AGATAAGACCACTTTCCGTATAAAAAT 57.099 29.630 0.00 0.00 37.53 1.82
120 121 9.844790 CATGAATTTAGAAGATGCTTACAAACA 57.155 29.630 0.00 0.00 0.00 2.83
260 261 5.731957 AAAACAAGGTGGTTTACAAGTGT 57.268 34.783 0.00 0.00 35.15 3.55
261 262 5.731957 AAACAAGGTGGTTTACAAGTGTT 57.268 34.783 0.00 0.00 39.10 3.32
262 263 5.731957 AACAAGGTGGTTTACAAGTGTTT 57.268 34.783 0.00 0.00 29.92 2.83
263 264 5.731957 ACAAGGTGGTTTACAAGTGTTTT 57.268 34.783 0.00 0.00 0.00 2.43
264 265 5.716094 ACAAGGTGGTTTACAAGTGTTTTC 58.284 37.500 0.00 0.00 0.00 2.29
265 266 4.994907 AGGTGGTTTACAAGTGTTTTCC 57.005 40.909 0.00 0.00 0.00 3.13
266 267 4.606210 AGGTGGTTTACAAGTGTTTTCCT 58.394 39.130 0.00 0.00 0.00 3.36
267 268 5.757988 AGGTGGTTTACAAGTGTTTTCCTA 58.242 37.500 0.00 0.00 0.00 2.94
268 269 6.370453 AGGTGGTTTACAAGTGTTTTCCTAT 58.630 36.000 0.00 0.00 0.00 2.57
269 270 7.519927 AGGTGGTTTACAAGTGTTTTCCTATA 58.480 34.615 0.00 0.00 0.00 1.31
270 271 8.000127 AGGTGGTTTACAAGTGTTTTCCTATAA 59.000 33.333 0.00 0.00 0.00 0.98
271 272 8.631797 GGTGGTTTACAAGTGTTTTCCTATAAA 58.368 33.333 0.00 0.00 0.00 1.40
279 280 9.403583 ACAAGTGTTTTCCTATAAAAGACAAGA 57.596 29.630 11.52 0.00 36.30 3.02
288 289 9.793259 TTCCTATAAAAGACAAGAATCACAAGT 57.207 29.630 0.00 0.00 0.00 3.16
332 333 9.502091 TGTGAAAAACATGTAATTAGTAGCTCT 57.498 29.630 0.00 0.00 32.36 4.09
333 334 9.974750 GTGAAAAACATGTAATTAGTAGCTCTC 57.025 33.333 0.00 0.00 0.00 3.20
334 335 9.944376 TGAAAAACATGTAATTAGTAGCTCTCT 57.056 29.630 0.00 0.00 0.00 3.10
337 338 9.810545 AAAACATGTAATTAGTAGCTCTCTCTC 57.189 33.333 0.00 0.00 0.00 3.20
338 339 8.760980 AACATGTAATTAGTAGCTCTCTCTCT 57.239 34.615 0.00 0.00 0.00 3.10
339 340 8.760980 ACATGTAATTAGTAGCTCTCTCTCTT 57.239 34.615 0.00 0.00 0.00 2.85
340 341 9.196139 ACATGTAATTAGTAGCTCTCTCTCTTT 57.804 33.333 0.00 0.00 0.00 2.52
341 342 9.677567 CATGTAATTAGTAGCTCTCTCTCTTTC 57.322 37.037 0.00 0.00 0.00 2.62
342 343 9.640952 ATGTAATTAGTAGCTCTCTCTCTTTCT 57.359 33.333 0.00 0.00 0.00 2.52
343 344 8.898761 TGTAATTAGTAGCTCTCTCTCTTTCTG 58.101 37.037 0.00 0.00 0.00 3.02
344 345 6.959639 ATTAGTAGCTCTCTCTCTTTCTGG 57.040 41.667 0.00 0.00 0.00 3.86
345 346 4.316025 AGTAGCTCTCTCTCTTTCTGGT 57.684 45.455 0.00 0.00 0.00 4.00
346 347 4.672899 AGTAGCTCTCTCTCTTTCTGGTT 58.327 43.478 0.00 0.00 0.00 3.67
347 348 5.822204 AGTAGCTCTCTCTCTTTCTGGTTA 58.178 41.667 0.00 0.00 0.00 2.85
348 349 5.650703 AGTAGCTCTCTCTCTTTCTGGTTAC 59.349 44.000 0.00 0.00 0.00 2.50
349 350 4.672899 AGCTCTCTCTCTTTCTGGTTACT 58.327 43.478 0.00 0.00 0.00 2.24
350 351 4.462483 AGCTCTCTCTCTTTCTGGTTACTG 59.538 45.833 0.00 0.00 0.00 2.74
351 352 4.219725 GCTCTCTCTCTTTCTGGTTACTGT 59.780 45.833 0.00 0.00 0.00 3.55
352 353 5.621329 GCTCTCTCTCTTTCTGGTTACTGTC 60.621 48.000 0.00 0.00 0.00 3.51
353 354 4.767928 TCTCTCTCTTTCTGGTTACTGTCC 59.232 45.833 0.00 0.00 0.00 4.02
354 355 4.480115 TCTCTCTTTCTGGTTACTGTCCA 58.520 43.478 0.00 0.00 0.00 4.02
355 356 4.899457 TCTCTCTTTCTGGTTACTGTCCAA 59.101 41.667 0.00 0.00 34.35 3.53
356 357 5.365605 TCTCTCTTTCTGGTTACTGTCCAAA 59.634 40.000 0.00 0.00 34.35 3.28
357 358 6.043243 TCTCTCTTTCTGGTTACTGTCCAAAT 59.957 38.462 0.00 0.00 34.35 2.32
358 359 7.234782 TCTCTCTTTCTGGTTACTGTCCAAATA 59.765 37.037 0.00 0.00 34.35 1.40
359 360 7.741785 TCTCTTTCTGGTTACTGTCCAAATAA 58.258 34.615 0.00 0.00 34.35 1.40
360 361 8.215050 TCTCTTTCTGGTTACTGTCCAAATAAA 58.785 33.333 0.00 0.00 34.35 1.40
361 362 8.934023 TCTTTCTGGTTACTGTCCAAATAAAT 57.066 30.769 0.00 0.00 34.35 1.40
372 373 8.293114 ACTGTCCAAATAAATAAAAACAAGCG 57.707 30.769 0.00 0.00 0.00 4.68
373 374 8.138712 ACTGTCCAAATAAATAAAAACAAGCGA 58.861 29.630 0.00 0.00 0.00 4.93
374 375 8.873215 TGTCCAAATAAATAAAAACAAGCGAA 57.127 26.923 0.00 0.00 0.00 4.70
375 376 9.482627 TGTCCAAATAAATAAAAACAAGCGAAT 57.517 25.926 0.00 0.00 0.00 3.34
384 385 9.946165 AAATAAAAACAAGCGAATACTATAGCC 57.054 29.630 0.00 0.00 0.00 3.93
385 386 6.373186 AAAAACAAGCGAATACTATAGCCC 57.627 37.500 0.00 0.00 0.00 5.19
386 387 4.682778 AACAAGCGAATACTATAGCCCA 57.317 40.909 0.00 0.00 0.00 5.36
387 388 4.682778 ACAAGCGAATACTATAGCCCAA 57.317 40.909 0.00 0.00 0.00 4.12
388 389 4.377897 ACAAGCGAATACTATAGCCCAAC 58.622 43.478 0.00 0.00 0.00 3.77
389 390 4.141801 ACAAGCGAATACTATAGCCCAACA 60.142 41.667 0.00 0.00 0.00 3.33
390 391 4.258702 AGCGAATACTATAGCCCAACAG 57.741 45.455 0.00 0.00 0.00 3.16
391 392 3.895656 AGCGAATACTATAGCCCAACAGA 59.104 43.478 0.00 0.00 0.00 3.41
392 393 4.021894 AGCGAATACTATAGCCCAACAGAG 60.022 45.833 0.00 0.00 0.00 3.35
393 394 4.022242 GCGAATACTATAGCCCAACAGAGA 60.022 45.833 0.00 0.00 0.00 3.10
