Multiple sequence alignment - TraesCS2D01G228200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G228200 chr2D 100.000 6127 0 0 1 6127 196861475 196855349 0.000000e+00 11315
1 TraesCS2D01G228200 chr2D 97.380 1412 36 1 3426 4836 43809646 43811057 0.000000e+00 2401
2 TraesCS2D01G228200 chr2D 91.667 84 5 2 597 679 196860744 196860662 1.400000e-21 115
3 TraesCS2D01G228200 chr2D 91.667 84 5 2 732 814 196860879 196860797 1.400000e-21 115
4 TraesCS2D01G228200 chr1D 97.234 1446 39 1 3426 4870 490442945 490441500 0.000000e+00 2447
5 TraesCS2D01G228200 chr1D 90.050 603 54 6 1 599 415429269 415428669 0.000000e+00 776
6 TraesCS2D01G228200 chr4D 95.264 1457 60 5 3417 4870 489335023 489333573 0.000000e+00 2300
7 TraesCS2D01G228200 chr1B 95.382 1451 57 7 3426 4870 45813259 45814705 0.000000e+00 2300
8 TraesCS2D01G228200 chr5B 95.436 1446 57 5 3426 4865 441101186 441102628 0.000000e+00 2296
9 TraesCS2D01G228200 chr5B 91.860 86 7 0 2689 2774 659171567 659171482 3.000000e-23 121
10 TraesCS2D01G228200 chr6A 95.241 1450 63 3 3427 4870 109781477 109782926 0.000000e+00 2290
11 TraesCS2D01G228200 chr6A 93.023 86 4 2 2689 2773 17739974 17739890 2.320000e-24 124
12 TraesCS2D01G228200 chr7D 95.238 1449 62 4 3426 4870 226123940 226122495 0.000000e+00 2287
13 TraesCS2D01G228200 chr7D 91.946 596 44 4 1 592 136240456 136239861 0.000000e+00 832
14 TraesCS2D01G228200 chr7D 94.118 85 5 0 2689 2773 177118693 177118777 4.980000e-26 130
15 TraesCS2D01G228200 chr7D 91.011 89 8 0 2689 2777 375305459 375305371 3.000000e-23 121
16 TraesCS2D01G228200 chr2B 93.762 1539 42 14 701 2186 254289182 254287645 0.000000e+00 2261
17 TraesCS2D01G228200 chr2B 91.617 668 32 12 2779 3426 254287171 254286508 0.000000e+00 902
18 TraesCS2D01G228200 chr2B 87.970 665 33 19 5487 6127 254282883 254282242 0.000000e+00 741
19 TraesCS2D01G228200 chr2B 96.307 352 11 1 4875 5226 254286519 254286170 1.480000e-160 577
20 TraesCS2D01G228200 chr2B 94.444 270 15 0 2419 2688 254287512 254287243 3.420000e-112 416
21 TraesCS2D01G228200 chr2B 94.815 135 7 0 5227 5361 254286196 254286062 1.730000e-50 211
22 TraesCS2D01G228200 chr2B 94.048 84 4 1 597 679 254289151 254289068 6.450000e-25 126
23 TraesCS2D01G228200 chr4A 94.755 1449 72 3 3426 4870 708576914 708578362 0.000000e+00 2252
24 TraesCS2D01G228200 chr4A 91.860 86 7 0 2689 2774 73459893 73459808 3.000000e-23 121
25 TraesCS2D01G228200 chr3B 94.697 1452 67 6 3426 4870 529807249 529805801 0.000000e+00 2246
26 TraesCS2D01G228200 chr3B 82.201 309 53 2 1382 1689 731484977 731485284 1.310000e-66 265
27 TraesCS2D01G228200 chr3B 93.023 86 6 0 2689 2774 817027899 817027814 6.450000e-25 126
28 TraesCS2D01G228200 chr2A 95.414 1243 32 10 958 2186 213114267 213113036 0.000000e+00 1956
29 TraesCS2D01G228200 chr2A 91.667 732 27 16 5424 6127 213109908 213109183 0.000000e+00 983
30 TraesCS2D01G228200 chr2A 91.615 644 38 5 2796 3426 213111148 213110508 0.000000e+00 876
31 TraesCS2D01G228200 chr2A 91.000 600 49 5 1 596 746817387 746817985 0.000000e+00 804
32 TraesCS2D01G228200 chr2A 96.919 357 5 5 4872 5226 213110522 213110170 1.470000e-165 593
33 TraesCS2D01G228200 chr2A 97.059 272 8 0 2419 2690 213112946 213112675 5.600000e-125 459
34 TraesCS2D01G228200 chr2A 91.481 270 10 7 701 960 213114585 213114319 5.840000e-95 359
35 TraesCS2D01G228200 chr2A 94.512 164 9 0 5226 5389 213110197 213110034 2.830000e-63 254
36 TraesCS2D01G228200 chr2A 90.698 86 8 0 2689 2774 827027 827112 1.400000e-21 115
37 TraesCS2D01G228200 chr6D 90.818 599 49 6 1 596 43482563 43483158 0.000000e+00 797
38 TraesCS2D01G228200 chr3D 90.909 594 51 3 1 592 451599120 451598528 0.000000e+00 795
39 TraesCS2D01G228200 chr3D 90.500 600 51 6 1 596 598879151 598879748 0.000000e+00 787
40 TraesCS2D01G228200 chr3D 76.076 581 127 9 1381 1955 593216061 593216635 6.010000e-75 292
41 TraesCS2D01G228200 chr3D 95.588 68 3 0 2873 2940 152542541 152542608 6.490000e-20 110
42 TraesCS2D01G228200 chr5D 89.983 599 55 5 1 596 519334641 519335237 0.000000e+00 769
43 TraesCS2D01G228200 chr5D 89.718 603 56 6 1 599 449253633 449254233 0.000000e+00 765
44 TraesCS2D01G228200 chr3A 89.570 604 55 8 1 599 57366232 57366832 0.000000e+00 760
45 TraesCS2D01G228200 chr3A 75.514 486 115 4 1382 1865 724484269 724484752 1.030000e-57 235
46 TraesCS2D01G228200 chr4B 78.793 646 125 12 1382 2021 665855317 665855956 2.040000e-114 424
47 TraesCS2D01G228200 chrUn 78.173 646 129 12 1382 2021 108369416 108368777 9.570000e-108 401
48 TraesCS2D01G228200 chr5A 78.053 647 128 13 1382 2021 705822896 705823535 4.450000e-106 396
49 TraesCS2D01G228200 chr1A 84.839 310 43 4 1382 1689 13973238 13973545 5.960000e-80 309
50 TraesCS2D01G228200 chr6B 91.860 86 7 0 2689 2774 644377880 644377795 3.000000e-23 121
51 TraesCS2D01G228200 chr7B 90.000 90 9 0 2689 2778 539687363 539687274 3.880000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G228200 chr2D 196855349 196861475 6126 True 3848.333333 11315 94.444667 1 6127 3 chr2D.!!$R1 6126
1 TraesCS2D01G228200 chr2D 43809646 43811057 1411 False 2401.000000 2401 97.380000 3426 4836 1 chr2D.!!$F1 1410
2 TraesCS2D01G228200 chr1D 490441500 490442945 1445 True 2447.000000 2447 97.234000 3426 4870 1 chr1D.!!$R2 1444
3 TraesCS2D01G228200 chr1D 415428669 415429269 600 True 776.000000 776 90.050000 1 599 1 chr1D.!!$R1 598
4 TraesCS2D01G228200 chr4D 489333573 489335023 1450 True 2300.000000 2300 95.264000 3417 4870 1 chr4D.!!$R1 1453
5 TraesCS2D01G228200 chr1B 45813259 45814705 1446 False 2300.000000 2300 95.382000 3426 4870 1 chr1B.!!$F1 1444
6 TraesCS2D01G228200 chr5B 441101186 441102628 1442 False 2296.000000 2296 95.436000 3426 4865 1 chr5B.!!$F1 1439
7 TraesCS2D01G228200 chr6A 109781477 109782926 1449 False 2290.000000 2290 95.241000 3427 4870 1 chr6A.!!$F1 1443
8 TraesCS2D01G228200 chr7D 226122495 226123940 1445 True 2287.000000 2287 95.238000 3426 4870 1 chr7D.!!$R2 1444
9 TraesCS2D01G228200 chr7D 136239861 136240456 595 True 832.000000 832 91.946000 1 592 1 chr7D.!!$R1 591
10 TraesCS2D01G228200 chr2B 254282242 254289182 6940 True 747.714286 2261 93.280429 597 6127 7 chr2B.!!$R1 5530
11 TraesCS2D01G228200 chr4A 708576914 708578362 1448 False 2252.000000 2252 94.755000 3426 4870 1 chr4A.!!$F1 1444
12 TraesCS2D01G228200 chr3B 529805801 529807249 1448 True 2246.000000 2246 94.697000 3426 4870 1 chr3B.!!$R1 1444
13 TraesCS2D01G228200 chr2A 746817387 746817985 598 False 804.000000 804 91.000000 1 596 1 chr2A.!!$F2 595
14 TraesCS2D01G228200 chr2A 213109183 213114585 5402 True 782.857143 1956 94.095286 701 6127 7 chr2A.!!$R1 5426
15 TraesCS2D01G228200 chr6D 43482563 43483158 595 False 797.000000 797 90.818000 1 596 1 chr6D.!!$F1 595
16 TraesCS2D01G228200 chr3D 451598528 451599120 592 True 795.000000 795 90.909000 1 592 1 chr3D.!!$R1 591
17 TraesCS2D01G228200 chr3D 598879151 598879748 597 False 787.000000 787 90.500000 1 596 1 chr3D.!!$F3 595
18 TraesCS2D01G228200 chr3D 593216061 593216635 574 False 292.000000 292 76.076000 1381 1955 1 chr3D.!!$F2 574
19 TraesCS2D01G228200 chr5D 519334641 519335237 596 False 769.000000 769 89.983000 1 596 1 chr5D.!!$F2 595
20 TraesCS2D01G228200 chr5D 449253633 449254233 600 False 765.000000 765 89.718000 1 599 1 chr5D.!!$F1 598
21 TraesCS2D01G228200 chr3A 57366232 57366832 600 False 760.000000 760 89.570000 1 599 1 chr3A.!!$F1 598
22 TraesCS2D01G228200 chr4B 665855317 665855956 639 False 424.000000 424 78.793000 1382 2021 1 chr4B.!!$F1 639
23 TraesCS2D01G228200 chrUn 108368777 108369416 639 True 401.000000 401 78.173000 1382 2021 1 chrUn.!!$R1 639
24 TraesCS2D01G228200 chr5A 705822896 705823535 639 False 396.000000 396 78.053000 1382 2021 1 chr5A.!!$F1 639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
