Multiple sequence alignment - TraesCS2D01G227400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G227400 chr2D 100.000 3145 0 0 1 3145 196132594 196129450 0.000000e+00 5808.0
1 TraesCS2D01G227400 chr2D 85.031 481 68 4 1592 2070 195422784 195422306 1.530000e-133 486.0
2 TraesCS2D01G227400 chr2D 83.299 485 74 4 1589 2072 195995610 195996088 1.200000e-119 440.0
3 TraesCS2D01G227400 chr2D 88.350 309 34 2 2274 2582 196002533 196002839 1.600000e-98 370.0
4 TraesCS2D01G227400 chr2D 87.580 314 37 2 2281 2593 196223869 196223557 2.680000e-96 363.0
5 TraesCS2D01G227400 chr2D 87.077 325 34 3 2274 2591 195422212 195421889 9.650000e-96 361.0
6 TraesCS2D01G227400 chr2D 100.000 153 0 0 3503 3655 196129092 196128940 2.150000e-72 283.0
7 TraesCS2D01G227400 chr2D 82.317 164 27 1 183 344 647765018 647764855 1.370000e-29 141.0
8 TraesCS2D01G227400 chr2D 75.325 308 61 13 1170 1474 195995161 195995456 2.290000e-27 134.0
9 TraesCS2D01G227400 chr2D 92.208 77 3 3 3503 3576 67559923 67559999 4.990000e-19 106.0
10 TraesCS2D01G227400 chr2D 91.379 58 1 3 3537 3590 429087763 429087706 3.910000e-10 76.8
11 TraesCS2D01G227400 chr2D 93.617 47 2 1 3530 3576 575775919 575775874 6.550000e-08 69.4
12 TraesCS2D01G227400 chr2D 100.000 28 0 0 3507 3534 359632511 359632484 7.000000e-03 52.8
13 TraesCS2D01G227400 chr2A 95.676 1434 42 10 775 2204 211695978 211694561 0.000000e+00 2287.0
14 TraesCS2D01G227400 chr2A 91.531 980 35 9 2200 3145 211694175 211693210 0.000000e+00 1306.0
15 TraesCS2D01G227400 chr2A 85.447 481 66 4 1592 2070 210750699 210750221 7.050000e-137 497.0
16 TraesCS2D01G227400 chr2A 83.299 485 79 2 1589 2072 211460410 211460893 2.590000e-121 446.0
17 TraesCS2D01G227400 chr2A 84.555 382 51 7 2281 2657 211709532 211709154 4.460000e-99 372.0
18 TraesCS2D01G227400 chr2A 88.350 309 34 2 2274 2582 211483523 211483829 1.600000e-98 370.0
19 TraesCS2D01G227400 chr2A 92.029 138 10 1 3505 3641 211692667 211692530 3.720000e-45 193.0
20 TraesCS2D01G227400 chr2A 75.649 308 60 13 1170 1474 211459962 211460257 4.920000e-29 139.0
21 TraesCS2D01G227400 chr2A 86.869 99 11 1 1 97 93925110 93925012 3.860000e-20 110.0
22 TraesCS2D01G227400 chr7D 85.470 702 75 14 4 692 183228454 183227767 0.000000e+00 706.0
23 TraesCS2D01G227400 chr7D 81.481 162 26 3 183 341 17116207 17116367 2.960000e-26 130.0
24 TraesCS2D01G227400 chr7D 76.538 260 47 9 99 344 332736904 332736645 2.960000e-26 130.0
25 TraesCS2D01G227400 chr7D 81.818 88 8 6 3505 3584 123370185 123370272 2.360000e-07 67.6
26 TraesCS2D01G227400 chr5D 85.396 493 66 5 1582 2071 565786313 565785824 1.170000e-139 507.0
27 TraesCS2D01G227400 chr5D 83.212 137 22 1 1170 1306 565786769 565786634 1.380000e-24 124.0
28 TraesCS2D01G227400 chr5D 85.714 70 3 5 3513 3576 538713241 538713309 2.360000e-07 67.6
29 TraesCS2D01G227400 chrUn 82.095 592 88 13 1495 2071 67470298 67469710 1.180000e-134 490.0
30 TraesCS2D01G227400 chrUn 82.482 137 24 0 1170 1306 67470656 67470520 1.780000e-23 121.0
31 TraesCS2D01G227400 chr4A 82.034 590 92 10 1495 2071 607309552 607310140 1.180000e-134 490.0
32 TraesCS2D01G227400 chr4A 81.752 137 25 0 1170 1306 607309194 607309330 8.290000e-22 115.0
33 TraesCS2D01G227400 chr2B 88.365 318 37 0 2274 2591 251770513 251770196 2.060000e-102 383.0
34 TraesCS2D01G227400 chr2B 80.273 512 86 11 1593 2101 252977262 252976763 4.460000e-99 372.0
35 TraesCS2D01G227400 chr2B 87.898 314 36 2 2281 2593 252976584 252976272 5.770000e-98 368.0
36 TraesCS2D01G227400 chr7A 89.153 295 32 0 2287 2581 680628880 680628586 5.770000e-98 368.0
37 TraesCS2D01G227400 chr7A 83.439 157 23 2 191 344 709268716 709268560 3.800000e-30 143.0
38 TraesCS2D01G227400 chr7A 79.803 203 34 5 148 344 1290759 1290558 1.370000e-29 141.0
39 TraesCS2D01G227400 chr6D 91.270 252 20 2 354 603 292721104 292721355 3.490000e-90 342.0
