Multiple sequence alignment - TraesCS2D01G227300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G227300 chr2D 100.000 3041 0 0 1 3041 196000881 196003921 0.000000e+00 5616.0
1 TraesCS2D01G227300 chr2D 81.596 1391 192 36 657 2002 195995157 195996528 0.000000e+00 1092.0
2 TraesCS2D01G227300 chr2D 80.907 948 157 12 674 1601 195423241 195422298 0.000000e+00 726.0
3 TraesCS2D01G227300 chr2D 87.324 355 37 6 1661 2009 195422202 195421850 1.700000e-107 399.0
4 TraesCS2D01G227300 chr2D 97.143 35 0 1 58 92 603651493 603651460 1.180000e-04 58.4
5 TraesCS2D01G227300 chr2A 95.567 1692 49 11 531 2213 211482413 211484087 0.000000e+00 2686.0
6 TraesCS2D01G227300 chr2A 82.640 985 136 23 639 1604 211459934 211460902 0.000000e+00 839.0
7 TraesCS2D01G227300 chr2A 81.540 948 151 13 674 1601 210751156 210750213 0.000000e+00 760.0
8 TraesCS2D01G227300 chr2A 94.964 278 11 3 202 477 211480648 211480924 1.670000e-117 433.0
9 TraesCS2D01G227300 chr2A 88.169 355 34 6 1661 2009 210750117 210749765 1.690000e-112 416.0
10 TraesCS2D01G227300 chr2A 89.508 305 32 0 1664 1968 211694085 211693781 1.320000e-103 387.0
11 TraesCS2D01G227300 chr2A 85.876 354 50 0 1649 2002 211460995 211461348 7.960000e-101 377.0
12 TraesCS2D01G227300 chr2A 92.340 235 14 2 1983 2213 211484482 211484716 6.280000e-87 331.0
13 TraesCS2D01G227300 chr2A 88.350 206 18 4 2792 2993 211485087 211485290 3.030000e-60 243.0
14 TraesCS2D01G227300 chr2A 91.667 168 10 3 2046 2213 211485388 211485551 2.360000e-56 230.0
15 TraesCS2D01G227300 chr2A 93.939 66 4 0 1983 2048 211485291 211485356 1.930000e-17 100.0
16 TraesCS2D01G227300 chr2B 79.852 948 156 14 674 1601 251771531 251770599 0.000000e+00 660.0
17 TraesCS2D01G227300 chr2B 87.745 408 43 6 2216 2621 720628732 720629134 1.280000e-128 470.0
18 TraesCS2D01G227300 chr2B 88.921 343 36 2 1661 2003 251770503 251770163 3.630000e-114 422.0
19 TraesCS2D01G227300 chr5D 90.315 413 29 9 2212 2621 399625010 399624606 5.770000e-147 531.0
20 TraesCS2D01G227300 chr5D 86.510 341 46 0 1654 1994 565785722 565785382 2.860000e-100 375.0
21 TraesCS2D01G227300 chr1A 90.347 404 34 5 2221 2621 497759412 497759011 2.690000e-145 525.0
22 TraesCS2D01G227300 chrUn 89.398 415 30 7 2216 2621 390768108 390768517 7.520000e-141 510.0
23 TraesCS2D01G227300 chrUn 89.183 416 31 7 2216 2621 434310250 434309839 9.730000e-140 507.0
24 TraesCS2D01G227300 chrUn 86.217 341 47 0 1654 1994 67469593 67469253 1.330000e-98 370.0
25 TraesCS2D01G227300 chr6D 89.706 408 31 7 2216 2621 262290887 262290489 7.520000e-141 510.0
26 TraesCS2D01G227300 chr7B 89.409 406 35 6 2221 2621 172368939 172368537 3.500000e-139 505.0
27 TraesCS2D01G227300 chr7B 88.675 415 36 9 2212 2621 477974669 477975077 2.110000e-136 496.0
28 TraesCS2D01G227300 chr6B 86.441 413 46 9 2212 2621 63560822 63560417 7.740000e-121 444.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G227300 chr2D 196000881 196003921 3040 False 5616.0 5616 100.0000 1 3041 1 chr2D.!!$F2 3040
1 TraesCS2D01G227300 chr2D 195995157 195996528 1371 False 1092.0 1092 81.5960 657 2002 1 chr2D.!!$F1 1345
2 TraesCS2D01G227300 chr2D 195421850 195423241 1391 True 562.5 726 84.1155 674 2009 2 chr2D.!!$R2 1335
3 TraesCS2D01G227300 chr2A 211480648 211485551 4903 False 670.5 2686 92.8045 202 2993 6 chr2A.!!$F2 2791
4 TraesCS2D01G227300 chr2A 211459934 211461348 1414 False 608.0 839 84.2580 639 2002 2 chr2A.!!$F1 1363
5 TraesCS2D01G227300 chr2A 210749765 210751156 1391 True 588.0 760 84.8545 674 2009 2 chr2A.!!$R2 1335
6 TraesCS2D01G227300 chr2B 251770163 251771531 1368 True 541.0 660 84.3865 674 2003 2 chr2B.!!$R1 1329

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.178958 AGGCGAGATAGACGGGGATT 60.179 55.0 0.0 0.0 0.0 3.01 F
189 190 0.391263 AGACGGGGATTTCAGCGTTC 60.391 55.0 0.0 0.0 0.0 3.95 F
527 1972 0.624785 TAAAATACACGGGGGTGGGG 59.375 55.0 0.0 0.0 0.0 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1110 2580 0.591236 CGTCGAAGCTGAGCTCTAGC 60.591 60.000 22.79 22.79 38.25 3.42 R
1241 2711 1.275856 GGTGATTCATGCCTTGCCAAA 59.724 47.619 0.00 0.00 0.00 3.28 R
2454 3997 0.394762 GCATTGTGGAGGCCTCATCA 60.395 55.000 33.29 26.09 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.047511 AGAAGCATAGGCATATGGACTAAG 57.952 41.667 19.19 0.00 41.54 2.18
29 30 6.882610 CATAGGCATATGGACTAAGCAAAA 57.117 37.500 10.53 0.00 41.54 2.44
30 31 7.275888 CATAGGCATATGGACTAAGCAAAAA 57.724 36.000 10.53 0.00 41.54 1.94
31 32 5.841957 AGGCATATGGACTAAGCAAAAAG 57.158 39.130 4.56 0.00 27.39 2.27
32 33 5.509498 AGGCATATGGACTAAGCAAAAAGA 58.491 37.500 4.56 0.00 27.39 2.52
33 34 5.951747 AGGCATATGGACTAAGCAAAAAGAA 59.048 36.000 4.56 0.00 27.39 2.52
34 35 6.437162 AGGCATATGGACTAAGCAAAAAGAAA 59.563 34.615 4.56 0.00 27.39 2.52
35 36 7.039082 AGGCATATGGACTAAGCAAAAAGAAAA 60.039 33.333 4.56 0.00 27.39 2.29
36 37 7.602265 GGCATATGGACTAAGCAAAAAGAAAAA 59.398 33.333 4.56 0.00 0.00 1.94
61 62 3.974222 AAGCAAAGCTTCAGCCAAC 57.026 47.368 17.32 0.00 46.77 3.77
62 63 1.113788 AAGCAAAGCTTCAGCCAACA 58.886 45.000 17.32 0.00 46.77 3.33
63 64 0.672342 AGCAAAGCTTCAGCCAACAG 59.328 50.000 17.32 0.00 43.38 3.16
64 65 0.386838 GCAAAGCTTCAGCCAACAGT 59.613 50.000 11.64 0.00 43.38 3.55
65 66 1.202452 GCAAAGCTTCAGCCAACAGTT 60.202 47.619 11.64 0.00 43.38 3.16
66 67 2.739609 GCAAAGCTTCAGCCAACAGTTT 60.740 45.455 11.64 0.00 43.38 2.66
67 68 2.861935 CAAAGCTTCAGCCAACAGTTTG 59.138 45.455 0.00 0.00 43.38 2.93
81 82 6.822073 CAACAGTTTGGATGCATAATCATG 57.178 37.500 0.00 0.00 36.98 3.07
82 83 6.334989 CAACAGTTTGGATGCATAATCATGT 58.665 36.000 0.00 0.00 36.98 3.21
83 84 5.898174 ACAGTTTGGATGCATAATCATGTG 58.102 37.500 0.00 0.00 36.98 3.21
84 85 5.653330 ACAGTTTGGATGCATAATCATGTGA 59.347 36.000 0.00 0.00 36.98 3.58
85 86 6.322969 ACAGTTTGGATGCATAATCATGTGAT 59.677 34.615 0.00 0.00 36.98 3.06
86 87 6.640907 CAGTTTGGATGCATAATCATGTGATG 59.359 38.462 0.00 0.00 36.98 3.07
87 88 6.322969 AGTTTGGATGCATAATCATGTGATGT 59.677 34.615 0.00 0.00 36.98 3.06
88 89 5.699097 TGGATGCATAATCATGTGATGTG 57.301 39.130 0.00 1.09 36.98 3.21
89 90 4.022676 TGGATGCATAATCATGTGATGTGC 60.023 41.667 18.87 18.87 42.44 4.57
91 92 4.985538 TGCATAATCATGTGATGTGCAA 57.014 36.364 22.94 13.10 45.49 4.08
92 93 5.523438 TGCATAATCATGTGATGTGCAAT 57.477 34.783 22.94 2.25 45.49 3.56
93 94 5.908341 TGCATAATCATGTGATGTGCAATT 58.092 33.333 22.94 2.34 45.49 2.32
94 95 7.040473 TGCATAATCATGTGATGTGCAATTA 57.960 32.000 22.94 9.11 45.49 1.40
95 96 6.919115 TGCATAATCATGTGATGTGCAATTAC 59.081 34.615 22.94 0.00 45.49 1.89
96 97 6.919115 GCATAATCATGTGATGTGCAATTACA 59.081 34.615 19.95 8.24 42.06 2.41
97 98 7.597369 GCATAATCATGTGATGTGCAATTACAT 59.403 33.333 19.95 11.05 42.06 2.29