486 489 0.107848 CGATCACCGGGCCTAAAAGT 60.108 55.000 6.32 0.0 33.91 2.66 F
2207 2319 0.036388 AACTGTGGCGTAGGGACATG 60.036 55.000 0.00 0.0 34.91 3.21 F
2815 4447 0.108019 AAAGTCTTGACCGGTGTCCC 59.892 55.000 14.63 0.0 41.01 4.46 F
2828 4461 1.609841 GGTGTCCCTTTTACTGACCCG 60.610 57.143 0.00 0.0 0.00 5.28 F
3150 4806 1.648467 GAGGCACGCTCATCCAAACC 61.648 60.000 0.00 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2246 2358 0.035317 ATGCTGACAACGCTCAAGGA 59.965 50.000 0.00 0.00 0.00 3.36 R
3532 5190 0.037139 TGCTTAGACGGCGGCTTTAA 60.037 50.000 25.39 9.67 0.00 1.52 R
3736 5395 1.816835 AGCAAGGTTGATGCATCAGTG 59.183 47.619 27.25 22.62 46.22 3.66 R
3963 5622 2.430465 GTGGTGATGTCAAGTCATGCT 58.570 47.619 0.00 0.00 0.00 3.79 R
5218 6886 7.486407 AAAAACTGAGATAATGCCATTTCCT 57.514 32.000 0.00 0.00 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
228 230 2.966590 GCCGGAAAAATCGCCCAA 59.033 55.556 5.05 0.00 0.00 4.12
395 397 3.409026 AGACTTGACTTTTCGCCTGAT 57.591 42.857 0.00 0.00 0.00 2.90
423 425 1.880646 GCCAGACGTGCTTTTCCCTTA 60.881 52.381 0.00 0.00 0.00 2.69
485 488 1.436983 GCGATCACCGGGCCTAAAAG 61.437 60.000 6.32 0.00 39.04 2.27
486 489 0.107848 CGATCACCGGGCCTAAAAGT 60.108 55.000 6.32 0.00 33.91 2.66
516 519 0.179040 GGTGGTTTTCGGTGTCCTGA 60.179 55.000 0.00 0.00 0.00 3.86
521 524 2.224354 GGTTTTCGGTGTCCTGAAGGTA 60.224 50.000 0.00 0.00 36.34 3.08
522 525 3.558533 GGTTTTCGGTGTCCTGAAGGTAT 60.559 47.826 0.00 0.00 36.34 2.73
599 606 0.944788 GCGGCCGGAGATAGCTTAAC 60.945 60.000 29.38 0.17 0.00 2.01
600 607 0.674534 CGGCCGGAGATAGCTTAACT 59.325 55.000 20.10 0.00 0.00 2.24
601 608 1.336056 CGGCCGGAGATAGCTTAACTC 60.336 57.143 20.10 0.00 0.00 3.01
602 609 1.001068 GGCCGGAGATAGCTTAACTCC 59.999 57.143 5.05 17.78 44.50 3.85
603 610 1.964933 GCCGGAGATAGCTTAACTCCT 59.035 52.381 22.11 1.87 45.40 3.69
604 611 2.288518 GCCGGAGATAGCTTAACTCCTG 60.289 54.545 22.11 18.68 45.40 3.86
605 612 2.959707 CCGGAGATAGCTTAACTCCTGT 59.040 50.000 22.11 0.00 45.40 4.00
606 613 3.243569 CCGGAGATAGCTTAACTCCTGTG 60.244 52.174 22.11 12.37 45.40 3.66
607 614 3.381908 CGGAGATAGCTTAACTCCTGTGT 59.618 47.826 22.11 0.00 45.40 3.72
608 615 4.142138 CGGAGATAGCTTAACTCCTGTGTT 60.142 45.833 22.11 0.00 45.40 3.32
609 616 5.624738 CGGAGATAGCTTAACTCCTGTGTTT 60.625 44.000 22.11 0.00 45.40 2.83
610 617 6.174049 GGAGATAGCTTAACTCCTGTGTTTT 58.826 40.000 19.43 0.00 44.54 2.43
611 618 7.328737 GGAGATAGCTTAACTCCTGTGTTTTA 58.671 38.462 19.43 0.00 44.54 1.52
612 619 7.822822 GGAGATAGCTTAACTCCTGTGTTTTAA 59.177 37.037 19.43 0.00 44.54 1.52
613 620 8.549338 AGATAGCTTAACTCCTGTGTTTTAAC 57.451 34.615 0.00 0.00 0.00 2.01
614 621 5.668558 AGCTTAACTCCTGTGTTTTAACG 57.331 39.130 0.00 0.00 0.00 3.18
615 622 4.024302 AGCTTAACTCCTGTGTTTTAACGC 60.024 41.667 0.00 0.00 39.77 4.84
616 623 4.260866 GCTTAACTCCTGTGTTTTAACGCA 60.261 41.667 8.41 8.41 46.17 5.24
617 624 5.562113 GCTTAACTCCTGTGTTTTAACGCAT 60.562 40.000 9.08 0.00 46.97 4.73
618 625 3.896648 ACTCCTGTGTTTTAACGCATG 57.103 42.857 9.08 7.12 46.97 4.06
619 626 2.031157 ACTCCTGTGTTTTAACGCATGC 60.031 45.455 7.91 7.91 46.97 4.06
620 627 2.226330 TCCTGTGTTTTAACGCATGCT 58.774 42.857 17.13 0.00 46.97 3.79
621 628 2.621055 TCCTGTGTTTTAACGCATGCTT 59.379 40.909 17.13 11.44 46.97 3.91
622 629 2.979813 CCTGTGTTTTAACGCATGCTTC 59.020 45.455 17.13 0.00 46.97 3.86
623 630 3.304659 CCTGTGTTTTAACGCATGCTTCT 60.305 43.478 17.13 2.06 46.97 2.85
624 631 4.290155 CTGTGTTTTAACGCATGCTTCTT 58.710 39.130 17.13 6.74 46.97 2.52
625 632 4.677584 TGTGTTTTAACGCATGCTTCTTT 58.322 34.783 17.13 6.07 43.79 2.52
626 633 5.105752 TGTGTTTTAACGCATGCTTCTTTT 58.894 33.333 17.13 3.59 43.79 2.27
627 634 5.231147 TGTGTTTTAACGCATGCTTCTTTTC 59.769 36.000 17.13 2.45 43.79 2.29
628 635 5.458779 GTGTTTTAACGCATGCTTCTTTTCT 59.541 36.000 17.13 0.00 39.17 2.52
629 636 5.685511 TGTTTTAACGCATGCTTCTTTTCTC 59.314 36.000 17.13 0.00 0.00 2.87
630 637 2.997485 AACGCATGCTTCTTTTCTCC 57.003 45.000 17.13 0.00 0.00 3.71
631 638 1.168714 ACGCATGCTTCTTTTCTCCC 58.831 50.000 17.13 0.00 0.00 4.30
632 639 0.453390 CGCATGCTTCTTTTCTCCCC 59.547 55.000 17.13 0.00 0.00 4.81
633 640 0.820226 GCATGCTTCTTTTCTCCCCC 59.180 55.000 11.37 0.00 0.00 5.40
634 641 1.892329 GCATGCTTCTTTTCTCCCCCA 60.892 52.381 11.37 0.00 0.00 4.96
635 642 1.821136 CATGCTTCTTTTCTCCCCCAC 59.179 52.381 0.00 0.00 0.00 4.61
636 643 0.850100 TGCTTCTTTTCTCCCCCACA 59.150 50.000 0.00 0.00 0.00 4.17
637 644 1.216678 TGCTTCTTTTCTCCCCCACAA 59.783 47.619 0.00 0.00 0.00 3.33
638 645 1.889170 GCTTCTTTTCTCCCCCACAAG 59.111 52.381 0.00 0.00 0.00 3.16
639 646 1.889170 CTTCTTTTCTCCCCCACAAGC 59.111 52.381 0.00 0.00 0.00 4.01
640 647 1.149101 TCTTTTCTCCCCCACAAGCT 58.851 50.000 0.00 0.00 0.00 3.74
641 648 1.202927 TCTTTTCTCCCCCACAAGCTG 60.203 52.381 0.00 0.00 0.00 4.24
642 649 0.827507 TTTTCTCCCCCACAAGCTGC 60.828 55.000 0.00 0.00 0.00 5.25
643 650 3.551496 TTCTCCCCCACAAGCTGCG 62.551 63.158 0.00 0.00 0.00 5.18
646 653 4.659172 CCCCCACAAGCTGCGGAA 62.659 66.667 0.00 0.00 0.00 4.30
647 654 3.365265 CCCCACAAGCTGCGGAAC 61.365 66.667 0.00 0.00 0.00 3.62
660 667 3.668386 GGAACGCCAGGACAAAGG 58.332 61.111 0.00 0.00 0.00 3.11
661 668 1.072505 GGAACGCCAGGACAAAGGA 59.927 57.895 0.00 0.00 0.00 3.36
662 669 0.536460 GGAACGCCAGGACAAAGGAA 60.536 55.000 0.00 0.00 0.00 3.36
663 670 1.314730 GAACGCCAGGACAAAGGAAA 58.685 50.000 0.00 0.00 0.00 3.13
664 671 1.001706 GAACGCCAGGACAAAGGAAAC 60.002 52.381 0.00 0.00 0.00 2.78
665 672 1.164041 ACGCCAGGACAAAGGAAACG 61.164 55.000 0.00 0.00 0.00 3.60
666 673 0.882927 CGCCAGGACAAAGGAAACGA 60.883 55.000 0.00 0.00 0.00 3.85
667 674 0.591659 GCCAGGACAAAGGAAACGAC 59.408 55.000 0.00 0.00 0.00 4.34
668 675 1.961793 CCAGGACAAAGGAAACGACA 58.038 50.000 0.00 0.00 0.00 4.35
669 676 2.294074 CCAGGACAAAGGAAACGACAA 58.706 47.619 0.00 0.00 0.00 3.18
670 677 2.685897 CCAGGACAAAGGAAACGACAAA 59.314 45.455 0.00 0.00 0.00 2.83
671 678 3.129638 CCAGGACAAAGGAAACGACAAAA 59.870 43.478 0.00 0.00 0.00 2.44
672 679 4.102649 CAGGACAAAGGAAACGACAAAAC 58.897 43.478 0.00 0.00 0.00 2.43
673 680 3.103007 GGACAAAGGAAACGACAAAACG 58.897 45.455 0.00 0.00 39.31 3.60
674 681 3.181508 GGACAAAGGAAACGACAAAACGA 60.182 43.478 0.00 0.00 37.03 3.85
675 682 4.011058 ACAAAGGAAACGACAAAACGAG 57.989 40.909 0.00 0.00 37.03 4.18
676 683 3.437741 ACAAAGGAAACGACAAAACGAGT 59.562 39.130 0.00 0.00 37.03 4.18
677 684 3.938778 AAGGAAACGACAAAACGAGTC 57.061 42.857 0.00 0.00 37.03 3.36
678 685 2.896168 AGGAAACGACAAAACGAGTCA 58.104 42.857 0.00 0.00 35.77 3.41
679 686 2.864343 AGGAAACGACAAAACGAGTCAG 59.136 45.455 0.00 0.00 35.77 3.51
680 687 2.606272 GGAAACGACAAAACGAGTCAGT 59.394 45.455 0.00 0.00 35.77 3.41
681 688 3.543460 GGAAACGACAAAACGAGTCAGTG 60.543 47.826 0.00 0.00 35.77 3.66
682 689 2.288961 ACGACAAAACGAGTCAGTGT 57.711 45.000 0.00 0.00 35.77 3.55
683 690 3.425577 ACGACAAAACGAGTCAGTGTA 57.574 42.857 0.00 0.00 35.77 2.90
684 691 3.772932 ACGACAAAACGAGTCAGTGTAA 58.227 40.909 0.00 0.00 35.77 2.41
685 692 3.549070 ACGACAAAACGAGTCAGTGTAAC 59.451 43.478 0.00 0.00 35.77 2.50
686 693 3.795101 CGACAAAACGAGTCAGTGTAACT 59.205 43.478 0.00 0.00 41.75 2.24
687 694 4.266976 CGACAAAACGAGTCAGTGTAACTT 59.733 41.667 0.00 0.00 39.78 2.66
688 695 5.553952 CGACAAAACGAGTCAGTGTAACTTC 60.554 44.000 0.00 0.00 39.78 3.01
689 696 7.863030 CGACAAAACGAGTCAGTGTAACTTCA 61.863 42.308 0.00 0.00 39.78 3.02
690 697 9.531181 CGACAAAACGAGTCAGTGTAACTTCAG 62.531 44.444 0.00 0.00 39.78 3.02
783 791 1.529010 CCCCACAAGCTGCAGAACA 60.529 57.895 20.43 0.00 0.00 3.18
857 875 2.852495 TTCCTGGTTCCGATCGCAGC 62.852 60.000 10.32 8.65 0.00 5.25
892 910 2.415010 CCTGCCATCTCGTCCTCG 59.585 66.667 0.00 0.00 38.55 4.63
893 911 2.418910 CCTGCCATCTCGTCCTCGT 61.419 63.158 0.00 0.00 38.33 4.18
