Multiple sequence alignment - TraesCS2D01G227900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G227900 chr2D 100.000 5842 0 0 1 5842 196453577 196459418 0.000000e+00 10789.0
1 TraesCS2D01G227900 chr2A 94.564 2042 62 15 3459 5474 212645335 212647353 0.000000e+00 3110.0
2 TraesCS2D01G227900 chr2A 96.749 1538 39 4 1523 3055 212643233 212644764 0.000000e+00 2553.0
3 TraesCS2D01G227900 chr2A 97.262 694 17 1 797 1490 212642545 212643236 0.000000e+00 1175.0
4 TraesCS2D01G227900 chr2A 81.320 621 67 22 17 619 212641899 212642488 5.330000e-125 459.0
5 TraesCS2D01G227900 chr2A 94.118 289 17 0 3172 3460 212645016 212645304 1.930000e-119 440.0
6 TraesCS2D01G227900 chr2A 81.967 244 26 6 5608 5842 212647388 212647622 2.150000e-44 191.0
7 TraesCS2D01G227900 chr2A 87.218 133 9 6 607 739 212642420 212642544 1.700000e-30 145.0
8 TraesCS2D01G227900 chr2A 100.000 28 0 0 1856 1883 733622737 733622764 1.100000e-02 52.8
9 TraesCS2D01G227900 chr2B 95.953 1878 42 7 3459 5316 254012246 254014109 0.000000e+00 3016.0
10 TraesCS2D01G227900 chr2B 96.734 1592 39 8 1874 3460 254010632 254012215 0.000000e+00 2639.0
11 TraesCS2D01G227900 chr2B 96.887 1060 23 5 817 1875 254009424 254010474 0.000000e+00 1766.0
12 TraesCS2D01G227900 chr2B 89.720 214 22 0 17 230 253961945 253962158 2.070000e-69 274.0
13 TraesCS2D01G227900 chr2B 85.000 140 8 6 605 744 254009284 254009410 4.750000e-26 130.0
14 TraesCS2D01G227900 chr2B 94.286 35 2 0 5597 5631 85327437 85327403 3.000000e-03 54.7
15 TraesCS2D01G227900 chr4B 83.482 448 61 11 2171 2609 343917298 343916855 7.050000e-109 405.0
16 TraesCS2D01G227900 chr3B 86.076 237 29 4 223 457 106025367 106025133 9.720000e-63 252.0
17 TraesCS2D01G227900 chr3B 81.496 254 42 4 225 474 738756643 738756391 2.760000e-48 204.0
18 TraesCS2D01G227900 chr3B 89.583 48 5 0 5597 5644 807053681 807053728 1.760000e-05 62.1
19 TraesCS2D01G227900 chr7D 83.817 241 33 5 222 457 448341661 448341900 2.120000e-54 224.0
20 TraesCS2D01G227900 chr7D 82.072 251 37 6 228 474 600879067 600879313 2.130000e-49 207.0
21 TraesCS2D01G227900 chr4D 82.707 266 30 13 230 485 54280732 54280991 7.620000e-54 222.0
22 TraesCS2D01G227900 chr4D 82.090 268 38 8 225 485 49877071 49876807 2.740000e-53 220.0
23 TraesCS2D01G227900 chr7B 82.677 254 38 4 225 473 74693860 74693608 2.740000e-53 220.0
24 TraesCS2D01G227900 chr7B 84.821 224 29 5 237 457 653377292 653377071 2.740000e-53 220.0
25 TraesCS2D01G227900 chr7B 76.395 233 42 9 2292 2519 356699715 356699939 4.780000e-21 113.0
26 TraesCS2D01G227900 chr3A 82.996 247 34 7 245 485 380924457 380924213 3.550000e-52 217.0
27 TraesCS2D01G227900 chr6D 76.168 214 43 6 2310 2519 47257715 47257924 8.010000e-19 106.0
28 TraesCS2D01G227900 chr6B 76.168 214 43 6 2310 2519 124479467 124479258 8.010000e-19 106.0
29 TraesCS2D01G227900 chr7A 75.536 233 44 9 2292 2519 387173292 387173516 1.040000e-17 102.0
30 TraesCS2D01G227900 chr6A 75.701 214 44 6 2310 2519 68514829 68514620 3.730000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G227900 chr2D 196453577 196459418 5841 False 10789.000000 10789 100.000000 1 5842 1 chr2D.!!$F1 5841
1 TraesCS2D01G227900 chr2A 212641899 212647622 5723 False 1153.285714 3110 90.456857 17 5842 7 chr2A.!!$F2 5825
2 TraesCS2D01G227900 chr2B 254009284 254014109 4825 False 1887.750000 3016 93.643500 605 5316 4 chr2B.!!$F2 4711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 261 0.097674 CTTTTCTTCATCAGCGGCGG 59.902 55.0 9.78 0.0 0.00 6.13 F
310 312 0.167470 CTTAGCACGACGACTTCCGA 59.833 55.0 0.00 0.0 41.76 4.55 F
911 927 0.183731 CATCTAAACCCTGCCCCTCC 59.816 60.0 0.00 0.0 0.00 4.30 F
940 956 2.239681 TCTCTCTCCCTCCAAGGTTC 57.760 55.0 0.00 0.0 31.93 3.62 F
2669 2847 0.663153 GCTGTTTCGTCACCTGCTTT 59.337 50.0 0.00 0.0 0.00 3.51 F
3802 4150 0.609131 TTGGGTCTGCCAGCTTTAGC 60.609 55.0 0.00 0.0 42.49 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1308 1324 0.543174 ACCTGATATCCTCGCCTCCC 60.543 60.000 0.00 0.00 0.00 4.30 R
1573 1589 3.550437 AGCAAACACTGAGTCACTTCT 57.450 42.857 0.00 0.00 0.00 2.85 R
1772 1788 4.178545 ACAGCACATTTATCAAGTTGCC 57.821 40.909 0.00 0.00 0.00 4.52 R
2764 2942 4.202398 ACTCTCATTGAGGAAGCAAACAGA 60.202 41.667 13.59 0.00 46.72 3.41 R
4458 4807 0.182537 TGGGTGCACCATAGTATGCC 59.817 55.000 35.78 16.31 46.80 4.40 R
5605 5983 0.248054 CGTTGCAACGCACAAACTCT 60.248 50.000 35.89 0.00 46.06 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.441274 CATCAGTTGATTGTTATGGCCATAC 58.559 40.000 25.39 19.06 31.21 2.39
48 49 6.204688 AGTTGATTGTTATGGCCATACATACG 59.795 38.462 25.39 0.00 33.33 3.06
54 55 5.880887 TGTTATGGCCATACATACGAACAAA 59.119 36.000 25.39 4.97 33.33 2.83
77 78 9.846248 CAAAAATGAAAATCTTCTCGTTAGGAT 57.154 29.630 0.00 0.00 32.33 3.24
87 88 1.153168 CGTTAGGATGGGTGGCCAG 60.153 63.158 5.11 0.00 0.00 4.85
89 90 1.619363 TTAGGATGGGTGGCCAGCT 60.619 57.895 32.43 15.87 0.00 4.24
142 143 3.620488 TGAGTTGTGTTTCTTTGCCTCT 58.380 40.909 0.00 0.00 0.00 3.69
143 144 3.627577 TGAGTTGTGTTTCTTTGCCTCTC 59.372 43.478 0.00 0.00 0.00 3.20
144 145 2.952310 AGTTGTGTTTCTTTGCCTCTCC 59.048 45.455 0.00 0.00 0.00 3.71
145 146 2.952310 GTTGTGTTTCTTTGCCTCTCCT 59.048 45.455 0.00 0.00 0.00 3.69
146 147 3.297134 TGTGTTTCTTTGCCTCTCCTT 57.703 42.857 0.00 0.00 0.00 3.36
158 159 4.282496 TGCCTCTCCTTTCCTCTACTTAG 58.718 47.826 0.00 0.00 0.00 2.18
165 166 4.530946 TCCTTTCCTCTACTTAGTTGGGTG 59.469 45.833 0.00 0.00 0.00 4.61
170 171 3.767673 CCTCTACTTAGTTGGGTGCTACA 59.232 47.826 0.00 0.00 0.00 2.74
194 195 2.758089 GCTGGTGCAAGAGATGGCG 61.758 63.158 0.00 0.00 39.41 5.69
207 208 3.008813 AGAGATGGCGAATCCTATGCAAT 59.991 43.478 0.00 0.00 35.72 3.56
208 209 3.755378 GAGATGGCGAATCCTATGCAATT 59.245 43.478 0.00 0.00 35.72 2.32
221 222 0.178967 TGCAATTGGGAGGTGCTCAA 60.179 50.000 7.72 0.00 42.22 3.02
228 229 2.726821 TGGGAGGTGCTCAATTGATTC 58.273 47.619 8.96 4.83 31.08 2.52
235 236 4.946157 AGGTGCTCAATTGATTCTTTCGAT 59.054 37.500 8.96 0.00 0.00 3.59
236 237 5.065731 AGGTGCTCAATTGATTCTTTCGATC 59.934 40.000 8.96 0.00 0.00 3.69
237 238 5.065731 GGTGCTCAATTGATTCTTTCGATCT 59.934 40.000 8.96 0.00 0.00 2.75
238 239 6.258727 GGTGCTCAATTGATTCTTTCGATCTA 59.741 38.462 8.96 0.00 0.00 1.98
239 240 7.122550 GTGCTCAATTGATTCTTTCGATCTAC 58.877 38.462 8.96 0.00 0.00 2.59
240 241 6.019559 TGCTCAATTGATTCTTTCGATCTACG 60.020 38.462 8.96 0.00 44.09 3.51