109 110 7.815398 TGTGCAATTACATCATTGTTCATTC 57.185 32.000 0.00 0.00 36.63 2.67
110 111 7.376615 TGTGCAATTACATCATTGTTCATTCA 58.623 30.769 0.00 0.00 36.63 2.57
111 112 7.328982 TGTGCAATTACATCATTGTTCATTCAC 59.671 33.333 0.00 0.00 36.63 3.18
112 113 6.812656 TGCAATTACATCATTGTTCATTCACC 59.187 34.615 0.00 0.00 36.63 4.02
113 114 6.256321 GCAATTACATCATTGTTCATTCACCC 59.744 38.462 0.00 0.00 36.63 4.61
114 115 7.321908 CAATTACATCATTGTTCATTCACCCA 58.678 34.615 0.00 0.00 37.28 4.51
115 116 6.907853 TTACATCATTGTTCATTCACCCAA 57.092 33.333 0.00 0.00 37.28 4.12
116 117 7.479352 TTACATCATTGTTCATTCACCCAAT 57.521 32.000 0.00 0.00 37.28 3.16
117 118 6.363167 ACATCATTGTTCATTCACCCAATT 57.637 33.333 0.00 0.00 29.55 2.32
118 119 6.400568 ACATCATTGTTCATTCACCCAATTC 58.599 36.000 0.00 0.00 29.55 2.17
119 120 6.014413 ACATCATTGTTCATTCACCCAATTCA 60.014 34.615 0.00 0.00 29.55 2.57
120 121 6.416631 TCATTGTTCATTCACCCAATTCAA 57.583 33.333 0.00 0.00 0.00 2.69
121 122 6.824553 TCATTGTTCATTCACCCAATTCAAA 58.175 32.000 0.00 0.00 0.00 2.69
122 123 7.278135 TCATTGTTCATTCACCCAATTCAAAA 58.722 30.769 0.00 0.00 0.00 2.44
123 124 7.441760 TCATTGTTCATTCACCCAATTCAAAAG 59.558 33.333 0.00 0.00 0.00 2.27
124 125 5.055812 TGTTCATTCACCCAATTCAAAAGC 58.944 37.500 0.00 0.00 0.00 3.51
125 126 4.270245 TCATTCACCCAATTCAAAAGCC 57.730 40.909 0.00 0.00 0.00 4.35
126 127 3.903090 TCATTCACCCAATTCAAAAGCCT 59.097 39.130 0.00 0.00 0.00 4.58
127 128 3.749665 TTCACCCAATTCAAAAGCCTG 57.250 42.857 0.00 0.00 0.00 4.85
128 129 2.956132 TCACCCAATTCAAAAGCCTGA 58.044 42.857 0.00 0.00 0.00 3.86
129 130 2.627699 TCACCCAATTCAAAAGCCTGAC 59.372 45.455 0.00 0.00 0.00 3.51
130 131 1.613437 ACCCAATTCAAAAGCCTGACG 59.387 47.619 0.00 0.00 0.00 4.35
131 132 1.613437 CCCAATTCAAAAGCCTGACGT 59.387 47.619 0.00 0.00 0.00 4.34
132 133 2.607771 CCCAATTCAAAAGCCTGACGTG 60.608 50.000 0.00 0.00 0.00 4.49
133 134 2.607771 CCAATTCAAAAGCCTGACGTGG 60.608 50.000 0.00 0.00 0.00 4.94
141 142 2.740055 CCTGACGTGGCACTGCTC 60.740 66.667 16.72 7.87 0.00 4.26
142 143 3.108289 CTGACGTGGCACTGCTCG 61.108 66.667 16.72 14.20 34.05 5.03
158 159 1.523095 GCTCGCCAGCTTTAGTATTCG 59.477 52.381 0.00 0.00 43.09 3.34
159 160 2.128035 CTCGCCAGCTTTAGTATTCGG 58.872 52.381 0.00 0.00 0.00 4.30
160 161 1.202486 TCGCCAGCTTTAGTATTCGGG 60.202 52.381 0.00 0.00 0.00 5.14
161 162 1.202486 CGCCAGCTTTAGTATTCGGGA 60.202 52.381 0.00 0.00 0.00 5.14
162 163 2.484889 GCCAGCTTTAGTATTCGGGAG 58.515 52.381 0.00 0.00 0.00 4.30
163 164 2.807108 GCCAGCTTTAGTATTCGGGAGG 60.807 54.545 0.00 0.00 0.00 4.30
164 165 2.484889 CAGCTTTAGTATTCGGGAGGC 58.515 52.381 0.00 0.00 0.00 4.70
165 166 1.068741 AGCTTTAGTATTCGGGAGGCG 59.931 52.381 0.00 0.00 0.00 5.52
166 167 1.068127 GCTTTAGTATTCGGGAGGCGA 59.932 52.381 0.00 0.00 0.00 5.54
167 168 2.862921 GCTTTAGTATTCGGGAGGCGAG 60.863 54.545 0.00 0.00 0.00 5.03
168 169 2.353357 TTAGTATTCGGGAGGCGAGA 57.647 50.000 0.00 0.00 0.00 4.04
169 170 2.581216 TAGTATTCGGGAGGCGAGAT 57.419 50.000 0.00 0.00 0.00 2.75
170 171 2.581216 AGTATTCGGGAGGCGAGATA 57.419 50.000 0.00 0.00 0.00 1.98
171 172 2.438411 AGTATTCGGGAGGCGAGATAG 58.562 52.381 0.00 0.00 0.00 2.08
172 173 2.040012 AGTATTCGGGAGGCGAGATAGA 59.960 50.000 0.00 0.00 0.00 1.98
173 174 1.249407 ATTCGGGAGGCGAGATAGAC 58.751 55.000 0.00 0.00 0.00 2.59
174 175 1.164662 TTCGGGAGGCGAGATAGACG 61.165 60.000 0.00 0.00 0.00 4.18
175 176 2.618219 CGGGAGGCGAGATAGACGG 61.618 68.421 0.00 0.00 0.00 4.79
176 177 2.269529 GGGAGGCGAGATAGACGGG 61.270 68.421 0.00 0.00 0.00 5.28
177 178 2.269529 GGAGGCGAGATAGACGGGG 61.270 68.421 0.00 0.00 0.00 5.73
178 179 1.228184 GAGGCGAGATAGACGGGGA 60.228 63.158 0.00 0.00 0.00 4.81
179 180 0.609681 GAGGCGAGATAGACGGGGAT 60.610 60.000 0.00 0.00 0.00 3.85
180 181 0.178958 AGGCGAGATAGACGGGGATT 60.179 55.000 0.00 0.00 0.00 3.01
181 182 0.680061 GGCGAGATAGACGGGGATTT 59.320 55.000 0.00 0.00 0.00 2.17
182 183 1.336980 GGCGAGATAGACGGGGATTTC 60.337 57.143 0.00 0.00 0.00 2.17
183 184 1.340248 GCGAGATAGACGGGGATTTCA 59.660 52.381 0.00 0.00 0.00 2.69
184 185 2.608261 GCGAGATAGACGGGGATTTCAG 60.608 54.545 0.00 0.00 0.00 3.02
185 186 2.608261 CGAGATAGACGGGGATTTCAGC 60.608 54.545 0.00 0.00 0.00 4.26
186 187 1.341531 AGATAGACGGGGATTTCAGCG 59.658 52.381 0.00 0.00 0.00 5.18
187 188 1.068741 GATAGACGGGGATTTCAGCGT 59.931 52.381 0.00 0.00 0.00 5.07
188 189 0.899720 TAGACGGGGATTTCAGCGTT 59.100 50.000 0.00 0.00 0.00 4.84
189 190 0.391263 AGACGGGGATTTCAGCGTTC 60.391 55.000 0.00 0.00 0.00 3.95
190 191 0.672401 GACGGGGATTTCAGCGTTCA 60.672 55.000 0.00 0.00 0.00 3.18
191 192 0.673644 ACGGGGATTTCAGCGTTCAG 60.674 55.000 0.00 0.00 0.00 3.02
192 193 1.369091 CGGGGATTTCAGCGTTCAGG 61.369 60.000 0.00 0.00 0.00 3.86
193 194 1.657751 GGGGATTTCAGCGTTCAGGC 61.658 60.000 0.00 0.00 0.00 4.85
194 195 0.678048 GGGATTTCAGCGTTCAGGCT 60.678 55.000 0.00 0.00 46.13 4.58
195 196 1.168714 GGATTTCAGCGTTCAGGCTT 58.831 50.000 0.00 0.00 42.53 4.35
196 197 2.356135 GGATTTCAGCGTTCAGGCTTA 58.644 47.619 0.00 0.00 42.53 3.09
197 198 2.747446 GGATTTCAGCGTTCAGGCTTAA 59.253 45.455 0.00 0.00 42.53 1.85
198 199 3.190535 GGATTTCAGCGTTCAGGCTTAAA 59.809 43.478 3.95 3.95 42.53 1.52
199 200 3.896648 TTTCAGCGTTCAGGCTTAAAG 57.103 42.857 0.00 0.00 42.53 1.85
200 201 2.543777 TCAGCGTTCAGGCTTAAAGT 57.456 45.000 0.00 0.00 42.53 2.66
201 202 2.143122 TCAGCGTTCAGGCTTAAAGTG 58.857 47.619 0.00 0.00 42.53 3.16
202 203 1.873591 CAGCGTTCAGGCTTAAAGTGT 59.126 47.619 0.00 0.00 42.53 3.55
203 204 3.064207 CAGCGTTCAGGCTTAAAGTGTA 58.936 45.455 0.00 0.00 42.53 2.90
204 205 3.684788 CAGCGTTCAGGCTTAAAGTGTAT 59.315 43.478 0.00 0.00 42.53 2.29
205 206 4.868171 CAGCGTTCAGGCTTAAAGTGTATA 59.132 41.667 0.00 0.00 42.53 1.47
206 207 5.350365 CAGCGTTCAGGCTTAAAGTGTATAA 59.650 40.000 0.00 0.00 42.53 0.98
207 208 5.935789 AGCGTTCAGGCTTAAAGTGTATAAA 59.064 36.000 0.00 0.00 41.39 1.40
208 209 6.598064 AGCGTTCAGGCTTAAAGTGTATAAAT 59.402 34.615 0.00 0.00 41.39 1.40
209 210 6.687105 GCGTTCAGGCTTAAAGTGTATAAATG 59.313 38.462 0.00 0.00 0.00 2.32
232 233 9.669887 AATGTATTTGGATGCATGTACATTTTT 57.330 25.926 21.45 9.64 38.76 1.94
390 393 6.093082 GTGTAAACCGGCATTGAGTAAATACT 59.907 38.462 0.00 0.00 39.71 2.12
427 430 1.961277 GGTCACACGCTTCACCCAG 60.961 63.158 0.00 0.00 0.00 4.45
484 1929 1.607801 CTGGTGGTCTGCTGATCCGA 61.608 60.000 0.93 0.00 0.00 4.55
508 1953 7.361031 CGACGATCTAACCTGCAATAGTACTAT 60.361 40.741 9.71 9.71 0.00 2.12
509 1954 8.859236 ACGATCTAACCTGCAATAGTACTATA 57.141 34.615 15.74 0.00 0.00 1.31
518 1963 9.472361 ACCTGCAATAGTACTATAAAATACACG 57.528 33.333 15.74 5.44 0.00 4.49
519 1964 8.922676 CCTGCAATAGTACTATAAAATACACGG 58.077 37.037 15.74 4.23 0.00 4.94
520 1965 8.821147 TGCAATAGTACTATAAAATACACGGG 57.179 34.615 15.74 0.00 0.00 5.28