895 913 1.657751 CTGCCATCTCGTCCTCGTCA 61.658 60.000 0.00 0.00 38.33 4.35
1008 1085 0.254747 GGAATCGGTGAATGGGTCCA 59.745 55.000 0.00 0.00 0.00 4.02
1278 1355 1.299926 CTACGGCCTCATGGTACGC 60.300 63.158 0.00 0.00 38.65 4.42
1279 1356 3.128632 TACGGCCTCATGGTACGCG 62.129 63.158 3.53 3.53 38.65 6.01
1835 1935 1.521681 GTACATCGTGCTGAGCCCC 60.522 63.158 0.23 0.00 0.00 5.80
2031 2132 2.810650 CCGTCTGGTATGTAGCAACTC 58.189 52.381 0.00 0.00 32.78 3.01
2042 2153 2.101750 TGTAGCAACTCAGAACGAACCA 59.898 45.455 0.00 0.00 0.00 3.67
2045 2156 2.808543 AGCAACTCAGAACGAACCAATC 59.191 45.455 0.00 0.00 0.00 2.67
2073 2185 3.245519 GTCCTCGAGTCTTTTGTGTGTTC 59.754 47.826 12.31 0.00 0.00 3.18
2108 2220 3.562141 CGTGTGACCAACTCCATGTTTTA 59.438 43.478 0.00 0.00 36.63 1.52
2186 2298 0.253044 AGGTCGGTGCATTGCATACT 59.747 50.000 15.49 6.20 41.91 2.12
2187 2299 1.094785 GGTCGGTGCATTGCATACTT 58.905 50.000 15.49 0.00 41.91 2.24
2188 2300 2.093181 AGGTCGGTGCATTGCATACTTA 60.093 45.455 15.49 0.15 41.91 2.24
2189 2301 2.680841 GGTCGGTGCATTGCATACTTAA 59.319 45.455 15.49 0.00 41.91 1.85
2190 2302 3.486875 GGTCGGTGCATTGCATACTTAAC 60.487 47.826 15.49 7.62 41.91 2.01
2191 2303 3.374058 GTCGGTGCATTGCATACTTAACT 59.626 43.478 15.49 0.00 41.91 2.24
2192 2304 3.373748 TCGGTGCATTGCATACTTAACTG 59.626 43.478 15.49 5.20 41.91 3.16
2193 2305 3.126858 CGGTGCATTGCATACTTAACTGT 59.873 43.478 15.49 0.00 41.91 3.55
2194 2306 4.414852 GGTGCATTGCATACTTAACTGTG 58.585 43.478 15.49 0.00 41.91 3.66
2196 2308 3.119531 TGCATTGCATACTTAACTGTGGC 60.120 43.478 7.38 0.00 31.71 5.01
2198 2310 2.465860 TGCATACTTAACTGTGGCGT 57.534 45.000 0.00 0.00 0.00 5.68
2199 2311 3.596310 TGCATACTTAACTGTGGCGTA 57.404 42.857 0.00 0.00 0.00 4.42
2200 2312 3.517602 TGCATACTTAACTGTGGCGTAG 58.482 45.455 0.00 0.00 0.00 3.51
2201 2313 2.864343 GCATACTTAACTGTGGCGTAGG 59.136 50.000 0.00 0.00 0.00 3.18
2202 2314 3.454375 CATACTTAACTGTGGCGTAGGG 58.546 50.000 0.00 0.00 0.00 3.53
2203 2315 1.636148 ACTTAACTGTGGCGTAGGGA 58.364 50.000 0.00 0.00 0.00 4.20
2204 2316 1.274447 ACTTAACTGTGGCGTAGGGAC 59.726 52.381 0.00 0.00 0.00 4.46
2205 2317 1.274167 CTTAACTGTGGCGTAGGGACA 59.726 52.381 0.00 0.00 0.00 4.02
2206 2318 1.563924 TAACTGTGGCGTAGGGACAT 58.436 50.000 0.00 0.00 34.91 3.06
2207 2319 0.036388 AACTGTGGCGTAGGGACATG 60.036 55.000 0.00 0.00 34.91 3.21
2208 2320 1.192146 ACTGTGGCGTAGGGACATGT 61.192 55.000 0.00 0.00 34.91 3.21
2209 2321 0.460284 CTGTGGCGTAGGGACATGTC 60.460 60.000 17.91 17.91 34.91 3.06
2219 2331 4.101448 GACATGTCCCGCTGGCCT 62.101 66.667 15.31 0.00 0.00 5.19
2220 2332 4.415150 ACATGTCCCGCTGGCCTG 62.415 66.667 3.32 4.26 0.00 4.85
2221 2333 4.100084 CATGTCCCGCTGGCCTGA 62.100 66.667 14.77 0.00 0.00 3.86
2222 2334 3.329889 ATGTCCCGCTGGCCTGAA 61.330 61.111 14.77 0.00 0.00 3.02
2223 2335 2.905996 ATGTCCCGCTGGCCTGAAA 61.906 57.895 14.77 0.00 0.00 2.69
2224 2336 2.282180 GTCCCGCTGGCCTGAAAA 60.282 61.111 14.77 0.00 0.00 2.29
2225 2337 2.282180 TCCCGCTGGCCTGAAAAC 60.282 61.111 14.77 0.00 0.00 2.43
2226 2338 2.597217 CCCGCTGGCCTGAAAACA 60.597 61.111 14.77 0.00 0.00 2.83
2227 2339 1.978617 CCCGCTGGCCTGAAAACAT 60.979 57.895 14.77 0.00 0.00 2.71
2228 2340 1.535204 CCCGCTGGCCTGAAAACATT 61.535 55.000 14.77 0.00 0.00 2.71
2229 2341 0.318120 CCGCTGGCCTGAAAACATTT 59.682 50.000 14.77 0.00 0.00 2.32
2230 2342 1.543802 CCGCTGGCCTGAAAACATTTA 59.456 47.619 14.77 0.00 0.00 1.40
2231 2343 2.595386 CGCTGGCCTGAAAACATTTAC 58.405 47.619 14.77 0.00 0.00 2.01
2232 2344 2.228822 CGCTGGCCTGAAAACATTTACT 59.771 45.455 14.77 0.00 0.00 2.24
2233 2345 3.438781 CGCTGGCCTGAAAACATTTACTA 59.561 43.478 14.77 0.00 0.00 1.82
2234 2346 4.437390 CGCTGGCCTGAAAACATTTACTAG 60.437 45.833 14.77 0.00 0.00 2.57
2235 2347 4.675408 GCTGGCCTGAAAACATTTACTAGC 60.675 45.833 14.77 0.00 0.00 3.42
2236 2348 4.402829 TGGCCTGAAAACATTTACTAGCA 58.597 39.130 3.32 0.00 0.00 3.49
2237 2349 4.217550 TGGCCTGAAAACATTTACTAGCAC 59.782 41.667 3.32 0.00 0.00 4.40
2238 2350 4.217550 GGCCTGAAAACATTTACTAGCACA 59.782 41.667 0.00 0.00 0.00 4.57
2239 2351 5.393962 GCCTGAAAACATTTACTAGCACAG 58.606 41.667 0.00 0.00 0.00 3.66
2240 2352 5.393962 CCTGAAAACATTTACTAGCACAGC 58.606 41.667 0.00 0.00 0.00 4.40
2241 2353 5.371115 TGAAAACATTTACTAGCACAGCC 57.629 39.130 0.00 0.00 0.00 4.85
2242 2354 5.070001 TGAAAACATTTACTAGCACAGCCT 58.930 37.500 0.00 0.00 0.00 4.58
2243 2355 5.048782 TGAAAACATTTACTAGCACAGCCTG 60.049 40.000 0.00 0.00 0.00 4.85
2244 2356 3.703001 ACATTTACTAGCACAGCCTGT 57.297 42.857 0.00 0.00 0.00 4.00
2245 2357 4.021102 ACATTTACTAGCACAGCCTGTT 57.979 40.909 0.00 0.00 0.00 3.16
2246 2358 4.398319 ACATTTACTAGCACAGCCTGTTT 58.602 39.130 0.00 0.00 0.00 2.83
2247 2359 4.455877 ACATTTACTAGCACAGCCTGTTTC 59.544 41.667 0.00 0.00 0.00 2.78
2248 2360 2.762535 TACTAGCACAGCCTGTTTCC 57.237 50.000 0.00 0.00 0.00 3.13
2249 2361 1.059913 ACTAGCACAGCCTGTTTCCT 58.940 50.000 0.00 0.00 0.00 3.36
2250 2362 1.421646 ACTAGCACAGCCTGTTTCCTT 59.578 47.619 0.00 0.00 0.00 3.36
2251 2363 1.808945 CTAGCACAGCCTGTTTCCTTG 59.191 52.381 0.00 0.00 0.00 3.61
2252 2364 0.183492 AGCACAGCCTGTTTCCTTGA 59.817 50.000 0.00 0.00 0.00 3.02
2253 2365 0.595095 GCACAGCCTGTTTCCTTGAG 59.405 55.000 0.00 0.00 0.00 3.02
2254 2366 0.595095 CACAGCCTGTTTCCTTGAGC 59.405 55.000 0.00 0.00 0.00 4.26
2266 2393 0.167470 CCTTGAGCGTTGTCAGCATG 59.833 55.000 0.00 0.00 37.01 4.06
2267 2394 0.870393 CTTGAGCGTTGTCAGCATGT 59.130 50.000 0.00 0.00 37.40 3.21
2268 2395 0.587768 TTGAGCGTTGTCAGCATGTG 59.412 50.000 0.00 0.00 37.40 3.21
2270 2397 1.844771 GAGCGTTGTCAGCATGTGCA 61.845 55.000 7.83 0.00 45.16 4.57
2272 2399 0.387622 GCGTTGTCAGCATGTGCATT 60.388 50.000 7.83 0.00 45.16 3.56
2273 2400 1.609932 CGTTGTCAGCATGTGCATTC 58.390 50.000 7.83 0.00 45.16 2.67
2274 2401 1.069091 CGTTGTCAGCATGTGCATTCA 60.069 47.619 7.83 0.45 45.16 2.57
2278 2405 2.227149 TGTCAGCATGTGCATTCAGTTC 59.773 45.455 7.83 0.00 45.16 3.01
2279 2406 1.814394 TCAGCATGTGCATTCAGTTCC 59.186 47.619 7.83 0.00 45.16 3.62
2280 2407 1.542472 CAGCATGTGCATTCAGTTCCA 59.458 47.619 7.83 0.00 45.16 3.53
2286 2413 3.220940 TGTGCATTCAGTTCCATCAACA 58.779 40.909 0.00 0.00 37.48 3.33
2287 2414 3.635836 TGTGCATTCAGTTCCATCAACAA 59.364 39.130 0.00 0.00 37.48 2.83
2288 2415 4.099113 TGTGCATTCAGTTCCATCAACAAA 59.901 37.500 0.00 0.00 37.48 2.83
2289 2416 5.049167 GTGCATTCAGTTCCATCAACAAAA 58.951 37.500 0.00 0.00 37.48 2.44
2290 2417 5.176223 GTGCATTCAGTTCCATCAACAAAAG 59.824 40.000 0.00 0.00 37.48 2.27
2291 2418 5.163426 TGCATTCAGTTCCATCAACAAAAGT 60.163 36.000 0.00 0.00 37.48 2.66
2292 2419 6.040278 TGCATTCAGTTCCATCAACAAAAGTA 59.960 34.615 0.00 0.00 37.48 2.24
2293 2420 7.092716 GCATTCAGTTCCATCAACAAAAGTAT 58.907 34.615 0.00 0.00 37.48 2.12
2294 2421 7.274250 GCATTCAGTTCCATCAACAAAAGTATC 59.726 37.037 0.00 0.00 37.48 2.24
2295 2422 8.517878 CATTCAGTTCCATCAACAAAAGTATCT 58.482 33.333 0.00 0.00 37.48 1.98
2296 2423 7.439157 TCAGTTCCATCAACAAAAGTATCTG 57.561 36.000 0.00 0.00 37.48 2.90
2297 2424 6.430925 TCAGTTCCATCAACAAAAGTATCTGG 59.569 38.462 0.00 0.00 37.48 3.86
2298 2425 5.183904 AGTTCCATCAACAAAAGTATCTGGC 59.816 40.000 0.00 0.00 37.48 4.85
2299 2426 4.661222 TCCATCAACAAAAGTATCTGGCA 58.339 39.130 0.00 0.00 0.00 4.92
2300 2427 4.458989 TCCATCAACAAAAGTATCTGGCAC 59.541 41.667 0.00 0.00 0.00 5.01
2301 2428 4.380867 CCATCAACAAAAGTATCTGGCACC 60.381 45.833 0.00 0.00 0.00 5.01
2302 2429 4.098914 TCAACAAAAGTATCTGGCACCT 57.901 40.909 0.00 0.00 0.00 4.00
2303 2430 3.820467 TCAACAAAAGTATCTGGCACCTG 59.180 43.478 0.00 0.00 0.00 4.00
2304 2431 3.788227 ACAAAAGTATCTGGCACCTGA 57.212 42.857 0.00 0.00 0.00 3.86
2305 2432 4.307032 ACAAAAGTATCTGGCACCTGAT 57.693 40.909 12.91 12.91 38.06 2.90
2306 2433 4.012374 ACAAAAGTATCTGGCACCTGATG 58.988 43.478 16.77 5.47 36.33 3.07