394 395 5.462405 CGAATACTATAGCCCAACAGAGAC 58.538 45.833 0.00 0.00 0.00 3.36
395 396 5.009710 CGAATACTATAGCCCAACAGAGACA 59.990 44.000 0.00 0.00 0.00 3.41
396 397 6.412362 AATACTATAGCCCAACAGAGACAG 57.588 41.667 0.00 0.00 0.00 3.51
397 398 3.982516 ACTATAGCCCAACAGAGACAGA 58.017 45.455 0.00 0.00 0.00 3.41
398 399 4.353777 ACTATAGCCCAACAGAGACAGAA 58.646 43.478 0.00 0.00 0.00 3.02
399 400 4.777896 ACTATAGCCCAACAGAGACAGAAA 59.222 41.667 0.00 0.00 0.00 2.52
400 401 4.640771 ATAGCCCAACAGAGACAGAAAA 57.359 40.909 0.00 0.00 0.00 2.29
401 402 3.297134 AGCCCAACAGAGACAGAAAAA 57.703 42.857 0.00 0.00 0.00 1.94
402 403 2.952310 AGCCCAACAGAGACAGAAAAAC 59.048 45.455 0.00 0.00 0.00 2.43
403 404 2.687935 GCCCAACAGAGACAGAAAAACA 59.312 45.455 0.00 0.00 0.00 2.83
404 405 3.489229 GCCCAACAGAGACAGAAAAACAC 60.489 47.826 0.00 0.00 0.00 3.32
405 406 3.066760 CCCAACAGAGACAGAAAAACACC 59.933 47.826 0.00 0.00 0.00 4.16
406 407 3.694072 CCAACAGAGACAGAAAAACACCA 59.306 43.478 0.00 0.00 0.00 4.17
407 408 4.201950 CCAACAGAGACAGAAAAACACCAG 60.202 45.833 0.00 0.00 0.00 4.00
408 409 4.222124 ACAGAGACAGAAAAACACCAGT 57.778 40.909 0.00 0.00 0.00 4.00
409 410 5.353394 ACAGAGACAGAAAAACACCAGTA 57.647 39.130 0.00 0.00 0.00 2.74
410 411 5.741011 ACAGAGACAGAAAAACACCAGTAA 58.259 37.500 0.00 0.00 0.00 2.24
411 412 6.177610 ACAGAGACAGAAAAACACCAGTAAA 58.822 36.000 0.00 0.00 0.00 2.01
412 413 6.657541 ACAGAGACAGAAAAACACCAGTAAAA 59.342 34.615 0.00 0.00 0.00 1.52
413 414 7.175990 ACAGAGACAGAAAAACACCAGTAAAAA 59.824 33.333 0.00 0.00 0.00 1.94
436 437 7.669089 AAAAAGGAACATGAGACCCTAAAAA 57.331 32.000 0.00 0.00 0.00 1.94
437 438 6.650427 AAAGGAACATGAGACCCTAAAAAC 57.350 37.500 0.00 0.00 0.00 2.43
438 439 5.319043 AGGAACATGAGACCCTAAAAACA 57.681 39.130 0.00 0.00 0.00 2.83
439 440 5.701224 AGGAACATGAGACCCTAAAAACAA 58.299 37.500 0.00 0.00 0.00 2.83
440 441 5.770162 AGGAACATGAGACCCTAAAAACAAG 59.230 40.000 0.00 0.00 0.00 3.16
441 442 5.768164 GGAACATGAGACCCTAAAAACAAGA 59.232 40.000 0.00 0.00 0.00 3.02
442 443 6.072452 GGAACATGAGACCCTAAAAACAAGAG 60.072 42.308 0.00 0.00 0.00 2.85
443 444 4.762251 ACATGAGACCCTAAAAACAAGAGC 59.238 41.667 0.00 0.00 0.00 4.09
444 445 4.431416 TGAGACCCTAAAAACAAGAGCA 57.569 40.909 0.00 0.00 0.00 4.26
445 446 4.389374 TGAGACCCTAAAAACAAGAGCAG 58.611 43.478 0.00 0.00 0.00 4.24
446 447 3.149981 AGACCCTAAAAACAAGAGCAGC 58.850 45.455 0.00 0.00 0.00 5.25
447 448 2.229062 GACCCTAAAAACAAGAGCAGCC 59.771 50.000 0.00 0.00 0.00 4.85
448 449 1.546029 CCCTAAAAACAAGAGCAGCCC 59.454 52.381 0.00 0.00 0.00 5.19
449 450 2.238521 CCTAAAAACAAGAGCAGCCCA 58.761 47.619 0.00 0.00 0.00 5.36
450 451 2.627699 CCTAAAAACAAGAGCAGCCCAA 59.372 45.455 0.00 0.00 0.00 4.12
451 452 2.602257 AAAAACAAGAGCAGCCCAAC 57.398 45.000 0.00 0.00 0.00 3.77
452 453 1.484038 AAAACAAGAGCAGCCCAACA 58.516 45.000 0.00 0.00 0.00 3.33
453 454 1.484038 AAACAAGAGCAGCCCAACAA 58.516 45.000 0.00 0.00 0.00 2.83
454 455 0.746659 AACAAGAGCAGCCCAACAAC 59.253 50.000 0.00 0.00 0.00 3.32
455 456 0.106519 ACAAGAGCAGCCCAACAACT 60.107 50.000 0.00 0.00 0.00 3.16
456 457 0.595095 CAAGAGCAGCCCAACAACTC 59.405 55.000 0.00 0.00 0.00 3.01
457 458 0.886490 AAGAGCAGCCCAACAACTCG 60.886 55.000 0.00 0.00 32.60 4.18
458 459 2.281761 AGCAGCCCAACAACTCGG 60.282 61.111 0.00 0.00 0.00 4.63
459 460 2.594592 GCAGCCCAACAACTCGGT 60.595 61.111 0.00 0.00 0.00 4.69
460 461 2.617274 GCAGCCCAACAACTCGGTC 61.617 63.158 0.00 0.00 0.00 4.79
461 462 1.071471 CAGCCCAACAACTCGGTCT 59.929 57.895 0.00 0.00 0.00 3.85
462 463 1.071471 AGCCCAACAACTCGGTCTG 59.929 57.895 0.00 0.00 0.00 3.51
463 464 1.966451 GCCCAACAACTCGGTCTGG 60.966 63.158 0.00 0.00 0.00 3.86
464 465 1.450211 CCCAACAACTCGGTCTGGT 59.550 57.895 0.00 0.00 0.00 4.00
465 466 0.884704 CCCAACAACTCGGTCTGGTG 60.885 60.000 0.00 0.00 0.00 4.17
466 467 1.507141 CCAACAACTCGGTCTGGTGC 61.507 60.000 0.00 0.00 0.00 5.01
467 468 0.813610 CAACAACTCGGTCTGGTGCA 60.814 55.000 0.00 0.00 0.00 4.57
468 469 0.814010 AACAACTCGGTCTGGTGCAC 60.814 55.000 8.80 8.80 0.00 4.57
469 470 1.069765 CAACTCGGTCTGGTGCACT 59.930 57.895 17.98 0.00 0.00 4.40
470 471 1.069765 AACTCGGTCTGGTGCACTG 59.930 57.895 17.98 10.30 0.00 3.66
471 472 2.047844 CTCGGTCTGGTGCACTGG 60.048 66.667 17.98 9.89 0.00 4.00
472 473 2.842462 TCGGTCTGGTGCACTGGT 60.842 61.111 17.98 0.00 0.00 4.00
473 474 2.357517 CGGTCTGGTGCACTGGTC 60.358 66.667 17.98 7.45 0.00 4.02
474 475 2.828868 GGTCTGGTGCACTGGTCA 59.171 61.111 17.98 5.01 0.00 4.02
475 476 1.376466 GGTCTGGTGCACTGGTCAT 59.624 57.895 17.98 0.00 0.00 3.06