521 1966 7.874016 TGCAATAGTACTATAAAATACACGGGG 59.126 37.037 15.74 0.00 0.00 5.73
522 1967 7.332678 GCAATAGTACTATAAAATACACGGGGG 59.667 40.741 15.74 0.00 0.00 5.40
523 1968 8.370182 CAATAGTACTATAAAATACACGGGGGT 58.630 37.037 15.74 0.00 0.00 4.95
524 1969 6.165700 AGTACTATAAAATACACGGGGGTG 57.834 41.667 0.00 0.00 0.00 4.61
525 1970 4.426736 ACTATAAAATACACGGGGGTGG 57.573 45.455 0.00 0.00 0.00 4.61
526 1971 2.740506 ATAAAATACACGGGGGTGGG 57.259 50.000 0.00 0.00 0.00 4.61
527 1972 0.624785 TAAAATACACGGGGGTGGGG 59.375 55.000 0.00 0.00 0.00 4.96
528 1973 2.157798 AAAATACACGGGGGTGGGGG 62.158 60.000 0.00 0.00 0.00 5.40
529 1974 3.895253 AATACACGGGGGTGGGGGT 62.895 63.158 0.00 0.00 0.00 4.95
554 1999 1.076044 GGGGGTGTATGCCAGCAAT 60.076 57.895 0.00 0.00 43.50 3.56
589 2034 3.904136 ACTGAAGCAAGAAACCAATCG 57.096 42.857 0.00 0.00 0.00 3.34
595 2040 2.814336 AGCAAGAAACCAATCGAGTTCC 59.186 45.455 0.00 0.00 0.00 3.62
599 2044 4.351874 AGAAACCAATCGAGTTCCTTGA 57.648 40.909 0.00 0.00 0.00 3.02
600 2045 4.911390 AGAAACCAATCGAGTTCCTTGAT 58.089 39.130 0.00 0.00 36.26 2.57
601 2046 5.316987 AGAAACCAATCGAGTTCCTTGATT 58.683 37.500 1.63 1.63 43.16 2.57
602 2047 5.412904 AGAAACCAATCGAGTTCCTTGATTC 59.587 40.000 4.14 0.00 41.19 2.52
603 2048 4.286297 ACCAATCGAGTTCCTTGATTCA 57.714 40.909 4.14 0.00 41.19 2.57
604 2049 4.003648 ACCAATCGAGTTCCTTGATTCAC 58.996 43.478 4.14 0.00 41.19 3.18
605 2050 3.375299 CCAATCGAGTTCCTTGATTCACC 59.625 47.826 4.14 0.00 41.19 4.02
606 2051 4.256920 CAATCGAGTTCCTTGATTCACCT 58.743 43.478 4.14 0.00 41.19 4.00
607 2052 3.319137 TCGAGTTCCTTGATTCACCTG 57.681 47.619 0.00 0.00 0.00 4.00
608 2053 1.734465 CGAGTTCCTTGATTCACCTGC 59.266 52.381 0.00 0.00 0.00 4.85
609 2054 2.783135 GAGTTCCTTGATTCACCTGCA 58.217 47.619 0.00 0.00 0.00 4.41
610 2055 2.746362 GAGTTCCTTGATTCACCTGCAG 59.254 50.000 6.78 6.78 0.00 4.41
611 2056 1.815003 GTTCCTTGATTCACCTGCAGG 59.185 52.381 31.60 31.60 42.17 4.85
612 2057 1.361204 TCCTTGATTCACCTGCAGGA 58.639 50.000 39.19 18.02 38.94 3.86
613 2058 1.280133 TCCTTGATTCACCTGCAGGAG 59.720 52.381 39.19 30.91 38.94 3.69
614 2059 1.280133 CCTTGATTCACCTGCAGGAGA 59.720 52.381 39.19 32.75 38.94 3.71
916 2373 0.706433 ACCTGGCCACCAAGATCAAT 59.294 50.000 0.00 0.00 30.80 2.57
925 2382 1.091771 CCAAGATCAATCCGCGCACT 61.092 55.000 8.75 0.00 0.00 4.40
1182 2652 1.300963 GCCCTTCATCAGCTCCACA 59.699 57.895 0.00 0.00 0.00 4.17
1241 2711 2.559668 TCTTCATGAACGACTACGGGTT 59.440 45.455 3.38 0.00 44.46 4.11
1257 2727 1.003464 GGGTTTTGGCAAGGCATGAAT 59.997 47.619 0.00 0.00 0.00 2.57
1514 2984 0.880278 GACAACTCGTGCCTGCAGAA 60.880 55.000 17.39 0.00 0.00 3.02
1596 3066 3.791973 GACACCATGTCGAGAGAAGAT 57.208 47.619 0.00 0.00 45.01 2.40
2031 3569 2.829741 AAGAGTCAGAGGACAAGCAC 57.170 50.000 0.00 0.00 46.80 4.40
2108 3651 6.643388 AGACAAATGTTTTGAGCCTTTTTCT 58.357 32.000 6.96 0.00 0.00 2.52
2147 3690 7.930217 TGTTGTAAGAACATCTCCAAAAGAAG 58.070 34.615 0.00 0.00 37.61 2.85
2152 3695 6.192970 AGAACATCTCCAAAAGAAGGAAGA 57.807 37.500 0.00 0.00 37.61 2.87
2165 3708 5.757850 AGAAGGAAGACAAATGTTGTGTC 57.242 39.130 0.00 0.00 45.52 3.67
2198 3741 3.472652 ACAAATGTCGTGAGCAGGTTAA 58.527 40.909 0.00 0.00 0.00 2.01
2224 3767 7.588497 AAAACACTTAATCCAAAAGAGCTCT 57.412 32.000 11.45 11.45 0.00 4.09
2225 3768 7.588497 AAACACTTAATCCAAAAGAGCTCTT 57.412 32.000 23.49 23.49 37.91 2.85
2227 3770 6.064717 ACACTTAATCCAAAAGAGCTCTTGT 58.935 36.000 29.09 21.75 36.12 3.16
2228 3771 6.016777 ACACTTAATCCAAAAGAGCTCTTGTG 60.017 38.462 31.93 31.93 40.15 3.33
2229 3772 6.205464 CACTTAATCCAAAAGAGCTCTTGTGA 59.795 38.462 37.69 28.02 42.44 3.58
2230 3773 6.429385 ACTTAATCCAAAAGAGCTCTTGTGAG 59.571 38.462 37.69 29.25 42.44 3.51
2247 3790 3.088044 GCTCGAGCTCACATGCAC 58.912 61.111 29.88 0.00 38.21 4.57
2249 3792 1.812922 CTCGAGCTCACATGCACCC 60.813 63.158 15.40 0.00 34.99 4.61
2250 3793 3.190849 CGAGCTCACATGCACCCG 61.191 66.667 15.40 0.00 34.99 5.28
2251 3794 2.046892 GAGCTCACATGCACCCGT 60.047 61.111 9.40 0.00 34.99 5.28
2253 3796 1.915614 GAGCTCACATGCACCCGTTG 61.916 60.000 9.40 0.00 34.99 4.10
2266 3809 4.336532 CACCCGTTGCTACAGTAAAATC 57.663 45.455 0.00 0.00 0.00 2.17
2267 3810 2.997986 ACCCGTTGCTACAGTAAAATCG 59.002 45.455 0.00 0.00 0.00 3.34
2268 3811 3.255725 CCCGTTGCTACAGTAAAATCGA 58.744 45.455 0.00 0.00 0.00 3.59
2269 3812 3.680937 CCCGTTGCTACAGTAAAATCGAA 59.319 43.478 0.00 0.00 0.00 3.71
2270 3813 4.152759 CCCGTTGCTACAGTAAAATCGAAA 59.847 41.667 0.00 0.00 0.00 3.46
2272 3815 6.137415 CCGTTGCTACAGTAAAATCGAAAAA 58.863 36.000 0.00 0.00 0.00 1.94
2335 3878 7.601886 ACAACAAACATTGATGTCTTTTTCACA 59.398 29.630 0.00 0.00 42.04 3.58
2336 3879 8.605746 CAACAAACATTGATGTCTTTTTCACAT 58.394 29.630 0.00 0.00 40.80 3.21
2337 3880 8.133754 ACAAACATTGATGTCTTTTTCACATG 57.866 30.769 0.00 0.00 40.80 3.21
2338 3881 7.765360 ACAAACATTGATGTCTTTTTCACATGT 59.235 29.630 0.00 0.00 40.80 3.21
2339 3882 7.703298 AACATTGATGTCTTTTTCACATGTG 57.297 32.000 20.18 20.18 40.80 3.21
2340 3883 6.808829 ACATTGATGTCTTTTTCACATGTGT 58.191 32.000 24.63 2.49 35.87 3.72
2341 3884 6.698329 ACATTGATGTCTTTTTCACATGTGTG 59.302 34.615 24.63 12.73 41.25 3.82
2342 3885 4.609947 TGATGTCTTTTTCACATGTGTGC 58.390 39.130 24.63 9.21 45.25 4.57
2343 3886 4.097589 TGATGTCTTTTTCACATGTGTGCA 59.902 37.500 24.63 13.74 45.25 4.57
2345 3888 5.008619 TGTCTTTTTCACATGTGTGCAAT 57.991 34.783 24.63 0.00 45.25 3.56
2346 3889 5.417811 TGTCTTTTTCACATGTGTGCAATT 58.582 33.333 24.63 0.00 45.25 2.32
2347 3890 5.873712 TGTCTTTTTCACATGTGTGCAATTT 59.126 32.000 24.63 0.00 45.25 1.82
2349 3892 7.094890 TGTCTTTTTCACATGTGTGCAATTTTT 60.095 29.630 24.63 0.00 45.25 1.94
2350 3893 7.426169 GTCTTTTTCACATGTGTGCAATTTTTC 59.574 33.333 24.63 5.36 45.25 2.29
2352 3895 6.922247 TTTCACATGTGTGCAATTTTTCAT 57.078 29.167 24.63 0.00 45.25 2.57
2353 3896 5.908916 TCACATGTGTGCAATTTTTCATG 57.091 34.783 24.63 0.37 45.25 3.07
2354 3897 5.598769 TCACATGTGTGCAATTTTTCATGA 58.401 33.333 24.63 0.00 45.25 3.07
2355 3898 5.462729 TCACATGTGTGCAATTTTTCATGAC 59.537 36.000 24.63 0.00 45.25 3.06
2356 3899 5.234543 CACATGTGTGCAATTTTTCATGACA 59.765 36.000 18.03 0.00 39.39 3.58
2358 3901 6.315642 ACATGTGTGCAATTTTTCATGACAAA 59.684 30.769 9.35 9.35 36.95 2.83
2359 3902 6.732531 TGTGTGCAATTTTTCATGACAAAA 57.267 29.167 10.87 12.81 0.00 2.44
2360 3903 7.317842 TGTGTGCAATTTTTCATGACAAAAT 57.682 28.000 10.87 14.20 35.72 1.82
2361 3904 7.187480 TGTGTGCAATTTTTCATGACAAAATG 58.813 30.769 15.15 15.15 34.68 2.32
2364 3907 5.759963 GCAATTTTTCATGACAAAATGGCA 58.240 33.333 28.21 7.04 44.79 4.92
2366 3909 6.864165 GCAATTTTTCATGACAAAATGGCATT 59.136 30.769 28.21 6.96 45.54 3.56
2367 3910 7.061326 GCAATTTTTCATGACAAAATGGCATTC 59.939 33.333 28.21 12.15 45.54 2.67