243 244 6.535150 TCAATTGATTCTTTCGATCTACGCTT 59.465 34.615 3.38 0.00 42.26 4.68
244 245 6.910536 ATTGATTCTTTCGATCTACGCTTT 57.089 33.333 0.00 0.00 42.26 3.51
245 246 6.721571 TTGATTCTTTCGATCTACGCTTTT 57.278 33.333 0.00 0.00 42.26 2.27
246 247 6.332504 TGATTCTTTCGATCTACGCTTTTC 57.667 37.500 0.00 0.00 42.26 2.29
247 248 6.100004 TGATTCTTTCGATCTACGCTTTTCT 58.900 36.000 0.00 0.00 42.26 2.52
248 249 6.590292 TGATTCTTTCGATCTACGCTTTTCTT 59.410 34.615 0.00 0.00 42.26 2.52
249 250 6.390987 TTCTTTCGATCTACGCTTTTCTTC 57.609 37.500 0.00 0.00 42.26 2.87
250 251 5.466819 TCTTTCGATCTACGCTTTTCTTCA 58.533 37.500 0.00 0.00 42.26 3.02
251 252 6.100004 TCTTTCGATCTACGCTTTTCTTCAT 58.900 36.000 0.00 0.00 42.26 2.57
252 253 5.950965 TTCGATCTACGCTTTTCTTCATC 57.049 39.130 0.00 0.00 42.26 2.92
253 254 4.993905 TCGATCTACGCTTTTCTTCATCA 58.006 39.130 0.00 0.00 42.26 3.07
254 255 5.037385 TCGATCTACGCTTTTCTTCATCAG 58.963 41.667 0.00 0.00 42.26 2.90
255 256 4.317698 CGATCTACGCTTTTCTTCATCAGC 60.318 45.833 0.00 0.00 34.51 4.26
258 259 3.319245 GCTTTTCTTCATCAGCGGC 57.681 52.632 0.00 0.00 0.00 6.53
259 260 0.522076 GCTTTTCTTCATCAGCGGCG 60.522 55.000 0.51 0.51 0.00 6.46
260 261 0.097674 CTTTTCTTCATCAGCGGCGG 59.902 55.000 9.78 0.00 0.00 6.13
261 262 0.605319 TTTTCTTCATCAGCGGCGGT 60.605 50.000 5.44 5.44 0.00 5.68
262 263 0.605319 TTTCTTCATCAGCGGCGGTT 60.605 50.000 9.73 0.00 0.00 4.44
263 264 1.298157 TTCTTCATCAGCGGCGGTTG 61.298 55.000 9.73 6.66 0.00 3.77
264 265 3.386867 CTTCATCAGCGGCGGTTGC 62.387 63.158 9.73 0.00 41.71 4.17
265 266 3.899981 TTCATCAGCGGCGGTTGCT 62.900 57.895 9.73 0.00 45.31 3.91
266 267 3.434319 CATCAGCGGCGGTTGCTT 61.434 61.111 9.73 0.00 41.72 3.91
267 268 2.672996 ATCAGCGGCGGTTGCTTT 60.673 55.556 9.73 0.00 41.72 3.51
277 278 0.597377 CGGTTGCTTTTTCTGGTGCC 60.597 55.000 0.00 0.00 0.00 5.01
281 282 0.396974 TGCTTTTTCTGGTGCCCTGT 60.397 50.000 0.00 0.00 0.00 4.00
282 283 0.315251 GCTTTTTCTGGTGCCCTGTC 59.685 55.000 0.00 0.00 0.00 3.51
283 284 0.961753 CTTTTTCTGGTGCCCTGTCC 59.038 55.000 0.00 0.00 0.00 4.02
284 285 0.555769 TTTTTCTGGTGCCCTGTCCT 59.444 50.000 0.00 0.00 0.00 3.85
285 286 1.440618 TTTTCTGGTGCCCTGTCCTA 58.559 50.000 0.00 0.00 0.00 2.94
286 287 1.668826 TTTCTGGTGCCCTGTCCTAT 58.331 50.000 0.00 0.00 0.00 2.57
287 288 0.911769 TTCTGGTGCCCTGTCCTATG 59.088 55.000 0.00 0.00 0.00 2.23
295 297 1.059913 CCCTGTCCTATGGGCCTTAG 58.940 60.000 17.37 17.37 36.61 2.18
298 300 0.837272 TGTCCTATGGGCCTTAGCAC 59.163 55.000 18.58 15.52 45.43 4.40
308 310 1.077089 GCCTTAGCACGACGACTTCC 61.077 60.000 0.00 0.00 39.53 3.46
309 311 0.797249 CCTTAGCACGACGACTTCCG 60.797 60.000 0.00 0.00 45.44 4.30
310 312 0.167470 CTTAGCACGACGACTTCCGA 59.833 55.000 0.00 0.00 41.76 4.55
311 313 0.592637 TTAGCACGACGACTTCCGAA 59.407 50.000 0.00 0.00 41.76 4.30
314 316 1.606350 GCACGACGACTTCCGAACTG 61.606 60.000 0.00 0.00 41.76 3.16
323 325 3.434641 CGACTTCCGAACTGTCTACTACA 59.565 47.826 0.00 0.00 41.76 2.74
335 337 6.171213 ACTGTCTACTACAATAAGGTTTGCC 58.829 40.000 0.00 0.00 37.74 4.52
338 340 3.706600 ACTACAATAAGGTTTGCCCGA 57.293 42.857 0.00 0.00 38.74 5.14
341 343 2.433436 ACAATAAGGTTTGCCCGACTC 58.567 47.619 0.00 0.00 38.74 3.36
350 352 2.029666 GCCCGACTCCGATGATGG 59.970 66.667 0.00 0.00 38.22 3.51
362 364 1.001746 CGATGATGGAGGGGTGATGAG 59.998 57.143 0.00 0.00 0.00 2.90
363 365 0.769873 ATGATGGAGGGGTGATGAGC 59.230 55.000 0.00 0.00 0.00 4.26
364 366 1.070445 GATGGAGGGGTGATGAGCG 59.930 63.158 0.00 0.00 0.00 5.03
388 390 1.795170 GCGCCTTCAACTTGCTCCAA 61.795 55.000 0.00 0.00 0.00 3.53
391 393 1.670967 GCCTTCAACTTGCTCCAATGC 60.671 52.381 0.00 0.00 0.00 3.56
394 396 3.507233 CCTTCAACTTGCTCCAATGCTTA 59.493 43.478 0.00 0.00 0.00 3.09
398 400 4.336433 TCAACTTGCTCCAATGCTTATAGC 59.664 41.667 0.00 0.00 42.82 2.97
421 423 2.490903 GTCGCTAGGTGGTCTAAGAACA 59.509 50.000 0.00 0.00 0.00 3.18
432 434 7.347222 AGGTGGTCTAAGAACATGGATGTAATA 59.653 37.037 0.00 0.00 40.80 0.98
434 436 9.561069 GTGGTCTAAGAACATGGATGTAATATT 57.439 33.333 0.00 0.00 40.80 1.28
469 474 9.599322 GTGTTCTTTATACTTTGACAGTTGATG 57.401 33.333 0.00 0.00 36.88 3.07
485 490 9.941664 GACAGTTGATGAATATAATGGAAGTTG 57.058 33.333 0.00 0.00 0.00 3.16
529 545 2.580966 TTACACCAACCCGCAAAAAC 57.419 45.000 0.00 0.00 0.00 2.43
534 550 1.294857 CCAACCCGCAAAAACCAAAG 58.705 50.000 0.00 0.00 0.00 2.77
547 563 6.632434 GCAAAAACCAAAGAAACATGCATTAC 59.368 34.615 0.00 0.00 0.00 1.89
548 564 7.678218 GCAAAAACCAAAGAAACATGCATTACA 60.678 33.333 0.00 0.00 0.00 2.41
549 565 6.843069 AAACCAAAGAAACATGCATTACAC 57.157 33.333 0.00 0.00 0.00 2.90
552 568 5.163364 ACCAAAGAAACATGCATTACACCAA 60.163 36.000 0.00 0.00 0.00 3.67
553 569 5.933463 CCAAAGAAACATGCATTACACCAAT 59.067 36.000 0.00 0.00 0.00 3.16
554 570 6.091169 CCAAAGAAACATGCATTACACCAATC 59.909 38.462 0.00 0.00 0.00 2.67
555 571 5.981088 AGAAACATGCATTACACCAATCA 57.019 34.783 0.00 0.00 0.00 2.57
556 572 6.343716 AGAAACATGCATTACACCAATCAA 57.656 33.333 0.00 0.00 0.00 2.57
557 573 6.757237 AGAAACATGCATTACACCAATCAAA 58.243 32.000 0.00 0.00 0.00 2.69
558 574 6.646240 AGAAACATGCATTACACCAATCAAAC 59.354 34.615 0.00 0.00 0.00 2.93
559 575 5.726980 ACATGCATTACACCAATCAAACT 57.273 34.783 0.00 0.00 0.00 2.66
560 576 5.472148 ACATGCATTACACCAATCAAACTG 58.528 37.500 0.00 0.00 0.00 3.16
561 577 5.010922 ACATGCATTACACCAATCAAACTGT 59.989 36.000 0.00 0.00 0.00 3.55
562 578 5.528043 TGCATTACACCAATCAAACTGTT 57.472 34.783 0.00 0.00 0.00 3.16
563 579 5.911752 TGCATTACACCAATCAAACTGTTT 58.088 33.333 0.00 0.00 0.00 2.83
564 580 6.344500 TGCATTACACCAATCAAACTGTTTT 58.656 32.000 2.41 0.00 0.00 2.43
565 581 6.820656 TGCATTACACCAATCAAACTGTTTTT 59.179 30.769 2.41 0.00 0.00 1.94
621 637 3.060339 GCAAAACCAATCGAACTGCTTTG 60.060 43.478 13.59 13.59 0.00 2.77
645 661 5.606348 TTAGGCAAAACCAATCAAACTGT 57.394 34.783 0.00 0.00 43.14 3.55
647 663 4.842574 AGGCAAAACCAATCAAACTGTTT 58.157 34.783 0.00 0.00 43.14 2.83
670 686 7.969536 TTTTTGTTTGTTTGAGAAATCACCA 57.030 28.000 0.00 0.00 0.00 4.17
671 687 7.969536 TTTTGTTTGTTTGAGAAATCACCAA 57.030 28.000 0.00 0.00 0.00 3.67
672 688 6.959671 TTGTTTGTTTGAGAAATCACCAAC 57.040 33.333 0.00 0.00 0.00 3.77
673 689 5.415221 TGTTTGTTTGAGAAATCACCAACC 58.585 37.500 0.00 0.00 0.00 3.77
674 690 5.047021 TGTTTGTTTGAGAAATCACCAACCA 60.047 36.000 0.00 0.00 0.00 3.67