2307 2434 4.263462 ACAAAAGTATCTGGCACCTGATGA 60.263 41.667 16.77 1.88 36.33 2.92
2308 2435 4.785346 AAAGTATCTGGCACCTGATGAT 57.215 40.909 16.77 4.89 36.33 2.45
2309 2436 3.766068 AGTATCTGGCACCTGATGATG 57.234 47.619 16.77 0.00 36.33 3.07
2310 2437 3.311990 AGTATCTGGCACCTGATGATGA 58.688 45.455 16.77 0.00 36.33 2.92
2311 2438 3.908733 AGTATCTGGCACCTGATGATGAT 59.091 43.478 16.77 0.00 36.33 2.45
2312 2439 2.924757 TCTGGCACCTGATGATGATC 57.075 50.000 0.00 0.00 0.00 2.92
2313 2440 1.419012 TCTGGCACCTGATGATGATCC 59.581 52.381 0.00 0.00 0.00 3.36
2314 2441 1.420514 CTGGCACCTGATGATGATCCT 59.579 52.381 0.00 0.00 0.00 3.24
2315 2442 1.142262 TGGCACCTGATGATGATCCTG 59.858 52.381 0.00 0.00 0.00 3.86
2316 2443 1.419012 GGCACCTGATGATGATCCTGA 59.581 52.381 0.00 0.00 0.00 3.86
2317 2444 2.158711 GGCACCTGATGATGATCCTGAA 60.159 50.000 0.00 0.00 0.00 3.02
2318 2445 3.498121 GGCACCTGATGATGATCCTGAAT 60.498 47.826 0.00 0.00 0.00 2.57
2319 2446 3.502595 GCACCTGATGATGATCCTGAATG 59.497 47.826 0.00 0.00 0.00 2.67
2320 2447 4.072839 CACCTGATGATGATCCTGAATGG 58.927 47.826 0.00 0.00 37.10 3.16
2339 2466 4.032960 TGGATTACCATCTTGCACAACT 57.967 40.909 0.00 0.00 41.77 3.16
2340 2467 5.172687 TGGATTACCATCTTGCACAACTA 57.827 39.130 0.00 0.00 41.77 2.24
2341 2468 5.185454 TGGATTACCATCTTGCACAACTAG 58.815 41.667 0.00 0.00 41.77 2.57
2342 2469 4.576463 GGATTACCATCTTGCACAACTAGG 59.424 45.833 0.00 0.00 35.97 3.02
2343 2470 4.901197 TTACCATCTTGCACAACTAGGA 57.099 40.909 0.00 0.00 0.00 2.94
2344 2471 3.340814 ACCATCTTGCACAACTAGGAG 57.659 47.619 0.00 0.00 0.00 3.69
2345 2472 2.639839 ACCATCTTGCACAACTAGGAGT 59.360 45.455 0.00 0.00 0.00 3.85
2346 2473 3.838317 ACCATCTTGCACAACTAGGAGTA 59.162 43.478 0.00 0.00 0.00 2.59
2347 2474 4.081420 ACCATCTTGCACAACTAGGAGTAG 60.081 45.833 0.00 0.00 0.00 2.57
2348 2475 4.160439 CCATCTTGCACAACTAGGAGTAGA 59.840 45.833 0.00 0.00 0.00 2.59
2349 2476 5.163364 CCATCTTGCACAACTAGGAGTAGAT 60.163 44.000 0.00 0.00 0.00 1.98
2350 2477 5.584253 TCTTGCACAACTAGGAGTAGATC 57.416 43.478 0.00 0.00 0.00 2.75
2351 2478 5.016831 TCTTGCACAACTAGGAGTAGATCA 58.983 41.667 0.00 0.00 0.00 2.92
2352 2479 5.658634 TCTTGCACAACTAGGAGTAGATCAT 59.341 40.000 0.00 0.00 0.00 2.45
2353 2480 6.833933 TCTTGCACAACTAGGAGTAGATCATA 59.166 38.462 0.00 0.00 0.00 2.15
2354 2481 7.342026 TCTTGCACAACTAGGAGTAGATCATAA 59.658 37.037 0.00 0.00 0.00 1.90
2355 2482 7.603180 TGCACAACTAGGAGTAGATCATAAT 57.397 36.000 0.00 0.00 0.00 1.28
2356 2483 7.661968 TGCACAACTAGGAGTAGATCATAATC 58.338 38.462 0.00 0.00 0.00 1.75
2357 2484 7.287696 TGCACAACTAGGAGTAGATCATAATCA 59.712 37.037 0.00 0.00 34.07 2.57
2358 2485 8.310382 GCACAACTAGGAGTAGATCATAATCAT 58.690 37.037 0.00 0.00 34.07 2.45
2359 2486 9.853555 CACAACTAGGAGTAGATCATAATCATC 57.146 37.037 0.00 0.00 34.07 2.92
2360 2487 9.821240 ACAACTAGGAGTAGATCATAATCATCT 57.179 33.333 0.00 0.00 34.07 2.90
2386 2513 9.801873 TTTATTAGCTCAATTAATTTGCCAGAC 57.198 29.630 15.37 0.78 35.16 3.51
2389 2516 6.350629 AGCTCAATTAATTTGCCAGACTTT 57.649 33.333 15.37 0.00 35.16 2.66
2393 2520 6.286758 TCAATTAATTTGCCAGACTTTGCAA 58.713 32.000 0.00 0.00 45.12 4.08
2402 2529 4.830046 TGCCAGACTTTGCAACCTAAAATA 59.170 37.500 0.00 0.00 33.87 1.40
2410 2537 3.088532 TGCAACCTAAAATACTGGCCTG 58.911 45.455 8.29 8.29 0.00 4.85
2414 2541 3.190439 ACCTAAAATACTGGCCTGGTCT 58.810 45.455 14.82 0.00 0.00 3.85
2416 2543 3.199946 CCTAAAATACTGGCCTGGTCTGA 59.800 47.826 14.82 0.00 0.00 3.27
2417 2544 4.141390 CCTAAAATACTGGCCTGGTCTGAT 60.141 45.833 14.82 0.00 0.00 2.90
2429 2602 4.439700 GCCTGGTCTGATTTGATCAATGTG 60.440 45.833 9.40 0.82 39.11 3.21
2432 2605 4.701651 TGGTCTGATTTGATCAATGTGGAC 59.298 41.667 9.40 14.25 39.11 4.02
2433 2606 4.096984 GGTCTGATTTGATCAATGTGGACC 59.903 45.833 22.92 22.92 40.26 4.46
2441 2614 3.055167 TGATCAATGTGGACCTTGTCGAT 60.055 43.478 0.00 0.00 32.65 3.59
2541 2714 2.659897 CCGCGCTCATAGCAGTCC 60.660 66.667 5.56 0.00 42.58 3.85
2692 4324 1.873591 GCCCGTGCTATCAGGTAAATG 59.126 52.381 0.00 0.00 33.53 2.32
2699 4331 7.012894 CCCGTGCTATCAGGTAAATGAATAAAA 59.987 37.037 0.00 0.00 31.76 1.52
2703 4335 9.639563 TGCTATCAGGTAAATGAATAAAATGGA 57.360 29.630 0.00 0.00 31.76 3.41
2749 4381 9.647918 AGTCTAGATACAATCATCTTTAGGACA 57.352 33.333 0.00 0.00 36.63 4.02
2758 4390 9.178758 ACAATCATCTTTAGGACAAGTATTTCC 57.821 33.333 0.00 0.00 0.00 3.13
2759 4391 8.338259 CAATCATCTTTAGGACAAGTATTTCCG 58.662 37.037 0.00 0.00 36.95 4.30
2760 4392 6.346096 TCATCTTTAGGACAAGTATTTCCGG 58.654 40.000 0.00 0.00 36.95 5.14
2761 4393 6.155565 TCATCTTTAGGACAAGTATTTCCGGA 59.844 38.462 0.00 0.00 36.95 5.14
2762 4394 5.727434 TCTTTAGGACAAGTATTTCCGGAC 58.273 41.667 1.83 0.00 36.95 4.79
2763 4395 5.246656 TCTTTAGGACAAGTATTTCCGGACA 59.753 40.000 1.83 0.00 36.95 4.02
2764 4396 5.486735 TTAGGACAAGTATTTCCGGACAA 57.513 39.130 1.83 2.11 36.95 3.18
2765 4397 4.360951 AGGACAAGTATTTCCGGACAAA 57.639 40.909 1.83 0.00 36.95 2.83
2766 4398 4.324267 AGGACAAGTATTTCCGGACAAAG 58.676 43.478 1.83 0.00 36.95 2.77
2767 4399 3.439129 GGACAAGTATTTCCGGACAAAGG 59.561 47.826 1.83 0.00 0.00 3.11
2768 4400 3.418047 ACAAGTATTTCCGGACAAAGGG 58.582 45.455 1.83 0.00 0.00 3.95
2769 4401 3.073356 ACAAGTATTTCCGGACAAAGGGA 59.927 43.478 1.83 0.00 0.00 4.20
2770 4402 3.629142 AGTATTTCCGGACAAAGGGAG 57.371 47.619 1.83 0.00 33.01 4.30
2771 4403 2.910977 AGTATTTCCGGACAAAGGGAGT 59.089 45.455 1.83 0.00 33.01 3.85
2772 4404 4.098894 AGTATTTCCGGACAAAGGGAGTA 58.901 43.478 1.83 0.00 33.01 2.59
2773 4405 2.845363 TTTCCGGACAAAGGGAGTAC 57.155 50.000 1.83 0.00 33.01 2.73
2774 4406 0.604578 TTCCGGACAAAGGGAGTACG 59.395 55.000 1.83 0.00 42.81 3.67
2775 4407 0.540365 TCCGGACAAAGGGAGTACGT 60.540 55.000 0.00 0.00 41.63 3.57
2776 4408 0.389426 CCGGACAAAGGGAGTACGTG 60.389 60.000 0.00 0.00 41.63 4.49
2777 4409 0.316204 CGGACAAAGGGAGTACGTGT 59.684 55.000 0.00 0.00 38.48 4.49
2778 4410 1.269936 CGGACAAAGGGAGTACGTGTT 60.270 52.381 0.00 0.00 38.48 3.32
2779 4411 2.030007 CGGACAAAGGGAGTACGTGTTA 60.030 50.000 0.00 0.00 38.48 2.41
2780 4412 3.552684 CGGACAAAGGGAGTACGTGTTAA 60.553 47.826 0.00 0.00 38.48 2.01
2788 4420 4.529377 AGGGAGTACGTGTTAAGGAATTCA 59.471 41.667 7.93 0.00 0.00 2.57
2789 4421 4.868734 GGGAGTACGTGTTAAGGAATTCAG 59.131 45.833 7.93 0.00 0.00 3.02
2815 4447 0.108019 AAAGTCTTGACCGGTGTCCC 59.892 55.000 14.63 0.00 41.01 4.46
2820 4452 2.048601 TCTTGACCGGTGTCCCTTTTA 58.951 47.619 14.63 0.00 41.01 1.52
2828 4461 1.609841 GGTGTCCCTTTTACTGACCCG 60.610 57.143 0.00 0.00 0.00 5.28
2961 4606 6.471233 TGACTATGGAATCAAGGTACTCTG 57.529 41.667 0.00 0.00 38.49 3.35
2986 4631 3.619038 GCTAGTAGCGCTGATTTCAAAGT 59.381 43.478 22.90 2.20 0.00 2.66
2987 4632 4.093556 GCTAGTAGCGCTGATTTCAAAGTT 59.906 41.667 22.90 0.00 0.00 2.66
2997 4642 6.418819 CGCTGATTTCAAAGTTTTGATTCACT 59.581 34.615 8.02 0.00 45.65 3.41
3019 4669 7.012989 TCACTAAAGATGGCAGAATCATCATTG 59.987 37.037 6.80 0.46 42.38 2.82
3086 4736 4.581077 TTGCATGTGTAATGAACTGCAA 57.419 36.364 3.84 3.84 44.61 4.08
3098 4748 5.943706 ATGAACTGCAATGATGATAGAGC 57.056 39.130 0.00 0.00 0.00 4.09
3150 4806 1.648467 GAGGCACGCTCATCCAAACC 61.648 60.000 0.00 0.00 0.00 3.27
3156 4812 3.563808 GCACGCTCATCCAAACCATTATA 59.436 43.478 0.00 0.00 0.00 0.98
3175 4831 8.950210 CCATTATACTATTGTGGATCACATTCC 58.050 37.037 1.37 0.00 44.16 3.01
3197 4853 3.195825 CGAACTGACTGGAATAAGGAGGT 59.804 47.826 0.00 0.00 0.00 3.85
3198 4854 4.401519 CGAACTGACTGGAATAAGGAGGTA 59.598 45.833 0.00 0.00 0.00 3.08
3199 4855 5.662456 GAACTGACTGGAATAAGGAGGTAC 58.338 45.833 0.00 0.00 0.00 3.34
3296 4953 3.565764 TTCCCCAATCTCACATGCTAG 57.434 47.619 0.00 0.00 0.00 3.42
3321 4978 3.709987 GCATCTAAATCATGTGCCAACC 58.290 45.455 0.00 0.00 0.00 3.77
3324 4981 3.088532 TCTAAATCATGTGCCAACCCAC 58.911 45.455 0.00 0.00 36.28 4.61