2369 3912 4.517952 TTCATGACAAAATGGCATTCGT 57.482 36.364 14.04 13.61 45.54 3.85
2370 3913 3.835779 TCATGACAAAATGGCATTCGTG 58.164 40.909 14.04 16.25 45.54 4.35
2371 3914 2.063156 TGACAAAATGGCATTCGTGC 57.937 45.000 14.04 10.95 24.43 5.34
2372 3915 1.339291 TGACAAAATGGCATTCGTGCA 59.661 42.857 14.04 13.02 36.33 4.57
2373 3916 1.987770 GACAAAATGGCATTCGTGCAG 59.012 47.619 14.04 3.00 36.33 4.41
2374 3917 1.337074 ACAAAATGGCATTCGTGCAGG 60.337 47.619 14.04 0.00 36.33 4.85
2375 3918 0.968405 AAAATGGCATTCGTGCAGGT 59.032 45.000 14.04 0.00 36.33 4.00
2376 3919 0.527565 AAATGGCATTCGTGCAGGTC 59.472 50.000 14.04 0.00 36.33 3.85
2377 3920 0.322816 AATGGCATTCGTGCAGGTCT 60.323 50.000 6.96 0.00 36.33 3.85
2378 3921 0.745845 ATGGCATTCGTGCAGGTCTC 60.746 55.000 6.26 0.00 36.33 3.36
2380 3923 2.456119 GCATTCGTGCAGGTCTCGG 61.456 63.158 6.26 0.00 32.98 4.63
2381 3924 1.079819 CATTCGTGCAGGTCTCGGT 60.080 57.895 6.26 0.00 32.98 4.69
2382 3925 1.079819 ATTCGTGCAGGTCTCGGTG 60.080 57.895 6.26 0.00 32.98 4.94
2383 3926 1.532604 ATTCGTGCAGGTCTCGGTGA 61.533 55.000 6.26 0.00 32.98 4.02
2384 3927 1.740332 TTCGTGCAGGTCTCGGTGAA 61.740 55.000 6.26 0.00 32.98 3.18
2385 3928 1.300620 CGTGCAGGTCTCGGTGAAA 60.301 57.895 0.00 0.00 0.00 2.69
2386 3929 0.878523 CGTGCAGGTCTCGGTGAAAA 60.879 55.000 0.00 0.00 0.00 2.29
2387 3930 1.305201 GTGCAGGTCTCGGTGAAAAA 58.695 50.000 0.00 0.00 0.00 1.94
2408 3951 6.917217 AAAAACAAAATCGATGCTCCAAAA 57.083 29.167 0.00 0.00 0.00 2.44
2409 3952 7.495135 AAAAACAAAATCGATGCTCCAAAAT 57.505 28.000 0.00 0.00 0.00 1.82
2410 3953 8.600449 AAAAACAAAATCGATGCTCCAAAATA 57.400 26.923 0.00 0.00 0.00 1.40
2411 3954 7.581011 AAACAAAATCGATGCTCCAAAATAC 57.419 32.000 0.00 0.00 0.00 1.89
2412 3955 6.515272 ACAAAATCGATGCTCCAAAATACT 57.485 33.333 0.00 0.00 0.00 2.12
2414 3957 7.029563 ACAAAATCGATGCTCCAAAATACTTC 58.970 34.615 0.00 0.00 0.00 3.01
2415 3958 5.757850 AATCGATGCTCCAAAATACTTCC 57.242 39.130 0.00 0.00 0.00 3.46
2416 3959 4.214986 TCGATGCTCCAAAATACTTCCA 57.785 40.909 0.00 0.00 0.00 3.53
2417 3960 4.584874 TCGATGCTCCAAAATACTTCCAA 58.415 39.130 0.00 0.00 0.00 3.53
2418 3961 5.007034 TCGATGCTCCAAAATACTTCCAAA 58.993 37.500 0.00 0.00 0.00 3.28
2419 3962 5.475220 TCGATGCTCCAAAATACTTCCAAAA 59.525 36.000 0.00 0.00 0.00 2.44
2420 3963 6.015856 TCGATGCTCCAAAATACTTCCAAAAA 60.016 34.615 0.00 0.00 0.00 1.94
2421 3964 6.089417 CGATGCTCCAAAATACTTCCAAAAAC 59.911 38.462 0.00 0.00 0.00 2.43
2422 3965 6.227298 TGCTCCAAAATACTTCCAAAAACA 57.773 33.333 0.00 0.00 0.00 2.83
2423 3966 6.279882 TGCTCCAAAATACTTCCAAAAACAG 58.720 36.000 0.00 0.00 0.00 3.16
2427 3970 9.161629 CTCCAAAATACTTCCAAAAACAGTTTT 57.838 29.630 5.37 5.37 37.43 2.43
2452 3995 7.769272 TTTTTCGAGCATGATTTTGTCTTTT 57.231 28.000 0.00 0.00 0.00 2.27
2453 3996 7.769272 TTTTCGAGCATGATTTTGTCTTTTT 57.231 28.000 0.00 0.00 0.00 1.94
2470 4013 2.673775 TTTTGATGAGGCCTCCACAA 57.326 45.000 29.95 28.10 0.00 3.33
2471 4014 2.905415 TTTGATGAGGCCTCCACAAT 57.095 45.000 29.27 19.10 0.00 2.71
2472 4015 2.133281 TTGATGAGGCCTCCACAATG 57.867 50.000 29.95 0.00 0.00 2.82
2473 4016 0.394762 TGATGAGGCCTCCACAATGC 60.395 55.000 29.95 11.24 0.00 3.56
2474 4017 1.076485 ATGAGGCCTCCACAATGCC 60.076 57.895 29.95 2.48 45.70 4.40
2477 4020 4.039042 GGCCTCCACAATGCCATT 57.961 55.556 0.00 0.00 44.70 3.16
2478 4021 2.289840 GGCCTCCACAATGCCATTT 58.710 52.632 0.00 0.00 44.70 2.32
2479 4022 0.176449 GGCCTCCACAATGCCATTTC 59.824 55.000 0.00 0.00 44.70 2.17
2480 4023 0.896923 GCCTCCACAATGCCATTTCA 59.103 50.000 0.00 0.00 0.00 2.69
2482 4025 2.482490 GCCTCCACAATGCCATTTCATC 60.482 50.000 0.00 0.00 0.00 2.92
2483 4026 2.761767 CCTCCACAATGCCATTTCATCA 59.238 45.455 0.00 0.00 0.00 3.07
2485 4028 2.164017 TCCACAATGCCATTTCATCACG 59.836 45.455 0.00 0.00 0.00 4.35
2487 4030 3.367190 CCACAATGCCATTTCATCACGAA 60.367 43.478 0.00 0.00 0.00 3.85
2489 4032 4.685165 CACAATGCCATTTCATCACGAAAA 59.315 37.500 0.00 0.00 46.48 2.29
2490 4033 5.349270 CACAATGCCATTTCATCACGAAAAT 59.651 36.000 0.00 0.00 46.48 1.82
2491 4034 5.933463 ACAATGCCATTTCATCACGAAAATT 59.067 32.000 0.00 0.00 46.48 1.82
2493 4036 5.842619 TGCCATTTCATCACGAAAATTTG 57.157 34.783 0.00 0.00 46.48 2.32
2495 4038 4.152045 GCCATTTCATCACGAAAATTTGCA 59.848 37.500 0.00 0.00 46.48 4.08
2496 4039 5.163834 GCCATTTCATCACGAAAATTTGCAT 60.164 36.000 0.00 0.00 46.48 3.96
2497 4040 6.244999 CCATTTCATCACGAAAATTTGCATG 58.755 36.000 0.00 0.00 46.48 4.06
2498 4041 4.907188 TTCATCACGAAAATTTGCATGC 57.093 36.364 11.82 11.82 0.00 4.06
2500 4043 4.496360 TCATCACGAAAATTTGCATGCAT 58.504 34.783 23.37 5.68 0.00 3.96
2501 4044 4.327627 TCATCACGAAAATTTGCATGCATG 59.672 37.500 23.37 22.70 0.00 4.06
2504 4047 3.184783 CACGAAAATTTGCATGCATGTGT 59.815 39.130 26.79 10.45 0.00 3.72
2505 4048 4.385146 CACGAAAATTTGCATGCATGTGTA 59.615 37.500 26.79 12.97 0.00 2.90
2506 4049 4.987285 ACGAAAATTTGCATGCATGTGTAA 59.013 33.333 26.79 12.95 0.00 2.41
2530 4249 5.410746 ACACACATCAATGTTTGTTGCAAAA 59.589 32.000 0.00 0.00 46.18 2.44
2589 4308 6.969993 TTTGATTTTACTGTAGCAAAGGGT 57.030 33.333 0.00 0.00 0.00 4.34
2590 4309 5.957842 TGATTTTACTGTAGCAAAGGGTG 57.042 39.130 0.00 0.00 0.00 4.61
2600 4319 2.649831 CAAAGGGTGCATGTGAGCT 58.350 52.632 0.00 0.00 34.99 4.09
2601 4320 0.524862 CAAAGGGTGCATGTGAGCTC 59.475 55.000 6.82 6.82 34.99 4.09
2605 4324 2.459442 GGTGCATGTGAGCTCGAGC 61.459 63.158 30.01 30.01 42.49 5.03
2618 4337 3.651803 GCTCGAGCTAACATACTCCAT 57.348 47.619 29.88 0.00 38.21 3.41
2619 4338 3.312828 GCTCGAGCTAACATACTCCATG 58.687 50.000 29.88 0.00 38.15 3.66
2637 4396 8.469309 ACTCCATGTTAATCATCCTTTATTGG 57.531 34.615 0.00 0.00 34.09 3.16
2667 4426 7.273381 CCTCCAATAACGTTTTTCTGCTTATTG 59.727 37.037 5.91 6.88 35.75 1.90
2668 4427 7.877003 TCCAATAACGTTTTTCTGCTTATTGA 58.123 30.769 5.91 0.00 37.13 2.57
2678 4437 5.801350 TTCTGCTTATTGAGAATGAACGG 57.199 39.130 0.00 0.00 0.00 4.44
2684 4443 1.153353 TTGAGAATGAACGGTTCGCC 58.847 50.000 15.52 7.46 0.00 5.54
2685 4444 0.672401 TGAGAATGAACGGTTCGCCC 60.672 55.000 15.52 7.14 0.00 6.13
2687 4446 0.035439 AGAATGAACGGTTCGCCCAT 60.035 50.000 15.52 2.02 0.00 4.00
2724 4483 3.146066 CCCCAATACTCTCTCTCTCTCG 58.854 54.545 0.00 0.00 0.00 4.04
2725 4484 3.181449 CCCCAATACTCTCTCTCTCTCGA 60.181 52.174 0.00 0.00 0.00 4.04
2728 4487 4.695455 CCAATACTCTCTCTCTCTCGATCC 59.305 50.000 0.00 0.00 0.00 3.36
2731 4490 2.104792 ACTCTCTCTCTCTCGATCCCTG 59.895 54.545 0.00 0.00 0.00 4.45
2739 4498 0.260230 TCTCGATCCCTGGCTCTCTT 59.740 55.000 0.00 0.00 0.00 2.85
2741 4500 2.091830 TCTCGATCCCTGGCTCTCTTTA 60.092 50.000 0.00 0.00 0.00 1.85
2757 4530 4.806775 TCTCTTTATCTCTCTCTCACGACG 59.193 45.833 0.00 0.00 0.00 5.12
2816 4780 7.083875 TGCTCCAAGCTTGTAATTGTTATAC 57.916 36.000 24.35 2.18 42.97 1.47