708 724 2.587194 CTCGGATTCGCAGCCAGG 60.587 66.667 0.00 0.00 36.13 4.45
744 760 6.840780 AAACGGAAGAGAATCCAAATCATT 57.159 33.333 0.00 0.00 39.61 2.57
745 761 6.840780 AACGGAAGAGAATCCAAATCATTT 57.159 33.333 0.00 0.00 39.61 2.32
747 763 7.232118 ACGGAAGAGAATCCAAATCATTTTT 57.768 32.000 0.00 0.00 39.61 1.94
768 784 4.853924 TTTTTGAGGCACAAGAGAATCC 57.146 40.909 0.00 0.00 39.77 3.01
769 785 3.507162 TTTGAGGCACAAGAGAATCCA 57.493 42.857 0.00 0.00 39.77 3.41
770 786 3.507162 TTGAGGCACAAGAGAATCCAA 57.493 42.857 0.00 0.00 33.66 3.53
771 787 3.507162 TGAGGCACAAGAGAATCCAAA 57.493 42.857 0.00 0.00 33.66 3.28
772 788 4.038271 TGAGGCACAAGAGAATCCAAAT 57.962 40.909 0.00 0.00 33.66 2.32
773 789 4.012374 TGAGGCACAAGAGAATCCAAATC 58.988 43.478 0.00 0.00 33.66 2.17
774 790 4.012374 GAGGCACAAGAGAATCCAAATCA 58.988 43.478 0.00 0.00 33.66 2.57
775 791 4.607239 AGGCACAAGAGAATCCAAATCAT 58.393 39.130 0.00 0.00 33.66 2.45
776 792 4.401519 AGGCACAAGAGAATCCAAATCATG 59.598 41.667 0.00 0.00 33.66 3.07
777 793 4.110482 GCACAAGAGAATCCAAATCATGC 58.890 43.478 0.00 0.00 33.66 4.06
778 794 4.142227 GCACAAGAGAATCCAAATCATGCT 60.142 41.667 0.00 0.00 33.66 3.79
779 795 5.066893 GCACAAGAGAATCCAAATCATGCTA 59.933 40.000 0.00 0.00 33.66 3.49
780 796 6.238953 GCACAAGAGAATCCAAATCATGCTAT 60.239 38.462 0.00 0.00 33.66 2.97
781 797 7.683704 GCACAAGAGAATCCAAATCATGCTATT 60.684 37.037 0.00 0.00 33.66 1.73
782 798 8.843262 CACAAGAGAATCCAAATCATGCTATTA 58.157 33.333 0.00 0.00 33.66 0.98
783 799 9.064706 ACAAGAGAATCCAAATCATGCTATTAG 57.935 33.333 0.00 0.00 33.66 1.73
784 800 9.064706 CAAGAGAATCCAAATCATGCTATTAGT 57.935 33.333 0.00 0.00 33.66 2.24
786 802 9.717942 AGAGAATCCAAATCATGCTATTAGTAC 57.282 33.333 0.00 0.00 33.66 2.73
787 803 8.854614 AGAATCCAAATCATGCTATTAGTACC 57.145 34.615 0.00 0.00 0.00 3.34
788 804 8.439971 AGAATCCAAATCATGCTATTAGTACCA 58.560 33.333 0.00 0.00 0.00 3.25
789 805 7.986085 ATCCAAATCATGCTATTAGTACCAC 57.014 36.000 0.00 0.00 0.00 4.16
790 806 6.296026 TCCAAATCATGCTATTAGTACCACC 58.704 40.000 0.00 0.00 0.00 4.61
791 807 6.061441 CCAAATCATGCTATTAGTACCACCA 58.939 40.000 0.00 0.00 0.00 4.17
792 808 6.545666 CCAAATCATGCTATTAGTACCACCAA 59.454 38.462 0.00 0.00 0.00 3.67
793 809 7.231317 CCAAATCATGCTATTAGTACCACCAAT 59.769 37.037 0.00 0.00 0.00 3.16
794 810 7.986085 AATCATGCTATTAGTACCACCAATC 57.014 36.000 0.00 0.00 0.00 2.67
795 811 5.538118 TCATGCTATTAGTACCACCAATCG 58.462 41.667 0.00 0.00 0.00 3.34
799 815 2.282701 TTAGTACCACCAATCGTCGC 57.717 50.000 0.00 0.00 0.00 5.19
815 831 4.659874 GCGGCCGACACAACAACG 62.660 66.667 33.48 0.00 0.00 4.10
910 926 0.466372 GCATCTAAACCCTGCCCCTC 60.466 60.000 0.00 0.00 0.00 4.30
911 927 0.183731 CATCTAAACCCTGCCCCTCC 59.816 60.000 0.00 0.00 0.00 4.30
934 950 3.580458 CTCTGTTTTTCTCTCTCCCTCCA 59.420 47.826 0.00 0.00 0.00 3.86
940 956 2.239681 TCTCTCTCCCTCCAAGGTTC 57.760 55.000 0.00 0.00 31.93 3.62
1483 1499 7.416551 CCAATGTGTGTGCTTAAATGATGGATA 60.417 37.037 0.00 0.00 0.00 2.59
1489 1505 7.975058 TGTGTGCTTAAATGATGGATAATGTTG 59.025 33.333 0.00 0.00 0.00 3.33
1490 1506 7.975616 GTGTGCTTAAATGATGGATAATGTTGT 59.024 33.333 0.00 0.00 0.00 3.32
1491 1507 9.183368 TGTGCTTAAATGATGGATAATGTTGTA 57.817 29.630 0.00 0.00 0.00 2.41
1492 1508 9.450807 GTGCTTAAATGATGGATAATGTTGTAC 57.549 33.333 0.00 0.00 0.00 2.90
1493 1509 9.183368 TGCTTAAATGATGGATAATGTTGTACA 57.817 29.630 0.00 0.00 0.00 2.90
1573 1589 8.916062 TCTATCCTATTTTCACATGTACCGTAA 58.084 33.333 0.00 0.00 0.00 3.18
1952 2127 6.204852 TGGCCTTCTATACATTTCCATCAT 57.795 37.500 3.32 0.00 0.00 2.45
1975 2150 2.282180 TTTCGCCACCCTGGAAGC 60.282 61.111 0.00 0.00 40.96 3.86
2089 2264 4.510340 ACTGGCTTTTGTACAAGTACTTCG 59.490 41.667 4.77 4.43 37.00 3.79
2312 2487 2.351276 GGTGACAAGCGGGGTGAT 59.649 61.111 0.00 0.00 0.00 3.06
2523 2698 5.221402 GCTATGACTGAGATGAATGGAGTGA 60.221 44.000 0.00 0.00 0.00 3.41
2632 2807 3.630312 TGAACTGGGAAACTTTTTCCTCG 59.370 43.478 15.58 10.13 36.73 4.63
2669 2847 0.663153 GCTGTTTCGTCACCTGCTTT 59.337 50.000 0.00 0.00 0.00 3.51
2764 2942 7.933577 TCAATCTGTTTACACTCTGATTGTTCT 59.066 33.333 5.96 0.00 43.60 3.01
2779 2957 3.558931 TGTTCTCTGTTTGCTTCCTCA 57.441 42.857 0.00 0.00 0.00 3.86
2877 3055 9.326489 TGCTATAAACAGATATATGTCCTTCCT 57.674 33.333 2.95 0.00 31.50 3.36
3265 3580 2.040278 CTCAACCTCCCATTCCTTGTGA 59.960 50.000 0.00 0.00 0.00 3.58
3341 3656 2.432444 TGAATAAACCGTCCTTGCAGG 58.568 47.619 0.00 0.00 36.46 4.85
3353 3668 3.005791 GTCCTTGCAGGCACAAGTAATTT 59.994 43.478 16.12 0.00 44.55 1.82
3642 3990 2.167075 CCCTTGATTGACAATGGCTTCC 59.833 50.000 5.14 0.00 37.44 3.46
3650 3998 1.270550 GACAATGGCTTCCTTGTGTGG 59.729 52.381 0.00 0.00 35.80 4.17
3681 4029 8.087136 TGATTTGTTGTAATGAAATAGCAGCAA 58.913 29.630 0.00 0.00 32.70 3.91
3776 4124 1.402259 CTACTGTGGTAGGTCTGAGCG 59.598 57.143 0.62 0.00 41.10 5.03
3784 4132 1.192146 TAGGTCTGAGCGCCCAGTTT 61.192 55.000 19.02 8.13 35.71 2.66
3802 4150 0.609131 TTGGGTCTGCCAGCTTTAGC 60.609 55.000 0.00 0.00 42.49 3.09
3848 4196 9.952188 GGTTATCCTTTCTGAAGTTAATTATGC 57.048 33.333 0.00 0.00 0.00 3.14
3895 4243 4.496360 GGTACCAGAGCTCTCAAGTAAAC 58.504 47.826 14.96 7.70 0.00 2.01
4248 4597 2.045634 GAGCAGGCCATCAGTGCA 60.046 61.111 15.53 0.00 39.80 4.57
4458 4807 3.041211 TGGATATCAACAGGGTCCTGAG 58.959 50.000 22.46 14.10 46.30 3.35
4563 4912 2.473760 GCCATCTCAGCAGCAGCAG 61.474 63.158 3.17 0.00 45.49 4.24
4567 4916 2.878089 ATCTCAGCAGCAGCAGCCTG 62.878 60.000 6.10 4.69 45.49 4.85
4648 4997 5.221843 TGACAACCCAATATATCCTACTGCC 60.222 44.000 0.00 0.00 0.00 4.85
4649 4998 4.913968 ACAACCCAATATATCCTACTGCCT 59.086 41.667 0.00 0.00 0.00 4.75
4650 4999 5.372661 ACAACCCAATATATCCTACTGCCTT 59.627 40.000 0.00 0.00 0.00 4.35
4651 5000 6.561070 ACAACCCAATATATCCTACTGCCTTA 59.439 38.462 0.00 0.00 0.00 2.69
4652 5001 7.239773 ACAACCCAATATATCCTACTGCCTTAT 59.760 37.037 0.00 0.00 0.00 1.73
4760 5114 5.125097 TGCAATTTGTTGGCTGATTTTTGTT 59.875 32.000 0.00 0.00 0.00 2.83
4845 5199 6.967199 GCTACTTAATATTTTGCAGTGACCAC 59.033 38.462 0.00 0.00 0.00 4.16
5134 5488 0.179045 ACAGAGCGGCTCAACTTGTT 60.179 50.000 29.88 6.30 32.06 2.83
5191 5545 4.566545 TGTAGTCTGCCATTTTGTTGTG 57.433 40.909 0.00 0.00 0.00 3.33
5192 5546 4.203226 TGTAGTCTGCCATTTTGTTGTGA 58.797 39.130 0.00 0.00 0.00 3.58
5193 5547 3.996150 AGTCTGCCATTTTGTTGTGAG 57.004 42.857 0.00 0.00 0.00 3.51