3411 5068 8.489489 TCATCTGTCCTCTCTTAATTTAGCATT 58.511 33.333 0.00 0.00 0.00 3.56
3614 5272 3.610040 ATACCAAACAGACATCGCAGA 57.390 42.857 0.00 0.00 45.75 4.26
3638 5297 6.465084 ACAAACCTAACATCTAAGACCTGAC 58.535 40.000 0.00 0.00 0.00 3.51
3736 5395 2.159170 ACCGCTCTATCTTCAGAACTGC 60.159 50.000 0.00 0.00 0.00 4.40
3855 5514 1.831106 TCGCCATTGATACACCTCAGT 59.169 47.619 0.00 0.00 0.00 3.41
3963 5622 1.287815 CGTAGCACCTGTCGGTCAA 59.712 57.895 0.00 0.00 43.24 3.18
4451 6110 4.704833 CAGACCCAGGCACCACCG 62.705 72.222 0.00 0.00 46.52 4.94
4601 6262 2.802792 CCGTCGGGATAACTCGCA 59.197 61.111 2.34 0.00 40.15 5.10
4870 6536 3.878519 CGACGAGGGAGGACGAGC 61.879 72.222 0.00 0.00 0.00 5.03
5147 6815 1.287425 GCCCGGAGAAGATTAACGTG 58.713 55.000 0.73 0.00 0.00 4.49
5238 6906 8.593945 TTTTTAGGAAATGGCATTATCTCAGT 57.406 30.769 14.05 0.00 0.00 3.41
5239 6907 8.593945 TTTTAGGAAATGGCATTATCTCAGTT 57.406 30.769 14.05 0.00 0.00 3.16
5240 6908 8.593945 TTTAGGAAATGGCATTATCTCAGTTT 57.406 30.769 14.05 0.00 0.00 2.66
5241 6909 8.593945 TTAGGAAATGGCATTATCTCAGTTTT 57.406 30.769 14.05 0.00 0.00 2.43
5242 6910 7.486407 AGGAAATGGCATTATCTCAGTTTTT 57.514 32.000 14.05 0.00 0.00 1.94
5324 6992 8.408043 TCAATCAAGTTTACAATGAGATGGTT 57.592 30.769 0.00 0.00 0.00 3.67
5341 7009 2.028112 TGGTTCTCCTTGAGGATTCACG 60.028 50.000 0.00 0.00 44.46 4.35
5343 7011 3.557264 GGTTCTCCTTGAGGATTCACGTT 60.557 47.826 0.00 0.00 44.46 3.99
5362 7030 4.095185 ACGTTCTATTCTGAACTCTCCTCG 59.905 45.833 0.00 0.00 42.82 4.63
5399 8368 2.436109 GGCTTGGACTGGCCTTGA 59.564 61.111 3.32 0.00 44.48 3.02
5411 8380 0.811281 GGCCTTGAAGAACGGAATGG 59.189 55.000 0.00 0.00 0.00 3.16
5432 8401 1.219469 AGTAAACCAGGGGCCTTGTTT 59.781 47.619 15.16 16.81 42.20 2.83
5433 8402 1.343142 GTAAACCAGGGGCCTTGTTTG 59.657 52.381 15.16 1.77 40.54 2.93
5611 10354 2.175035 TTGTCCCGTCCGTTGATCCC 62.175 60.000 0.00 0.00 0.00 3.85
5674 10420 0.465460 GCCCATCAAGGCGGTATCAA 60.465 55.000 0.00 0.00 44.57 2.57
5717 10463 0.246635 CCGACCTGATCAAACGGTCT 59.753 55.000 23.11 0.00 43.88 3.85
5728 10474 2.037902 TCAAACGGTCTCACCAATGCTA 59.962 45.455 0.00 0.00 38.47 3.49
5761 10507 4.488911 AGATCCGGGGAGGCAGCT 62.489 66.667 0.00 0.00 40.77 4.24
5807 10557 8.151141 ACTCGTATATTCGTCAGAAATCACTA 57.849 34.615 1.52 0.00 40.15 2.74
5809 10559 9.447040 CTCGTATATTCGTCAGAAATCACTAAA 57.553 33.333 1.52 0.00 40.15 1.85
5810 10560 9.791820 TCGTATATTCGTCAGAAATCACTAAAA 57.208 29.630 1.52 0.00 40.15 1.52
5813 10563 6.743575 ATTCGTCAGAAATCACTAAAAGGG 57.256 37.500 0.00 0.00 40.15 3.95
5816 10578 6.292923 TCGTCAGAAATCACTAAAAGGGAAA 58.707 36.000 0.00 0.00 27.39 3.13
5847 10616 9.847224 ATGAACTTGATTACGTATATTTCCCTT 57.153 29.630 0.00 0.00 0.00 3.95
5850 10619 6.927381 ACTTGATTACGTATATTTCCCTTCGG 59.073 38.462 0.00 0.00 0.00 4.30
5866 10635 0.321210 TCGGAAAGGAAGCGCAATCA 60.321 50.000 11.47 0.00 0.00 2.57
5882 10651 3.244156 CAATCAAGCTGCACGCAATTTA 58.756 40.909 1.02 0.00 42.61 1.40
5883 10652 3.788333 ATCAAGCTGCACGCAATTTAT 57.212 38.095 1.02 0.00 42.61 1.40
5884 10653 3.135414 TCAAGCTGCACGCAATTTATC 57.865 42.857 1.02 0.00 42.61 1.75
5887 10660 3.574284 AGCTGCACGCAATTTATCAAA 57.426 38.095 1.02 0.00 42.61 2.69
6069 10847 1.172812 ACCTTTTCTCGTGCCTTGCC 61.173 55.000 0.00 0.00 0.00 4.52
6072 10850 0.108585 TTTTCTCGTGCCTTGCCTCT 59.891 50.000 0.00 0.00 0.00 3.69
6073 10851 0.603707 TTTCTCGTGCCTTGCCTCTG 60.604 55.000 0.00 0.00 0.00 3.35
6074 10852 3.123620 CTCGTGCCTTGCCTCTGC 61.124 66.667 0.00 0.00 38.26 4.26
6075 10853 3.602513 CTCGTGCCTTGCCTCTGCT 62.603 63.158 0.00 0.00 38.71 4.24
6076 10854 2.670934 CGTGCCTTGCCTCTGCTT 60.671 61.111 0.00 0.00 38.71 3.91
6077 10855 2.684843 CGTGCCTTGCCTCTGCTTC 61.685 63.158 0.00 0.00 38.71 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
205 206 1.870383 CGATTTTTCCGGCGTTCCA 59.130 52.632 6.01 0.00 0.00 3.53
228 230 4.640690 AGCCTCTCCACCACCGGT 62.641 66.667 0.00 0.00 35.62 5.28
395 397 4.248842 CACGTCTGGCCCACACCA 62.249 66.667 0.00 0.00 38.29 4.17
480 483 1.294138 CCGGCTCGGTCCACTTTTA 59.706 57.895 5.56 0.00 42.73 1.52
499 502 1.476110 CCTTCAGGACACCGAAAACCA 60.476 52.381 0.00 0.00 37.39 3.67
502 505 3.325425 TCATACCTTCAGGACACCGAAAA 59.675 43.478 0.00 0.00 38.94 2.29
516 519 0.696501 AAACGCCCCAGTCATACCTT 59.303 50.000 0.00 0.00 0.00 3.50
521 524 1.241315 CCGAAAAACGCCCCAGTCAT 61.241 55.000 0.00 0.00 41.07 3.06
522 525 1.894756 CCGAAAAACGCCCCAGTCA 60.895 57.895 0.00 0.00 41.07 3.41
592 599 4.024302 GCGTTAAAACACAGGAGTTAAGCT 60.024 41.667 0.00 0.00 0.00 3.74
593 600 4.216731 GCGTTAAAACACAGGAGTTAAGC 58.783 43.478 0.00 0.00 0.00 3.09
594 601 5.412526 TGCGTTAAAACACAGGAGTTAAG 57.587 39.130 0.00 0.00 0.00 1.85
595 602 5.753744 CATGCGTTAAAACACAGGAGTTAA 58.246 37.500 0.00 0.00 0.00 2.01
599 606 2.226437 AGCATGCGTTAAAACACAGGAG 59.774 45.455 13.01 0.00 0.00 3.69
600 607 2.226330 AGCATGCGTTAAAACACAGGA 58.774 42.857 13.01 0.00 0.00 3.86
601 608 2.704725 AGCATGCGTTAAAACACAGG 57.295 45.000 13.01 0.00 0.00 4.00
602 609 3.888934 AGAAGCATGCGTTAAAACACAG 58.111 40.909 13.01 0.00 0.00 3.66
603 610 3.980646 AGAAGCATGCGTTAAAACACA 57.019 38.095 13.01 0.00 0.00 3.72
604 611 5.458779 AGAAAAGAAGCATGCGTTAAAACAC 59.541 36.000 13.01 0.00 0.00 3.32
605 612 5.587289 AGAAAAGAAGCATGCGTTAAAACA 58.413 33.333 13.01 0.00 0.00 2.83
606 613 5.117135 GGAGAAAAGAAGCATGCGTTAAAAC 59.883 40.000 13.01 3.79 0.00 2.43
607 614 5.219633 GGAGAAAAGAAGCATGCGTTAAAA 58.780 37.500 13.01 0.00 0.00 1.52
608 615 4.320935 GGGAGAAAAGAAGCATGCGTTAAA 60.321 41.667 13.01 0.00 0.00 1.52
609 616 3.190535 GGGAGAAAAGAAGCATGCGTTAA 59.809 43.478 13.01 0.00 0.00 2.01
610 617 2.747446 GGGAGAAAAGAAGCATGCGTTA 59.253 45.455 13.01 0.00 0.00 3.18
611 618 1.541588 GGGAGAAAAGAAGCATGCGTT 59.458 47.619 13.01 7.08 0.00 4.84
612 619 1.168714 GGGAGAAAAGAAGCATGCGT 58.831 50.000 13.01 9.49 0.00 5.24
613 620 0.453390 GGGGAGAAAAGAAGCATGCG 59.547 55.000 13.01 0.00 0.00 4.73
614 621 0.820226 GGGGGAGAAAAGAAGCATGC 59.180 55.000 10.51 10.51 0.00 4.06
615 622 1.821136 GTGGGGGAGAAAAGAAGCATG 59.179 52.381 0.00 0.00 0.00 4.06
616 623 1.428912 TGTGGGGGAGAAAAGAAGCAT 59.571 47.619 0.00 0.00 0.00 3.79
617 624 0.850100 TGTGGGGGAGAAAAGAAGCA 59.150 50.000 0.00 0.00 0.00 3.91
618 625 1.889170 CTTGTGGGGGAGAAAAGAAGC 59.111 52.381 0.00 0.00 0.00 3.86
619 626 1.889170 GCTTGTGGGGGAGAAAAGAAG 59.111 52.381 0.00 0.00 0.00 2.85
620 627 1.499007 AGCTTGTGGGGGAGAAAAGAA 59.501 47.619 0.00 0.00 0.00 2.52
621 628 1.149101 AGCTTGTGGGGGAGAAAAGA 58.851 50.000 0.00 0.00 0.00 2.52
622 629 1.251251 CAGCTTGTGGGGGAGAAAAG 58.749 55.000 0.00 0.00 0.00 2.27
623 630 0.827507 GCAGCTTGTGGGGGAGAAAA 60.828 55.000 0.00 0.00 0.00 2.29
624 631 1.228552 GCAGCTTGTGGGGGAGAAA 60.229 57.895 0.00 0.00 0.00 2.52
625 632 2.436109 GCAGCTTGTGGGGGAGAA 59.564 61.111 0.00 0.00 0.00 2.87
626 633 4.020617 CGCAGCTTGTGGGGGAGA 62.021 66.667 0.00 0.00 35.43 3.71
642 649 2.325082 CCTTTGTCCTGGCGTTCCG 61.325 63.158 0.00 0.00 34.14 4.30
643 650 0.536460 TTCCTTTGTCCTGGCGTTCC 60.536 55.000 0.00 0.00 0.00 3.62
644 651 1.001706 GTTTCCTTTGTCCTGGCGTTC 60.002 52.381 0.00 0.00 0.00 3.95
645 652 1.029681 GTTTCCTTTGTCCTGGCGTT 58.970 50.000 0.00 0.00 0.00 4.84
646 653 1.164041 CGTTTCCTTTGTCCTGGCGT 61.164 55.000 0.00 0.00 0.00 5.68
647 654 0.882927 TCGTTTCCTTTGTCCTGGCG 60.883 55.000 0.00 0.00 0.00 5.69
648 655 0.591659 GTCGTTTCCTTTGTCCTGGC 59.408 55.000 0.00 0.00 0.00 4.85
649 656 1.961793 TGTCGTTTCCTTTGTCCTGG 58.038 50.000 0.00 0.00 0.00 4.45
650 657 4.102649 GTTTTGTCGTTTCCTTTGTCCTG 58.897 43.478 0.00 0.00 0.00 3.86
651 658 3.181504 CGTTTTGTCGTTTCCTTTGTCCT 60.182 43.478 0.00 0.00 0.00 3.85
652 659 3.103007 CGTTTTGTCGTTTCCTTTGTCC 58.897 45.455 0.00 0.00 0.00 4.02
653 660 4.006026 TCGTTTTGTCGTTTCCTTTGTC 57.994 40.909 0.00 0.00 0.00 3.18