2847 4811 8.835467 TTTTTAGACAAATTTGAAGACTCACG 57.165 30.769 24.64 0.00 0.00 4.35
2850 4814 2.032030 ACAAATTTGAAGACTCACGCCG 60.032 45.455 24.64 0.00 0.00 6.46
2853 4817 2.736144 TTTGAAGACTCACGCCGTAT 57.264 45.000 0.00 0.00 0.00 3.06
2854 4818 1.990799 TTGAAGACTCACGCCGTATG 58.009 50.000 0.00 0.00 0.00 2.39
2862 4826 4.577693 AGACTCACGCCGTATGAATAGTAA 59.422 41.667 0.00 0.00 0.00 2.24
2901 4865 1.583054 GGTTCTGATACATGGGTCGC 58.417 55.000 0.00 0.00 0.00 5.19
2923 4890 1.078708 CGGTTACTCCCGCCACAAT 60.079 57.895 0.00 0.00 41.78 2.71
2943 4910 7.000575 ACAATGCATGTGTACTCGTTAATAC 57.999 36.000 0.00 0.00 41.93 1.89
2948 4915 6.034591 GCATGTGTACTCGTTAATACTCACT 58.965 40.000 0.00 0.00 30.13 3.41
2949 4916 6.020599 GCATGTGTACTCGTTAATACTCACTG 60.021 42.308 0.00 0.00 30.13 3.66
2950 4917 5.396484 TGTGTACTCGTTAATACTCACTGC 58.604 41.667 0.00 0.00 0.00 4.40
2951 4918 5.048573 TGTGTACTCGTTAATACTCACTGCA 60.049 40.000 0.00 0.00 0.00 4.41
2954 4921 2.526077 TCGTTAATACTCACTGCAGCG 58.474 47.619 15.27 3.95 0.00 5.18
2976 4943 2.678336 CAAGCGGTTTCCTAAGACCATC 59.322 50.000 0.00 0.00 35.63 3.51
2993 4960 3.809832 ACCATCTGCGCTATTCACATAAC 59.190 43.478 9.73 0.00 0.00 1.89
2994 4961 3.120889 CCATCTGCGCTATTCACATAACG 60.121 47.826 9.73 0.00 0.00 3.18
2995 4962 1.858458 TCTGCGCTATTCACATAACGC 59.142 47.619 9.73 0.00 46.34 4.84
2997 4964 2.730183 GCGCTATTCACATAACGCAA 57.270 45.000 0.00 0.00 45.74 4.85
2998 4965 3.253371 GCGCTATTCACATAACGCAAT 57.747 42.857 0.00 0.00 45.74 3.56
3001 4968 3.894288 CGCTATTCACATAACGCAATTCG 59.106 43.478 0.00 0.00 45.38 3.34
3012 4979 1.950472 CGCAATTCGTTCCTGACAAC 58.050 50.000 0.00 0.00 0.00 3.32
3013 4980 1.399727 CGCAATTCGTTCCTGACAACC 60.400 52.381 0.00 0.00 0.00 3.77
3015 4982 0.872388 AATTCGTTCCTGACAACCGC 59.128 50.000 0.00 0.00 0.00 5.68
3016 4983 0.250124 ATTCGTTCCTGACAACCGCA 60.250 50.000 0.00 0.00 0.00 5.69
3017 4984 0.250124 TTCGTTCCTGACAACCGCAT 60.250 50.000 0.00 0.00 0.00 4.73
3018 4985 0.948623 TCGTTCCTGACAACCGCATG 60.949 55.000 0.00 0.00 0.00 4.06
3019 4986 1.210155 GTTCCTGACAACCGCATGC 59.790 57.895 7.91 7.91 0.00 4.06
3020 4987 1.228094 TTCCTGACAACCGCATGCA 60.228 52.632 19.57 0.00 0.00 3.96
3022 4989 0.608856 TCCTGACAACCGCATGCAAT 60.609 50.000 19.57 0.89 0.00 3.56
3037 5004 4.637483 ATGCAATGATTTTGTACCGGAG 57.363 40.909 9.46 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.351371 GCTTAGTCCATATGCCTATGCTTCTA 60.351 42.308 19.98 3.71 38.71 2.10
1 2 5.570439 GCTTAGTCCATATGCCTATGCTTCT 60.570 44.000 19.98 4.49 38.71 2.85
2 3 4.633565 GCTTAGTCCATATGCCTATGCTTC 59.366 45.833 19.98 0.00 38.71 3.86
3 4 4.042062 TGCTTAGTCCATATGCCTATGCTT 59.958 41.667 23.67 0.00 38.71 3.91
4 5 3.584406 TGCTTAGTCCATATGCCTATGCT 59.416 43.478 23.67 0.13 38.71 3.79
5 6 3.942829 TGCTTAGTCCATATGCCTATGC 58.057 45.455 20.22 20.22 34.54 3.14
6 7 6.882610 TTTTGCTTAGTCCATATGCCTATG 57.117 37.500 0.00 2.24 34.43 2.23
7 8 7.290061 TCTTTTTGCTTAGTCCATATGCCTAT 58.710 34.615 0.00 0.00 34.43 2.57
8 9 6.658849 TCTTTTTGCTTAGTCCATATGCCTA 58.341 36.000 0.00 0.00 34.43 3.93
9 10 5.509498 TCTTTTTGCTTAGTCCATATGCCT 58.491 37.500 0.00 0.00 34.43 4.75
10 11 5.835113 TCTTTTTGCTTAGTCCATATGCC 57.165 39.130 0.00 0.00 34.43 4.40
11 12 8.532977 TTTTTCTTTTTGCTTAGTCCATATGC 57.467 30.769 0.00 0.00 35.59 3.14
44 45 0.672342 CTGTTGGCTGAAGCTTTGCT 59.328 50.000 19.80 0.00 42.56 3.91
45 46 0.386838 ACTGTTGGCTGAAGCTTTGC 59.613 50.000 14.52 14.52 41.70 3.68
46 47 2.861935 CAAACTGTTGGCTGAAGCTTTG 59.138 45.455 0.00 0.00 41.70 2.77
47 48 3.169355 CAAACTGTTGGCTGAAGCTTT 57.831 42.857 0.00 0.00 41.70 3.51
48 49 2.877043 CAAACTGTTGGCTGAAGCTT 57.123 45.000 0.00 0.00 41.70 3.74
56 57 9.926214 ACATGATTATGCATCCAAACTGTTGGC 62.926 40.741 0.19 0.00 44.58 4.52
57 58 6.628621 ACATGATTATGCATCCAAACTGTTGG 60.629 38.462 0.19 0.00 45.41 3.77
58 59 6.254804 CACATGATTATGCATCCAAACTGTTG 59.745 38.462 0.19 0.00 37.85 3.33
59 60 6.153170 TCACATGATTATGCATCCAAACTGTT 59.847 34.615 0.19 0.00 37.85 3.16
60 61 5.653330 TCACATGATTATGCATCCAAACTGT 59.347 36.000 0.19 0.00 37.85 3.55
61 62 6.139048 TCACATGATTATGCATCCAAACTG 57.861 37.500 0.19 0.00 37.85 3.16
62 63 6.322969 ACATCACATGATTATGCATCCAAACT 59.677 34.615 0.19 0.00 37.85 2.66
63 64 6.419710 CACATCACATGATTATGCATCCAAAC 59.580 38.462 0.19 0.00 37.85 2.93
64 65 6.508777 CACATCACATGATTATGCATCCAAA 58.491 36.000 0.19 0.00 37.85 3.28
65 66 5.508320 GCACATCACATGATTATGCATCCAA 60.508 40.000 17.35 0.00 37.85 3.53
66 67 4.022676 GCACATCACATGATTATGCATCCA 60.023 41.667 17.35 0.00 37.85 3.41
67 68 4.022676 TGCACATCACATGATTATGCATCC 60.023 41.667 19.63 0.00 37.85 3.51
68 69 5.116069 TGCACATCACATGATTATGCATC 57.884 39.130 19.63 0.00 37.85 3.91
69 70 5.523438 TTGCACATCACATGATTATGCAT 57.477 34.783 22.29 3.79 37.85 3.96
70 71 4.985538 TTGCACATCACATGATTATGCA 57.014 36.364 19.63 19.63 37.85 3.96
71 72 6.919115 TGTAATTGCACATCACATGATTATGC 59.081 34.615 16.13 16.13 37.85 3.14
84 85 8.035984 TGAATGAACAATGATGTAATTGCACAT 58.964 29.630 0.00 2.42 40.54 3.21
85 86 7.328982 GTGAATGAACAATGATGTAATTGCACA 59.671 33.333 0.00 0.00 40.54 4.57
86 87 7.201461 GGTGAATGAACAATGATGTAATTGCAC 60.201 37.037 0.00 0.00 40.54 4.57
87 88 6.812656 GGTGAATGAACAATGATGTAATTGCA 59.187 34.615 0.00 0.00 40.54 4.08
88 89 6.256321 GGGTGAATGAACAATGATGTAATTGC 59.744 38.462 0.00 0.00 40.54 3.56
89 90 7.321908 TGGGTGAATGAACAATGATGTAATTG 58.678 34.615 0.00 0.00 39.40 2.32
90 91 7.479352 TGGGTGAATGAACAATGATGTAATT 57.521 32.000 0.00 0.00 39.40 1.40
91 92 7.479352 TTGGGTGAATGAACAATGATGTAAT 57.521 32.000 0.00 0.00 39.40 1.89
92 93 6.907853 TTGGGTGAATGAACAATGATGTAA 57.092 33.333 0.00 0.00 39.40 2.41
93 94 7.178097 TGAATTGGGTGAATGAACAATGATGTA 59.822 33.333 0.00 0.00 39.40 2.29
94 95 6.014413 TGAATTGGGTGAATGAACAATGATGT 60.014 34.615 0.00 0.00 43.14 3.06
95 96 6.399743 TGAATTGGGTGAATGAACAATGATG 58.600 36.000 0.00 0.00 34.12 3.07
96 97 6.608539 TGAATTGGGTGAATGAACAATGAT 57.391 33.333 0.00 0.00 34.12 2.45
97 98 6.416631 TTGAATTGGGTGAATGAACAATGA 57.583 33.333 0.00 0.00 34.12 2.57
98 99 7.493743 TTTTGAATTGGGTGAATGAACAATG 57.506 32.000 0.00 0.00 34.12 2.82
99 100 6.205270 GCTTTTGAATTGGGTGAATGAACAAT 59.795 34.615 0.00 0.00 35.24 2.71
100 101 5.526846 GCTTTTGAATTGGGTGAATGAACAA 59.473 36.000 0.00 0.00 0.00 2.83
101 102 5.055812 GCTTTTGAATTGGGTGAATGAACA 58.944 37.500 0.00 0.00 0.00 3.18
102 103 4.452114 GGCTTTTGAATTGGGTGAATGAAC 59.548 41.667 0.00 0.00 0.00 3.18
103 104 4.347583 AGGCTTTTGAATTGGGTGAATGAA 59.652 37.500 0.00 0.00 0.00 2.57
104 105 3.903090 AGGCTTTTGAATTGGGTGAATGA 59.097 39.130 0.00 0.00 0.00 2.57
105 106 3.998341 CAGGCTTTTGAATTGGGTGAATG 59.002 43.478 0.00 0.00 0.00 2.67
106 107 3.903090 TCAGGCTTTTGAATTGGGTGAAT 59.097 39.130 0.00 0.00 0.00 2.57
107 108 3.069443 GTCAGGCTTTTGAATTGGGTGAA 59.931 43.478 0.00 0.00 0.00 3.18