5194 5548 3.554934 AGTCTGCCATTTTGTTGTGAGA 58.445 40.909 0.00 0.00 0.00 3.27
5196 5550 4.586001 AGTCTGCCATTTTGTTGTGAGAAT 59.414 37.500 0.00 0.00 0.00 2.40
5197 5551 4.682860 GTCTGCCATTTTGTTGTGAGAATG 59.317 41.667 0.00 0.00 0.00 2.67
5198 5552 3.391965 TGCCATTTTGTTGTGAGAATGC 58.608 40.909 0.00 0.00 0.00 3.56
5278 5652 5.221382 TGCTGGTAAACCGATCCTACTATTC 60.221 44.000 0.00 0.00 39.43 1.75
5316 5690 3.150767 CGAGGAACGGAGATCTAAGGAT 58.849 50.000 0.00 0.00 38.46 3.24
5361 5735 3.100545 GGTAGACCGATACCGTCCA 57.899 57.895 0.00 0.00 36.14 4.02
5362 5736 0.950116 GGTAGACCGATACCGTCCAG 59.050 60.000 0.00 0.00 36.14 3.86
5363 5737 0.310232 GTAGACCGATACCGTCCAGC 59.690 60.000 0.00 0.00 0.00 4.85
5364 5738 0.107066 TAGACCGATACCGTCCAGCA 60.107 55.000 0.00 0.00 0.00 4.41
5365 5739 1.065928 GACCGATACCGTCCAGCAG 59.934 63.158 0.00 0.00 0.00 4.24
5366 5740 1.379443 ACCGATACCGTCCAGCAGA 60.379 57.895 0.00 0.00 0.00 4.26
5372 5748 1.335132 TACCGTCCAGCAGATTCCCC 61.335 60.000 0.00 0.00 0.00 4.81
5386 5762 5.149976 CAGATTCCCCATAACCAATCCAAT 58.850 41.667 0.00 0.00 0.00 3.16
5402 5780 6.430308 CCAATCCAATCTGACATAAGATCCAG 59.570 42.308 0.00 0.00 35.83 3.86
5407 5785 6.705381 CCAATCTGACATAAGATCCAGAAGAC 59.295 42.308 0.00 0.00 38.88 3.01
5419 5797 2.304761 TCCAGAAGACGGGCAGTTATTT 59.695 45.455 0.00 0.00 0.00 1.40
5422 5800 4.475944 CAGAAGACGGGCAGTTATTTTTG 58.524 43.478 0.00 0.00 0.00 2.44
5427 5805 2.952978 ACGGGCAGTTATTTTTGTCACA 59.047 40.909 0.00 0.00 0.00 3.58
5458 5836 1.076332 CCTTTTACGCAACTCCCTCG 58.924 55.000 0.00 0.00 0.00 4.63
5462 5840 2.857592 TTACGCAACTCCCTCGATAC 57.142 50.000 0.00 0.00 0.00 2.24
5463 5841 1.027357 TACGCAACTCCCTCGATACC 58.973 55.000 0.00 0.00 0.00 2.73
5464 5842 0.968901 ACGCAACTCCCTCGATACCA 60.969 55.000 0.00 0.00 0.00 3.25
5465 5843 0.174845 CGCAACTCCCTCGATACCAA 59.825 55.000 0.00 0.00 0.00 3.67
5466 5844 1.404986 CGCAACTCCCTCGATACCAAA 60.405 52.381 0.00 0.00 0.00 3.28
5467 5845 2.706890 GCAACTCCCTCGATACCAAAA 58.293 47.619 0.00 0.00 0.00 2.44
5468 5846 3.078837 GCAACTCCCTCGATACCAAAAA 58.921 45.455 0.00 0.00 0.00 1.94
5504 5882 6.512342 TTAGGGACGTGTTCAAAAGAAAAA 57.488 33.333 0.00 0.00 0.00 1.94
5528 5906 4.625607 AATATTAGGGAAAGGAGAGCCG 57.374 45.455 0.00 0.00 39.96 5.52
5529 5907 1.880941 ATTAGGGAAAGGAGAGCCGT 58.119 50.000 0.00 0.00 39.96 5.68
5530 5908 1.652947 TTAGGGAAAGGAGAGCCGTT 58.347 50.000 0.00 0.00 38.65 4.44
5531 5909 0.902531 TAGGGAAAGGAGAGCCGTTG 59.097 55.000 0.00 0.00 35.94 4.10
5532 5910 1.377333 GGGAAAGGAGAGCCGTTGG 60.377 63.158 0.00 0.00 35.94 3.77
5533 5911 1.677552 GGAAAGGAGAGCCGTTGGA 59.322 57.895 0.00 0.00 35.94 3.53
5534 5912 0.391793 GGAAAGGAGAGCCGTTGGAG 60.392 60.000 0.00 0.00 35.94 3.86
5536 5914 1.208293 GAAAGGAGAGCCGTTGGAGAT 59.792 52.381 0.00 0.00 35.94 2.75
5537 5915 0.539051 AAGGAGAGCCGTTGGAGATG 59.461 55.000 0.00 0.00 39.96 2.90
5538 5916 1.522580 GGAGAGCCGTTGGAGATGC 60.523 63.158 0.00 0.00 0.00 3.91
5539 5917 1.522580 GAGAGCCGTTGGAGATGCC 60.523 63.158 0.00 0.00 37.10 4.40
5551 5929 4.090761 TGGAGATGCCATAACTTCCATC 57.909 45.455 0.00 0.00 43.33 3.51
5552 5930 3.718434 TGGAGATGCCATAACTTCCATCT 59.282 43.478 1.97 1.97 45.04 2.90
5553 5931 4.166725 TGGAGATGCCATAACTTCCATCTT 59.833 41.667 3.80 0.00 43.10 2.40
5554 5932 5.136105 GGAGATGCCATAACTTCCATCTTT 58.864 41.667 3.80 0.00 43.10 2.52
5555 5933 6.126507 TGGAGATGCCATAACTTCCATCTTTA 60.127 38.462 3.80 0.00 43.10 1.85
5556 5934 6.772716 GGAGATGCCATAACTTCCATCTTTAA 59.227 38.462 3.80 0.00 43.10 1.52
5557 5935 7.449704 GGAGATGCCATAACTTCCATCTTTAAT 59.550 37.037 3.80 0.00 43.10 1.40
5558 5936 9.507329 GAGATGCCATAACTTCCATCTTTAATA 57.493 33.333 3.80 0.00 43.10 0.98
5559 5937 9.289782 AGATGCCATAACTTCCATCTTTAATAC 57.710 33.333 0.00 0.00 40.98 1.89
5560 5938 7.490962 TGCCATAACTTCCATCTTTAATACG 57.509 36.000 0.00 0.00 0.00 3.06
5561 5939 6.485313 TGCCATAACTTCCATCTTTAATACGG 59.515 38.462 0.00 0.00 0.00 4.02
5562 5940 6.708949 GCCATAACTTCCATCTTTAATACGGA 59.291 38.462 0.00 0.00 0.00 4.69
5563 5941 7.390718 GCCATAACTTCCATCTTTAATACGGAT 59.609 37.037 0.00 0.00 0.00 4.18
5564 5942 8.721478 CCATAACTTCCATCTTTAATACGGATG 58.279 37.037 0.00 0.00 37.26 3.51
5565 5943 6.619801 AACTTCCATCTTTAATACGGATGC 57.380 37.500 0.00 0.00 36.49 3.91
5566 5944 5.063880 ACTTCCATCTTTAATACGGATGCC 58.936 41.667 0.00 0.00 36.49 4.40
5567 5945 4.698201 TCCATCTTTAATACGGATGCCA 57.302 40.909 0.00 0.00 36.49 4.92
5568 5946 5.241403 TCCATCTTTAATACGGATGCCAT 57.759 39.130 0.00 0.00 36.49 4.40
5569 5947 5.245531 TCCATCTTTAATACGGATGCCATC 58.754 41.667 0.00 0.00 36.49 3.51
5570 5948 4.396166 CCATCTTTAATACGGATGCCATCC 59.604 45.833 14.03 14.03 46.22 3.51
5582 5960 4.303086 GATGCCATCCAAGAAGTGATTG 57.697 45.455 0.00 0.00 0.00 2.67
5583 5961 3.159213 TGCCATCCAAGAAGTGATTGT 57.841 42.857 0.00 0.00 0.00 2.71
5584 5962 3.084039 TGCCATCCAAGAAGTGATTGTC 58.916 45.455 0.00 0.00 0.00 3.18
5585 5963 2.424956 GCCATCCAAGAAGTGATTGTCC 59.575 50.000 0.00 0.00 0.00 4.02
5586 5964 3.689347 CCATCCAAGAAGTGATTGTCCA 58.311 45.455 0.00 0.00 0.00 4.02
5587 5965 4.275810 CCATCCAAGAAGTGATTGTCCAT 58.724 43.478 0.00 0.00 0.00 3.41
5588 5966 4.708421 CCATCCAAGAAGTGATTGTCCATT 59.292 41.667 0.00 0.00 0.00 3.16
5589 5967 5.186409 CCATCCAAGAAGTGATTGTCCATTT 59.814 40.000 0.00 0.00 0.00 2.32
5590 5968 6.377996 CCATCCAAGAAGTGATTGTCCATTTA 59.622 38.462 0.00 0.00 0.00 1.40
5591 5969 7.069085 CCATCCAAGAAGTGATTGTCCATTTAT 59.931 37.037 0.00 0.00 0.00 1.40
5592 5970 8.472413 CATCCAAGAAGTGATTGTCCATTTATT 58.528 33.333 0.00 0.00 0.00 1.40
5593 5971 8.421249 TCCAAGAAGTGATTGTCCATTTATTT 57.579 30.769 0.00 0.00 0.00 1.40
5594 5972 8.869109 TCCAAGAAGTGATTGTCCATTTATTTT 58.131 29.630 0.00 0.00 0.00 1.82
5595 5973 9.143631 CCAAGAAGTGATTGTCCATTTATTTTC 57.856 33.333 0.00 0.00 0.00 2.29
5596 5974 9.695526 CAAGAAGTGATTGTCCATTTATTTTCA 57.304 29.630 0.00 0.00 0.00 2.69
5597 5975 9.696917 AAGAAGTGATTGTCCATTTATTTTCAC 57.303 29.630 0.00 0.00 34.02 3.18
5598 5976 9.082313 AGAAGTGATTGTCCATTTATTTTCACT 57.918 29.630 0.00 0.00 43.08 3.41
5601 5979 8.462016 AGTGATTGTCCATTTATTTTCACTAGC 58.538 33.333 0.00 0.00 40.39 3.42
5602 5980 8.243426 GTGATTGTCCATTTATTTTCACTAGCA 58.757 33.333 0.00 0.00 31.78 3.49
5603 5981 8.801299 TGATTGTCCATTTATTTTCACTAGCAA 58.199 29.630 0.00 0.00 0.00 3.91
5604 5982 9.638239 GATTGTCCATTTATTTTCACTAGCAAA 57.362 29.630 0.00 0.00 0.00 3.68