40 TraesCS2D01G227400 chr6D 78.421 190 32 8 162 344 463074612 463074425 8.290000e-22 115.0
41 TraesCS2D01G227400 chr6D 95.652 46 1 1 3531 3576 50952581 50952537 5.060000e-09 73.1
42 TraesCS2D01G227400 chr6D 97.059 34 1 0 3505 3538 384391323 384391356 1.420000e-04 58.4
43 TraesCS2D01G227400 chr1D 86.364 132 14 4 561 688 137884807 137884938 1.370000e-29 141.0
44 TraesCS2D01G227400 chr1D 84.058 69 11 0 1 69 487360364 487360432 2.360000e-07 67.6
45 TraesCS2D01G227400 chr6B 78.571 196 33 8 156 344 706410268 706410075 1.780000e-23 121.0
46 TraesCS2D01G227400 chr6B 77.778 198 38 6 148 341 34129031 34129226 2.310000e-22 117.0
47 TraesCS2D01G227400 chr6B 78.061 196 34 8 156 344 706353282 706353089 8.290000e-22 115.0
48 TraesCS2D01G227400 chr6B 81.481 135 20 5 1402 1534 223561302 223561433 4.990000e-19 106.0
49 TraesCS2D01G227400 chr5B 82.482 137 24 0 1170 1306 707360004 707359868 1.780000e-23 121.0
50 TraesCS2D01G227400 chr3B 85.882 85 12 0 4 88 490896598 490896682 1.400000e-14 91.6
51 TraesCS2D01G227400 chr3B 92.308 39 3 0 639 677 21768669 21768707 5.100000e-04 56.5
52 TraesCS2D01G227400 chr3B 92.308 39 3 0 49 87 120010117 120010079 5.100000e-04 56.5
53 TraesCS2D01G227400 chr4D 97.727 44 0 1 3537 3579 233079404 233079447 1.410000e-09 75.0
54 TraesCS2D01G227400 chr6A 84.211 76 8 2 3505 3576 427196151 427196226 1.820000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G227400 chr2D 196128940 196132594 3654 True 3045.5 5808 100.000000 1 3655 2 chr2D.!!$R7 3654
1 TraesCS2D01G227400 chr2D 195421889 195422784 895 True 423.5 486 86.054000 1592 2591 2 chr2D.!!$R6 999
2 TraesCS2D01G227400 chr2D 195995161 195996088 927 False 287.0 440 79.312000 1170 2072 2 chr2D.!!$F3 902
3 TraesCS2D01G227400 chr2A 211692530 211695978 3448 True 1262.0 2287 93.078667 775 3641 3 chr2A.!!$R4 2866
4 TraesCS2D01G227400 chr2A 211459962 211460893 931 False 292.5 446 79.474000 1170 2072 2 chr2A.!!$F2 902
5 TraesCS2D01G227400 chr7D 183227767 183228454 687 True 706.0 706 85.470000 4 692 1 chr7D.!!$R1 688
6 TraesCS2D01G227400 chr5D 565785824 565786769 945 True 315.5 507 84.304000 1170 2071 2 chr5D.!!$R1 901
7 TraesCS2D01G227400 chrUn 67469710 67470656 946 True 305.5 490 82.288500 1170 2071 2 chrUn.!!$R1 901
8 TraesCS2D01G227400 chr4A 607309194 607310140 946 False 302.5 490 81.893000 1170 2071 2 chr4A.!!$F1 901
9 TraesCS2D01G227400 chr2B 252976272 252977262 990 True 370.0 372 84.085500 1593 2593 2 chr2B.!!$R2 1000

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
733 746 0.028110 GCTGCACGGCAAAGTATAGC 59.972 55.0 0.0 0.0 38.41 2.97 F
2136 2222 0.028242 GCGACGATGACTCTGACGAT 59.972 55.0 0.0 0.0 0.00 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2455 2963 0.246635 GAAGTAGTTCCGAGCCAGCA 59.753 55.0 0.0 0.0 0.00 4.41 R
3565 4293 2.500098 TGATAGTTCAAACTCCCTCCGG 59.500 50.0 0.0 0.0 40.37 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 1.371558 GGTGAAGAAGCAGGACGGT 59.628 57.895 0.00 0.00 0.00 4.83
89 90 2.765250 GAAGAAGCAGGACGGTCGCA 62.765 60.000 10.03 0.00 0.00 5.10
110 111 4.430765 GTCGACGGCCGGTGACAT 62.431 66.667 33.64 14.52 39.14 3.06
111 112 4.429212 TCGACGGCCGGTGACATG 62.429 66.667 31.76 10.48 39.14 3.21
119 126 0.451783 GCCGGTGACATGAACCAATC 59.548 55.000 18.29 6.48 37.57 2.67
126 133 5.586243 CGGTGACATGAACCAATCTTAGATT 59.414 40.000 18.29 0.99 37.57 2.40
128 135 6.599244 GGTGACATGAACCAATCTTAGATTGA 59.401 38.462 29.98 14.67 37.65 2.57
170 177 1.139455 ACGGAAGACAGAAAAACCCGA 59.861 47.619 0.00 0.00 38.86 5.14
173 180 2.031069 GGAAGACAGAAAAACCCGAAGC 60.031 50.000 0.00 0.00 0.00 3.86
207 217 0.331616 ATTCTTTAGGGCAGCCGGTT 59.668 50.000 5.00 0.00 0.00 4.44
223 233 0.861185 GGTTAACACGACCGGTTGAC 59.139 55.000 29.00 14.90 34.93 3.18
224 234 1.569708 GTTAACACGACCGGTTGACA 58.430 50.000 29.00 7.05 35.53 3.58