476 477 0.250901 GGTCTGGTGCACTGGTCATT 60.251 55.000 17.98 0.00 0.00 2.57
477 478 1.609208 GTCTGGTGCACTGGTCATTT 58.391 50.000 17.98 0.00 0.00 2.32
478 479 1.537202 GTCTGGTGCACTGGTCATTTC 59.463 52.381 17.98 0.00 0.00 2.17
479 480 1.142667 TCTGGTGCACTGGTCATTTCA 59.857 47.619 17.98 1.48 0.00 2.69
480 481 1.955778 CTGGTGCACTGGTCATTTCAA 59.044 47.619 17.98 0.00 0.00 2.69
481 482 2.361757 CTGGTGCACTGGTCATTTCAAA 59.638 45.455 17.98 0.00 0.00 2.69
482 483 2.762887 TGGTGCACTGGTCATTTCAAAA 59.237 40.909 17.98 0.00 0.00 2.44
483 484 3.123050 GGTGCACTGGTCATTTCAAAAC 58.877 45.455 17.98 0.00 0.00 2.43
484 485 2.788786 GTGCACTGGTCATTTCAAAACG 59.211 45.455 10.32 0.00 0.00 3.60
485 486 2.425312 TGCACTGGTCATTTCAAAACGT 59.575 40.909 0.00 0.00 0.00 3.99
486 487 3.119316 TGCACTGGTCATTTCAAAACGTT 60.119 39.130 0.00 0.00 0.00 3.99
487 488 3.242712 GCACTGGTCATTTCAAAACGTTG 59.757 43.478 0.00 0.00 35.95 4.10
488 489 4.420168 CACTGGTCATTTCAAAACGTTGT 58.580 39.130 0.00 0.00 36.07 3.32
489 490 4.862018 CACTGGTCATTTCAAAACGTTGTT 59.138 37.500 0.00 0.00 36.07 2.83
490 491 5.347364 CACTGGTCATTTCAAAACGTTGTTT 59.653 36.000 0.00 0.00 36.07 2.83
491 492 6.528423 CACTGGTCATTTCAAAACGTTGTTTA 59.472 34.615 0.00 0.00 36.07 2.01
492 493 7.062371 CACTGGTCATTTCAAAACGTTGTTTAA 59.938 33.333 0.00 0.00 36.07 1.52
493 494 7.599245 ACTGGTCATTTCAAAACGTTGTTTAAA 59.401 29.630 0.00 0.00 36.07 1.52
494 495 8.306680 TGGTCATTTCAAAACGTTGTTTAAAA 57.693 26.923 0.00 0.00 36.07 1.52
495 496 8.770828 TGGTCATTTCAAAACGTTGTTTAAAAA 58.229 25.926 0.00 0.00 36.07 1.94
952 1127 1.689233 TCAGTCTCCCCAATCCCCG 60.689 63.158 0.00 0.00 0.00 5.73
976 1151 0.415429 TCCTCCAGCTCCTCTTCCTT 59.585 55.000 0.00 0.00 0.00 3.36
1198 1373 1.918800 CTTTCCAGTCCTCCCCCGT 60.919 63.158 0.00 0.00 0.00 5.28
1653 1830 0.257328 TGACCCTGTTCTTGTGGCAA 59.743 50.000 0.00 0.00 0.00 4.52
1677 1854 2.476619 CGTAGCAGAGTTGTGAGGTTTG 59.523 50.000 0.00 0.00 0.00 2.93
1698 1875 1.984026 GTTGGGCCTCAATGGGTGG 60.984 63.158 4.53 0.00 37.73 4.61
1706 1883 2.716217 CCTCAATGGGTGGAAAGAGAC 58.284 52.381 0.00 0.00 31.57 3.36
1722 1899 2.891580 AGAGACCAGACGTTTCAGCTAA 59.108 45.455 0.00 0.00 0.00 3.09
1739 1916 3.161866 GCTAATAGCAGCTACTCCCTCT 58.838 50.000 3.59 0.00 41.89 3.69
1745 1922 1.757405 GCAGCTACTCCCTCTGATCCT 60.757 57.143 0.00 0.00 0.00 3.24
1798 1975 8.500753 TCTCTACAAATTTGTACAAAGTGTGT 57.499 30.769 31.46 28.37 44.82 3.72
1800 1977 6.970043 TCTACAAATTTGTACAAAGTGTGTGC 59.030 34.615 31.46 0.00 41.89 4.57
1835 2012 3.972133 TCGGAGGGAGTACTTGATAACA 58.028 45.455 0.00 0.00 0.00 2.41
1837 2014 4.583489 TCGGAGGGAGTACTTGATAACATC 59.417 45.833 0.00 0.00 0.00 3.06
1886 2063 6.436738 TGGTGTGACTATTTGGTTAACCTA 57.563 37.500 24.78 15.42 36.82 3.08
1891 2068 8.448615 GTGTGACTATTTGGTTAACCTAATGTC 58.551 37.037 31.92 30.79 40.67 3.06
2015 2192 7.897864 ACTTTGTACATACTTGTTCTCTAGCT 58.102 34.615 0.00 0.00 37.28 3.32
2115 2293 3.953612 TGTTTTGCTCACTTGAGTGGAAT 59.046 39.130 10.97 0.00 45.65 3.01
2183 2361 6.605594 GTGTGGAGGTTTATATTCCATTGGAA 59.394 38.462 20.09 20.09 46.39 3.53
2184 2362 6.605594 TGTGGAGGTTTATATTCCATTGGAAC 59.394 38.462 20.21 7.30 45.07 3.62
2278 2456 6.208599 CACCTAAAAGGCCTCTTTGTTGAATA 59.791 38.462 5.23 0.00 41.92 1.75
2401 2579 4.428294 TTATTGCTTCCAGATCCCTGAG 57.572 45.455 0.00 0.00 43.02 3.35
2486 2664 0.322906 GTCCTTTCCCCCAGCTTCAG 60.323 60.000 0.00 0.00 0.00 3.02
2530 2708 5.362430 AGCCATTGAGTAAGTTTGTTTTCCA 59.638 36.000 0.00 0.00 0.00 3.53
2532 2710 6.705825 GCCATTGAGTAAGTTTGTTTTCCATT 59.294 34.615 0.00 0.00 0.00 3.16
2537 2715 9.796120 TTGAGTAAGTTTGTTTTCCATTTAGTG 57.204 29.630 0.00 0.00 0.00 2.74
2538 2716 7.918562 TGAGTAAGTTTGTTTTCCATTTAGTGC 59.081 33.333 0.00 0.00 0.00 4.40
2539 2717 8.007405 AGTAAGTTTGTTTTCCATTTAGTGCT 57.993 30.769 0.00 0.00 0.00 4.40
2540 2718 8.474831 AGTAAGTTTGTTTTCCATTTAGTGCTT 58.525 29.630 0.00 0.00 0.00 3.91
2541 2719 7.770801 AAGTTTGTTTTCCATTTAGTGCTTC 57.229 32.000 0.00 0.00 0.00 3.86
2542 2720 6.872920 AGTTTGTTTTCCATTTAGTGCTTCA 58.127 32.000 0.00 0.00 0.00 3.02
2543 2721 6.756542 AGTTTGTTTTCCATTTAGTGCTTCAC 59.243 34.615 0.00 0.00 34.10 3.18
3099 3279 7.282585 AGATTATTGGCAGCATTAGTTCTGTA 58.717 34.615 0.00 0.00 33.09 2.74
3162 3343 3.138884 AGTGTGTTGGTGATATGTGCA 57.861 42.857 0.00 0.00 0.00 4.57
3240 3421 4.310769 AGCGGCATAAGATCATTAGTCAC 58.689 43.478 1.45 0.00 0.00 3.67
3457 3639 9.499479 AATTGCTGTTTACTATATCAGGAGATG 57.501 33.333 0.00 0.00 35.67 2.90
3525 3707 3.438434 GCAAAGGAGACACTTGATTCCTC 59.562 47.826 6.71 0.00 39.09 3.71