5605 5983 9.995003 ATTGTCCATTTATTTTCACTAGCAAAA 57.005 25.926 3.35 3.35 0.00 2.44
5606 5984 9.474920 TTGTCCATTTATTTTCACTAGCAAAAG 57.525 29.630 6.41 0.00 0.00 2.27
5609 5987 9.077885 TCCATTTATTTTCACTAGCAAAAGAGT 57.922 29.630 6.41 0.00 0.00 3.24
5615 5993 4.552166 TCACTAGCAAAAGAGTTTGTGC 57.448 40.909 0.00 0.00 45.06 4.57
5623 6001 1.908065 AAGAGTTTGTGCGTTGCAAC 58.092 45.000 19.89 19.89 41.47 4.17
5642 6020 4.578928 GCAACGGGAGAAAATATACCACAT 59.421 41.667 0.00 0.00 0.00 3.21
5645 6023 5.751586 ACGGGAGAAAATATACCACATGTT 58.248 37.500 0.00 0.00 0.00 2.71
5646 6024 6.891388 ACGGGAGAAAATATACCACATGTTA 58.109 36.000 0.00 0.00 0.00 2.41
5647 6025 7.340256 ACGGGAGAAAATATACCACATGTTAA 58.660 34.615 0.00 0.00 0.00 2.01
5668 6046 7.757624 TGTTAAAAGAAAAGACACATGTCCAAC 59.242 33.333 8.41 0.00 45.85 3.77
5682 6060 3.061848 CAACGCCGGCCCTCAAAT 61.062 61.111 23.46 0.00 0.00 2.32
5683 6061 1.747367 CAACGCCGGCCCTCAAATA 60.747 57.895 23.46 0.00 0.00 1.40
5684 6062 1.747745 AACGCCGGCCCTCAAATAC 60.748 57.895 23.46 0.00 0.00 1.89
5693 6080 1.648504 CCCTCAAATACGTTCGGACC 58.351 55.000 0.00 0.00 0.00 4.46
5723 6110 1.586028 GCGTGTTGTGCCATCCAAT 59.414 52.632 0.00 0.00 0.00 3.16
5729 6116 0.322906 TTGTGCCATCCAATGCGGTA 60.323 50.000 0.00 0.00 35.57 4.02
5730 6117 0.322906 TGTGCCATCCAATGCGGTAA 60.323 50.000 0.00 0.00 35.57 2.85
5731 6118 1.032014 GTGCCATCCAATGCGGTAAT 58.968 50.000 0.00 0.00 35.57 1.89
5732 6119 1.031235 TGCCATCCAATGCGGTAATG 58.969 50.000 0.00 0.00 35.57 1.90
5733 6120 1.032014 GCCATCCAATGCGGTAATGT 58.968 50.000 0.00 0.00 35.57 2.71
5734 6121 2.226330 GCCATCCAATGCGGTAATGTA 58.774 47.619 0.00 0.00 35.57 2.29
5735 6122 2.819608 GCCATCCAATGCGGTAATGTAT 59.180 45.455 0.00 0.00 35.57 2.29
5736 6123 3.119849 GCCATCCAATGCGGTAATGTATC 60.120 47.826 0.00 0.00 35.57 2.24
5737 6124 4.071423 CCATCCAATGCGGTAATGTATCA 58.929 43.478 0.00 0.00 35.57 2.15
5738 6125 4.518590 CCATCCAATGCGGTAATGTATCAA 59.481 41.667 0.00 0.00 35.57 2.57
5739 6126 5.183713 CCATCCAATGCGGTAATGTATCAAT 59.816 40.000 0.00 0.00 35.57 2.57
5740 6127 6.294675 CCATCCAATGCGGTAATGTATCAATT 60.295 38.462 0.00 0.00 35.57 2.32
5746 6133 3.363970 GCGGTAATGTATCAATTCGCAGG 60.364 47.826 0.00 0.00 41.28 4.85
5748 6135 3.058224 GGTAATGTATCAATTCGCAGGGC 60.058 47.826 0.00 0.00 0.00 5.19
5811 6198 1.883084 GCGTCCGGATAGCACCAAG 60.883 63.158 24.23 0.00 0.00 3.61
5812 6199 1.515954 CGTCCGGATAGCACCAAGT 59.484 57.895 7.81 0.00 0.00 3.16
5826 6213 1.093159 CCAAGTGCCAGCTTCTGATC 58.907 55.000 0.00 0.00 32.44 2.92
5830 6217 1.066286 AGTGCCAGCTTCTGATCACTC 60.066 52.381 12.45 0.00 39.15 3.51
5832 6219 1.206610 TGCCAGCTTCTGATCACTCTC 59.793 52.381 0.00 0.00 32.44 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.440647 ACTGATGGTCCTTACTCACAGATAAA 59.559 38.462 0.00 0.00 0.00 1.40
1 2 5.958380 ACTGATGGTCCTTACTCACAGATAA 59.042 40.000 0.00 0.00 0.00 1.75
2 3 5.519808 ACTGATGGTCCTTACTCACAGATA 58.480 41.667 0.00 0.00 0.00 1.98
3 4 4.357325 ACTGATGGTCCTTACTCACAGAT 58.643 43.478 0.00 0.00 0.00 2.90
4 5 3.779444 ACTGATGGTCCTTACTCACAGA 58.221 45.455 0.00 0.00 0.00 3.41
5 6 4.021104 TCAACTGATGGTCCTTACTCACAG 60.021 45.833 0.00 0.00 0.00 3.66
6 7 3.901222 TCAACTGATGGTCCTTACTCACA 59.099 43.478 0.00 0.00 0.00 3.58
7 8 4.537135 TCAACTGATGGTCCTTACTCAC 57.463 45.455 0.00 0.00 0.00 3.51
8 9 5.013079 ACAATCAACTGATGGTCCTTACTCA 59.987 40.000 0.00 0.00 33.56 3.41
9 10 5.491982 ACAATCAACTGATGGTCCTTACTC 58.508 41.667 0.00 0.00 33.56 2.59
10 11 5.505181 ACAATCAACTGATGGTCCTTACT 57.495 39.130 0.00 0.00 33.56 2.24
11 12 7.201732 CCATAACAATCAACTGATGGTCCTTAC 60.202 40.741 0.14 0.00 37.71 2.34
12 13 6.828273 CCATAACAATCAACTGATGGTCCTTA 59.172 38.462 0.14 0.00 37.71 2.69
13 14 5.653769 CCATAACAATCAACTGATGGTCCTT 59.346 40.000 0.14 0.00 37.71 3.36
14 15 5.195940 CCATAACAATCAACTGATGGTCCT 58.804 41.667 0.14 0.00 37.71 3.85
15 16 4.202050 GCCATAACAATCAACTGATGGTCC 60.202 45.833 0.14 0.00 37.71 4.46
18 19 3.700539 TGGCCATAACAATCAACTGATGG 59.299 43.478 0.00 0.00 37.49 3.51
54 55 7.067494 CCCATCCTAACGAGAAGATTTTCATTT 59.933 37.037 0.00 0.00 35.70 2.32
64 65 1.473434 GCCACCCATCCTAACGAGAAG 60.473 57.143 0.00 0.00 0.00 2.85
77 78 3.970410 CCAGAAGCTGGCCACCCA 61.970 66.667 0.00 0.00 45.13 4.51
87 88 4.370917 TCAACAAAGCAAATTCCAGAAGC 58.629 39.130 0.00 0.00 0.00 3.86
89 90 6.091986 GTGTTTCAACAAAGCAAATTCCAGAA 59.908 34.615 0.00 0.00 41.21 3.02
129 130 3.491342 AGGAAAGGAGAGGCAAAGAAAC 58.509 45.455 0.00 0.00 0.00 2.78
135 136 3.191888 AGTAGAGGAAAGGAGAGGCAA 57.808 47.619 0.00 0.00 0.00 4.52
136 137 2.930109 AGTAGAGGAAAGGAGAGGCA 57.070 50.000 0.00 0.00 0.00 4.75
142 143 4.530946 CACCCAACTAAGTAGAGGAAAGGA 59.469 45.833 0.00 0.00 0.00 3.36
143 144 4.833390 CACCCAACTAAGTAGAGGAAAGG 58.167 47.826 0.00 0.00 0.00 3.11
144 145 4.020128 AGCACCCAACTAAGTAGAGGAAAG 60.020 45.833 0.00 0.00 0.00 2.62
145 146 3.908103 AGCACCCAACTAAGTAGAGGAAA 59.092 43.478 0.00 0.00 0.00 3.13
146 147 3.517612 AGCACCCAACTAAGTAGAGGAA 58.482 45.455 0.00 0.00 0.00 3.36
158 159 3.181487 CCAGCAAATATGTAGCACCCAAC 60.181 47.826 0.00 0.00 0.00 3.77
185 186 1.973515 TGCATAGGATTCGCCATCTCT 59.026 47.619 0.00 0.00 40.02 3.10
194 195 3.571401 CACCTCCCAATTGCATAGGATTC 59.429 47.826 19.86 0.00 0.00 2.52
207 208 2.905415 ATCAATTGAGCACCTCCCAA 57.095 45.000 14.54 0.00 0.00 4.12
208 209 2.309755 AGAATCAATTGAGCACCTCCCA 59.690 45.455 14.54 0.00 0.00 4.37
228 229 5.763444 TGAAGAAAAGCGTAGATCGAAAG 57.237 39.130 0.00 0.00 42.86 2.62
240 241 0.522076 CGCCGCTGATGAAGAAAAGC 60.522 55.000 0.00 0.00 0.00 3.51
243 244 0.605319 AACCGCCGCTGATGAAGAAA 60.605 50.000 0.00 0.00 0.00 2.52
244 245 1.003839 AACCGCCGCTGATGAAGAA 60.004 52.632 0.00 0.00 0.00 2.52
245 246 1.741401 CAACCGCCGCTGATGAAGA 60.741 57.895 0.00 0.00 0.00 2.87
246 247 2.787249 CAACCGCCGCTGATGAAG 59.213 61.111 0.00 0.00 0.00 3.02
247 248 3.430862 GCAACCGCCGCTGATGAA 61.431 61.111 0.00 0.00 0.00 2.57
248 249 3.899981 AAGCAACCGCCGCTGATGA 62.900 57.895 0.00 0.00 40.35 2.92
249 250 2.476534 AAAAGCAACCGCCGCTGATG 62.477 55.000 0.00 0.00 40.35 3.07
250 251 1.805428 AAAAAGCAACCGCCGCTGAT 61.805 50.000 0.00 0.00 40.35 2.90
251 252 2.400896 GAAAAAGCAACCGCCGCTGA 62.401 55.000 0.00 0.00 40.35 4.26
252 253 2.016165 GAAAAAGCAACCGCCGCTG 61.016 57.895 0.00 0.00 40.35 5.18