654 661 3.437741 ACTCGTTTTGTCGTTTCCTTTGT 59.562 39.130 0.00 0.00 0.00 2.83
655 662 4.011058 ACTCGTTTTGTCGTTTCCTTTG 57.989 40.909 0.00 0.00 0.00 2.77
656 663 3.685756 TGACTCGTTTTGTCGTTTCCTTT 59.314 39.130 0.00 0.00 37.26 3.11
657 664 3.264104 TGACTCGTTTTGTCGTTTCCTT 58.736 40.909 0.00 0.00 37.26 3.36
658 665 2.864343 CTGACTCGTTTTGTCGTTTCCT 59.136 45.455 0.00 0.00 37.26 3.36
659 666 2.606272 ACTGACTCGTTTTGTCGTTTCC 59.394 45.455 0.00 0.00 37.26 3.13
660 667 3.061697 ACACTGACTCGTTTTGTCGTTTC 59.938 43.478 0.00 0.00 37.26 2.78
661 668 2.997986 ACACTGACTCGTTTTGTCGTTT 59.002 40.909 0.00 0.00 37.26 3.60
662 669 2.613691 ACACTGACTCGTTTTGTCGTT 58.386 42.857 0.00 0.00 37.26 3.85
663 670 2.288961 ACACTGACTCGTTTTGTCGT 57.711 45.000 0.00 0.00 37.26 4.34
664 671 3.795101 AGTTACACTGACTCGTTTTGTCG 59.205 43.478 0.00 0.00 37.26 4.35
665 672 5.290158 TGAAGTTACACTGACTCGTTTTGTC 59.710 40.000 0.00 0.00 35.21 3.18
666 673 5.172934 TGAAGTTACACTGACTCGTTTTGT 58.827 37.500 0.00 0.00 0.00 2.83
667 674 5.291128 ACTGAAGTTACACTGACTCGTTTTG 59.709 40.000 0.00 0.00 0.00 2.44
668 675 5.291128 CACTGAAGTTACACTGACTCGTTTT 59.709 40.000 0.00 0.00 0.00 2.43
669 676 4.804139 CACTGAAGTTACACTGACTCGTTT 59.196 41.667 0.00 0.00 0.00 3.60
670 677 4.142227 ACACTGAAGTTACACTGACTCGTT 60.142 41.667 0.00 0.00 0.00 3.85
671 678 3.380637 ACACTGAAGTTACACTGACTCGT 59.619 43.478 0.00 0.00 0.00 4.18
672 679 3.966154 ACACTGAAGTTACACTGACTCG 58.034 45.455 0.00 0.00 0.00 4.18
673 680 7.514747 CGTTAAACACTGAAGTTACACTGACTC 60.515 40.741 0.00 0.00 0.00 3.36
674 681 6.255020 CGTTAAACACTGAAGTTACACTGACT 59.745 38.462 0.00 0.00 0.00 3.41
675 682 6.254157 TCGTTAAACACTGAAGTTACACTGAC 59.746 38.462 0.00 0.00 0.00 3.51
676 683 6.331845 TCGTTAAACACTGAAGTTACACTGA 58.668 36.000 0.00 0.00 0.00 3.41
677 684 6.578020 TCGTTAAACACTGAAGTTACACTG 57.422 37.500 0.00 0.00 0.00 3.66
678 685 6.036408 GGTTCGTTAAACACTGAAGTTACACT 59.964 38.462 0.00 0.00 39.81 3.55
679 686 6.183360 TGGTTCGTTAAACACTGAAGTTACAC 60.183 38.462 0.00 0.00 39.81 2.90
680 687 5.873712 TGGTTCGTTAAACACTGAAGTTACA 59.126 36.000 0.00 0.00 39.81 2.41
681 688 6.348621 TGGTTCGTTAAACACTGAAGTTAC 57.651 37.500 0.00 0.00 39.81 2.50
682 689 6.981762 TTGGTTCGTTAAACACTGAAGTTA 57.018 33.333 0.00 0.00 39.81 2.24
683 690 5.883503 TTGGTTCGTTAAACACTGAAGTT 57.116 34.783 0.00 0.00 39.81 2.66
684 691 6.445357 AATTGGTTCGTTAAACACTGAAGT 57.555 33.333 0.00 0.00 39.81 3.01
685 692 6.970043 TCAAATTGGTTCGTTAAACACTGAAG 59.030 34.615 0.00 0.00 39.81 3.02
686 693 6.748198 GTCAAATTGGTTCGTTAAACACTGAA 59.252 34.615 0.00 0.00 39.81 3.02
687 694 6.259638 GTCAAATTGGTTCGTTAAACACTGA 58.740 36.000 0.00 0.00 39.81 3.41
688 695 5.457473 GGTCAAATTGGTTCGTTAAACACTG 59.543 40.000 0.00 0.00 39.81 3.66
689 696 5.584442 GGTCAAATTGGTTCGTTAAACACT 58.416 37.500 0.00 0.00 39.81 3.55
690 697 4.438471 CGGTCAAATTGGTTCGTTAAACAC 59.562 41.667 0.00 0.00 39.81 3.32
691 698 4.497674 CCGGTCAAATTGGTTCGTTAAACA 60.498 41.667 0.00 0.00 39.81 2.83
692 699 3.976306 CCGGTCAAATTGGTTCGTTAAAC 59.024 43.478 0.00 0.00 37.12 2.01
693 700 3.004524 CCCGGTCAAATTGGTTCGTTAAA 59.995 43.478 0.00 0.00 0.00 1.52
694 701 2.553172 CCCGGTCAAATTGGTTCGTTAA 59.447 45.455 0.00 0.00 0.00 2.01
695 702 2.152830 CCCGGTCAAATTGGTTCGTTA 58.847 47.619 0.00 0.00 0.00 3.18
696 703 0.955905 CCCGGTCAAATTGGTTCGTT 59.044 50.000 0.00 0.00 0.00 3.85
697 704 0.108963 TCCCGGTCAAATTGGTTCGT 59.891 50.000 0.00 0.00 0.00 3.85
698 705 1.400494 GATCCCGGTCAAATTGGTTCG 59.600 52.381 0.00 0.00 0.00 3.95
699 706 1.749063 GGATCCCGGTCAAATTGGTTC 59.251 52.381 0.00 0.00 0.00 3.62
738 745 1.578583 AGAAGCACGCGTTAAACACT 58.421 45.000 10.22 1.46 0.00 3.55
768 776 0.309922 CTGGTGTTCTGCAGCTTGTG 59.690 55.000 9.47 0.00 45.23 3.33
783 791 1.210967 TGTCGTTTCCTTTGTCCTGGT 59.789 47.619 0.00 0.00 0.00 4.00
857 875 0.600255 GGTGAAGTGACACTGTCCCG 60.600 60.000 9.33 0.00 40.22 5.14
859 877 1.871080 CAGGTGAAGTGACACTGTCC 58.129 55.000 9.33 11.65 40.22 4.02
1008 1085 3.740128 GACGCCGGCATGATCACCT 62.740 63.158 28.98 0.00 0.00 4.00
1227 1304 2.046314 CCGTTGTTGCCGAGGGAT 60.046 61.111 0.00 0.00 32.58 3.85
1278 1355 2.423898 ATACGGTGGAGTGGAGGCG 61.424 63.158 0.00 0.00 0.00 5.52
1279 1356 1.144057 CATACGGTGGAGTGGAGGC 59.856 63.158 0.00 0.00 0.00 4.70
1377 1466 3.200593 CATCCCGAGCTGCAGCAC 61.201 66.667 38.24 31.25 45.16 4.40
1711 1811 4.147449 CCCAGCTCATCGCCACGA 62.147 66.667 0.00 0.00 41.13 4.35
1835 1935 2.047844 CACGTCTCCCTGCACCTG 60.048 66.667 0.00 0.00 0.00 4.00
2021 2121 2.101750 TGGTTCGTTCTGAGTTGCTACA 59.898 45.455 0.13 0.00 0.00 2.74
2025 2125 2.411547 CGATTGGTTCGTTCTGAGTTGC 60.412 50.000 0.00 0.00 43.01 4.17
2042 2153 3.662247 AGACTCGAGGACAAAACGATT 57.338 42.857 18.41 0.00 35.58 3.34
2045 2156 3.308866 ACAAAAGACTCGAGGACAAAACG 59.691 43.478 18.41 0.56 0.00 3.60
2073 2185 2.216488 GGTCACACGATCATCGAATTCG 59.784 50.000 21.78 21.78 43.74 3.34
2108 2220 0.969149 TGACTGAATCGAGGTGCTGT 59.031 50.000 0.00 0.00 0.00 4.40
2166 2278 1.094785 GTATGCAATGCACCGACCTT 58.905 50.000 11.23 0.00 43.04 3.50
2186 2298 1.340088 TGTCCCTACGCCACAGTTAA 58.660 50.000 0.00 0.00 0.00 2.01
2187 2299 1.206132 CATGTCCCTACGCCACAGTTA 59.794 52.381 0.00 0.00 0.00 2.24
2188 2300 0.036388 CATGTCCCTACGCCACAGTT 60.036 55.000 0.00 0.00 0.00 3.16
2189 2301 1.192146 ACATGTCCCTACGCCACAGT 61.192 55.000 0.00 0.00 0.00 3.55
2190 2302 0.460284 GACATGTCCCTACGCCACAG 60.460 60.000 15.31 0.00 0.00 3.66
2191 2303 1.594833 GACATGTCCCTACGCCACA 59.405 57.895 15.31 0.00 0.00 4.17
2192 2304 1.153429 GGACATGTCCCTACGCCAC 60.153 63.158 31.37 5.45 43.94 5.01
2193 2305 3.305314 GGACATGTCCCTACGCCA 58.695 61.111 31.37 0.00 43.94 5.69
2207 2319 2.282180 TTTTCAGGCCAGCGGGAC 60.282 61.111 7.23 2.70 45.66 4.46
2208 2320 2.282180 GTTTTCAGGCCAGCGGGA 60.282 61.111 7.23 0.00 35.59 5.14
2209 2321 1.535204 AATGTTTTCAGGCCAGCGGG 61.535 55.000 5.01 0.00 37.18 6.13
2210 2322 0.318120 AAATGTTTTCAGGCCAGCGG 59.682 50.000 5.01 0.00 0.00 5.52
2211 2323 2.228822 AGTAAATGTTTTCAGGCCAGCG 59.771 45.455 5.01 0.00 0.00 5.18
2212 2324 3.942130 AGTAAATGTTTTCAGGCCAGC 57.058 42.857 5.01 0.00 0.00 4.85
2213 2325 4.458989 TGCTAGTAAATGTTTTCAGGCCAG 59.541 41.667 5.01 0.00 0.00 4.85
2214 2326 4.217550 GTGCTAGTAAATGTTTTCAGGCCA 59.782 41.667 5.01 0.00 0.00 5.36
2215 2327 4.217550 TGTGCTAGTAAATGTTTTCAGGCC 59.782 41.667 0.00 0.00 0.00 5.19
2216 2328 5.371115 TGTGCTAGTAAATGTTTTCAGGC 57.629 39.130 0.00 0.00 0.00 4.85
2217 2329 5.393962 GCTGTGCTAGTAAATGTTTTCAGG 58.606 41.667 0.00 0.00 0.00 3.86
2218 2330 5.182001 AGGCTGTGCTAGTAAATGTTTTCAG 59.818 40.000 0.00 0.00 0.00 3.02
2219 2331 5.048782 CAGGCTGTGCTAGTAAATGTTTTCA 60.049 40.000 6.28 0.00 0.00 2.69
2220 2332 5.048713 ACAGGCTGTGCTAGTAAATGTTTTC 60.049 40.000 21.37 0.00 0.00 2.29
2221 2333 4.827284 ACAGGCTGTGCTAGTAAATGTTTT 59.173 37.500 21.37 0.00 0.00 2.43
2222 2334 4.398319 ACAGGCTGTGCTAGTAAATGTTT 58.602 39.130 21.37 0.00 0.00 2.83
2223 2335 4.021102 ACAGGCTGTGCTAGTAAATGTT 57.979 40.909 21.37 0.00 0.00 2.71
2224 2336 3.703001 ACAGGCTGTGCTAGTAAATGT 57.297 42.857 21.37 0.00 0.00 2.71
2225 2337 4.142600 GGAAACAGGCTGTGCTAGTAAATG 60.143 45.833 22.83 0.00 0.00 2.32
2226 2338 4.010349 GGAAACAGGCTGTGCTAGTAAAT 58.990 43.478 22.83 0.00 0.00 1.40
2227 2339 3.072476 AGGAAACAGGCTGTGCTAGTAAA 59.928 43.478 22.83 0.00 0.00 2.01
2228 2340 2.637872 AGGAAACAGGCTGTGCTAGTAA 59.362 45.455 22.83 0.00 0.00 2.24
2229 2341 2.257207 AGGAAACAGGCTGTGCTAGTA 58.743 47.619 22.83 0.00 0.00 1.82
2230 2342 1.059913 AGGAAACAGGCTGTGCTAGT 58.940 50.000 22.83 1.09 0.00 2.57
2231 2343 1.808945 CAAGGAAACAGGCTGTGCTAG 59.191 52.381 22.83 5.82 0.00 3.42
2232 2344 1.419762 TCAAGGAAACAGGCTGTGCTA 59.580 47.619 22.83 0.00 0.00 3.49
2233 2345 0.183492 TCAAGGAAACAGGCTGTGCT 59.817 50.000 22.83 11.79 0.00 4.40