3718 3900 2.638480 TTCTGCAGGTAAGCTGTTGT 57.362 45.000 15.13 0.00 35.31 3.32
3890 4072 7.390823 TCTTTCATTTGTACTACCATACTGCA 58.609 34.615 0.00 0.00 0.00 4.41
4000 4266 7.010552 CGATACCAATCTGTTCCTCACTTAAAG 59.989 40.741 0.00 0.00 0.00 1.85
4001 4267 4.762251 ACCAATCTGTTCCTCACTTAAAGC 59.238 41.667 0.00 0.00 0.00 3.51
4359 4626 1.676678 GGGCTCATCTAGACGTGGCA 61.677 60.000 14.97 0.00 31.76 4.92
4373 4640 0.674895 GTGGCAGGCTAAGTGACAGG 60.675 60.000 0.00 0.00 32.01 4.00
4405 4672 6.839134 ACAAAAGGTAACAATTTTCTCCCTCT 59.161 34.615 0.00 0.00 41.41 3.69
4423 4690 1.757118 TCTCTTCCCTATGGTTGCTCG 59.243 52.381 0.00 0.00 0.00 5.03
4529 4796 2.688446 GGAAGCAGCAAAACCTATACCC 59.312 50.000 0.00 0.00 0.00 3.69
4533 4800 2.743838 GCAGCAAAACCTATACCCGCTA 60.744 50.000 0.00 0.00 0.00 4.26
4919 5186 5.824624 AGACTACATCATTGGCATTTACCAG 59.175 40.000 0.00 0.00 41.82 4.00
5329 5596 2.875094 AAGCTTCAGAGTTGCCATCT 57.125 45.000 0.00 0.00 0.00 2.90
5531 5800 6.894339 TCAAAGGTACCTGAAAATTTCTCC 57.106 37.500 17.14 2.75 0.00 3.71
5532 5801 5.773176 TCAAAGGTACCTGAAAATTTCTCCC 59.227 40.000 17.14 0.54 0.00 4.30
5533 5802 5.333566 AAGGTACCTGAAAATTTCTCCCA 57.666 39.130 17.14 0.00 0.00 4.37
5534 5803 5.333566 AGGTACCTGAAAATTTCTCCCAA 57.666 39.130 15.42 0.00 0.00 4.12
5535 5804 5.077564 AGGTACCTGAAAATTTCTCCCAAC 58.922 41.667 15.42 0.00 0.00 3.77
5537 5806 6.045106 AGGTACCTGAAAATTTCTCCCAACTA 59.955 38.462 15.42 0.00 0.00 2.24
5538 5807 6.150641 GGTACCTGAAAATTTCTCCCAACTAC 59.849 42.308 4.06 0.00 0.00 2.73
5548 5871 4.115398 TCTCCCAACTACCTATCCTAGC 57.885 50.000 0.00 0.00 0.00 3.42
5577 5900 7.713734 ATTCATTGCCCCATTATCTATCTTG 57.286 36.000 0.00 0.00 0.00 3.02
5584 5907 3.916349 CCCATTATCTATCTTGGGGTGGA 59.084 47.826 0.00 0.00 44.29 4.02
5587 5910 2.897823 ATCTATCTTGGGGTGGAGGT 57.102 50.000 0.00 0.00 0.00 3.85
5588 5911 1.879575 TCTATCTTGGGGTGGAGGTG 58.120 55.000 0.00 0.00 0.00 4.00
5589 5912 0.181350 CTATCTTGGGGTGGAGGTGC 59.819 60.000 0.00 0.00 0.00 5.01
5590 5913 0.548926 TATCTTGGGGTGGAGGTGCA 60.549 55.000 0.00 0.00 0.00 4.57
5591 5914 1.856539 ATCTTGGGGTGGAGGTGCAG 61.857 60.000 0.00 0.00 0.00 4.41
5636 5992 3.431725 GGCTAGCAACGGTGGTGC 61.432 66.667 16.93 16.13 36.66 5.01
5637 5993 3.788766 GCTAGCAACGGTGGTGCG 61.789 66.667 16.93 7.43 36.66 5.34
5648 6065 3.636231 TGGTGCGGGGAGGTTGAG 61.636 66.667 0.00 0.00 0.00 3.02
5651 6068 4.649705 TGCGGGGAGGTTGAGGGA 62.650 66.667 0.00 0.00 0.00 4.20
5771 6200 6.465607 GGAGGAAGAAGCATGGATCTATTCTT 60.466 42.308 3.70 3.70 41.58 2.52
5774 6203 5.643421 AGAAGCATGGATCTATTCTTGGT 57.357 39.130 8.60 0.00 0.00 3.67
5781 6210 3.053693 TGGATCTATTCTTGGTGGTTGGG 60.054 47.826 0.00 0.00 0.00 4.12
5793 6222 2.359900 GTGGTTGGGTGATGATCTGAC 58.640 52.381 0.00 0.00 0.00 3.51
5877 6307 3.127376 TGCAGTACGTATAAGCGTCAAGA 59.873 43.478 0.00 0.00 44.55 3.02
5888 6318 0.318784 GCGTCAAGACTCGGTTCAGT 60.319 55.000 0.00 0.00 0.00 3.41
5889 6319 1.868519 GCGTCAAGACTCGGTTCAGTT 60.869 52.381 0.00 0.00 0.00 3.16
5890 6320 2.470821 CGTCAAGACTCGGTTCAGTTT 58.529 47.619 0.00 0.00 0.00 2.66
5891 6321 2.864343 CGTCAAGACTCGGTTCAGTTTT 59.136 45.455 0.00 0.00 0.00 2.43
5892 6322 3.060473 CGTCAAGACTCGGTTCAGTTTTC 60.060 47.826 0.00 0.00 0.00 2.29
5966 6397 1.416813 GCAGATCACGACTGAAGCGG 61.417 60.000 0.00 0.00 37.54 5.52
5971 6402 0.318699 TCACGACTGAAGCGGAGTTG 60.319 55.000 0.00 0.00 0.00 3.16
6016 6455 0.179111 TCGGCGATGATCAGTGAACC 60.179 55.000 4.99 0.00 0.00 3.62
6102 6547 4.657824 ACACGGCCGTTCGAGTGG 62.658 66.667 32.11 18.47 38.78 4.00
6212 6666 6.068461 ACTCTCATCTCCTCAACTGTACTA 57.932 41.667 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.257561 CAAGCGGTCGATCCTGCG 61.258 66.667 1.57 0.00 39.43 5.18
4 5 3.567797 GCAAGCGGTCGATCCTGC 61.568 66.667 0.00 0.00 36.51 4.85
5 6 1.091771 ATTGCAAGCGGTCGATCCTG 61.092 55.000 4.94 0.00 0.00 3.86
6 7 0.392998 AATTGCAAGCGGTCGATCCT 60.393 50.000 4.94 0.00 0.00 3.24
7 8 0.451783 AAATTGCAAGCGGTCGATCC 59.548 50.000 4.94 0.00 0.00 3.36
8 9 2.262572 AAAATTGCAAGCGGTCGATC 57.737 45.000 4.94 0.00 0.00 3.69
9 10 2.723124 AAAAATTGCAAGCGGTCGAT 57.277 40.000 4.94 0.00 0.00 3.59
29 30 8.238631 GCCACCGTTTGATTTAGTTTCTATTAA 58.761 33.333 0.00 0.00 0.00 1.40
30 31 7.390996 TGCCACCGTTTGATTTAGTTTCTATTA 59.609 33.333 0.00 0.00 0.00 0.98
31 32 6.207810 TGCCACCGTTTGATTTAGTTTCTATT 59.792 34.615 0.00 0.00 0.00 1.73
32 33 5.708230 TGCCACCGTTTGATTTAGTTTCTAT 59.292 36.000 0.00 0.00 0.00 1.98
33 34 5.064558 TGCCACCGTTTGATTTAGTTTCTA 58.935 37.500 0.00 0.00 0.00 2.10
34 35 3.886505 TGCCACCGTTTGATTTAGTTTCT 59.113 39.130 0.00 0.00 0.00 2.52