227 237 0.728542 AACACGACCGGTTGACAAAC 59.271 50.000 29.00 2.59 35.40 2.93
281 291 2.678580 TCGAGGCCGACCATCACA 60.679 61.111 0.00 0.00 40.30 3.58
282 292 2.264480 CGAGGCCGACCATCACAA 59.736 61.111 0.00 0.00 39.06 3.33
283 293 1.375396 CGAGGCCGACCATCACAAA 60.375 57.895 0.00 0.00 39.06 2.83
284 294 1.361668 CGAGGCCGACCATCACAAAG 61.362 60.000 0.00 0.00 39.06 2.77
328 338 1.067582 GGCGACTAGGGTTGGATCG 59.932 63.158 0.00 0.00 35.91 3.69
334 344 3.294214 GACTAGGGTTGGATCGGTTAGA 58.706 50.000 0.00 0.00 0.00 2.10
340 350 3.640029 GGGTTGGATCGGTTAGACTGATA 59.360 47.826 2.56 0.00 43.82 2.15
352 362 9.085645 TCGGTTAGACTGATAACAACCATATAT 57.914 33.333 3.99 0.00 38.86 0.86
396 406 8.164070 TCTATACAGGCAGTGATGATAAGTCTA 58.836 37.037 0.00 0.00 0.00 2.59
403 413 5.539979 CAGTGATGATAAGTCTAGCTGCAT 58.460 41.667 1.02 0.00 0.00 3.96
410 420 5.716703 TGATAAGTCTAGCTGCATGGCTATA 59.283 40.000 8.01 0.00 42.84 1.31
448 458 5.726397 ACTTTGGTACGCATGTGTTATCTA 58.274 37.500 18.51 4.25 0.00 1.98
449 459 6.346096 ACTTTGGTACGCATGTGTTATCTAT 58.654 36.000 18.51 0.00 0.00 1.98
503 513 2.093306 TGTAGACGCCATGGTCTTTG 57.907 50.000 14.67 1.13 44.65 2.77
541 551 4.127566 CAAAATTTGCCTCACCCCATAG 57.872 45.455 0.00 0.00 0.00 2.23
542 552 1.780503 AATTTGCCTCACCCCATAGC 58.219 50.000 0.00 0.00 0.00 2.97
543 553 0.929244 ATTTGCCTCACCCCATAGCT 59.071 50.000 0.00 0.00 0.00 3.32
544 554 0.034186 TTTGCCTCACCCCATAGCTG 60.034 55.000 0.00 0.00 0.00 4.24
545 555 0.913934 TTGCCTCACCCCATAGCTGA 60.914 55.000 0.00 0.00 0.00 4.26
546 556 1.147153 GCCTCACCCCATAGCTGAC 59.853 63.158 0.00 0.00 0.00 3.51
567 577 2.818169 GGGTGTGTGTCAGGCCAGA 61.818 63.158 5.01 0.00 0.00 3.86
580 591 2.742372 CCAGACGCCGGGTTCAAG 60.742 66.667 2.18 0.00 0.00 3.02
589 600 2.380410 CGGGTTCAAGGCGTCTTCG 61.380 63.158 0.00 0.00 40.37 3.79
601 613 1.021390 CGTCTTCGGGCAAGCAAGAT 61.021 55.000 0.00 0.00 31.26 2.40
608 620 4.883026 GCAAGCAAGATGCCACAG 57.117 55.556 0.00 0.00 46.52 3.66
644 656 4.217550 TGAAATGGGTCAGATCCGAAAAAC 59.782 41.667 0.00 0.00 0.00 2.43
645 657 3.721087 ATGGGTCAGATCCGAAAAACT 57.279 42.857 0.00 0.00 0.00 2.66
654 667 7.166970 GGTCAGATCCGAAAAACTTTTAAACAC 59.833 37.037 0.00 0.00 0.00 3.32
655 668 7.698970 GTCAGATCCGAAAAACTTTTAAACACA 59.301 33.333 0.00 0.00 0.00 3.72
657 670 7.167468 CAGATCCGAAAAACTTTTAAACACAGG 59.833 37.037 0.00 0.00 0.00 4.00
665 678 9.495572 AAAAACTTTTAAACACAGGTCAAATCA 57.504 25.926 0.00 0.00 0.00 2.57
668 681 6.701400 ACTTTTAAACACAGGTCAAATCATGC 59.299 34.615 0.00 0.00 0.00 4.06
689 702 5.537188 TGCTAAACTTTAGCAAATGGGTTG 58.463 37.500 26.93 0.00 46.29 3.77
690 703 5.303078 TGCTAAACTTTAGCAAATGGGTTGA 59.697 36.000 26.93 6.34 46.29 3.18
693 706 7.225734 GCTAAACTTTAGCAAATGGGTTGAAAA 59.774 33.333 23.22 0.00 39.87 2.29
694 707 7.929941 AAACTTTAGCAAATGGGTTGAAAAA 57.070 28.000 0.00 0.00 39.87 1.94
695 708 7.552458 AACTTTAGCAAATGGGTTGAAAAAG 57.448 32.000 9.91 9.91 41.55 2.27
696 709 6.649155 ACTTTAGCAAATGGGTTGAAAAAGT 58.351 32.000 10.76 10.76 42.67 2.66
697 710 6.761242 ACTTTAGCAAATGGGTTGAAAAAGTC 59.239 34.615 10.76 0.00 43.27 3.01
698 711 4.071961 AGCAAATGGGTTGAAAAAGTCC 57.928 40.909 0.00 0.00 39.87 3.85
699 712 3.138304 GCAAATGGGTTGAAAAAGTCCC 58.862 45.455 0.00 0.00 39.87 4.46
700 713 3.738982 CAAATGGGTTGAAAAAGTCCCC 58.261 45.455 0.00 0.00 39.87 4.81
701 714 3.344535 AATGGGTTGAAAAAGTCCCCT 57.655 42.857 0.00 0.00 39.20 4.79
702 715 2.080654 TGGGTTGAAAAAGTCCCCTG 57.919 50.000 0.00 0.00 39.20 4.45
703 716 0.679505 GGGTTGAAAAAGTCCCCTGC 59.320 55.000 0.00 0.00 34.32 4.85
704 717 1.704641 GGTTGAAAAAGTCCCCTGCT 58.295 50.000 0.00 0.00 0.00 4.24
705 718 1.341209 GGTTGAAAAAGTCCCCTGCTG 59.659 52.381 0.00 0.00 0.00 4.41
706 719 1.039856 TTGAAAAAGTCCCCTGCTGC 58.960 50.000 0.00 0.00 0.00 5.25
707 720 0.827507 TGAAAAAGTCCCCTGCTGCC 60.828 55.000 0.00 0.00 0.00 4.85