2234 2346 0.595095 CTCAAGGAAACAGGCTGTGC 59.405 55.000 22.83 16.05 0.00 4.57
2235 2347 0.595095 GCTCAAGGAAACAGGCTGTG 59.405 55.000 22.83 7.60 0.00 3.66
2236 2348 0.886490 CGCTCAAGGAAACAGGCTGT 60.886 55.000 15.88 15.88 0.00 4.40
2237 2349 0.886490 ACGCTCAAGGAAACAGGCTG 60.886 55.000 14.16 14.16 0.00 4.85
2238 2350 0.179018 AACGCTCAAGGAAACAGGCT 60.179 50.000 0.00 0.00 0.00 4.58
2239 2351 0.040067 CAACGCTCAAGGAAACAGGC 60.040 55.000 0.00 0.00 0.00 4.85
2240 2352 1.264288 GACAACGCTCAAGGAAACAGG 59.736 52.381 0.00 0.00 0.00 4.00
2241 2353 1.939934 TGACAACGCTCAAGGAAACAG 59.060 47.619 0.00 0.00 0.00 3.16
2242 2354 1.939934 CTGACAACGCTCAAGGAAACA 59.060 47.619 0.00 0.00 0.00 2.83
2243 2355 1.334149 GCTGACAACGCTCAAGGAAAC 60.334 52.381 0.00 0.00 0.00 2.78
2244 2356 0.944386 GCTGACAACGCTCAAGGAAA 59.056 50.000 0.00 0.00 0.00 3.13
2245 2357 0.179059 TGCTGACAACGCTCAAGGAA 60.179 50.000 0.00 0.00 0.00 3.36
2246 2358 0.035317 ATGCTGACAACGCTCAAGGA 59.965 50.000 0.00 0.00 0.00 3.36
2247 2359 0.167470 CATGCTGACAACGCTCAAGG 59.833 55.000 0.00 0.00 0.00 3.61
2248 2360 0.870393 ACATGCTGACAACGCTCAAG 59.130 50.000 0.00 0.00 0.00 3.02
2249 2361 0.587768 CACATGCTGACAACGCTCAA 59.412 50.000 0.00 0.00 0.00 3.02
2250 2362 1.844771 GCACATGCTGACAACGCTCA 61.845 55.000 0.00 0.00 38.21 4.26
2251 2363 1.154338 GCACATGCTGACAACGCTC 60.154 57.895 0.00 0.00 38.21 5.03
2252 2364 1.239296 ATGCACATGCTGACAACGCT 61.239 50.000 5.31 0.00 42.66 5.07
2253 2365 0.387622 AATGCACATGCTGACAACGC 60.388 50.000 5.31 0.00 42.66 4.84
2254 2366 1.069091 TGAATGCACATGCTGACAACG 60.069 47.619 5.31 0.00 42.66 4.10
2266 2393 3.921119 TGTTGATGGAACTGAATGCAC 57.079 42.857 0.00 0.00 35.37 4.57
2267 2394 4.933505 TTTGTTGATGGAACTGAATGCA 57.066 36.364 0.00 0.00 35.37 3.96
2268 2395 5.291971 ACTTTTGTTGATGGAACTGAATGC 58.708 37.500 0.00 0.00 35.37 3.56
2270 2397 8.517878 CAGATACTTTTGTTGATGGAACTGAAT 58.482 33.333 0.00 0.00 35.37 2.57
2272 2399 6.430925 CCAGATACTTTTGTTGATGGAACTGA 59.569 38.462 0.00 0.00 35.37 3.41
2273 2400 6.615088 CCAGATACTTTTGTTGATGGAACTG 58.385 40.000 0.00 0.00 35.37 3.16
2274 2401 5.183904 GCCAGATACTTTTGTTGATGGAACT 59.816 40.000 0.00 0.00 35.37 3.01
2278 2405 4.380867 GGTGCCAGATACTTTTGTTGATGG 60.381 45.833 0.00 0.00 33.02 3.51
2279 2406 4.460382 AGGTGCCAGATACTTTTGTTGATG 59.540 41.667 0.00 0.00 0.00 3.07
2280 2407 4.460382 CAGGTGCCAGATACTTTTGTTGAT 59.540 41.667 0.00 0.00 0.00 2.57
2286 2413 4.574674 TCATCAGGTGCCAGATACTTTT 57.425 40.909 0.00 0.00 0.00 2.27
2287 2414 4.164796 TCATCATCAGGTGCCAGATACTTT 59.835 41.667 0.00 0.00 0.00 2.66
2288 2415 3.713248 TCATCATCAGGTGCCAGATACTT 59.287 43.478 0.00 0.00 0.00 2.24
2289 2416 3.311990 TCATCATCAGGTGCCAGATACT 58.688 45.455 0.00 0.00 0.00 2.12
2290 2417 3.758755 TCATCATCAGGTGCCAGATAC 57.241 47.619 0.00 0.00 0.00 2.24
2291 2418 3.262660 GGATCATCATCAGGTGCCAGATA 59.737 47.826 0.00 0.00 0.00 1.98
2292 2419 2.040012 GGATCATCATCAGGTGCCAGAT 59.960 50.000 0.00 0.00 0.00 2.90
2293 2420 1.419012 GGATCATCATCAGGTGCCAGA 59.581 52.381 0.00 0.00 0.00 3.86
2294 2421 1.420514 AGGATCATCATCAGGTGCCAG 59.579 52.381 0.00 0.00 0.00 4.85
2295 2422 1.142262 CAGGATCATCATCAGGTGCCA 59.858 52.381 0.00 0.00 0.00 4.92
2296 2423 1.419012 TCAGGATCATCATCAGGTGCC 59.581 52.381 0.00 0.00 0.00 5.01
2297 2424 2.924757 TCAGGATCATCATCAGGTGC 57.075 50.000 0.00 0.00 0.00 5.01
2298 2425 4.072839 CCATTCAGGATCATCATCAGGTG 58.927 47.826 0.00 0.00 41.22 4.00
2299 2426 3.978672 TCCATTCAGGATCATCATCAGGT 59.021 43.478 0.00 0.00 43.07 4.00
2300 2427 4.635699 TCCATTCAGGATCATCATCAGG 57.364 45.455 0.00 0.00 43.07 3.86
2319 2446 4.576463 CCTAGTTGTGCAAGATGGTAATCC 59.424 45.833 0.00 0.00 32.77 3.01
2320 2447 5.428253 TCCTAGTTGTGCAAGATGGTAATC 58.572 41.667 0.00 0.00 0.00 1.75
2321 2448 5.045578 ACTCCTAGTTGTGCAAGATGGTAAT 60.046 40.000 0.00 0.00 0.00 1.89
2322 2449 4.286032 ACTCCTAGTTGTGCAAGATGGTAA 59.714 41.667 0.00 0.00 0.00 2.85
2323 2450 3.838317 ACTCCTAGTTGTGCAAGATGGTA 59.162 43.478 0.00 0.00 0.00 3.25
2324 2451 2.639839 ACTCCTAGTTGTGCAAGATGGT 59.360 45.455 0.00 0.00 0.00 3.55
2325 2452 3.340814 ACTCCTAGTTGTGCAAGATGG 57.659 47.619 0.00 0.00 0.00 3.51
2326 2453 5.330455 TCTACTCCTAGTTGTGCAAGATG 57.670 43.478 0.00 0.00 0.00 2.90
2327 2454 5.658634 TGATCTACTCCTAGTTGTGCAAGAT 59.341 40.000 0.00 0.00 0.00 2.40
2328 2455 5.016831 TGATCTACTCCTAGTTGTGCAAGA 58.983 41.667 0.00 0.00 0.00 3.02
2329 2456 5.330455 TGATCTACTCCTAGTTGTGCAAG 57.670 43.478 0.00 0.00 0.00 4.01
2330 2457 5.939764 ATGATCTACTCCTAGTTGTGCAA 57.060 39.130 0.00 0.00 0.00 4.08
2331 2458 7.287696 TGATTATGATCTACTCCTAGTTGTGCA 59.712 37.037 0.00 0.00 33.28 4.57
2332 2459 7.661968 TGATTATGATCTACTCCTAGTTGTGC 58.338 38.462 0.00 0.00 33.28 4.57
2333 2460 9.853555 GATGATTATGATCTACTCCTAGTTGTG 57.146 37.037 0.00 0.00 33.28 3.33
2334 2461 9.821240 AGATGATTATGATCTACTCCTAGTTGT 57.179 33.333 0.00 0.00 33.28 3.32
2360 2487 9.801873 GTCTGGCAAATTAATTGAGCTAATAAA 57.198 29.630 19.35 3.93 41.85 1.40
2361 2488 9.189156 AGTCTGGCAAATTAATTGAGCTAATAA 57.811 29.630 19.35 5.68 41.85 1.40
2362 2489 8.752005 AGTCTGGCAAATTAATTGAGCTAATA 57.248 30.769 19.35 7.43 41.85 0.98
2363 2490 7.651027 AGTCTGGCAAATTAATTGAGCTAAT 57.349 32.000 19.35 7.63 41.85 1.73
2364 2491 7.466746 AAGTCTGGCAAATTAATTGAGCTAA 57.533 32.000 19.35 11.12 41.85 3.09
2365 2492 7.315142 CAAAGTCTGGCAAATTAATTGAGCTA 58.685 34.615 19.35 14.91 41.85 3.32
2366 2493 5.990120 AAGTCTGGCAAATTAATTGAGCT 57.010 34.783 19.35 0.00 41.85 4.09
2367 2494 5.163923 GCAAAGTCTGGCAAATTAATTGAGC 60.164 40.000 14.37 14.37 41.85 4.26
2368 2495 5.927689 TGCAAAGTCTGGCAAATTAATTGAG 59.072 36.000 0.39 0.00 41.85 3.02
2369 2496 5.851720 TGCAAAGTCTGGCAAATTAATTGA 58.148 33.333 0.39 0.00 41.85 2.57
2370 2497 6.542574 TTGCAAAGTCTGGCAAATTAATTG 57.457 33.333 0.39 0.00 46.11 2.32
2379 2506 2.356665 TTAGGTTGCAAAGTCTGGCA 57.643 45.000 0.00 0.00 38.46 4.92
2380 2507 3.726291 TTTTAGGTTGCAAAGTCTGGC 57.274 42.857 0.00 0.00 0.00 4.85
2386 2513 4.220602 AGGCCAGTATTTTAGGTTGCAAAG 59.779 41.667 5.01 0.00 0.00 2.77
2389 2516 3.088532 CAGGCCAGTATTTTAGGTTGCA 58.911 45.455 5.01 0.00 0.00 4.08
2393 2520 3.054361 CAGACCAGGCCAGTATTTTAGGT 60.054 47.826 5.01 0.00 0.00 3.08
2402 2529 1.067295 TCAAATCAGACCAGGCCAGT 58.933 50.000 5.01 0.38 0.00 4.00
2410 2537 4.096984 GGTCCACATTGATCAAATCAGACC 59.903 45.833 23.81 23.81 40.26 3.85
2414 2541 5.078949 ACAAGGTCCACATTGATCAAATCA 58.921 37.500 13.09 0.00 39.74 2.57
2416 2543 4.156556 CGACAAGGTCCACATTGATCAAAT 59.843 41.667 13.09 0.57 39.74 2.32
2417 2544 3.501828 CGACAAGGTCCACATTGATCAAA 59.498 43.478 13.09 0.00 39.74 2.69
2429 2602 1.796796 GCTGCAATCGACAAGGTCC 59.203 57.895 0.00 0.00 0.00 4.46
2432 2605 1.133253 CACGCTGCAATCGACAAGG 59.867 57.895 13.96 0.00 0.00 3.61
2433 2606 0.094216 CTCACGCTGCAATCGACAAG 59.906 55.000 13.96 5.29 0.00 3.16
2441 2614 4.641645 CCCACCCTCACGCTGCAA 62.642 66.667 0.00 0.00 0.00 4.08
2459 2632 1.747367 CCCGGCGCCAAGTTCATTA 60.747 57.895 28.98 0.00 0.00 1.90
2541 2714 2.202756 GACCAGAACGCCGGCTAG 60.203 66.667 26.68 12.89 0.00 3.42
2723 4355 9.647918 TGTCCTAAAGATGATTGTATCTAGACT 57.352 33.333 0.00 0.00 36.42 3.24
2732 4364 9.178758 GGAAATACTTGTCCTAAAGATGATTGT 57.821 33.333 0.00 0.00 0.00 2.71
2733 4365 8.338259 CGGAAATACTTGTCCTAAAGATGATTG 58.662 37.037 0.00 0.00 0.00 2.67
2734 4366 7.499232 CCGGAAATACTTGTCCTAAAGATGATT 59.501 37.037 0.00 0.00 0.00 2.57
2735 4367 6.992715 CCGGAAATACTTGTCCTAAAGATGAT 59.007 38.462 0.00 0.00 0.00 2.45
2736 4368 6.155565 TCCGGAAATACTTGTCCTAAAGATGA 59.844 38.462 0.00 0.00 0.00 2.92
2738 4370 6.070424 TGTCCGGAAATACTTGTCCTAAAGAT 60.070 38.462 5.23 0.00 0.00 2.40
2741 4373 5.486735 TGTCCGGAAATACTTGTCCTAAA 57.513 39.130 5.23 0.00 0.00 1.85
2743 4375 5.484715 CTTTGTCCGGAAATACTTGTCCTA 58.515 41.667 5.23 0.00 0.00 2.94