108 109 2.627699 GTCAGGCTTTTGAATTGGGTGA 59.372 45.455 0.00 0.00 0.00 4.02
109 110 2.607771 CGTCAGGCTTTTGAATTGGGTG 60.608 50.000 0.00 0.00 0.00 4.61
110 111 1.613437 CGTCAGGCTTTTGAATTGGGT 59.387 47.619 0.00 0.00 0.00 4.51
111 112 1.613437 ACGTCAGGCTTTTGAATTGGG 59.387 47.619 0.00 0.00 0.00 4.12
112 113 2.607771 CCACGTCAGGCTTTTGAATTGG 60.608 50.000 0.00 0.00 0.00 3.16
113 114 2.664916 CCACGTCAGGCTTTTGAATTG 58.335 47.619 0.00 0.00 0.00 2.32
124 125 2.740055 GAGCAGTGCCACGTCAGG 60.740 66.667 12.58 0.00 0.00 3.86
125 126 3.108289 CGAGCAGTGCCACGTCAG 61.108 66.667 12.58 0.00 0.00 3.51
138 139 1.523095 CGAATACTAAAGCTGGCGAGC 59.477 52.381 13.51 13.51 46.64 5.03
139 140 2.128035 CCGAATACTAAAGCTGGCGAG 58.872 52.381 0.00 0.00 0.00 5.03
140 141 1.202486 CCCGAATACTAAAGCTGGCGA 60.202 52.381 0.00 0.00 0.00 5.54
141 142 1.202486 TCCCGAATACTAAAGCTGGCG 60.202 52.381 0.00 0.00 0.00 5.69
142 143 2.484889 CTCCCGAATACTAAAGCTGGC 58.515 52.381 0.00 0.00 0.00 4.85
143 144 2.807108 GCCTCCCGAATACTAAAGCTGG 60.807 54.545 0.00 0.00 0.00 4.85
144 145 2.484889 GCCTCCCGAATACTAAAGCTG 58.515 52.381 0.00 0.00 0.00 4.24
145 146 1.068741 CGCCTCCCGAATACTAAAGCT 59.931 52.381 0.00 0.00 40.02 3.74
146 147 1.068127 TCGCCTCCCGAATACTAAAGC 59.932 52.381 0.00 0.00 44.21 3.51
147 148 2.621998 TCTCGCCTCCCGAATACTAAAG 59.378 50.000 0.00 0.00 46.81 1.85
148 149 2.658285 TCTCGCCTCCCGAATACTAAA 58.342 47.619 0.00 0.00 46.81 1.85
149 150 2.353357 TCTCGCCTCCCGAATACTAA 57.647 50.000 0.00 0.00 46.81 2.24
150 151 2.581216 ATCTCGCCTCCCGAATACTA 57.419 50.000 0.00 0.00 46.81 1.82
151 152 2.040012 TCTATCTCGCCTCCCGAATACT 59.960 50.000 0.00 0.00 46.81 2.12
152 153 2.162008 GTCTATCTCGCCTCCCGAATAC 59.838 54.545 0.00 0.00 46.81 1.89
153 154 2.434428 GTCTATCTCGCCTCCCGAATA 58.566 52.381 0.00 0.00 46.81 1.75
154 155 1.249407 GTCTATCTCGCCTCCCGAAT 58.751 55.000 0.00 0.00 46.81 3.34
155 156 1.164662 CGTCTATCTCGCCTCCCGAA 61.165 60.000 0.00 0.00 46.81 4.30
156 157 1.597302 CGTCTATCTCGCCTCCCGA 60.597 63.158 0.00 0.00 45.15 5.14
157 158 2.618219 CCGTCTATCTCGCCTCCCG 61.618 68.421 0.00 0.00 38.61 5.14
158 159 2.269529 CCCGTCTATCTCGCCTCCC 61.270 68.421 0.00 0.00 0.00 4.30
159 160 2.269529 CCCCGTCTATCTCGCCTCC 61.270 68.421 0.00 0.00 0.00 4.30
160 161 0.609681 ATCCCCGTCTATCTCGCCTC 60.610 60.000 0.00 0.00 0.00 4.70
161 162 0.178958 AATCCCCGTCTATCTCGCCT 60.179 55.000 0.00 0.00 0.00 5.52
162 163 0.680061 AAATCCCCGTCTATCTCGCC 59.320 55.000 0.00 0.00 0.00 5.54
163 164 1.340248 TGAAATCCCCGTCTATCTCGC 59.660 52.381 0.00 0.00 0.00 5.03
164 165 2.608261 GCTGAAATCCCCGTCTATCTCG 60.608 54.545 0.00 0.00 0.00 4.04
165 166 2.608261 CGCTGAAATCCCCGTCTATCTC 60.608 54.545 0.00 0.00 0.00 2.75
166 167 1.341531 CGCTGAAATCCCCGTCTATCT 59.658 52.381 0.00 0.00 0.00 1.98
167 168 1.068741 ACGCTGAAATCCCCGTCTATC 59.931 52.381 0.00 0.00 0.00 2.08
168 169 1.120530 ACGCTGAAATCCCCGTCTAT 58.879 50.000 0.00 0.00 0.00 1.98
169 170 0.899720 AACGCTGAAATCCCCGTCTA 59.100 50.000 0.00 0.00 32.89 2.59
170 171 0.391263 GAACGCTGAAATCCCCGTCT 60.391 55.000 0.00 0.00 32.89 4.18
171 172 0.672401 TGAACGCTGAAATCCCCGTC 60.672 55.000 0.00 0.00 32.89 4.79
172 173 0.673644 CTGAACGCTGAAATCCCCGT 60.674 55.000 0.00 0.00 35.14 5.28
173 174 1.369091 CCTGAACGCTGAAATCCCCG 61.369 60.000 0.00 0.00 0.00 5.73
174 175 1.657751 GCCTGAACGCTGAAATCCCC 61.658 60.000 0.00 0.00 0.00 4.81
175 176 0.678048 AGCCTGAACGCTGAAATCCC 60.678 55.000 0.00 0.00 37.82 3.85
176 177 1.168714 AAGCCTGAACGCTGAAATCC 58.831 50.000 0.00 0.00 39.64 3.01
177 178 4.083271 ACTTTAAGCCTGAACGCTGAAATC 60.083 41.667 0.00 0.00 38.32 2.17
178 179 3.821033 ACTTTAAGCCTGAACGCTGAAAT 59.179 39.130 0.00 0.00 38.32 2.17
179 180 3.003275 CACTTTAAGCCTGAACGCTGAAA 59.997 43.478 0.00 0.00 39.64 2.69
180 181 2.548057 CACTTTAAGCCTGAACGCTGAA 59.452 45.455 0.00 0.00 39.64 3.02
181 182 2.143122 CACTTTAAGCCTGAACGCTGA 58.857 47.619 0.00 0.00 39.64 4.26
182 183 1.873591 ACACTTTAAGCCTGAACGCTG 59.126 47.619 0.00 0.00 39.64 5.18
183 184 2.256117 ACACTTTAAGCCTGAACGCT 57.744 45.000 0.00 0.00 42.22 5.07
184 185 5.789710 TTATACACTTTAAGCCTGAACGC 57.210 39.130 0.00 0.00 0.00 4.84
185 186 7.748847 ACATTTATACACTTTAAGCCTGAACG 58.251 34.615 0.00 0.00 0.00 3.95
197 198 9.970395 CATGCATCCAAATACATTTATACACTT 57.030 29.630 0.00 0.00 0.00 3.16
198 199 9.135189 ACATGCATCCAAATACATTTATACACT 57.865 29.630 0.00 0.00 0.00 3.55
205 206 9.669887 AAAATGTACATGCATCCAAATACATTT 57.330 25.926 22.06 22.06 45.72 2.32
206 207 9.669887 AAAAATGTACATGCATCCAAATACATT 57.330 25.926 9.63 16.51 42.17 2.71
207 208 9.100554 CAAAAATGTACATGCATCCAAATACAT 57.899 29.630 9.63 3.97 37.53 2.29
208 209 7.548427 CCAAAAATGTACATGCATCCAAATACA 59.452 33.333 9.63 1.63 32.94 2.29
209 210 7.548780 ACCAAAAATGTACATGCATCCAAATAC 59.451 33.333 9.63 0.00 0.00 1.89
213 214 5.480642 ACCAAAAATGTACATGCATCCAA 57.519 34.783 9.63 0.00 0.00 3.53
288 289 9.029243 CGCATGCAATTAAATTTCTACCAATTA 57.971 29.630 19.57 0.00 0.00 1.40
289 290 7.763528 TCGCATGCAATTAAATTTCTACCAATT 59.236 29.630 19.57 0.00 0.00 2.32
354 357 2.482316 CCGGTTTACACATCGATAGGCA 60.482 50.000 0.00 0.00 0.00 4.75
360 363 1.735018 CAATGCCGGTTTACACATCGA 59.265 47.619 1.90 0.00 0.00 3.59
408 411 2.110213 GGGTGAAGCGTGTGACCA 59.890 61.111 0.00 0.00 0.00 4.02
417 420 1.210478 TCTTGGATAGCTGGGTGAAGC 59.790 52.381 0.00 0.00 43.88 3.86
427 430 1.068194 CGGTCTCGGATCTTGGATAGC 60.068 57.143 0.00 0.00 0.00 2.97
484 1929 7.762588 ATAGTACTATTGCAGGTTAGATCGT 57.237 36.000 9.71 0.00 0.00 3.73
508 1953 0.624785 CCCCACCCCCGTGTATTTTA 59.375 55.000 0.00 0.00 38.41 1.52
509 1954 1.384975 CCCCACCCCCGTGTATTTT 59.615 57.895 0.00 0.00 38.41 1.82
511 1956 3.018805 CCCCCACCCCCGTGTATT 61.019 66.667 0.00 0.00 38.41 1.89
528 1973 2.615929 ATACACCCCCACCCCCAC 60.616 66.667 0.00 0.00 0.00 4.61
529 1974 2.615608 CATACACCCCCACCCCCA 60.616 66.667 0.00 0.00 0.00 4.96
543 1988 0.179132 CGCTTTGCATTGCTGGCATA 60.179 50.000 10.49 0.00 41.58 3.14
554 1999 0.245266 TCAGTATCCGTCGCTTTGCA 59.755 50.000 0.00 0.00 0.00 4.08
589 2034 2.746362 CTGCAGGTGAATCAAGGAACTC 59.254 50.000 5.57 0.00 38.49 3.01
595 2040 2.775911 TCTCCTGCAGGTGAATCAAG 57.224 50.000 30.41 19.69 35.05 3.02
610 2055 2.386661 TCGTCAGCAAGGAATTCTCC 57.613 50.000 5.23 0.00 42.81 3.71
611 2056 3.525537 TCATCGTCAGCAAGGAATTCTC 58.474 45.455 5.23 0.00 0.00 2.87
612 2057 3.529533 CTCATCGTCAGCAAGGAATTCT 58.470 45.455 5.23 0.00 0.00 2.40
613 2058 2.611292 CCTCATCGTCAGCAAGGAATTC 59.389 50.000 0.00 0.00 0.00 2.17
614 2059 2.237143 TCCTCATCGTCAGCAAGGAATT 59.763 45.455 0.00 0.00 33.27 2.17
1018 2476 0.663568 CCGTCGAAGTGGTCTGTGAC 60.664 60.000 0.00 0.00 0.00 3.67
1110 2580 0.591236 CGTCGAAGCTGAGCTCTAGC 60.591 60.000 22.79 22.79 38.25 3.42