708 721 0.827507 GAAAAAGTCCCCTGCTGCCA 60.828 55.000 0.00 0.00 0.00 4.92
709 722 1.115326 AAAAAGTCCCCTGCTGCCAC 61.115 55.000 0.00 0.00 0.00 5.01
710 723 2.011617 AAAAGTCCCCTGCTGCCACT 62.012 55.000 0.00 0.00 0.00 4.00
711 724 2.703675 AAAGTCCCCTGCTGCCACTG 62.704 60.000 0.00 0.00 0.00 3.66
720 733 4.039357 CTGCCACTGCTGCTGCAC 62.039 66.667 14.93 5.58 45.31 4.57
729 742 3.654201 CTGCTGCACGGCAAAGTA 58.346 55.556 5.53 0.00 41.94 2.24
730 743 2.174334 CTGCTGCACGGCAAAGTAT 58.826 52.632 5.53 0.00 41.94 2.12
731 744 1.368641 CTGCTGCACGGCAAAGTATA 58.631 50.000 5.53 0.00 41.94 1.47
732 745 1.328680 CTGCTGCACGGCAAAGTATAG 59.671 52.381 5.53 0.00 41.94 1.31
733 746 0.028110 GCTGCACGGCAAAGTATAGC 59.972 55.000 0.00 0.00 38.41 2.97
734 747 1.656652 CTGCACGGCAAAGTATAGCT 58.343 50.000 0.00 0.00 38.41 3.32
735 748 1.594862 CTGCACGGCAAAGTATAGCTC 59.405 52.381 0.00 0.00 38.41 4.09
736 749 0.938008 GCACGGCAAAGTATAGCTCC 59.062 55.000 0.00 0.00 0.00 4.70
737 750 1.742411 GCACGGCAAAGTATAGCTCCA 60.742 52.381 0.00 0.00 0.00 3.86
738 751 1.933853 CACGGCAAAGTATAGCTCCAC 59.066 52.381 0.00 0.00 0.00 4.02
739 752 1.553248 ACGGCAAAGTATAGCTCCACA 59.447 47.619 0.00 0.00 0.00 4.17
740 753 2.205074 CGGCAAAGTATAGCTCCACAG 58.795 52.381 0.00 0.00 0.00 3.66
741 754 2.565841 GGCAAAGTATAGCTCCACAGG 58.434 52.381 0.00 0.00 0.00 4.00
742 755 1.943340 GCAAAGTATAGCTCCACAGGC 59.057 52.381 0.00 0.00 0.00 4.85
743 756 2.565841 CAAAGTATAGCTCCACAGGCC 58.434 52.381 0.00 0.00 0.00 5.19
744 757 2.171448 CAAAGTATAGCTCCACAGGCCT 59.829 50.000 0.00 0.00 0.00 5.19
745 758 1.710816 AGTATAGCTCCACAGGCCTC 58.289 55.000 0.00 0.00 0.00 4.70
746 759 1.062886 AGTATAGCTCCACAGGCCTCA 60.063 52.381 0.00 0.00 0.00 3.86
747 760 1.069358 GTATAGCTCCACAGGCCTCAC 59.931 57.143 0.00 0.00 0.00 3.51
748 761 1.680522 ATAGCTCCACAGGCCTCACG 61.681 60.000 0.00 0.00 0.00 4.35
749 762 4.767255 GCTCCACAGGCCTCACGG 62.767 72.222 0.00 3.26 0.00 4.94
759 772 3.275088 CCTCACGGCTCGTACACT 58.725 61.111 0.00 0.00 38.32 3.55
760 773 1.154016 CCTCACGGCTCGTACACTG 60.154 63.158 0.00 0.00 38.32 3.66
761 774 1.801913 CTCACGGCTCGTACACTGC 60.802 63.158 0.00 0.00 38.32 4.40
762 775 2.049526 CACGGCTCGTACACTGCA 60.050 61.111 0.00 0.00 38.32 4.41
763 776 2.088763 CACGGCTCGTACACTGCAG 61.089 63.158 13.48 13.48 38.32 4.41
764 777 3.181967 CGGCTCGTACACTGCAGC 61.182 66.667 15.27 0.00 0.00 5.25
765 778 2.048222 GGCTCGTACACTGCAGCA 60.048 61.111 15.27 0.00 33.22 4.41
766 779 1.667830 GGCTCGTACACTGCAGCAA 60.668 57.895 15.27 0.00 33.22 3.91
767 780 1.227999 GGCTCGTACACTGCAGCAAA 61.228 55.000 15.27 0.00 33.22 3.68
768 781 0.164647 GCTCGTACACTGCAGCAAAG 59.835 55.000 15.27 3.95 0.00 2.77
769 782 0.792640 CTCGTACACTGCAGCAAAGG 59.207 55.000 15.27 4.90 0.00 3.11
770 783 1.207593 CGTACACTGCAGCAAAGGC 59.792 57.895 15.27 0.00 41.61 4.35
832 845 0.102481 CCATGCATGCTTTCCAGAGC 59.898 55.000 21.69 0.00 43.00 4.09
848 861 0.177836 GAGCTCCTCCTGCTTTCCTC 59.822 60.000 0.87 0.00 41.30 3.71
855 868 2.125753 CTGCTTTCCTCGCGCTCT 60.126 61.111 5.56 0.00 0.00 4.09
878 891 0.110486 ACGAGGCCAATCACCAAACT 59.890 50.000 5.01 0.00 0.00 2.66
935 948 4.258543 TCGAATCGCTTCCCATTTTTAGT 58.741 39.130 0.00 0.00 0.00 2.24
937 950 4.495844 CGAATCGCTTCCCATTTTTAGTCC 60.496 45.833 0.00 0.00 0.00 3.85
938 951 3.426787 TCGCTTCCCATTTTTAGTCCA 57.573 42.857 0.00 0.00 0.00 4.02
939 952 3.757270 TCGCTTCCCATTTTTAGTCCAA 58.243 40.909 0.00 0.00 0.00 3.53
940 953 4.145807 TCGCTTCCCATTTTTAGTCCAAA 58.854 39.130 0.00 0.00 0.00 3.28
946 959 4.039852 TCCCATTTTTAGTCCAAAACCTGC 59.960 41.667 0.00 0.00 35.84 4.85
981 994 0.317436 CTTGTTTTTACTGCCGCGCA 60.317 50.000 8.75 1.04 36.92 6.09
983 996 2.072654 GTTTTTACTGCCGCGCACG 61.073 57.895 8.75 0.00 33.79 5.34
1034 1047 2.653115 CAGTGAGCGAGCTGTGGA 59.347 61.111 0.84 0.00 0.00 4.02
1045 1058 4.811557 AGCGAGCTGTGGAGATAAAATTAC 59.188 41.667 0.00 0.00 0.00 1.89