2744 4376 4.324267 CTTTGTCCGGAAATACTTGTCCT 58.676 43.478 5.23 0.00 0.00 3.85
2745 4377 3.439129 CCTTTGTCCGGAAATACTTGTCC 59.561 47.826 5.23 0.00 0.00 4.02
2746 4378 3.439129 CCCTTTGTCCGGAAATACTTGTC 59.561 47.826 5.23 0.00 0.00 3.18
2747 4379 3.073356 TCCCTTTGTCCGGAAATACTTGT 59.927 43.478 5.23 0.00 0.00 3.16
2748 4380 3.681593 TCCCTTTGTCCGGAAATACTTG 58.318 45.455 5.23 0.00 0.00 3.16
2749 4381 3.329814 ACTCCCTTTGTCCGGAAATACTT 59.670 43.478 5.23 0.00 0.00 2.24
2750 4382 2.910977 ACTCCCTTTGTCCGGAAATACT 59.089 45.455 5.23 0.00 0.00 2.12
2751 4383 3.345508 ACTCCCTTTGTCCGGAAATAC 57.654 47.619 5.23 0.00 0.00 1.89
2752 4384 3.119029 CGTACTCCCTTTGTCCGGAAATA 60.119 47.826 5.23 0.00 0.00 1.40
2753 4385 2.354403 CGTACTCCCTTTGTCCGGAAAT 60.354 50.000 5.23 0.00 0.00 2.17
2754 4386 1.001181 CGTACTCCCTTTGTCCGGAAA 59.999 52.381 5.23 0.00 0.00 3.13
2755 4387 0.604578 CGTACTCCCTTTGTCCGGAA 59.395 55.000 5.23 0.00 0.00 4.30
2756 4388 0.540365 ACGTACTCCCTTTGTCCGGA 60.540 55.000 0.00 0.00 0.00 5.14
2757 4389 0.389426 CACGTACTCCCTTTGTCCGG 60.389 60.000 0.00 0.00 0.00 5.14
2758 4390 0.316204 ACACGTACTCCCTTTGTCCG 59.684 55.000 0.00 0.00 0.00 4.79
2759 4391 2.538512 AACACGTACTCCCTTTGTCC 57.461 50.000 0.00 0.00 0.00 4.02
2760 4392 3.992427 CCTTAACACGTACTCCCTTTGTC 59.008 47.826 0.00 0.00 0.00 3.18
2761 4393 3.642848 TCCTTAACACGTACTCCCTTTGT 59.357 43.478 0.00 0.00 0.00 2.83
2762 4394 4.261578 TCCTTAACACGTACTCCCTTTG 57.738 45.455 0.00 0.00 0.00 2.77
2763 4395 4.961438 TTCCTTAACACGTACTCCCTTT 57.039 40.909 0.00 0.00 0.00 3.11
2764 4396 5.012354 TGAATTCCTTAACACGTACTCCCTT 59.988 40.000 2.27 0.00 0.00 3.95
2765 4397 4.529377 TGAATTCCTTAACACGTACTCCCT 59.471 41.667 2.27 0.00 0.00 4.20
2766 4398 4.824289 TGAATTCCTTAACACGTACTCCC 58.176 43.478 2.27 0.00 0.00 4.30
2767 4399 5.717119 TCTGAATTCCTTAACACGTACTCC 58.283 41.667 2.27 0.00 0.00 3.85
2768 4400 6.618811 TCTCTGAATTCCTTAACACGTACTC 58.381 40.000 2.27 0.00 0.00 2.59
2769 4401 6.585695 TCTCTGAATTCCTTAACACGTACT 57.414 37.500 2.27 0.00 0.00 2.73
2770 4402 7.033791 TGATCTCTGAATTCCTTAACACGTAC 58.966 38.462 2.27 0.00 0.00 3.67
2771 4403 7.165460 TGATCTCTGAATTCCTTAACACGTA 57.835 36.000 2.27 0.00 0.00 3.57
2772 4404 6.037786 TGATCTCTGAATTCCTTAACACGT 57.962 37.500 2.27 0.00 0.00 4.49
2773 4405 6.968131 TTGATCTCTGAATTCCTTAACACG 57.032 37.500 2.27 0.00 0.00 4.49
2774 4406 8.787852 ACTTTTGATCTCTGAATTCCTTAACAC 58.212 33.333 2.27 0.00 0.00 3.32
2775 4407 8.924511 ACTTTTGATCTCTGAATTCCTTAACA 57.075 30.769 2.27 0.00 0.00 2.41
2776 4408 9.225436 AGACTTTTGATCTCTGAATTCCTTAAC 57.775 33.333 2.27 0.00 0.00 2.01
2777 4409 9.799106 AAGACTTTTGATCTCTGAATTCCTTAA 57.201 29.630 2.27 0.00 0.00 1.85
2778 4410 9.224267 CAAGACTTTTGATCTCTGAATTCCTTA 57.776 33.333 2.27 0.00 0.00 2.69
2779 4411 7.941238 TCAAGACTTTTGATCTCTGAATTCCTT 59.059 33.333 2.27 0.00 0.00 3.36
2780 4412 7.390162 GTCAAGACTTTTGATCTCTGAATTCCT 59.610 37.037 2.27 0.00 0.00 3.36
2788 4420 3.325135 ACCGGTCAAGACTTTTGATCTCT 59.675 43.478 0.00 0.00 0.00 3.10
2789 4421 3.433615 CACCGGTCAAGACTTTTGATCTC 59.566 47.826 2.59 0.00 0.00 2.75
2815 4447 3.684788 CACCTTCATCGGGTCAGTAAAAG 59.315 47.826 0.00 0.00 34.44 2.27
2820 4452 1.056660 AACACCTTCATCGGGTCAGT 58.943 50.000 0.00 0.00 34.44 3.41
2828 4461 1.336240 GCCAACAGCAACACCTTCATC 60.336 52.381 0.00 0.00 42.97 2.92
2961 4606 3.448686 TGAAATCAGCGCTACTAGCTTC 58.551 45.455 10.99 8.15 44.06 3.86
2986 4631 7.523293 TTCTGCCATCTTTAGTGAATCAAAA 57.477 32.000 0.00 0.00 0.00 2.44
2987 4632 7.394077 TGATTCTGCCATCTTTAGTGAATCAAA 59.606 33.333 11.48 0.00 42.58 2.69
2997 4642 7.504574 ACATCAATGATGATTCTGCCATCTTTA 59.495 33.333 27.86 0.00 43.89 1.85
3075 4725 6.062749 AGCTCTATCATCATTGCAGTTCATT 58.937 36.000 0.00 0.00 0.00 2.57
3086 4736 3.751518 TGCATGCAAGCTCTATCATCAT 58.248 40.909 20.30 0.00 34.99 2.45
3098 4748 0.174845 CCACAATCCCTGCATGCAAG 59.825 55.000 22.88 16.10 0.00 4.01
3175 4831 3.195825 ACCTCCTTATTCCAGTCAGTTCG 59.804 47.826 0.00 0.00 0.00 3.95
3197 4853 5.525484 TCAGGATAAGGTTTGCTCCTAGTA 58.475 41.667 0.00 0.00 35.95 1.82
3198 4854 4.362677 TCAGGATAAGGTTTGCTCCTAGT 58.637 43.478 0.00 0.00 35.95 2.57
3199 4855 5.559148 ATCAGGATAAGGTTTGCTCCTAG 57.441 43.478 0.00 0.00 35.95 3.02
3296 4953 1.335324 GCACATGATTTAGATGCGGCC 60.335 52.381 0.00 0.00 0.00 6.13
3321 4978 5.396362 CGAAATGATTGCGCTAAAATAGTGG 59.604 40.000 9.73 0.00 36.81 4.00
3324 4981 5.471608 GCGAAATGATTGCGCTAAAATAG 57.528 39.130 22.51 0.00 46.53 1.73
3434 5091 0.331616 CCGGGGTCATCCTCCTTTTT 59.668 55.000 0.00 0.00 35.33 1.94
3532 5190 0.037139 TGCTTAGACGGCGGCTTTAA 60.037 50.000 25.39 9.67 0.00 1.52
3591 5249 5.523916 GTCTGCGATGTCTGTTTGGTATTAT 59.476 40.000 0.00 0.00 0.00 1.28
3614 5272 6.042781 TGTCAGGTCTTAGATGTTAGGTTTGT 59.957 38.462 0.00 0.00 0.00 2.83
3638 5297 2.111878 GGCGTCCTGGATGGGATG 59.888 66.667 17.29 0.00 43.30 3.51
3663 5322 2.901042 GGACCGGTGAGACCCATC 59.099 66.667 14.63 0.00 33.75 3.51
3736 5395 1.816835 AGCAAGGTTGATGCATCAGTG 59.183 47.619 27.25 22.62 46.22 3.66
3841 5500 2.940971 GCATGGCACTGAGGTGTATCAA 60.941 50.000 0.00 0.00 44.65 2.57
3963 5622 2.430465 GTGGTGATGTCAAGTCATGCT 58.570 47.619 0.00 0.00 0.00 3.79
5214 6882 8.593945 AACTGAGATAATGCCATTTCCTAAAA 57.406 30.769 0.00 0.00 0.00 1.52
5215 6883 8.593945 AAACTGAGATAATGCCATTTCCTAAA 57.406 30.769 0.00 0.00 0.00 1.85
5216 6884 8.593945 AAAACTGAGATAATGCCATTTCCTAA 57.406 30.769 0.00 0.00 0.00 2.69
5217 6885 8.593945 AAAAACTGAGATAATGCCATTTCCTA 57.406 30.769 0.00 0.00 0.00 2.94
5218 6886 7.486407 AAAAACTGAGATAATGCCATTTCCT 57.514 32.000 0.00 0.00 0.00 3.36
5240 6908 6.325919 ACGATGCTCAACATTTCCTAAAAA 57.674 33.333 0.00 0.00 39.84 1.94
5241 6909 5.106317 GGACGATGCTCAACATTTCCTAAAA 60.106 40.000 0.00 0.00 39.84 1.52
5242 6910 4.394920 GGACGATGCTCAACATTTCCTAAA 59.605 41.667 0.00 0.00 39.84 1.85
5331 6999 6.576551 GTTCAGAATAGAACGTGAATCCTC 57.423 41.667 0.00 0.00 38.58 3.71
5341 7009 4.356289 GCGAGGAGAGTTCAGAATAGAAC 58.644 47.826 0.00 0.00 46.35 3.01
5343 7011 2.952978 GGCGAGGAGAGTTCAGAATAGA 59.047 50.000 0.00 0.00 0.00 1.98
5362 7030 2.037381 CCCCCGAGAGACTATTTTAGGC 59.963 54.545 0.00 0.00 0.00 3.93
5399 8368 4.324267 CTGGTTTACTCCATTCCGTTCTT 58.676 43.478 0.00 0.00 36.84 2.52
5411 8380 0.404426 ACAAGGCCCCTGGTTTACTC 59.596 55.000 0.00 0.00 0.00 2.59
5432 8401 7.065324 CACCGGATTACTTTGCTCTTTATTACA 59.935 37.037 9.46 0.00 0.00 2.41
5433 8402 7.407337 CACCGGATTACTTTGCTCTTTATTAC 58.593 38.462 9.46 0.00 0.00 1.89
5493 10235 2.699846 AGGCCAATTTGCTGAAGAACAA 59.300 40.909 5.01 0.00 0.00 2.83
5611 10354 0.813210 GATCCTTCCTGGCTTCGCAG 60.813 60.000 0.00 0.00 35.26 5.18
5728 10474 4.383118 CCGGATCTGACTGTTATTCCAAGT 60.383 45.833 2.08 0.00 0.00 3.16
5761 10507 0.602638 CAACGTGGCAGCCTGAACTA 60.603 55.000 14.15 0.00 0.00 2.24
5809 10559 8.028938 CGTAATCAAGTTCATGATTTTTCCCTT 58.971 33.333 7.73 0.00 45.39 3.95
5810 10560 7.176690 ACGTAATCAAGTTCATGATTTTTCCCT 59.823 33.333 7.73 0.00 45.39 4.20
5811 10561 7.312899 ACGTAATCAAGTTCATGATTTTTCCC 58.687 34.615 7.73 0.00 45.39 3.97
5847 10616 0.321210 TGATTGCGCTTCCTTTCCGA 60.321 50.000 9.73 0.00 0.00 4.55
5850 10619 1.200948 AGCTTGATTGCGCTTCCTTTC 59.799 47.619 9.73 0.00 38.13 2.62
5866 10635 8.478844 ATCTTTTTGATAAATTGCGTGCAGCTT 61.479 33.333 9.12 0.00 39.20 3.74
5883 10652 9.693739 TGTATAGGGAATTAAGCATCTTTTTGA 57.306 29.630 0.00 0.00 0.00 2.69
6069 10847 2.463592 TGCATCGCTTGAAGCAGAG 58.536 52.632 18.22 6.68 41.05 3.35
6073 10851 0.029035 CCAGATGCATCGCTTGAAGC 59.971 55.000 20.67 7.20 36.87 3.86
6074 10852 1.063616 CACCAGATGCATCGCTTGAAG 59.936 52.381 20.67 8.24 0.00 3.02
6075 10853 1.089112 CACCAGATGCATCGCTTGAA 58.911 50.000 20.67 0.00 0.00 2.69
6076 10854 2.771435 CACCAGATGCATCGCTTGA 58.229 52.632 20.67 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.