35 36 4.231718 TGCCACCGTTTGATTTAGTTTC 57.768 40.909 0.00 0.00 0.00 2.78
36 37 4.657436 TTGCCACCGTTTGATTTAGTTT 57.343 36.364 0.00 0.00 0.00 2.66
37 38 4.657436 TTTGCCACCGTTTGATTTAGTT 57.343 36.364 0.00 0.00 0.00 2.24
38 39 4.864704 ATTTGCCACCGTTTGATTTAGT 57.135 36.364 0.00 0.00 0.00 2.24
39 40 7.087639 TCTAAATTTGCCACCGTTTGATTTAG 58.912 34.615 0.00 0.00 37.13 1.85
40 41 6.982852 TCTAAATTTGCCACCGTTTGATTTA 58.017 32.000 0.00 0.00 0.00 1.40
41 42 5.848406 TCTAAATTTGCCACCGTTTGATTT 58.152 33.333 0.00 0.00 0.00 2.17
42 43 5.461032 TCTAAATTTGCCACCGTTTGATT 57.539 34.783 0.00 0.00 0.00 2.57
43 44 5.659440 ATCTAAATTTGCCACCGTTTGAT 57.341 34.783 0.00 0.00 0.00 2.57
44 45 6.431543 TCTTATCTAAATTTGCCACCGTTTGA 59.568 34.615 0.00 0.00 0.00 2.69
45 46 6.526674 GTCTTATCTAAATTTGCCACCGTTTG 59.473 38.462 0.00 0.00 0.00 2.93
46 47 6.349860 GGTCTTATCTAAATTTGCCACCGTTT 60.350 38.462 0.00 0.00 0.00 3.60
47 48 5.124936 GGTCTTATCTAAATTTGCCACCGTT 59.875 40.000 0.00 0.00 0.00 4.44
48 49 4.638865 GGTCTTATCTAAATTTGCCACCGT 59.361 41.667 0.00 0.00 0.00 4.83
49 50 4.638421 TGGTCTTATCTAAATTTGCCACCG 59.362 41.667 0.00 0.00 0.00 4.94
50 51 5.652452 AGTGGTCTTATCTAAATTTGCCACC 59.348 40.000 0.00 0.00 43.28 4.61
51 52 6.759497 AGTGGTCTTATCTAAATTTGCCAC 57.241 37.500 0.00 0.00 42.78 5.01
52 53 7.093945 GGAAAGTGGTCTTATCTAAATTTGCCA 60.094 37.037 0.00 0.00 33.09 4.92
53 54 7.258441 GGAAAGTGGTCTTATCTAAATTTGCC 58.742 38.462 0.00 0.00 33.09 4.52
54 55 6.967199 CGGAAAGTGGTCTTATCTAAATTTGC 59.033 38.462 0.00 0.00 33.09 3.68
55 56 8.040716 ACGGAAAGTGGTCTTATCTAAATTTG 57.959 34.615 0.00 0.00 33.09 2.32
56 57 9.901172 ATACGGAAAGTGGTCTTATCTAAATTT 57.099 29.630 0.00 0.00 33.09 1.82
62 63 9.901172 ATTTTTATACGGAAAGTGGTCTTATCT 57.099 29.630 0.00 0.00 33.09 1.98
94 95 9.844790 TGTTTGTAAGCATCTTCTAAATTCATG 57.155 29.630 0.00 0.00 0.00 3.07
237 238 6.104146 ACACTTGTAAACCACCTTGTTTTT 57.896 33.333 0.00 0.00 39.15 1.94
238 239 5.731957 ACACTTGTAAACCACCTTGTTTT 57.268 34.783 0.00 0.00 39.15 2.43
239 240 5.731957 AACACTTGTAAACCACCTTGTTT 57.268 34.783 0.00 0.00 41.18 2.83
240 241 5.731957 AAACACTTGTAAACCACCTTGTT 57.268 34.783 0.00 0.00 0.00 2.83
241 242 5.336929 GGAAAACACTTGTAAACCACCTTGT 60.337 40.000 0.00 0.00 0.00 3.16
242 243 5.105513 AGGAAAACACTTGTAAACCACCTTG 60.106 40.000 0.00 0.00 0.00 3.61
243 244 5.020795 AGGAAAACACTTGTAAACCACCTT 58.979 37.500 0.00 0.00 0.00 3.50
244 245 4.606210 AGGAAAACACTTGTAAACCACCT 58.394 39.130 0.00 0.00 0.00 4.00
245 246 4.994907 AGGAAAACACTTGTAAACCACC 57.005 40.909 0.00 0.00 0.00 4.61
253 254 9.403583 TCTTGTCTTTTATAGGAAAACACTTGT 57.596 29.630 0.00 0.00 0.00 3.16
262 263 9.793259 ACTTGTGATTCTTGTCTTTTATAGGAA 57.207 29.630 0.00 0.00 0.00 3.36
306 307 9.502091 AGAGCTACTAATTACATGTTTTTCACA 57.498 29.630 2.30 0.00 40.71 3.58
307 308 9.974750 GAGAGCTACTAATTACATGTTTTTCAC 57.025 33.333 2.30 0.00 0.00 3.18
308 309 9.944376 AGAGAGCTACTAATTACATGTTTTTCA 57.056 29.630 2.30 0.00 0.00 2.69
311 312 9.810545 GAGAGAGAGCTACTAATTACATGTTTT 57.189 33.333 2.30 0.97 0.00 2.43
312 313 9.196139 AGAGAGAGAGCTACTAATTACATGTTT 57.804 33.333 2.30 0.00 0.00 2.83
313 314 8.760980 AGAGAGAGAGCTACTAATTACATGTT 57.239 34.615 2.30 0.00 0.00 2.71
314 315 8.760980 AAGAGAGAGAGCTACTAATTACATGT 57.239 34.615 2.69 2.69 0.00 3.21
315 316 9.677567 GAAAGAGAGAGAGCTACTAATTACATG 57.322 37.037 0.00 0.00 0.00 3.21
316 317 9.640952 AGAAAGAGAGAGAGCTACTAATTACAT 57.359 33.333 0.00 0.00 0.00 2.29
317 318 8.898761 CAGAAAGAGAGAGAGCTACTAATTACA 58.101 37.037 0.00 0.00 0.00 2.41
318 319 8.349983 CCAGAAAGAGAGAGAGCTACTAATTAC 58.650 40.741 0.00 0.00 0.00 1.89
319 320 8.056400 ACCAGAAAGAGAGAGAGCTACTAATTA 58.944 37.037 0.00 0.00 0.00 1.40
320 321 6.895204 ACCAGAAAGAGAGAGAGCTACTAATT 59.105 38.462 0.00 0.00 0.00 1.40
321 322 6.431722 ACCAGAAAGAGAGAGAGCTACTAAT 58.568 40.000 0.00 0.00 0.00 1.73
322 323 5.822204 ACCAGAAAGAGAGAGAGCTACTAA 58.178 41.667 0.00 0.00 0.00 2.24
323 324 5.444744 ACCAGAAAGAGAGAGAGCTACTA 57.555 43.478 0.00 0.00 0.00 1.82
324 325 4.316025 ACCAGAAAGAGAGAGAGCTACT 57.684 45.455 0.00 0.00 0.00 2.57
325 326 5.650703 AGTAACCAGAAAGAGAGAGAGCTAC 59.349 44.000 0.00 0.00 0.00 3.58
326 327 5.650266 CAGTAACCAGAAAGAGAGAGAGCTA 59.350 44.000 0.00 0.00 0.00 3.32
327 328 4.462483 CAGTAACCAGAAAGAGAGAGAGCT 59.538 45.833 0.00 0.00 0.00 4.09
328 329 4.219725 ACAGTAACCAGAAAGAGAGAGAGC 59.780 45.833 0.00 0.00 0.00 4.09
329 330 5.105917 GGACAGTAACCAGAAAGAGAGAGAG 60.106 48.000 0.00 0.00 0.00 3.20
330 331 4.767928 GGACAGTAACCAGAAAGAGAGAGA 59.232 45.833 0.00 0.00 0.00 3.10