1046 1059 4.024809 GCGAGCTGTGGAGATAAAATTACC 60.025 45.833 0.00 0.00 0.00 2.85
1048 1061 5.463724 CGAGCTGTGGAGATAAAATTACCTC 59.536 44.000 0.00 0.00 0.00 3.85
1049 1062 6.567602 AGCTGTGGAGATAAAATTACCTCT 57.432 37.500 0.00 0.00 0.00 3.69
1051 1064 5.463724 GCTGTGGAGATAAAATTACCTCTCG 59.536 44.000 0.00 0.00 35.95 4.04
1052 1065 5.914033 TGTGGAGATAAAATTACCTCTCGG 58.086 41.667 0.00 0.00 35.95 4.63
1053 1066 4.750598 GTGGAGATAAAATTACCTCTCGGC 59.249 45.833 0.00 0.00 35.95 5.54
1054 1067 4.407621 TGGAGATAAAATTACCTCTCGGCA 59.592 41.667 0.00 0.00 35.95 5.69
1084 1098 2.279851 AAGCTACACGCGCACACA 60.280 55.556 5.73 0.00 45.59 3.72
1085 1099 2.480426 GAAGCTACACGCGCACACAC 62.480 60.000 5.73 0.00 45.59 3.82
1101 1115 0.603569 ACACTTCCTACACTGCCTCG 59.396 55.000 0.00 0.00 0.00 4.63
1389 1418 0.109597 CCATCAACTGCGCCAACTTC 60.110 55.000 4.18 0.00 0.00 3.01
1715 1783 4.559862 AGATCTTCATGAACGAGGGTTT 57.440 40.909 3.38 0.00 36.24 3.27
2136 2222 0.028242 GCGACGATGACTCTGACGAT 59.972 55.000 0.00 0.00 0.00 3.73
2162 2248 2.222729 CGAACAAGGTACGTTGCATAGC 60.223 50.000 24.33 10.82 0.00 2.97
2163 2249 2.465860 ACAAGGTACGTTGCATAGCA 57.534 45.000 24.33 0.00 36.47 3.49
2164 2250 2.985896 ACAAGGTACGTTGCATAGCAT 58.014 42.857 24.33 4.20 38.76 3.79
2165 2251 4.131649 ACAAGGTACGTTGCATAGCATA 57.868 40.909 24.33 0.00 38.76 3.14
2172 2258 2.936498 ACGTTGCATAGCATAGGAACAC 59.064 45.455 0.00 0.00 38.76 3.32
2175 2261 4.494690 CGTTGCATAGCATAGGAACACAAG 60.495 45.833 0.00 0.00 38.76 3.16
2178 2264 5.252547 TGCATAGCATAGGAACACAAGAAA 58.747 37.500 0.00 0.00 31.71 2.52
2204 2290 4.452114 TCGATCTTTGATTGGTGAACACAG 59.548 41.667 7.25 0.00 0.00 3.66
2231 2710 8.535335 ACACACACATTAGTATCTTCTTCTGAT 58.465 33.333 0.00 0.00 0.00 2.90
2250 2729 5.011431 TCTGATGAGTGTCTGAACATTCTGT 59.989 40.000 3.30 0.00 41.40 3.41
2455 2963 3.036429 GCTGGGAGGCGTTCAGGAT 62.036 63.158 11.02 0.00 0.00 3.24
2462 2970 2.437359 GCGTTCAGGATGCTGGCT 60.437 61.111 14.84 0.00 37.30 4.75
2616 3130 3.067833 GGGCTAGTTGAGTTTCTCACAC 58.932 50.000 0.00 2.54 40.46 3.82
2633 3147 4.751431 CCCAAGAAGCAGGGGAAG 57.249 61.111 0.00 0.00 45.08 3.46
2879 3417 5.401531 AGTAGCGAACTGATTTGGACTTA 57.598 39.130 0.00 0.00 36.93 2.24
2883 3421 5.790593 AGCGAACTGATTTGGACTTAAGTA 58.209 37.500 8.42 0.00 0.00 2.24
2923 3461 9.944663 GAATGAAATGCGTTATTAGTCCATTAA 57.055 29.630 0.00 0.00 0.00 1.40
2934 3472 6.759497 ATTAGTCCATTAACTCAAAGTGGC 57.241 37.500 0.00 0.00 0.00 5.01
2939 3477 3.194116 CCATTAACTCAAAGTGGCTGCAT 59.806 43.478 0.50 0.00 0.00 3.96
2943 3481 3.981071 ACTCAAAGTGGCTGCATACTA 57.019 42.857 0.50 0.00 0.00 1.82
2944 3482 3.600388 ACTCAAAGTGGCTGCATACTAC 58.400 45.455 0.50 0.00 0.00 2.73
2946 3484 4.002982 CTCAAAGTGGCTGCATACTACAA 58.997 43.478 0.50 0.00 0.00 2.41
2947 3485 4.393834 TCAAAGTGGCTGCATACTACAAA 58.606 39.130 0.50 0.00 0.00 2.83
2953 3496 4.455877 GTGGCTGCATACTACAAAAACTCT 59.544 41.667 0.50 0.00 0.00 3.24
3004 3547 8.594881 ACTCGTTCATTTGATCATATAAGACC 57.405 34.615 0.00 0.00 0.00 3.85
3107 3651 6.349528 GCCGTGTATACAAAAATAAGGGTTGT 60.350 38.462 7.25 0.00 38.88 3.32
3116 3660 1.194218 ATAAGGGTTGTGCAATGCCC 58.806 50.000 1.53 11.55 41.36 5.36
3565 4293 5.343249 TCTAATACGCGGAGTAAAAAGGAC 58.657 41.667 12.47 0.00 39.04 3.85
3568 4296 1.356527 CGCGGAGTAAAAAGGACCGG 61.357 60.000 0.00 0.00 43.15 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.090219 GCGACAGGCGACCCCTTAT 62.090 63.158 0.00 0.00 43.06 1.73
66 67 1.738099 CCGTCCTGCTTCTTCACCG 60.738 63.158 0.00 0.00 0.00 4.94
100 101 0.451783 GATTGGTTCATGTCACCGGC 59.548 55.000 0.00 0.00 37.07 6.13
102 103 4.503910 TCTAAGATTGGTTCATGTCACCG 58.496 43.478 10.92 0.00 37.07 4.94
104 105 7.615582 TCAATCTAAGATTGGTTCATGTCAC 57.384 36.000 0.00 0.00 0.00 3.67
105 106 8.634335 TTTCAATCTAAGATTGGTTCATGTCA 57.366 30.769 0.00 0.00 0.00 3.58