253 254 2.193536 AGAAAAAGCAACCGCCGCT 61.194 52.632 0.00 0.00 42.98 5.52
254 255 2.016165 CAGAAAAAGCAACCGCCGC 61.016 57.895 0.00 0.00 39.83 6.53
255 256 1.371635 CCAGAAAAAGCAACCGCCG 60.372 57.895 0.00 0.00 39.83 6.46
256 257 0.597377 CACCAGAAAAAGCAACCGCC 60.597 55.000 0.00 0.00 39.83 6.13
257 258 1.215014 GCACCAGAAAAAGCAACCGC 61.215 55.000 0.00 0.00 38.99 5.68
258 259 0.597377 GGCACCAGAAAAAGCAACCG 60.597 55.000 0.00 0.00 0.00 4.44
259 260 3.289128 GGCACCAGAAAAAGCAACC 57.711 52.632 0.00 0.00 0.00 3.77
281 282 0.397957 TCGTGCTAAGGCCCATAGGA 60.398 55.000 13.52 8.89 37.74 2.94
282 283 0.249911 GTCGTGCTAAGGCCCATAGG 60.250 60.000 13.52 0.04 37.74 2.57
283 284 0.597637 CGTCGTGCTAAGGCCCATAG 60.598 60.000 0.00 3.63 37.74 2.23
284 285 1.038681 TCGTCGTGCTAAGGCCCATA 61.039 55.000 0.00 0.00 37.74 2.74
285 286 2.186903 CGTCGTGCTAAGGCCCAT 59.813 61.111 0.00 0.00 37.74 4.00
286 287 2.992689 TCGTCGTGCTAAGGCCCA 60.993 61.111 0.00 0.00 37.74 5.36
287 288 2.502692 AAGTCGTCGTGCTAAGGCCC 62.503 60.000 0.00 0.00 37.74 5.80
295 297 1.371389 AGTTCGGAAGTCGTCGTGC 60.371 57.895 0.00 0.00 40.32 5.34
298 300 0.237761 AGACAGTTCGGAAGTCGTCG 59.762 55.000 15.78 0.00 40.32 5.12
301 303 3.434641 TGTAGTAGACAGTTCGGAAGTCG 59.565 47.826 0.00 0.00 37.36 4.18
308 310 7.411588 GCAAACCTTATTGTAGTAGACAGTTCG 60.412 40.741 0.00 0.00 39.88 3.95
309 311 7.148457 GGCAAACCTTATTGTAGTAGACAGTTC 60.148 40.741 0.00 0.00 39.88 3.01
310 312 6.653740 GGCAAACCTTATTGTAGTAGACAGTT 59.346 38.462 0.00 0.00 39.88 3.16
311 313 6.171213 GGCAAACCTTATTGTAGTAGACAGT 58.829 40.000 0.00 0.00 39.88 3.55
314 316 4.569564 CGGGCAAACCTTATTGTAGTAGAC 59.430 45.833 0.00 0.00 36.97 2.59
323 325 1.677820 CGGAGTCGGGCAAACCTTATT 60.678 52.381 0.00 0.00 36.97 1.40
341 343 0.035881 CATCACCCCTCCATCATCGG 59.964 60.000 0.00 0.00 0.00 4.18
350 352 4.899239 CCGCGCTCATCACCCCTC 62.899 72.222 5.56 0.00 0.00 4.30
377 379 3.633986 GGCTATAAGCATTGGAGCAAGTT 59.366 43.478 0.78 0.00 44.75 2.66
380 382 2.221169 CGGCTATAAGCATTGGAGCAA 58.779 47.619 0.78 0.00 44.75 3.91
381 383 1.140852 ACGGCTATAAGCATTGGAGCA 59.859 47.619 0.78 0.00 44.75 4.26
398 400 0.381089 CTTAGACCACCTAGCGACGG 59.619 60.000 0.00 0.00 0.00 4.79
407 409 4.222124 ACATCCATGTTCTTAGACCACC 57.778 45.455 0.00 0.00 37.90 4.61
408 410 9.561069 AATATTACATCCATGTTCTTAGACCAC 57.439 33.333 0.00 0.00 41.97 4.16
469 474 9.508567 GAGCACTTTTCAACTTCCATTATATTC 57.491 33.333 0.00 0.00 0.00 1.75
476 481 3.476552 TCGAGCACTTTTCAACTTCCAT 58.523 40.909 0.00 0.00 0.00 3.41
477 482 2.912771 TCGAGCACTTTTCAACTTCCA 58.087 42.857 0.00 0.00 0.00 3.53
485 490 4.089065 GCATGTTGAATTCGAGCACTTTTC 59.911 41.667 0.04 0.00 0.00 2.29
529 545 4.880759 TGGTGTAATGCATGTTTCTTTGG 58.119 39.130 0.00 0.00 0.00 3.28
534 550 6.646240 AGTTTGATTGGTGTAATGCATGTTTC 59.354 34.615 0.00 0.00 0.00 2.78
591 607 6.256757 CAGTTCGATTGGTTTTGCCTTAAAAA 59.743 34.615 0.00 0.00 39.79 1.94
592 608 5.751028 CAGTTCGATTGGTTTTGCCTTAAAA 59.249 36.000 0.00 0.00 38.35 1.52
593 609 5.285651 CAGTTCGATTGGTTTTGCCTTAAA 58.714 37.500 0.00 0.00 38.35 1.52
594 610 4.794655 GCAGTTCGATTGGTTTTGCCTTAA 60.795 41.667 0.00 0.00 38.35 1.85
595 611 3.305064 GCAGTTCGATTGGTTTTGCCTTA 60.305 43.478 0.00 0.00 38.35 2.69
596 612 2.545742 GCAGTTCGATTGGTTTTGCCTT 60.546 45.455 0.00 0.00 38.35 4.35
597 613 1.000274 GCAGTTCGATTGGTTTTGCCT 60.000 47.619 0.00 0.00 38.35 4.75
598 614 1.000274 AGCAGTTCGATTGGTTTTGCC 60.000 47.619 0.00 0.00 37.90 4.52
599 615 2.422276 AGCAGTTCGATTGGTTTTGC 57.578 45.000 0.00 0.00 0.00 3.68
600 616 4.111916 ACAAAGCAGTTCGATTGGTTTTG 58.888 39.130 18.98 16.46 42.44 2.44
601 617 4.385358 ACAAAGCAGTTCGATTGGTTTT 57.615 36.364 18.98 11.43 42.44 2.43
602 618 4.385358 AACAAAGCAGTTCGATTGGTTT 57.615 36.364 16.96 16.96 44.41 3.27
603 619 4.385358 AAACAAAGCAGTTCGATTGGTT 57.615 36.364 8.53 8.53 38.84 3.67
611 627 4.270084 GGTTTTGCCTAAACAAAGCAGTTC 59.730 41.667 12.02 0.00 46.44 3.01
621 637 5.815222 ACAGTTTGATTGGTTTTGCCTAAAC 59.185 36.000 3.60 3.60 44.39 2.01
647 663 7.095017 GGTTGGTGATTTCTCAAACAAACAAAA 60.095 33.333 3.16 0.00 37.79 2.44
651 667 5.415221 TGGTTGGTGATTTCTCAAACAAAC 58.585 37.500 0.00 0.00 38.09 2.93
654 670 5.667539 TTTGGTTGGTGATTTCTCAAACA 57.332 34.783 0.00 0.00 36.46 2.83
656 672 6.105333 CAGTTTTGGTTGGTGATTTCTCAAA 58.895 36.000 0.00 0.00 31.85 2.69
657 673 5.659463 CAGTTTTGGTTGGTGATTTCTCAA 58.341 37.500 0.00 0.00 31.85 3.02
658 674 4.441356 GCAGTTTTGGTTGGTGATTTCTCA 60.441 41.667 0.00 0.00 0.00 3.27
659 675 4.051237 GCAGTTTTGGTTGGTGATTTCTC 58.949 43.478 0.00 0.00 0.00 2.87
661 677 3.803778 CAGCAGTTTTGGTTGGTGATTTC 59.196 43.478 0.00 0.00 43.52 2.17
662 678 3.432046 CCAGCAGTTTTGGTTGGTGATTT 60.432 43.478 5.35 0.00 43.52 2.17
663 679 2.102925 CCAGCAGTTTTGGTTGGTGATT 59.897 45.455 5.35 0.00 43.52 2.57
665 681 1.110442 CCAGCAGTTTTGGTTGGTGA 58.890 50.000 5.35 0.00 43.52 4.02
666 682 0.104671 CCCAGCAGTTTTGGTTGGTG 59.895 55.000 0.00 0.00 41.24 4.17
667 683 0.032615 TCCCAGCAGTTTTGGTTGGT 60.033 50.000 0.00 0.00 38.42 3.67
668 684 0.389025 GTCCCAGCAGTTTTGGTTGG 59.611 55.000 0.00 0.00 38.58 3.77
669 685 0.030638 CGTCCCAGCAGTTTTGGTTG 59.969 55.000 0.00 0.00 33.73 3.77
670 686 0.106918 TCGTCCCAGCAGTTTTGGTT 60.107 50.000 0.00 0.00 33.73 3.67
671 687 0.818040 GTCGTCCCAGCAGTTTTGGT 60.818 55.000 0.00 0.00 33.73 3.67
672 688 1.515521 GGTCGTCCCAGCAGTTTTGG 61.516 60.000 0.00 0.00 35.41 3.28
673 689 0.535102 AGGTCGTCCCAGCAGTTTTG 60.535 55.000 0.00 0.00 34.66 2.44
674 690 0.250338 GAGGTCGTCCCAGCAGTTTT 60.250 55.000 0.00 0.00 34.66 2.43
747 763 4.214310 TGGATTCTCTTGTGCCTCAAAAA 58.786 39.130 0.00 0.00 35.48 1.94
748 764 3.831323 TGGATTCTCTTGTGCCTCAAAA 58.169 40.909 0.00 0.00 35.48 2.44
750 766 3.507162 TTGGATTCTCTTGTGCCTCAA 57.493 42.857 0.00 0.00 34.61 3.02
751 767 3.507162 TTTGGATTCTCTTGTGCCTCA 57.493 42.857 0.00 0.00 0.00 3.86
752 768 4.012374 TGATTTGGATTCTCTTGTGCCTC 58.988 43.478 0.00 0.00 0.00 4.70
754 770 4.679662 CATGATTTGGATTCTCTTGTGCC 58.320 43.478 0.00 0.00 0.00 5.01
755 771 4.110482 GCATGATTTGGATTCTCTTGTGC 58.890 43.478 0.00 0.00 0.00 4.57
756 772 5.578005 AGCATGATTTGGATTCTCTTGTG 57.422 39.130 0.00 0.00 0.00 3.33
757 773 7.893124 AATAGCATGATTTGGATTCTCTTGT 57.107 32.000 0.00 0.00 0.00 3.16
758 774 9.064706 ACTAATAGCATGATTTGGATTCTCTTG 57.935 33.333 0.00 0.00 0.00 3.02
760 776 9.717942 GTACTAATAGCATGATTTGGATTCTCT 57.282 33.333 0.00 0.00 0.00 3.10