331 332 4.524714 TGGACAGTAACCAGAAAGAGAGAG 59.475 45.833 0.00 0.00 33.22 3.20
332 333 4.480115 TGGACAGTAACCAGAAAGAGAGA 58.520 43.478 0.00 0.00 33.22 3.10
333 334 4.873746 TGGACAGTAACCAGAAAGAGAG 57.126 45.455 0.00 0.00 33.22 3.20
334 335 5.623956 TTTGGACAGTAACCAGAAAGAGA 57.376 39.130 0.00 0.00 38.70 3.10
335 336 7.979444 TTATTTGGACAGTAACCAGAAAGAG 57.021 36.000 0.00 0.00 38.70 2.85
336 337 8.934023 ATTTATTTGGACAGTAACCAGAAAGA 57.066 30.769 0.00 0.00 38.70 2.52
346 347 9.400638 CGCTTGTTTTTATTTATTTGGACAGTA 57.599 29.630 0.00 0.00 0.00 2.74
347 348 8.138712 TCGCTTGTTTTTATTTATTTGGACAGT 58.861 29.630 0.00 0.00 0.00 3.55
348 349 8.514136 TCGCTTGTTTTTATTTATTTGGACAG 57.486 30.769 0.00 0.00 0.00 3.51
349 350 8.873215 TTCGCTTGTTTTTATTTATTTGGACA 57.127 26.923 0.00 0.00 0.00 4.02
358 359 9.946165 GGCTATAGTATTCGCTTGTTTTTATTT 57.054 29.630 0.84 0.00 0.00 1.40
359 360 8.565416 GGGCTATAGTATTCGCTTGTTTTTATT 58.435 33.333 0.84 0.00 0.00 1.40
360 361 7.717875 TGGGCTATAGTATTCGCTTGTTTTTAT 59.282 33.333 0.84 0.00 0.00 1.40
361 362 7.049133 TGGGCTATAGTATTCGCTTGTTTTTA 58.951 34.615 0.84 0.00 0.00 1.52
362 363 5.883673 TGGGCTATAGTATTCGCTTGTTTTT 59.116 36.000 0.84 0.00 0.00 1.94
363 364 5.433526 TGGGCTATAGTATTCGCTTGTTTT 58.566 37.500 0.84 0.00 0.00 2.43
364 365 5.031066 TGGGCTATAGTATTCGCTTGTTT 57.969 39.130 0.84 0.00 0.00 2.83
365 366 4.682778 TGGGCTATAGTATTCGCTTGTT 57.317 40.909 0.84 0.00 0.00 2.83
366 367 4.141801 TGTTGGGCTATAGTATTCGCTTGT 60.142 41.667 0.84 0.00 0.00 3.16
367 368 4.377021 TGTTGGGCTATAGTATTCGCTTG 58.623 43.478 0.84 0.00 0.00 4.01
368 369 4.344102 TCTGTTGGGCTATAGTATTCGCTT 59.656 41.667 0.84 0.00 0.00 4.68
369 370 3.895656 TCTGTTGGGCTATAGTATTCGCT 59.104 43.478 0.84 0.00 0.00 4.93
370 371 4.022242 TCTCTGTTGGGCTATAGTATTCGC 60.022 45.833 0.84 0.00 0.00 4.70
371 372 5.009710 TGTCTCTGTTGGGCTATAGTATTCG 59.990 44.000 0.84 0.00 0.00 3.34
372 373 6.265649 TCTGTCTCTGTTGGGCTATAGTATTC 59.734 42.308 0.84 0.00 0.00 1.75
373 374 6.136857 TCTGTCTCTGTTGGGCTATAGTATT 58.863 40.000 0.84 0.00 0.00 1.89
374 375 5.706447 TCTGTCTCTGTTGGGCTATAGTAT 58.294 41.667 0.84 0.00 0.00 2.12
375 376 5.125367 TCTGTCTCTGTTGGGCTATAGTA 57.875 43.478 0.84 0.00 0.00 1.82
376 377 3.982516 TCTGTCTCTGTTGGGCTATAGT 58.017 45.455 0.84 0.00 0.00 2.12
377 378 5.344743 TTTCTGTCTCTGTTGGGCTATAG 57.655 43.478 0.00 0.00 0.00 1.31
378 379 5.755409 TTTTCTGTCTCTGTTGGGCTATA 57.245 39.130 0.00 0.00 0.00 1.31
379 380 4.640771 TTTTCTGTCTCTGTTGGGCTAT 57.359 40.909 0.00 0.00 0.00 2.97
380 381 4.134563 GTTTTTCTGTCTCTGTTGGGCTA 58.865 43.478 0.00 0.00 0.00 3.93
381 382 2.952310 GTTTTTCTGTCTCTGTTGGGCT 59.048 45.455 0.00 0.00 0.00 5.19
382 383 2.687935 TGTTTTTCTGTCTCTGTTGGGC 59.312 45.455 0.00 0.00 0.00 5.36
383 384 3.066760 GGTGTTTTTCTGTCTCTGTTGGG 59.933 47.826 0.00 0.00 0.00 4.12
384 385 3.694072 TGGTGTTTTTCTGTCTCTGTTGG 59.306 43.478 0.00 0.00 0.00 3.77
385 386 4.396166 ACTGGTGTTTTTCTGTCTCTGTTG 59.604 41.667 0.00 0.00 0.00 3.33
386 387 4.589908 ACTGGTGTTTTTCTGTCTCTGTT 58.410 39.130 0.00 0.00 0.00 3.16
387 388 4.222124 ACTGGTGTTTTTCTGTCTCTGT 57.778 40.909 0.00 0.00 0.00 3.41
388 389 6.677781 TTTACTGGTGTTTTTCTGTCTCTG 57.322 37.500 0.00 0.00 0.00 3.35
389 390 7.696992 TTTTTACTGGTGTTTTTCTGTCTCT 57.303 32.000 0.00 0.00 0.00 3.10
412 413 7.125053 TGTTTTTAGGGTCTCATGTTCCTTTTT 59.875 33.333 0.00 0.00 0.00 1.94
413 414 6.609616 TGTTTTTAGGGTCTCATGTTCCTTTT 59.390 34.615 0.00 0.00 0.00 2.27
414 415 6.133356 TGTTTTTAGGGTCTCATGTTCCTTT 58.867 36.000 0.00 0.00 0.00 3.11
415 416 5.701224 TGTTTTTAGGGTCTCATGTTCCTT 58.299 37.500 0.00 0.00 0.00 3.36
416 417 5.319043 TGTTTTTAGGGTCTCATGTTCCT 57.681 39.130 0.00 0.00 0.00 3.36
417 418 5.768164 TCTTGTTTTTAGGGTCTCATGTTCC 59.232 40.000 0.00 0.00 0.00 3.62
418 419 6.568653 GCTCTTGTTTTTAGGGTCTCATGTTC 60.569 42.308 0.00 0.00 0.00 3.18
419 420 5.241728 GCTCTTGTTTTTAGGGTCTCATGTT 59.758 40.000 0.00 0.00 0.00 2.71
420 421 4.762251 GCTCTTGTTTTTAGGGTCTCATGT 59.238 41.667 0.00 0.00 0.00 3.21
421 422 4.761739 TGCTCTTGTTTTTAGGGTCTCATG 59.238 41.667 0.00 0.00 0.00 3.07
422 423 4.985538 TGCTCTTGTTTTTAGGGTCTCAT 58.014 39.130 0.00 0.00 0.00 2.90
423 424 4.389374 CTGCTCTTGTTTTTAGGGTCTCA 58.611 43.478 0.00 0.00 0.00 3.27
424 425 3.189495 GCTGCTCTTGTTTTTAGGGTCTC 59.811 47.826 0.00 0.00 0.00 3.36
425 426 3.149981 GCTGCTCTTGTTTTTAGGGTCT 58.850 45.455 0.00 0.00 0.00 3.85
426 427 2.229062 GGCTGCTCTTGTTTTTAGGGTC 59.771 50.000 0.00 0.00 0.00 4.46
427 428 2.239400 GGCTGCTCTTGTTTTTAGGGT 58.761 47.619 0.00 0.00 0.00 4.34