1241 2711 1.275856 GGTGATTCATGCCTTGCCAAA 59.724 47.619 0.00 0.00 0.00 3.28
1361 2831 1.450312 CAAGCCTTTCCGATCCGCT 60.450 57.895 0.00 0.00 0.00 5.52
1514 2984 1.827344 TGGACATGTCGATGAGAAGCT 59.173 47.619 19.33 0.00 33.36 3.74
2094 3637 4.709397 TCACCTCAAAGAAAAAGGCTCAAA 59.291 37.500 0.00 0.00 33.21 2.69
2108 3651 8.307483 TGTTCTTACAACATTTTTCACCTCAAA 58.693 29.630 0.00 0.00 0.00 2.69
2230 3773 2.459442 GGTGCATGTGAGCTCGAGC 61.459 63.158 30.01 30.01 42.49 5.03
2232 3775 2.265739 GGGTGCATGTGAGCTCGA 59.734 61.111 9.64 0.00 34.99 4.04
2233 3776 3.190849 CGGGTGCATGTGAGCTCG 61.191 66.667 9.64 0.00 34.99 5.03
2234 3777 1.672356 AACGGGTGCATGTGAGCTC 60.672 57.895 6.82 6.82 34.99 4.09
2235 3778 1.968017 CAACGGGTGCATGTGAGCT 60.968 57.895 0.00 0.00 34.99 4.09
2236 3779 2.562912 CAACGGGTGCATGTGAGC 59.437 61.111 0.00 0.00 0.00 4.26
2246 3789 2.997986 CGATTTTACTGTAGCAACGGGT 59.002 45.455 0.00 0.00 36.19 5.28
2247 3790 3.255725 TCGATTTTACTGTAGCAACGGG 58.744 45.455 0.00 0.00 36.19 5.28
2309 3852 7.601886 TGTGAAAAAGACATCAATGTTTGTTGT 59.398 29.630 4.15 4.15 44.00 3.32
2310 3853 7.961855 TGTGAAAAAGACATCAATGTTTGTTG 58.038 30.769 0.00 0.00 41.95 3.33
2311 3854 8.605746 CATGTGAAAAAGACATCAATGTTTGTT 58.394 29.630 0.00 0.00 41.95 2.83
2312 3855 7.765360 ACATGTGAAAAAGACATCAATGTTTGT 59.235 29.630 0.00 0.00 41.95 2.83
2314 3857 7.765360 ACACATGTGAAAAAGACATCAATGTTT 59.235 29.630 31.94 0.00 41.95 2.83
2315 3858 7.267128 ACACATGTGAAAAAGACATCAATGTT 58.733 30.769 31.94 0.00 41.95 2.71
2316 3859 6.808829 ACACATGTGAAAAAGACATCAATGT 58.191 32.000 31.94 0.06 45.16 2.71
2319 3862 8.111511 ATTGCACACATGTGAAAAAGACATCAA 61.112 33.333 31.94 16.94 45.87 2.57
2321 3864 5.693104 ATTGCACACATGTGAAAAAGACATC 59.307 36.000 31.94 8.27 45.87 3.06
2322 3865 5.603596 ATTGCACACATGTGAAAAAGACAT 58.396 33.333 31.94 3.24 45.87 3.06
2323 3866 5.008619 ATTGCACACATGTGAAAAAGACA 57.991 34.783 31.94 14.60 45.87 3.41
2324 3867 5.971895 AATTGCACACATGTGAAAAAGAC 57.028 34.783 31.94 12.40 45.87 3.01
2325 3868 6.981762 AAAATTGCACACATGTGAAAAAGA 57.018 29.167 31.94 12.40 45.87 2.52
2326 3869 7.242079 TGAAAAATTGCACACATGTGAAAAAG 58.758 30.769 31.94 15.69 45.87 2.27
2327 3870 7.137490 TGAAAAATTGCACACATGTGAAAAA 57.863 28.000 31.94 20.41 45.87 1.94
2335 3878 6.922247 TTTGTCATGAAAAATTGCACACAT 57.078 29.167 6.98 0.00 0.00 3.21
2336 3879 6.732531 TTTTGTCATGAAAAATTGCACACA 57.267 29.167 11.86 0.00 0.00 3.72
2337 3880 6.633634 CCATTTTGTCATGAAAAATTGCACAC 59.366 34.615 20.66 0.00 35.55 3.82
2338 3881 6.726230 CCATTTTGTCATGAAAAATTGCACA 58.274 32.000 20.66 4.66 35.55 4.57
2339 3882 5.626132 GCCATTTTGTCATGAAAAATTGCAC 59.374 36.000 25.87 18.00 41.62 4.57
2340 3883 5.298527 TGCCATTTTGTCATGAAAAATTGCA 59.701 32.000 27.52 27.52 45.64 4.08
2341 3884 5.759963 TGCCATTTTGTCATGAAAAATTGC 58.240 33.333 25.09 25.09 42.01 3.56
2342 3885 7.269511 CGAATGCCATTTTGTCATGAAAAATTG 59.730 33.333 19.70 19.70 35.55 2.32
2343 3886 7.041235 ACGAATGCCATTTTGTCATGAAAAATT 60.041 29.630 11.86 5.96 35.55 1.82
2345 3888 5.757320 ACGAATGCCATTTTGTCATGAAAAA 59.243 32.000 6.98 6.98 0.00 1.94
2346 3889 5.177142 CACGAATGCCATTTTGTCATGAAAA 59.823 36.000 0.00 0.00 0.00 2.29
2347 3890 4.685165 CACGAATGCCATTTTGTCATGAAA 59.315 37.500 0.00 0.00 0.00 2.69
2349 3892 3.835779 CACGAATGCCATTTTGTCATGA 58.164 40.909 0.00 0.00 0.00 3.07
2350 3893 2.346244 GCACGAATGCCATTTTGTCATG 59.654 45.455 0.00 0.00 46.97 3.07
2352 3895 2.063156 GCACGAATGCCATTTTGTCA 57.937 45.000 0.00 0.00 46.97 3.58
2364 3907 1.079819 CACCGAGACCTGCACGAAT 60.080 57.895 0.00 0.00 31.96 3.34
2365 3908 1.740332 TTCACCGAGACCTGCACGAA 61.740 55.000 0.00 0.00 31.96 3.85
2366 3909 1.740332 TTTCACCGAGACCTGCACGA 61.740 55.000 0.00 0.00 31.96 4.35
2367 3910 0.878523 TTTTCACCGAGACCTGCACG 60.879 55.000 0.00 0.00 0.00 5.34
2369 3912 3.790691 TTTTTCACCGAGACCTGCA 57.209 47.368 0.00 0.00 0.00 4.41
2385 3928 6.917217 TTTTGGAGCATCGATTTTGTTTTT 57.083 29.167 0.00 0.00 34.37 1.94
2386 3929 7.872483 AGTATTTTGGAGCATCGATTTTGTTTT 59.128 29.630 0.00 0.00 34.37 2.43
2387 3930 7.378181 AGTATTTTGGAGCATCGATTTTGTTT 58.622 30.769 0.00 0.00 34.37 2.83
2388 3931 6.924111 AGTATTTTGGAGCATCGATTTTGTT 58.076 32.000 0.00 0.00 34.37 2.83
2390 3933 6.473455 GGAAGTATTTTGGAGCATCGATTTTG 59.527 38.462 0.00 0.00 34.37 2.44
2391 3934 6.152661 TGGAAGTATTTTGGAGCATCGATTTT 59.847 34.615 0.00 0.00 34.37 1.82
2393 3936 5.192927 TGGAAGTATTTTGGAGCATCGATT 58.807 37.500 0.00 0.00 34.37 3.34
2394 3937 4.780815 TGGAAGTATTTTGGAGCATCGAT 58.219 39.130 0.00 0.00 34.37 3.59
2396 3939 4.963276 TTGGAAGTATTTTGGAGCATCG 57.037 40.909 0.00 0.00 34.37 3.84
2397 3940 6.928492 TGTTTTTGGAAGTATTTTGGAGCATC 59.072 34.615 0.00 0.00 0.00 3.91
2398 3941 6.825610 TGTTTTTGGAAGTATTTTGGAGCAT 58.174 32.000 0.00 0.00 0.00 3.79
2399 3942 6.127196 ACTGTTTTTGGAAGTATTTTGGAGCA 60.127 34.615 0.00 0.00 0.00 4.26
2400 3943 6.280643 ACTGTTTTTGGAAGTATTTTGGAGC 58.719 36.000 0.00 0.00 0.00 4.70
2401 3944 8.716646 AAACTGTTTTTGGAAGTATTTTGGAG 57.283 30.769 0.00 0.00 0.00 3.86
2402 3945 9.508642 AAAAACTGTTTTTGGAAGTATTTTGGA 57.491 25.926 25.58 0.00 41.04 3.53
2450 3993 2.673775 TGTGGAGGCCTCATCAAAAA 57.326 45.000 33.29 10.07 0.00 1.94
2452 3995 2.449464 CATTGTGGAGGCCTCATCAAA 58.551 47.619 33.29 20.83 31.60 2.69
2453 3996 1.956636 GCATTGTGGAGGCCTCATCAA 60.957 52.381 33.29 31.44 0.00 2.57
2454 3997 0.394762 GCATTGTGGAGGCCTCATCA 60.395 55.000 33.29 26.09 0.00 3.07
2455 3998 2.412605 GCATTGTGGAGGCCTCATC 58.587 57.895 33.29 23.95 0.00 2.92
2456 3999 4.672251 GCATTGTGGAGGCCTCAT 57.328 55.556 33.29 16.02 0.00 2.90
2461 4004 0.896923 TGAAATGGCATTGTGGAGGC 59.103 50.000 14.47 0.00 0.00 4.70
2462 4005 2.761767 TGATGAAATGGCATTGTGGAGG 59.238 45.455 14.47 0.00 0.00 4.30
2463 4006 3.732774 CGTGATGAAATGGCATTGTGGAG 60.733 47.826 14.47 0.00 0.00 3.86
2464 4007 2.164017 CGTGATGAAATGGCATTGTGGA 59.836 45.455 14.47 0.00 0.00 4.02
2465 4008 2.164017 TCGTGATGAAATGGCATTGTGG 59.836 45.455 14.47 0.00 0.00 4.17
2466 4009 3.490800 TCGTGATGAAATGGCATTGTG 57.509 42.857 14.47 0.00 0.00 3.33
2467 4010 4.517952 TTTCGTGATGAAATGGCATTGT 57.482 36.364 14.47 4.07 41.59 2.71
2468 4011 6.411630 AATTTTCGTGATGAAATGGCATTG 57.588 33.333 14.47 0.00 45.62 2.82
2470 4013 5.163834 GCAAATTTTCGTGATGAAATGGCAT 60.164 36.000 0.02 0.00 45.62 4.40
2471 4014 4.152045 GCAAATTTTCGTGATGAAATGGCA 59.848 37.500 0.02 0.00 45.62 4.92
2472 4015 4.152045 TGCAAATTTTCGTGATGAAATGGC 59.848 37.500 0.02 3.85 45.62 4.40
2473 4016 5.842619 TGCAAATTTTCGTGATGAAATGG 57.157 34.783 0.02 0.00 45.62 3.16
2474 4017 5.730802 GCATGCAAATTTTCGTGATGAAATG 59.269 36.000 14.21 0.00 45.62 2.32
2475 4018 5.408909 TGCATGCAAATTTTCGTGATGAAAT 59.591 32.000 20.30 0.00 45.62 2.17
2476 4019 4.748600 TGCATGCAAATTTTCGTGATGAAA 59.251 33.333 20.30 0.00 44.70 2.69