107 108 9.696917 GTTTTTCAATCTAAGATTGGTTCATGT 57.303 29.630 0.00 0.00 0.00 3.21
108 109 9.143631 GGTTTTTCAATCTAAGATTGGTTCATG 57.856 33.333 0.00 0.00 0.00 3.07
109 110 8.869109 TGGTTTTTCAATCTAAGATTGGTTCAT 58.131 29.630 0.00 0.00 0.00 2.57
110 111 8.243961 TGGTTTTTCAATCTAAGATTGGTTCA 57.756 30.769 0.00 0.00 0.00 3.18
111 112 9.541143 TTTGGTTTTTCAATCTAAGATTGGTTC 57.459 29.630 0.00 0.00 0.00 3.62
126 133 4.623002 GGCGGTATCTTTTTGGTTTTTCA 58.377 39.130 0.00 0.00 0.00 2.69
128 135 3.318557 TCGGCGGTATCTTTTTGGTTTTT 59.681 39.130 7.21 0.00 0.00 1.94
189 196 0.985760 TAACCGGCTGCCCTAAAGAA 59.014 50.000 14.12 0.00 0.00 2.52
207 217 1.932511 GTTTGTCAACCGGTCGTGTTA 59.067 47.619 8.04 0.00 0.00 2.41
254 264 4.148825 GGCCTCGATGACTGCCGT 62.149 66.667 0.00 0.00 33.59 5.68
277 287 2.279584 TTCGCGTCGCCTTTGTGA 60.280 55.556 12.44 0.00 0.00 3.58
279 289 3.712881 GCTTCGCGTCGCCTTTGT 61.713 61.111 12.44 0.00 0.00 2.83
308 318 1.673808 GATCCAACCCTAGTCGCCGT 61.674 60.000 0.00 0.00 0.00 5.68
312 322 0.822164 AACCGATCCAACCCTAGTCG 59.178 55.000 0.00 0.00 0.00 4.18
371 381 7.225784 AGACTTATCATCACTGCCTGTATAG 57.774 40.000 0.00 0.00 0.00 1.31
379 389 3.740321 GCAGCTAGACTTATCATCACTGC 59.260 47.826 0.00 0.00 40.89 4.40
385 395 3.327172 AGCCATGCAGCTAGACTTATCAT 59.673 43.478 0.00 0.00 42.70 2.45
410 420 1.342174 CAAAGTCCAGCAAGTTGGCAT 59.658 47.619 4.75 0.00 38.16 4.40
448 458 8.898761 TGTACGCATATGATTTTTAACCAGAAT 58.101 29.630 6.97 0.00 0.00 2.40
449 459 8.270080 TGTACGCATATGATTTTTAACCAGAA 57.730 30.769 6.97 0.00 0.00 3.02
473 483 5.335935 CATGGCGTCTACATAGCTACTATG 58.664 45.833 12.02 12.02 46.43 2.23
503 513 3.942439 GCCCCGACCCTAGATGCC 61.942 72.222 0.00 0.00 0.00 4.40
506 516 1.222567 ATTTTGCCCCGACCCTAGAT 58.777 50.000 0.00 0.00 0.00 1.98
534 544 1.694169 ACCCTGGTCAGCTATGGGG 60.694 63.158 11.60 9.64 42.00 4.96
536 546 0.107508 CACACCCTGGTCAGCTATGG 60.108 60.000 0.00 0.00 0.00 2.74
538 548 0.615331 CACACACCCTGGTCAGCTAT 59.385 55.000 0.00 0.00 0.00 2.97
539 549 0.762842 ACACACACCCTGGTCAGCTA 60.763 55.000 0.00 0.00 0.00 3.32
540 550 2.044806 GACACACACCCTGGTCAGCT 62.045 60.000 0.00 0.00 0.00 4.24
541 551 1.598130 GACACACACCCTGGTCAGC 60.598 63.158 0.00 0.00 0.00 4.26
542 552 1.829456 TGACACACACCCTGGTCAG 59.171 57.895 0.00 0.00 35.51 3.51
543 553 1.695114 CCTGACACACACCCTGGTCA 61.695 60.000 0.00 0.00 37.89 4.02
544 554 1.071471 CCTGACACACACCCTGGTC 59.929 63.158 0.00 0.00 0.00 4.02
545 555 3.120086 GCCTGACACACACCCTGGT 62.120 63.158 0.00 0.00 0.00 4.00
546 556 2.281761 GCCTGACACACACCCTGG 60.282 66.667 0.00 0.00 0.00 4.45
571 581 2.380410 CGAAGACGCCTTGAACCCG 61.380 63.158 0.00 0.00 31.62 5.28
577 588 2.668212 TTGCCCGAAGACGCCTTG 60.668 61.111 0.00 0.00 38.29 3.61
578 589 2.358737 CTTGCCCGAAGACGCCTT 60.359 61.111 0.00 0.00 38.29 4.35
606 618 3.495193 CATTTCAAGACGCCATCAACTG 58.505 45.455 0.00 0.00 0.00 3.16
608 620 2.415893 CCCATTTCAAGACGCCATCAAC 60.416 50.000 0.00 0.00 0.00 3.18
619 631 3.266510 TCGGATCTGACCCATTTCAAG 57.733 47.619 0.00 0.00 0.00 3.02
644 656 6.925165 AGCATGATTTGACCTGTGTTTAAAAG 59.075 34.615 0.00 0.00 0.00 2.27
645 657 6.815089 AGCATGATTTGACCTGTGTTTAAAA 58.185 32.000 0.00 0.00 0.00 1.52
654 667 6.749118 GCTAAAGTTTAGCATGATTTGACCTG 59.251 38.462 32.99 3.50 40.14 4.00
655 668 6.434028 TGCTAAAGTTTAGCATGATTTGACCT 59.566 34.615 35.53 0.00 44.65 3.85
668 681 8.655651 TTTTCAACCCATTTGCTAAAGTTTAG 57.344 30.769 16.87 16.87 34.88 1.85
689 702 0.827507 TGGCAGCAGGGGACTTTTTC 60.828 55.000 0.00 0.00 40.21 2.29
690 703 1.115326 GTGGCAGCAGGGGACTTTTT 61.115 55.000 0.00 0.00 40.21 1.94
693 706 2.856000 AGTGGCAGCAGGGGACTT 60.856 61.111 0.00 0.00 40.21 3.01
694 707 3.644606 CAGTGGCAGCAGGGGACT 61.645 66.667 0.00 0.00 46.44 3.85
711 724 1.926511 ATACTTTGCCGTGCAGCAGC 61.927 55.000 0.00 0.00 45.13 5.25
712 725 1.328680 CTATACTTTGCCGTGCAGCAG 59.671 52.381 0.00 3.10 45.13 4.24