428 429 1.546029 GGGCTGCTCTTGTTTTTAGGG 59.454 52.381 0.00 0.00 0.00 3.53
429 430 2.238521 TGGGCTGCTCTTGTTTTTAGG 58.761 47.619 0.00 0.00 0.00 2.69
430 431 3.068024 TGTTGGGCTGCTCTTGTTTTTAG 59.932 43.478 0.00 0.00 0.00 1.85
431 432 3.027412 TGTTGGGCTGCTCTTGTTTTTA 58.973 40.909 0.00 0.00 0.00 1.52
432 433 1.830477 TGTTGGGCTGCTCTTGTTTTT 59.170 42.857 0.00 0.00 0.00 1.94
433 434 1.484038 TGTTGGGCTGCTCTTGTTTT 58.516 45.000 0.00 0.00 0.00 2.43
434 435 1.136891 GTTGTTGGGCTGCTCTTGTTT 59.863 47.619 0.00 0.00 0.00 2.83
435 436 0.746659 GTTGTTGGGCTGCTCTTGTT 59.253 50.000 0.00 0.00 0.00 2.83
436 437 0.106519 AGTTGTTGGGCTGCTCTTGT 60.107 50.000 0.00 0.00 0.00 3.16
437 438 0.595095 GAGTTGTTGGGCTGCTCTTG 59.405 55.000 0.00 0.00 0.00 3.02
438 439 0.886490 CGAGTTGTTGGGCTGCTCTT 60.886 55.000 0.00 0.00 0.00 2.85
439 440 1.302033 CGAGTTGTTGGGCTGCTCT 60.302 57.895 0.00 0.00 0.00 4.09
440 441 2.328099 CCGAGTTGTTGGGCTGCTC 61.328 63.158 0.00 0.00 0.00 4.26
441 442 2.281761 CCGAGTTGTTGGGCTGCT 60.282 61.111 0.00 0.00 0.00 4.24
442 443 2.594592 ACCGAGTTGTTGGGCTGC 60.595 61.111 0.00 0.00 0.00 5.25
443 444 1.071471 AGACCGAGTTGTTGGGCTG 59.929 57.895 0.00 0.00 45.36 4.85
444 445 3.563512 AGACCGAGTTGTTGGGCT 58.436 55.556 0.00 0.00 41.60 5.19
445 446 1.966451 CCAGACCGAGTTGTTGGGC 60.966 63.158 0.00 0.00 34.87 5.36
446 447 0.884704 CACCAGACCGAGTTGTTGGG 60.885 60.000 0.00 0.00 33.20 4.12
447 448 1.507141 GCACCAGACCGAGTTGTTGG 61.507 60.000 0.00 0.00 35.07 3.77
448 449 0.813610 TGCACCAGACCGAGTTGTTG 60.814 55.000 0.00 0.00 0.00 3.33
449 450 0.814010 GTGCACCAGACCGAGTTGTT 60.814 55.000 5.22 0.00 0.00 2.83
450 451 1.227556 GTGCACCAGACCGAGTTGT 60.228 57.895 5.22 0.00 0.00 3.32
451 452 1.069765 AGTGCACCAGACCGAGTTG 59.930 57.895 14.63 0.00 0.00 3.16
452 453 1.069765 CAGTGCACCAGACCGAGTT 59.930 57.895 14.63 0.00 0.00 3.01
453 454 2.737180 CAGTGCACCAGACCGAGT 59.263 61.111 14.63 0.00 0.00 4.18
454 455 2.047844 CCAGTGCACCAGACCGAG 60.048 66.667 14.63 0.00 0.00 4.63
455 456 2.842462 ACCAGTGCACCAGACCGA 60.842 61.111 14.63 0.00 0.00 4.69
456 457 2.357517 GACCAGTGCACCAGACCG 60.358 66.667 14.63 0.00 0.00 4.79
457 458 0.250901 AATGACCAGTGCACCAGACC 60.251 55.000 14.63 0.00 0.00 3.85
458 459 1.537202 GAAATGACCAGTGCACCAGAC 59.463 52.381 14.63 6.23 0.00 3.51
459 460 1.142667 TGAAATGACCAGTGCACCAGA 59.857 47.619 14.63 0.00 0.00 3.86
460 461 1.608055 TGAAATGACCAGTGCACCAG 58.392 50.000 14.63 7.78 0.00 4.00
461 462 2.064434 TTGAAATGACCAGTGCACCA 57.936 45.000 14.63 4.38 0.00 4.17
462 463 3.123050 GTTTTGAAATGACCAGTGCACC 58.877 45.455 14.63 0.00 0.00 5.01
463 464 2.788786 CGTTTTGAAATGACCAGTGCAC 59.211 45.455 9.40 9.40 0.00 4.57
464 465 2.425312 ACGTTTTGAAATGACCAGTGCA 59.575 40.909 2.88 0.00 0.00 4.57
465 466 3.078594 ACGTTTTGAAATGACCAGTGC 57.921 42.857 2.88 0.00 0.00 4.40
466 467 4.420168 ACAACGTTTTGAAATGACCAGTG 58.580 39.130 0.00 0.00 36.48 3.66
467 468 4.712122 ACAACGTTTTGAAATGACCAGT 57.288 36.364 0.00 0.00 36.48 4.00
468 469 7.513190 TTAAACAACGTTTTGAAATGACCAG 57.487 32.000 0.00 0.00 36.48 4.00
469 470 7.884816 TTTAAACAACGTTTTGAAATGACCA 57.115 28.000 0.00 0.00 36.48 4.02
850 854 4.152402 CGGAATTGCTATTTCCCATCTACG 59.848 45.833 0.00 0.00 39.63 3.51
952 1127 0.260523 AGAGGAGCTGGAGGAGGTAC 59.739 60.000 0.00 0.00 32.49 3.34
976 1151 1.683441 GGAAAGGGGGAAGAAGCGA 59.317 57.895 0.00 0.00 0.00 4.93
1198 1373 3.606886 GGAACGAGCAGAAGTGGAA 57.393 52.632 0.00 0.00 0.00 3.53
1653 1830 0.387367 CTCACAACTCTGCTACGCGT 60.387 55.000 19.17 19.17 0.00 6.01
1677 1854 1.380380 CCCATTGAGGCCCAACTCC 60.380 63.158 0.00 0.00 37.63 3.85
1698 1875 2.476997 GCTGAAACGTCTGGTCTCTTTC 59.523 50.000 0.00 0.00 0.00 2.62
1706 1883 3.521560 TGCTATTAGCTGAAACGTCTGG 58.478 45.455 16.29 0.00 42.97 3.86
1722 1899 3.430453 GATCAGAGGGAGTAGCTGCTAT 58.570 50.000 13.20 2.11 0.00 2.97
1739 1916 6.112734 AGTGTGCGTCAATTAATAAGGATCA 58.887 36.000 0.00 0.00 0.00 2.92
1798 1975 4.567537 CCCTCCGATCCATATTAATTGGCA 60.568 45.833 10.23 0.00 34.06 4.92
1800 1977 5.045578 ACTCCCTCCGATCCATATTAATTGG 60.046 44.000 0.00 1.98 35.45 3.16
1835 2012 5.597182 AGCATTCACAAAGCCTCAATATGAT 59.403 36.000 0.00 0.00 0.00 2.45
1837 2014 5.258456 AGCATTCACAAAGCCTCAATATG 57.742 39.130 0.00 0.00 0.00 1.78
1904 2081 8.531146 ACTTCAAAAGAAAAGGATCACAAGAAA 58.469 29.630 0.00 0.00 0.00 2.52
1990 2167 7.897864 AGCTAGAGAACAAGTATGTACAAAGT 58.102 34.615 0.00 0.00 39.40 2.66
2048 2225 3.769369 ATGCATGGCAGGAGCTCGG 62.769 63.158 7.83 3.46 43.65 4.63
2183 2361 1.445871 GCCCACGTTCTTTATTCCGT 58.554 50.000 0.00 0.00 0.00 4.69
2184 2362 0.372334 CGCCCACGTTCTTTATTCCG 59.628 55.000 0.00 0.00 33.53 4.30