761 777 8.940952 GGTACTAATAGCATGATTTGGATTCTC 58.059 37.037 0.00 0.00 0.00 2.87
762 778 8.439971 TGGTACTAATAGCATGATTTGGATTCT 58.560 33.333 0.00 0.00 33.86 2.40
763 779 8.507249 GTGGTACTAATAGCATGATTTGGATTC 58.493 37.037 0.00 0.00 40.77 2.52
764 780 7.448469 GGTGGTACTAATAGCATGATTTGGATT 59.552 37.037 0.00 0.00 40.77 3.01
765 781 6.942576 GGTGGTACTAATAGCATGATTTGGAT 59.057 38.462 0.00 0.00 40.77 3.41
766 782 6.126623 TGGTGGTACTAATAGCATGATTTGGA 60.127 38.462 0.00 0.00 40.77 3.53
767 783 6.061441 TGGTGGTACTAATAGCATGATTTGG 58.939 40.000 0.00 0.00 40.77 3.28
768 784 7.566760 TTGGTGGTACTAATAGCATGATTTG 57.433 36.000 0.00 0.00 40.77 2.32
769 785 7.173218 CGATTGGTGGTACTAATAGCATGATTT 59.827 37.037 0.00 0.00 40.77 2.17
770 786 6.650807 CGATTGGTGGTACTAATAGCATGATT 59.349 38.462 0.00 0.00 40.77 2.57
771 787 6.166279 CGATTGGTGGTACTAATAGCATGAT 58.834 40.000 0.00 0.00 40.77 2.45
772 788 5.069914 ACGATTGGTGGTACTAATAGCATGA 59.930 40.000 0.00 0.00 40.77 3.07
773 789 5.297547 ACGATTGGTGGTACTAATAGCATG 58.702 41.667 0.00 0.00 40.77 4.06
774 790 5.539048 GACGATTGGTGGTACTAATAGCAT 58.461 41.667 0.00 0.00 40.77 3.79
775 791 4.498513 CGACGATTGGTGGTACTAATAGCA 60.499 45.833 0.00 0.00 36.45 3.49
776 792 3.979495 CGACGATTGGTGGTACTAATAGC 59.021 47.826 0.00 0.00 29.04 2.97
777 793 3.979495 GCGACGATTGGTGGTACTAATAG 59.021 47.826 0.00 0.00 29.04 1.73
778 794 3.548616 CGCGACGATTGGTGGTACTAATA 60.549 47.826 0.00 0.00 29.04 0.98
779 795 2.797087 CGCGACGATTGGTGGTACTAAT 60.797 50.000 0.00 0.00 31.69 1.73
780 796 1.467883 CGCGACGATTGGTGGTACTAA 60.468 52.381 0.00 0.00 0.00 2.24
781 797 0.099259 CGCGACGATTGGTGGTACTA 59.901 55.000 0.00 0.00 0.00 1.82
782 798 1.153901 CGCGACGATTGGTGGTACT 60.154 57.895 0.00 0.00 0.00 2.73
783 799 2.162754 CCGCGACGATTGGTGGTAC 61.163 63.158 8.23 0.00 0.00 3.34
784 800 2.182284 CCGCGACGATTGGTGGTA 59.818 61.111 8.23 0.00 0.00 3.25
799 815 4.659874 GCGTTGTTGTGTCGGCCG 62.660 66.667 22.12 22.12 0.00 6.13
806 822 1.654137 GGCTCGTTGCGTTGTTGTG 60.654 57.895 0.00 0.00 44.05 3.33
910 926 2.909662 AGGGAGAGAGAAAAACAGAGGG 59.090 50.000 0.00 0.00 0.00 4.30
911 927 3.055458 GGAGGGAGAGAGAAAAACAGAGG 60.055 52.174 0.00 0.00 0.00 3.69
934 950 2.943036 TGCGAAACCCTAAGAACCTT 57.057 45.000 0.00 0.00 0.00 3.50
940 956 2.014594 GCGGATGCGAAACCCTAAG 58.985 57.895 12.10 0.00 0.00 2.18
1308 1324 0.543174 ACCTGATATCCTCGCCTCCC 60.543 60.000 0.00 0.00 0.00 4.30
1419 1435 6.734104 AATGCAACAATTCTCTCAGTAGAC 57.266 37.500 0.00 0.00 0.00 2.59
1573 1589 3.550437 AGCAAACACTGAGTCACTTCT 57.450 42.857 0.00 0.00 0.00 2.85
1772 1788 4.178545 ACAGCACATTTATCAAGTTGCC 57.821 40.909 0.00 0.00 0.00 4.52
1866 1883 8.198109 CCCTCCTCCATAACTTAATATATGACG 58.802 40.741 8.48 0.00 32.43 4.35
2312 2487 7.394077 ACAAATATTGTGTGATCAGAACCATCA 59.606 33.333 0.00 0.00 43.48 3.07
2764 2942 4.202398 ACTCTCATTGAGGAAGCAAACAGA 60.202 41.667 13.59 0.00 46.72 3.41
2779 2957 5.220710 AGTGCTAACAGAACACTCTCATT 57.779 39.130 0.00 0.00 40.56 2.57
2877 3055 6.493115 TCCCAATCTTTACAAATGAAAGAGCA 59.507 34.615 4.36 0.00 44.05 4.26
3138 3316 5.356190 TGCTGGCAAATGAGAGATAGAAAAG 59.644 40.000 0.00 0.00 0.00 2.27
3147 3325 2.490509 TGACAATGCTGGCAAATGAGAG 59.509 45.455 15.22 0.00 37.77 3.20
3148 3326 2.490509 CTGACAATGCTGGCAAATGAGA 59.509 45.455 15.22 4.21 41.21 3.27
3202 3516 5.151454 TGGGAATTACAAACTGTTTGGGAT 58.849 37.500 30.29 21.72 44.81 3.85
3265 3580 4.455877 GCACTACAAAAGATTAGGTGCACT 59.544 41.667 17.98 5.41 35.64 4.40
3642 3990 3.799281 ACAAATCAACCACCACACAAG 57.201 42.857 0.00 0.00 0.00 3.16
3650 3998 8.647226 GCTATTTCATTACAACAAATCAACCAC 58.353 33.333 0.00 0.00 0.00 4.16
3784 4132 1.002134 GCTAAAGCTGGCAGACCCA 60.002 57.895 20.86 0.00 42.79 4.51
3848 4196 3.669557 GCTGCCGTAACAAAACATACAGG 60.670 47.826 0.00 0.00 0.00 4.00
3895 4243 3.038417 GGATCATTCGCCGCCTCG 61.038 66.667 0.00 0.00 0.00 4.63
3955 4303 9.965824 GAAAAATAAGGAAACATCAACTCTCAA 57.034 29.630 0.00 0.00 0.00 3.02
4248 4597 2.915604 ACCAATCTGAGACCCATTCAGT 59.084 45.455 2.57 0.00 42.11 3.41
4458 4807 0.182537 TGGGTGCACCATAGTATGCC 59.817 55.000 35.78 16.31 46.80 4.40
4713 5067 6.183360 GCAGTTTGAGAAGCGTATTTGTATCT 60.183 38.462 0.00 0.00 0.00 1.98
4760 5114 9.755804 TTAAGCATGTGAACAATGTTCAAAATA 57.244 25.926 27.77 15.77 0.00 1.40
5197 5551 6.018832 ACACAGTTATTTTGATTTGCTGTTGC 60.019 34.615 0.00 0.00 34.04 4.17
5198 5552 7.222417 TGACACAGTTATTTTGATTTGCTGTTG 59.778 33.333 0.00 0.00 34.04 3.33
5278 5652 6.736853 CGTTCCTCGCACTTTTATAGAAAAAG 59.263 38.462 8.32 8.32 41.63 2.27
5293 5667 1.676529 CTTAGATCTCCGTTCCTCGCA 59.323 52.381 0.00 0.00 38.35 5.10
5357 5731 2.576615 GTTATGGGGAATCTGCTGGAC 58.423 52.381 0.00 0.00 0.00 4.02
5358 5732 1.494721 GGTTATGGGGAATCTGCTGGA 59.505 52.381 0.00 0.00 0.00 3.86
5359 5733 1.215173 TGGTTATGGGGAATCTGCTGG 59.785 52.381 0.00 0.00 0.00 4.85
5360 5734 2.734755 TGGTTATGGGGAATCTGCTG 57.265 50.000 0.00 0.00 0.00 4.41
5361 5735 3.437052 GGATTGGTTATGGGGAATCTGCT 60.437 47.826 0.00 0.00 0.00 4.24
5362 5736 2.893489 GGATTGGTTATGGGGAATCTGC 59.107 50.000 0.00 0.00 0.00 4.26
5363 5737 4.183223 TGGATTGGTTATGGGGAATCTG 57.817 45.455 0.00 0.00 0.00 2.90
5364 5738 4.898014 TTGGATTGGTTATGGGGAATCT 57.102 40.909 0.00 0.00 0.00 2.40
5365 5739 5.244626 CAGATTGGATTGGTTATGGGGAATC 59.755 44.000 0.00 0.00 0.00 2.52
5366 5740 5.103129 TCAGATTGGATTGGTTATGGGGAAT 60.103 40.000 0.00 0.00 0.00 3.01
5372 5748 8.681486 TCTTATGTCAGATTGGATTGGTTATG 57.319 34.615 0.00 0.00 0.00 1.90
5386 5762 4.339530 CCGTCTTCTGGATCTTATGTCAGA 59.660 45.833 0.00 0.00 34.84 3.27
5402 5780 4.023536 TGACAAAAATAACTGCCCGTCTTC 60.024 41.667 0.00 0.00 0.00 2.87
5407 5785 3.634568 TGTGACAAAAATAACTGCCCG 57.365 42.857 0.00 0.00 0.00 6.13
5438 5816 1.337447 CGAGGGAGTTGCGTAAAAGGA 60.337 52.381 0.00 0.00 0.00 3.36
5440 5818 2.074547 TCGAGGGAGTTGCGTAAAAG 57.925 50.000 0.00 0.00 0.00 2.27
5447 5825 2.396590 TTTGGTATCGAGGGAGTTGC 57.603 50.000 0.00 0.00 0.00 4.17
5474 5852 9.504708 TCTTTTGAACACGTCCCTAATATTTTA 57.495 29.630 0.00 0.00 0.00 1.52
5475 5853 8.398878 TCTTTTGAACACGTCCCTAATATTTT 57.601 30.769 0.00 0.00 0.00 1.82
5476 5854 7.989416 TCTTTTGAACACGTCCCTAATATTT 57.011 32.000 0.00 0.00 0.00 1.40
5477 5855 7.989416 TTCTTTTGAACACGTCCCTAATATT 57.011 32.000 0.00 0.00 32.77 1.28
5478 5856 7.989416 TTTCTTTTGAACACGTCCCTAATAT 57.011 32.000 0.00 0.00 38.30 1.28