713 726 1.368641 CTATACTTTGCCGTGCAGCA 58.631 50.000 0.00 0.00 40.61 4.41
714 727 0.028110 GCTATACTTTGCCGTGCAGC 59.972 55.000 0.00 0.00 40.61 5.25
715 728 1.594862 GAGCTATACTTTGCCGTGCAG 59.405 52.381 0.00 0.00 40.61 4.41
716 729 1.651987 GAGCTATACTTTGCCGTGCA 58.348 50.000 0.00 0.00 36.47 4.57
717 730 0.938008 GGAGCTATACTTTGCCGTGC 59.062 55.000 0.00 0.00 0.00 5.34
718 731 1.933853 GTGGAGCTATACTTTGCCGTG 59.066 52.381 0.00 0.00 0.00 4.94
719 732 1.553248 TGTGGAGCTATACTTTGCCGT 59.447 47.619 0.00 0.00 0.00 5.68
720 733 2.205074 CTGTGGAGCTATACTTTGCCG 58.795 52.381 0.00 0.00 0.00 5.69
721 734 2.565841 CCTGTGGAGCTATACTTTGCC 58.434 52.381 0.00 0.00 0.00 4.52
722 735 1.943340 GCCTGTGGAGCTATACTTTGC 59.057 52.381 0.00 0.00 0.00 3.68
723 736 2.171448 AGGCCTGTGGAGCTATACTTTG 59.829 50.000 3.11 0.00 0.00 2.77
724 737 2.436173 GAGGCCTGTGGAGCTATACTTT 59.564 50.000 12.00 0.00 0.00 2.66
725 738 2.043227 GAGGCCTGTGGAGCTATACTT 58.957 52.381 12.00 0.00 0.00 2.24
726 739 1.062886 TGAGGCCTGTGGAGCTATACT 60.063 52.381 12.00 0.00 0.00 2.12
727 740 1.069358 GTGAGGCCTGTGGAGCTATAC 59.931 57.143 12.00 0.00 0.00 1.47
728 741 1.414158 GTGAGGCCTGTGGAGCTATA 58.586 55.000 12.00 0.00 0.00 1.31
729 742 1.680522 CGTGAGGCCTGTGGAGCTAT 61.681 60.000 12.00 0.00 0.00 2.97
730 743 2.351244 CGTGAGGCCTGTGGAGCTA 61.351 63.158 12.00 0.00 0.00 3.32
731 744 3.699894 CGTGAGGCCTGTGGAGCT 61.700 66.667 12.00 0.00 0.00 4.09
743 756 1.801913 GCAGTGTACGAGCCGTGAG 60.802 63.158 10.01 0.00 41.39 3.51
744 757 2.257371 GCAGTGTACGAGCCGTGA 59.743 61.111 10.01 0.00 41.39 4.35
745 758 2.049526 TGCAGTGTACGAGCCGTG 60.050 61.111 10.01 0.00 41.39 4.94
746 759 2.258591 CTGCAGTGTACGAGCCGT 59.741 61.111 5.25 5.58 44.35 5.68
747 760 3.181967 GCTGCAGTGTACGAGCCG 61.182 66.667 16.64 0.00 0.00 5.52
748 761 1.227999 TTTGCTGCAGTGTACGAGCC 61.228 55.000 16.64 0.00 0.00 4.70
749 762 0.164647 CTTTGCTGCAGTGTACGAGC 59.835 55.000 16.64 0.00 0.00 5.03
750 763 0.792640 CCTTTGCTGCAGTGTACGAG 59.207 55.000 16.64 5.29 0.00 4.18
751 764 1.227999 GCCTTTGCTGCAGTGTACGA 61.228 55.000 16.64 0.00 33.53 3.43
752 765 1.207593 GCCTTTGCTGCAGTGTACG 59.792 57.895 16.64 1.72 33.53 3.67
832 845 1.153469 GCGAGGAAAGCAGGAGGAG 60.153 63.158 0.00 0.00 34.19 3.69
855 868 2.577059 GTGATTGGCCTCGTCGGA 59.423 61.111 3.32 0.00 33.16 4.55
878 891 2.121506 AGGCCTTCCAGGGTTCCA 60.122 61.111 0.00 0.00 35.37 3.53
935 948 2.114411 GGACGGGCAGGTTTTGGA 59.886 61.111 0.00 0.00 0.00 3.53
937 950 4.038080 GCGGACGGGCAGGTTTTG 62.038 66.667 0.00 0.00 0.00 2.44
955 968 2.557056 GGCAGTAAAAACAAGAGGGGTC 59.443 50.000 0.00 0.00 0.00 4.46
956 969 2.594131 GGCAGTAAAAACAAGAGGGGT 58.406 47.619 0.00 0.00 0.00 4.95
981 994 3.189702 CCATTGACCGTTGAATTTACCGT 59.810 43.478 0.00 0.00 0.00 4.83
983 996 5.158494 GTTCCATTGACCGTTGAATTTACC 58.842 41.667 0.00 0.00 0.00 2.85
1026 1039 6.567602 AGAGGTAATTTTATCTCCACAGCT 57.432 37.500 6.92 0.00 40.91 4.24
1046 1059 2.202770 CTGCTCTGCTGCCGAGAG 60.203 66.667 22.82 16.96 40.10 3.20
1048 1061 2.202770 CTCTGCTCTGCTGCCGAG 60.203 66.667 15.65 15.65 37.80 4.63
1049 1062 3.767806 CCTCTGCTCTGCTGCCGA 61.768 66.667 0.00 0.00 0.00 5.54
1051 1064 1.449956 CTTCCTCTGCTCTGCTGCC 60.450 63.158 0.00 0.00 0.00 4.85
1052 1065 2.107903 GCTTCCTCTGCTCTGCTGC 61.108 63.158 0.00 0.00 0.00 5.25
1053 1066 0.822811 TAGCTTCCTCTGCTCTGCTG 59.177 55.000 0.00 0.00 41.46 4.41
1054 1067 0.823460 GTAGCTTCCTCTGCTCTGCT 59.177 55.000 0.00 0.00 41.46 4.24
1084 1098 0.889306 GACGAGGCAGTGTAGGAAGT 59.111 55.000 0.00 0.00 0.00 3.01
1085 1099 1.178276 AGACGAGGCAGTGTAGGAAG 58.822 55.000 0.00 0.00 0.00 3.46
1101 1115 0.037790 ACGAGCAGCCAAGAGAAGAC 60.038 55.000 0.00 0.00 0.00 3.01
1159 1173 0.396811 GTGTCCACCAGCTTGTAGGT 59.603 55.000 0.00 0.00 39.10 3.08
1336 1350 2.027073 GCTTGACGACGATGGTGCA 61.027 57.895 0.00 0.00 0.00 4.57