2401 2579 0.105039 CGTCTGCTGAGGGGATTACC 59.895 60.000 5.47 0.00 39.11 2.85
2486 2664 5.154222 GGCTGCAATCAACTGTTTAACTAC 58.846 41.667 0.50 0.00 0.00 2.73
2668 2848 6.390721 TCCATCTCTAGAGAACACGAAAAAG 58.609 40.000 25.77 6.13 41.36 2.27
2836 3016 6.485313 ACGAGTACATCAAGGATTTTGTTTCA 59.515 34.615 0.00 0.00 0.00 2.69
3162 3343 2.493278 GCAGCATGTCCAAACAATAGGT 59.507 45.455 0.00 0.00 39.30 3.08
3240 3421 7.710475 ACCAAATTCCTTTTGTGTGAAATGTAG 59.290 33.333 0.00 0.00 42.68 2.74
3457 3639 5.495502 GCAATGCAGCAATTTATAACTTGC 58.504 37.500 25.16 25.16 46.32 4.01
3525 3707 8.612619 AGTTATCAATACATTCCTGTTTTAGCG 58.387 33.333 0.00 0.00 36.79 4.26
3771 3953 6.402550 GCCTTCCTGAACATATATATTGTGCG 60.403 42.308 0.00 0.00 0.00 5.34
3890 4072 4.460382 CCTCAGATTTAACTTGTGGCATGT 59.540 41.667 0.00 0.00 0.00 3.21
3984 4250 2.143122 TGCGCTTTAAGTGAGGAACAG 58.857 47.619 9.73 0.00 0.00 3.16
4022 4289 9.695155 ACCTTAGCAACATAAATGGTAACTATT 57.305 29.630 0.00 0.00 36.23 1.73
4359 4626 1.279496 TGCATCCTGTCACTTAGCCT 58.721 50.000 0.00 0.00 0.00 4.58
4373 4640 8.611757 AGAAAATTGTTACCTTTTGTTTGCATC 58.388 29.630 0.00 0.00 0.00 3.91
4405 4672 0.178068 GCGAGCAACCATAGGGAAGA 59.822 55.000 0.00 0.00 38.05 2.87
4423 4690 6.753107 TTAGGTTAGAGTTGGCAAATAAGC 57.247 37.500 0.00 11.20 0.00 3.09
4529 4796 1.732259 AGCGGAGTTTGTTCAATAGCG 59.268 47.619 0.00 0.00 0.00 4.26
4533 4800 6.992123 TCATCATATAGCGGAGTTTGTTCAAT 59.008 34.615 0.00 0.00 0.00 2.57
4672 4939 4.846779 TGCTGGTTCAATAACTTCCAAC 57.153 40.909 0.00 0.00 35.81 3.77
4919 5186 5.632347 CAGCTTTTCTTTTGACATGTCATCC 59.368 40.000 28.32 2.02 39.64 3.51
5275 5542 0.335019 AAAATAGGGCGGCCTTCCTT 59.665 50.000 37.40 22.97 34.75 3.36
5496 5765 5.856455 CAGGTACCTTTGAAATAGCAAAACG 59.144 40.000 13.15 0.00 37.32 3.60
5510 5779 5.711698 TGGGAGAAATTTTCAGGTACCTTT 58.288 37.500 13.15 2.25 0.00 3.11
5511 5780 5.333566 TGGGAGAAATTTTCAGGTACCTT 57.666 39.130 13.15 0.00 0.00 3.50
5531 5800 3.220110 TCACGCTAGGATAGGTAGTTGG 58.780 50.000 0.00 0.00 39.70 3.77
5532 5801 4.913335 TTCACGCTAGGATAGGTAGTTG 57.087 45.455 0.00 0.00 39.70 3.16
5533 5802 5.597182 TGAATTCACGCTAGGATAGGTAGTT 59.403 40.000 3.38 0.00 39.70 2.24
5534 5803 5.138276 TGAATTCACGCTAGGATAGGTAGT 58.862 41.667 3.38 0.00 39.70 2.73
5535 5804 5.707242 TGAATTCACGCTAGGATAGGTAG 57.293 43.478 3.38 0.00 39.70 3.18
5537 5806 5.300752 CAATGAATTCACGCTAGGATAGGT 58.699 41.667 11.07 0.00 39.70 3.08
5538 5807 4.153117 GCAATGAATTCACGCTAGGATAGG 59.847 45.833 19.57 0.00 39.70 2.57
5548 5871 2.965572 AATGGGGCAATGAATTCACG 57.034 45.000 11.07 6.31 0.00 4.35
5588 5911 1.849823 ATCCCTCTATGCCCCCTGC 60.850 63.158 0.00 0.00 41.77 4.85
5589 5912 1.495579 CCATCCCTCTATGCCCCCTG 61.496 65.000 0.00 0.00 0.00 4.45
5590 5913 1.151721 CCATCCCTCTATGCCCCCT 60.152 63.158 0.00 0.00 0.00 4.79
5591 5914 1.464198 ACCATCCCTCTATGCCCCC 60.464 63.158 0.00 0.00 0.00 5.40
5619 5975 3.431725 GCACCACCGTTGCTAGCC 61.432 66.667 13.29 0.00 0.00 3.93
5622 5978 4.690719 CCCGCACCACCGTTGCTA 62.691 66.667 0.00 0.00 0.00 3.49
5630 5986 3.901797 CTCAACCTCCCCGCACCAC 62.902 68.421 0.00 0.00 0.00 4.16
5631 5987 3.636231 CTCAACCTCCCCGCACCA 61.636 66.667 0.00 0.00 0.00 4.17
5632 5988 4.410400 CCTCAACCTCCCCGCACC 62.410 72.222 0.00 0.00 0.00 5.01
5636 5992 2.670148 CCTTCCCTCAACCTCCCCG 61.670 68.421 0.00 0.00 0.00 5.73
5637 5993 2.309504 CCCTTCCCTCAACCTCCCC 61.310 68.421 0.00 0.00 0.00 4.81
5642 6059 4.426313 CCCGCCCTTCCCTCAACC 62.426 72.222 0.00 0.00 0.00 3.77
5722 6139 4.855230 TGCCCCCATCCTACCCCC 62.855 72.222 0.00 0.00 0.00 5.40
5771 6200 1.004628 CAGATCATCACCCAACCACCA 59.995 52.381 0.00 0.00 0.00 4.17
5774 6203 1.281867 GGTCAGATCATCACCCAACCA 59.718 52.381 0.00 0.00 0.00 3.67
5781 6210 2.898729 ATGGACGGTCAGATCATCAC 57.101 50.000 10.76 0.00 0.00 3.06
5793 6222 6.205464 AGTGCATCAATTTCTAATATGGACGG 59.795 38.462 0.00 0.00 41.87 4.79
5837 6267 1.339291 GCAATGGGAGCCTCTATTTGC 59.661 52.381 9.19 9.19 0.00 3.68
5877 6307 4.575236 GGAGAAAAGAAAACTGAACCGAGT 59.425 41.667 0.00 0.00 0.00 4.18
5966 6397 3.553511 CGGCACTGTATCTCAATCAACTC 59.446 47.826 0.00 0.00 0.00 3.01
5971 6402 2.120232 CGACGGCACTGTATCTCAATC 58.880 52.381 0.00 0.00 0.00 2.67
6003 6442 0.179100 CCTCGCGGTTCACTGATCAT 60.179 55.000 6.13 0.00 0.00 2.45
6016 6455 0.456221 AGATACTGTTCACCCTCGCG 59.544 55.000 0.00 0.00 0.00 5.87
6127 6572 4.811969 AGATTGAAAAGCCATTGCATGA 57.188 36.364 0.00 0.00 41.13 3.07
6225 6679 1.687123 ACGGTGCACTAACTGAAGAGT 59.313 47.619 17.98 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.