5479 5857 7.804843 TTTTCTTTTGAACACGTCCCTAATA 57.195 32.000 0.00 0.00 38.30 0.98
5480 5858 6.702716 TTTTCTTTTGAACACGTCCCTAAT 57.297 33.333 0.00 0.00 38.30 1.73
5481 5859 6.512342 TTTTTCTTTTGAACACGTCCCTAA 57.488 33.333 0.00 0.00 38.30 2.69
5504 5882 5.828328 CGGCTCTCCTTTCCCTAATATTTTT 59.172 40.000 0.00 0.00 0.00 1.94
5507 5885 3.974642 ACGGCTCTCCTTTCCCTAATATT 59.025 43.478 0.00 0.00 0.00 1.28
5509 5887 3.042059 ACGGCTCTCCTTTCCCTAATA 57.958 47.619 0.00 0.00 0.00 0.98
5511 5889 1.278127 CAACGGCTCTCCTTTCCCTAA 59.722 52.381 0.00 0.00 0.00 2.69
5522 5900 2.293318 TGGCATCTCCAACGGCTCT 61.293 57.895 0.00 0.00 43.21 4.09
5531 5909 4.363991 AGATGGAAGTTATGGCATCTCC 57.636 45.455 1.65 7.05 0.00 3.71
5532 5910 7.807977 TTAAAGATGGAAGTTATGGCATCTC 57.192 36.000 1.65 0.00 0.00 2.75
5533 5911 9.289782 GTATTAAAGATGGAAGTTATGGCATCT 57.710 33.333 1.65 0.00 0.00 2.90
5534 5912 8.230486 CGTATTAAAGATGGAAGTTATGGCATC 58.770 37.037 1.65 0.00 0.00 3.91
5536 5914 6.485313 CCGTATTAAAGATGGAAGTTATGGCA 59.515 38.462 0.00 0.00 0.00 4.92
5537 5915 6.708949 TCCGTATTAAAGATGGAAGTTATGGC 59.291 38.462 0.27 0.00 0.00 4.40
5538 5916 8.721478 CATCCGTATTAAAGATGGAAGTTATGG 58.279 37.037 5.93 0.00 35.61 2.74
5539 5917 8.230486 GCATCCGTATTAAAGATGGAAGTTATG 58.770 37.037 5.93 2.13 38.25 1.90
5540 5918 7.390718 GGCATCCGTATTAAAGATGGAAGTTAT 59.609 37.037 5.93 0.00 38.25 1.89
5541 5919 6.708949 GGCATCCGTATTAAAGATGGAAGTTA 59.291 38.462 5.93 0.00 38.25 2.24
5544 5922 5.063204 TGGCATCCGTATTAAAGATGGAAG 58.937 41.667 5.93 3.68 38.25 3.46
5545 5923 5.042463 TGGCATCCGTATTAAAGATGGAA 57.958 39.130 5.93 0.00 38.25 3.53
5546 5924 4.698201 TGGCATCCGTATTAAAGATGGA 57.302 40.909 4.59 4.59 38.25 3.41
5547 5925 4.396166 GGATGGCATCCGTATTAAAGATGG 59.604 45.833 29.43 2.68 40.13 3.51
5548 5926 5.551760 GGATGGCATCCGTATTAAAGATG 57.448 43.478 29.43 0.00 40.13 2.90
5561 5939 3.698040 ACAATCACTTCTTGGATGGCATC 59.302 43.478 19.23 19.23 0.00 3.91
5562 5940 3.698040 GACAATCACTTCTTGGATGGCAT 59.302 43.478 0.00 0.00 0.00 4.40
5563 5941 3.084039 GACAATCACTTCTTGGATGGCA 58.916 45.455 0.00 0.00 0.00 4.92
5564 5942 2.424956 GGACAATCACTTCTTGGATGGC 59.575 50.000 0.00 0.00 0.00 4.40
5565 5943 3.689347 TGGACAATCACTTCTTGGATGG 58.311 45.455 0.00 0.00 0.00 3.51
5566 5944 5.909621 AATGGACAATCACTTCTTGGATG 57.090 39.130 0.00 0.00 0.00 3.51
5567 5945 8.599624 AATAAATGGACAATCACTTCTTGGAT 57.400 30.769 0.00 0.00 0.00 3.41
5568 5946 8.421249 AAATAAATGGACAATCACTTCTTGGA 57.579 30.769 0.00 0.00 0.00 3.53
5569 5947 9.143631 GAAAATAAATGGACAATCACTTCTTGG 57.856 33.333 0.00 0.00 0.00 3.61
5570 5948 9.695526 TGAAAATAAATGGACAATCACTTCTTG 57.304 29.630 0.00 0.00 0.00 3.02
5571 5949 9.696917 GTGAAAATAAATGGACAATCACTTCTT 57.303 29.630 0.00 0.00 34.58 2.52
5572 5950 9.082313 AGTGAAAATAAATGGACAATCACTTCT 57.918 29.630 0.00 0.00 42.47 2.85
5575 5953 8.462016 GCTAGTGAAAATAAATGGACAATCACT 58.538 33.333 9.67 9.67 45.72 3.41
5576 5954 8.243426 TGCTAGTGAAAATAAATGGACAATCAC 58.757 33.333 0.00 0.00 36.95 3.06
5577 5955 8.347004 TGCTAGTGAAAATAAATGGACAATCA 57.653 30.769 0.00 0.00 0.00 2.57
5578 5956 9.638239 TTTGCTAGTGAAAATAAATGGACAATC 57.362 29.630 0.00 0.00 0.00 2.67
5579 5957 9.995003 TTTTGCTAGTGAAAATAAATGGACAAT 57.005 25.926 0.00 0.00 0.00 2.71
5580 5958 9.474920 CTTTTGCTAGTGAAAATAAATGGACAA 57.525 29.630 0.00 0.00 0.00 3.18
5581 5959 8.855110 TCTTTTGCTAGTGAAAATAAATGGACA 58.145 29.630 0.00 0.00 0.00 4.02
5582 5960 9.346725 CTCTTTTGCTAGTGAAAATAAATGGAC 57.653 33.333 0.00 0.00 0.00 4.02
5583 5961 9.077885 ACTCTTTTGCTAGTGAAAATAAATGGA 57.922 29.630 0.00 0.00 0.00 3.41
5584 5962 9.696917 AACTCTTTTGCTAGTGAAAATAAATGG 57.303 29.630 0.00 0.00 0.00 3.16
5588 5966 9.515020 CACAAACTCTTTTGCTAGTGAAAATAA 57.485 29.630 0.00 0.00 45.32 1.40
5589 5967 7.647715 GCACAAACTCTTTTGCTAGTGAAAATA 59.352 33.333 0.00 0.00 45.32 1.40
5590 5968 6.476706 GCACAAACTCTTTTGCTAGTGAAAAT 59.523 34.615 0.00 0.00 45.32 1.82
5591 5969 5.804979 GCACAAACTCTTTTGCTAGTGAAAA 59.195 36.000 0.00 0.00 45.32 2.29
5592 5970 5.339990 GCACAAACTCTTTTGCTAGTGAAA 58.660 37.500 0.00 0.00 45.32 2.69
5593 5971 4.495679 CGCACAAACTCTTTTGCTAGTGAA 60.496 41.667 0.00 0.00 45.32 3.18
5594 5972 3.002246 CGCACAAACTCTTTTGCTAGTGA 59.998 43.478 0.00 0.00 45.32 3.41
5595 5973 3.242739 ACGCACAAACTCTTTTGCTAGTG 60.243 43.478 0.00 0.00 45.32 2.74
5596 5974 2.943033 ACGCACAAACTCTTTTGCTAGT 59.057 40.909 0.00 0.00 45.32 2.57
5597 5975 3.609103 ACGCACAAACTCTTTTGCTAG 57.391 42.857 0.00 0.00 45.32 3.42
5598 5976 3.690422 CAACGCACAAACTCTTTTGCTA 58.310 40.909 0.00 0.00 45.32 3.49
5599 5977 2.529151 CAACGCACAAACTCTTTTGCT 58.471 42.857 0.00 0.00 45.32 3.91
5600 5978 1.006079 GCAACGCACAAACTCTTTTGC 60.006 47.619 0.00 0.00 45.32 3.68
5601 5979 2.257894 TGCAACGCACAAACTCTTTTG 58.742 42.857 0.00 0.00 46.61 2.44
5602 5980 2.645730 TGCAACGCACAAACTCTTTT 57.354 40.000 0.00 0.00 31.71 2.27
5603 5981 2.258755 GTTGCAACGCACAAACTCTTT 58.741 42.857 14.90 0.00 38.71 2.52
5604 5982 1.793714 CGTTGCAACGCACAAACTCTT 60.794 47.619 35.89 0.00 46.06 2.85
5605 5983 0.248054 CGTTGCAACGCACAAACTCT 60.248 50.000 35.89 0.00 46.06 3.24
5606 5984 2.194733 CGTTGCAACGCACAAACTC 58.805 52.632 35.89 2.57 46.06 3.01
5623 6001 7.795482 TTAACATGTGGTATATTTTCTCCCG 57.205 36.000 0.00 0.00 0.00 5.14
5642 6020 7.397892 TGGACATGTGTCTTTTCTTTTAACA 57.602 32.000 1.15 0.00 44.20 2.41
5645 6023 6.491394 CGTTGGACATGTGTCTTTTCTTTTA 58.509 36.000 1.15 0.00 44.20 1.52
5646 6024 5.339990 CGTTGGACATGTGTCTTTTCTTTT 58.660 37.500 1.15 0.00 44.20 2.27
5647 6025 4.733523 GCGTTGGACATGTGTCTTTTCTTT 60.734 41.667 1.15 0.00 44.20 2.52
5650 6028 2.604614 GGCGTTGGACATGTGTCTTTTC 60.605 50.000 1.15 0.00 44.20 2.29
5656 6034 2.668212 CCGGCGTTGGACATGTGT 60.668 61.111 1.15 0.00 0.00 3.72
5668 6046 3.269347 CGTATTTGAGGGCCGGCG 61.269 66.667 22.54 0.00 0.00 6.46
5710 6097 0.322906 TACCGCATTGGATGGCACAA 60.323 50.000 0.00 0.00 42.30 3.33
5719 6106 5.146460 CGAATTGATACATTACCGCATTGG 58.854 41.667 0.00 0.00 46.41 3.16
5723 6110 3.870723 GCGAATTGATACATTACCGCA 57.129 42.857 0.00 0.00 40.88 5.69
5758 6145 2.954611 GTTTGCGGGAGGAAGTGC 59.045 61.111 0.00 0.00 42.50 4.40
5811 6198 1.066286 AGAGTGATCAGAAGCTGGCAC 60.066 52.381 0.00 10.96 37.41 5.01
5812 6199 1.206610 GAGAGTGATCAGAAGCTGGCA 59.793 52.381 0.00 0.00 31.51 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.