1376 1405 1.166531 GGAGTTGAAGTTGGCGCAGT 61.167 55.000 10.83 0.00 0.00 4.40
1389 1418 1.879646 CGTCGTCGTAGAAGGAGTTG 58.120 55.000 0.00 0.00 39.69 3.16
1680 1748 2.854214 GATCTTGAGCGCGCAGTCG 61.854 63.158 35.10 18.42 39.07 4.18
2136 2222 1.862201 CAACGTACCTTGTTCGAGCAA 59.138 47.619 14.26 14.26 31.23 3.91
2162 2248 6.536582 AGATCGATGTTTCTTGTGTTCCTATG 59.463 38.462 0.54 0.00 0.00 2.23
2163 2249 6.644347 AGATCGATGTTTCTTGTGTTCCTAT 58.356 36.000 0.54 0.00 0.00 2.57
2164 2250 6.037786 AGATCGATGTTTCTTGTGTTCCTA 57.962 37.500 0.54 0.00 0.00 2.94
2165 2251 4.899502 AGATCGATGTTTCTTGTGTTCCT 58.100 39.130 0.54 0.00 0.00 3.36
2172 2258 6.525628 CACCAATCAAAGATCGATGTTTCTTG 59.474 38.462 16.91 19.72 32.65 3.02
2175 2261 6.182039 TCACCAATCAAAGATCGATGTTTC 57.818 37.500 16.91 0.00 0.00 2.78
2178 2264 5.003160 TGTTCACCAATCAAAGATCGATGT 58.997 37.500 0.54 0.00 0.00 3.06
2204 2290 8.029522 TCAGAAGAAGATACTAATGTGTGTGTC 58.970 37.037 0.00 0.00 0.00 3.67
2250 2729 3.438216 TTCCATGTTGGCATTCAGAGA 57.562 42.857 0.00 0.00 37.47 3.10
2455 2963 0.246635 GAAGTAGTTCCGAGCCAGCA 59.753 55.000 0.00 0.00 0.00 4.41
2600 3114 3.199946 TCTTGGGTGTGAGAAACTCAACT 59.800 43.478 2.98 0.00 42.46 3.16
2616 3130 0.405585 TTCTTCCCCTGCTTCTTGGG 59.594 55.000 0.00 0.00 42.98 4.12
2630 3144 5.413833 TCATGCCTTGACTGAATCTTTCTTC 59.586 40.000 0.00 0.00 0.00 2.87
2631 3145 5.319453 TCATGCCTTGACTGAATCTTTCTT 58.681 37.500 0.00 0.00 0.00 2.52
2632 3146 4.914983 TCATGCCTTGACTGAATCTTTCT 58.085 39.130 0.00 0.00 0.00 2.52
2633 3147 5.392811 CCTTCATGCCTTGACTGAATCTTTC 60.393 44.000 0.00 0.00 32.84 2.62
2674 3188 2.361230 GGCTGGTACTTGGTGCCC 60.361 66.667 2.63 0.00 37.51 5.36
2675 3189 1.675641 CTGGCTGGTACTTGGTGCC 60.676 63.158 0.00 0.00 43.49 5.01
2676 3190 1.073199 ACTGGCTGGTACTTGGTGC 59.927 57.895 0.00 0.00 0.00 5.01
2677 3191 0.396435 TCACTGGCTGGTACTTGGTG 59.604 55.000 0.00 0.00 0.00 4.17
2678 3192 1.136828 TTCACTGGCTGGTACTTGGT 58.863 50.000 0.00 0.00 0.00 3.67
2679 3193 2.154462 CTTTCACTGGCTGGTACTTGG 58.846 52.381 0.00 0.00 0.00 3.61
2680 3194 2.154462 CCTTTCACTGGCTGGTACTTG 58.846 52.381 0.00 0.00 0.00 3.16
2681 3195 2.054799 TCCTTTCACTGGCTGGTACTT 58.945 47.619 0.00 0.00 0.00 2.24
2682 3196 1.729586 TCCTTTCACTGGCTGGTACT 58.270 50.000 0.00 0.00 0.00 2.73
2683 3197 2.561478 TTCCTTTCACTGGCTGGTAC 57.439 50.000 0.00 0.00 0.00 3.34
2684 3198 3.486383 CTTTTCCTTTCACTGGCTGGTA 58.514 45.455 0.00 0.00 0.00 3.25
2685 3199 2.310538 CTTTTCCTTTCACTGGCTGGT 58.689 47.619 0.00 0.00 0.00 4.00
2686 3200 1.615392 CCTTTTCCTTTCACTGGCTGG 59.385 52.381 0.00 0.00 0.00 4.85
2776 3290 8.697292 AGGATAAAGATCACTAGGACTAACAAC 58.303 37.037 0.00 0.00 33.27 3.32
2790 3304 3.696051 GCTTGCCAACAGGATAAAGATCA 59.304 43.478 0.00 0.00 33.27 2.92
2879 3417 8.801882 TTTCATTCCGAAATAATCCACTACTT 57.198 30.769 0.00 0.00 38.72 2.24
2915 3453 3.366374 GCAGCCACTTTGAGTTAATGGAC 60.366 47.826 0.00 0.00 31.69 4.02
2923 3461 2.867109 AGTATGCAGCCACTTTGAGT 57.133 45.000 0.00 0.00 0.00 3.41
2934 3472 9.599322 CAGTTTTAGAGTTTTTGTAGTATGCAG 57.401 33.333 0.00 0.00 27.68 4.41
2986 3529 9.740239 CAGTTTTGGGTCTTATATGATCAAATG 57.260 33.333 0.00 10.46 0.00 2.32
3075 3619 5.690997 TTTTTGTATACACGGCAACATCA 57.309 34.783 4.68 0.00 0.00 3.07
3077 3621 7.254852 CCTTATTTTTGTATACACGGCAACAT 58.745 34.615 4.68 0.00 0.00 2.71
3078 3622 6.349445 CCCTTATTTTTGTATACACGGCAACA 60.349 38.462 4.68 0.00 0.00 3.33
3085 3629 7.371936 TGCACAACCCTTATTTTTGTATACAC 58.628 34.615 4.68 0.00 32.19 2.90
3107 3651 3.301554 CCAACGTGGGGCATTGCA 61.302 61.111 11.39 0.00 32.67 4.08
3530 4257 7.493320 ACTCCGCGTATTAGATTTGTGATAAAA 59.507 33.333 4.92 0.00 0.00 1.52
3534 4261 4.945246 ACTCCGCGTATTAGATTTGTGAT 58.055 39.130 4.92 0.00 0.00 3.06
3565 4293 2.500098 TGATAGTTCAAACTCCCTCCGG 59.500 50.000 0.00 0.00 40.37 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.