2477 4020 4.304939 TGCATGCAAATTTTCGTGATGAA 58.695 34.783 20.30 0.00 33.85 2.57
2478 4021 3.910648 TGCATGCAAATTTTCGTGATGA 58.089 36.364 20.30 0.00 0.00 2.92
2479 4022 4.092237 ACATGCATGCAAATTTTCGTGATG 59.908 37.500 26.68 15.68 0.00 3.07
2480 4023 4.092237 CACATGCATGCAAATTTTCGTGAT 59.908 37.500 26.68 0.00 0.00 3.06
2482 4025 3.184783 ACACATGCATGCAAATTTTCGTG 59.815 39.130 26.68 21.82 0.00 4.35
2483 4026 3.391965 ACACATGCATGCAAATTTTCGT 58.608 36.364 26.68 11.94 0.00 3.85
2485 4028 6.072733 GTGTTACACATGCATGCAAATTTTC 58.927 36.000 26.68 12.88 34.08 2.29
2487 4030 5.055144 TGTGTTACACATGCATGCAAATTT 58.945 33.333 26.68 11.28 39.62 1.82
2488 4031 4.629092 TGTGTTACACATGCATGCAAATT 58.371 34.783 26.68 11.83 39.62 1.82
2489 4032 4.254402 TGTGTTACACATGCATGCAAAT 57.746 36.364 26.68 13.15 39.62 2.32
2490 4033 3.722728 TGTGTTACACATGCATGCAAA 57.277 38.095 26.68 11.35 39.62 3.68
2508 4051 6.492007 TTTTTGCAACAAACATTGATGTGT 57.508 29.167 0.00 0.00 41.61 3.72
2564 4283 7.708752 CACCCTTTGCTACAGTAAAATCAAAAA 59.291 33.333 0.00 0.00 0.00 1.94
2565 4284 7.206687 CACCCTTTGCTACAGTAAAATCAAAA 58.793 34.615 0.00 0.00 0.00 2.44
2566 4285 6.744112 CACCCTTTGCTACAGTAAAATCAAA 58.256 36.000 0.00 0.00 0.00 2.69
2567 4286 6.325919 CACCCTTTGCTACAGTAAAATCAA 57.674 37.500 0.00 0.00 0.00 2.57
2582 4301 0.524862 GAGCTCACATGCACCCTTTG 59.475 55.000 9.40 0.00 34.99 2.77
2583 4302 0.957395 CGAGCTCACATGCACCCTTT 60.957 55.000 15.40 0.00 34.99 3.11
2586 4305 1.812922 CTCGAGCTCACATGCACCC 60.813 63.158 15.40 0.00 34.99 4.61
2587 4306 2.459442 GCTCGAGCTCACATGCACC 61.459 63.158 29.88 0.00 38.21 5.01
2588 4307 3.088044 GCTCGAGCTCACATGCAC 58.912 61.111 29.88 0.00 38.21 4.57
2595 4314 7.226480 CATGGAGTATGTTAGCTCGAGCTCA 62.226 48.000 41.34 32.65 40.87 4.26
2596 4315 4.850487 CATGGAGTATGTTAGCTCGAGCTC 60.850 50.000 41.34 28.31 40.87 4.09
2597 4316 3.005261 CATGGAGTATGTTAGCTCGAGCT 59.995 47.826 39.29 39.29 42.13 4.09
2598 4317 3.312828 CATGGAGTATGTTAGCTCGAGC 58.687 50.000 30.01 30.01 35.10 5.03
2611 4330 9.573166 CCAATAAAGGATGATTAACATGGAGTA 57.427 33.333 0.00 0.00 39.56 2.59
2612 4331 8.281531 TCCAATAAAGGATGATTAACATGGAGT 58.718 33.333 0.00 0.00 39.56 3.85
2613 4332 8.696043 TCCAATAAAGGATGATTAACATGGAG 57.304 34.615 0.00 0.00 39.56 3.86
2614 4333 8.501904 TCTCCAATAAAGGATGATTAACATGGA 58.498 33.333 0.00 0.00 39.56 3.41
2615 4334 8.571336 GTCTCCAATAAAGGATGATTAACATGG 58.429 37.037 0.00 0.00 39.56 3.66
2616 4335 8.571336 GGTCTCCAATAAAGGATGATTAACATG 58.429 37.037 0.00 0.00 39.56 3.21
2617 4336 8.506083 AGGTCTCCAATAAAGGATGATTAACAT 58.494 33.333 0.00 0.00 42.47 2.71
2618 4337 7.872138 AGGTCTCCAATAAAGGATGATTAACA 58.128 34.615 0.00 0.00 36.99 2.41
2619 4338 8.384607 GAGGTCTCCAATAAAGGATGATTAAC 57.615 38.462 0.00 0.00 36.99 2.01
2637 4396 5.617087 GCAGAAAAACGTTATTGGAGGTCTC 60.617 44.000 0.00 0.00 0.00 3.36
2651 4410 7.201182 CGTTCATTCTCAATAAGCAGAAAAACG 60.201 37.037 13.61 13.61 40.94 3.60
2667 4426 0.672401 TGGGCGAACCGTTCATTCTC 60.672 55.000 11.74 0.88 44.64 2.87
2668 4427 0.035439 ATGGGCGAACCGTTCATTCT 60.035 50.000 11.74 0.00 44.64 2.40
2678 4437 0.741221 GTCAGTGAGGATGGGCGAAC 60.741 60.000 0.00 0.00 0.00 3.95
2684 4443 1.415659 GGATGAGGTCAGTGAGGATGG 59.584 57.143 0.00 0.00 0.00 3.51
2685 4444 1.415659 GGGATGAGGTCAGTGAGGATG 59.584 57.143 0.00 0.00 0.00 3.51
2687 4446 0.325671 GGGGATGAGGTCAGTGAGGA 60.326 60.000 0.00 0.00 0.00 3.71
2724 4483 4.159557 AGAGATAAAGAGAGCCAGGGATC 58.840 47.826 0.00 0.00 0.00 3.36
2725 4484 4.140710 AGAGAGATAAAGAGAGCCAGGGAT 60.141 45.833 0.00 0.00 0.00 3.85
2728 4487 4.473444 AGAGAGAGATAAAGAGAGCCAGG 58.527 47.826 0.00 0.00 0.00 4.45
2731 4490 4.024048 CGTGAGAGAGAGATAAAGAGAGCC 60.024 50.000 0.00 0.00 0.00 4.70
2739 4498 3.196463 GTCCGTCGTGAGAGAGAGATAA 58.804 50.000 0.00 0.00 43.49 1.75
2741 4500 1.658994 GTCCGTCGTGAGAGAGAGAT 58.341 55.000 0.00 0.00 43.49 2.75
2757 4530 0.751452 GGGTCCACCTTCTATCGTCC 59.249 60.000 0.00 0.00 35.85 4.79
2826 4790 4.451096 GGCGTGAGTCTTCAAATTTGTCTA 59.549 41.667 17.47 4.50 34.49 2.59
2832 4796 1.878953 ACGGCGTGAGTCTTCAAATT 58.121 45.000 13.76 0.00 34.49 1.82
2838 4802 2.961526 ATTCATACGGCGTGAGTCTT 57.038 45.000 24.86 0.00 0.00 3.01
2862 4826 2.289010 CCGCCTTCAAAGCCTGATTTTT 60.289 45.455 0.00 0.00 32.78 1.94
2923 4890 5.803461 GTGAGTATTAACGAGTACACATGCA 59.197 40.000 0.00 0.00 0.00 3.96
2937 4904 2.378445 TGCGCTGCAGTGAGTATTAA 57.622 45.000 30.83 3.63 33.32 1.40
2943 4910 4.440987 CGCTTGCGCTGCAGTGAG 62.441 66.667 30.83 20.00 40.61 3.51
2948 4915 4.326766 GAAACCGCTTGCGCTGCA 62.327 61.111 21.56 0.00 36.47 4.41
2950 4917 1.573829 TTAGGAAACCGCTTGCGCTG 61.574 55.000 9.73 2.28 0.00 5.18
2951 4918 1.298859 CTTAGGAAACCGCTTGCGCT 61.299 55.000 9.73 3.61 0.00 5.92
2954 4921 0.803117 GGTCTTAGGAAACCGCTTGC 59.197 55.000 0.00 0.00 0.00 4.01
2970 4937 1.939974 TGTGAATAGCGCAGATGGTC 58.060 50.000 11.47 0.00 32.23 4.02
2994 4961 1.399727 CGGTTGTCAGGAACGAATTGC 60.400 52.381 0.00 0.00 0.00 3.56
2995 4962 1.399727 GCGGTTGTCAGGAACGAATTG 60.400 52.381 0.00 0.00 0.00 2.32
2996 4963 0.872388 GCGGTTGTCAGGAACGAATT 59.128 50.000 0.00 0.00 0.00 2.17
2997 4964 0.250124 TGCGGTTGTCAGGAACGAAT 60.250 50.000 0.00 0.00 0.00 3.34
2998 4965 0.250124 ATGCGGTTGTCAGGAACGAA 60.250 50.000 0.00 0.00 0.00 3.85
3001 4968 1.210155 GCATGCGGTTGTCAGGAAC 59.790 57.895 0.00 0.00 0.00 3.62
3002 4969 0.821301 TTGCATGCGGTTGTCAGGAA 60.821 50.000 14.09 0.00 0.00 3.36
3003 4970 0.608856 ATTGCATGCGGTTGTCAGGA 60.609 50.000 14.09 0.00 0.00 3.86
3004 4971 0.457166 CATTGCATGCGGTTGTCAGG 60.457 55.000 14.09 0.00 0.00 3.86
3005 4972 0.522626 TCATTGCATGCGGTTGTCAG 59.477 50.000 14.09 0.00 0.00 3.51
3006 4973 1.175654 ATCATTGCATGCGGTTGTCA 58.824 45.000 14.09 0.00 0.00 3.58
3007 4974 2.282701 AATCATTGCATGCGGTTGTC 57.717 45.000 14.09 0.00 0.00 3.18
3009 4976 2.737783 ACAAAATCATTGCATGCGGTTG 59.262 40.909 14.09 10.40 0.00 3.77
3011 4978 2.747396 ACAAAATCATTGCATGCGGT 57.253 40.000 14.09 0.25 0.00 5.68
3012 4979 2.859538 GGTACAAAATCATTGCATGCGG 59.140 45.455 14.09 5.30 0.00 5.69
3013 4980 2.531103 CGGTACAAAATCATTGCATGCG 59.469 45.455 14.09 0.00 0.00 4.73
3015 4982 4.353737 CTCCGGTACAAAATCATTGCATG 58.646 43.478 0.00 0.00 0.00 4.06
3016 4983 3.381272 CCTCCGGTACAAAATCATTGCAT 59.619 43.478 0.00 0.00 0.00 3.96
3017 4984 2.752354 CCTCCGGTACAAAATCATTGCA 59.248 45.455 0.00 0.00 0.00 4.08
3018 4985 2.479560 GCCTCCGGTACAAAATCATTGC 60.480 50.000 0.00 0.00 0.00 3.56
3019 4986 2.223249 CGCCTCCGGTACAAAATCATTG 60.223 50.000 0.00 0.00 0.00 2.82
3020 4987 2.014128 CGCCTCCGGTACAAAATCATT 58.986 47.619 0.00 0.00 0.00 2.57
3022 4989 3.146783 CGCCTCCGGTACAAAATCA 57.853 52.632 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.