Multiple sequence alignment - TraesCS2D01G225500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G225500 chr2D 100.000 3779 0 0 1 3779 193287544 193291322 0.000000e+00 6979.0
1 TraesCS2D01G225500 chr2D 99.142 233 2 0 1 233 193275034 193275266 1.620000e-113 420.0
2 TraesCS2D01G225500 chr2D 96.996 233 7 0 1 233 111738608 111738840 3.540000e-105 392.0
3 TraesCS2D01G225500 chr2D 96.996 233 7 0 1 233 199278467 199278699 3.540000e-105 392.0
4 TraesCS2D01G225500 chr2A 91.962 3185 129 47 317 3443 207475992 207479107 0.000000e+00 4346.0
5 TraesCS2D01G225500 chr2B 93.299 2895 103 39 316 3181 249416187 249419019 0.000000e+00 4187.0
6 TraesCS2D01G225500 chr2B 92.238 554 33 6 3195 3745 249419207 249419753 0.000000e+00 776.0
7 TraesCS2D01G225500 chr5D 97.425 233 6 0 1 233 363869239 363869007 7.610000e-107 398.0
8 TraesCS2D01G225500 chr4D 96.996 233 7 0 1 233 48331202 48331434 3.540000e-105 392.0
9 TraesCS2D01G225500 chr4D 96.567 233 8 0 1 233 45130234 45130466 1.650000e-103 387.0
10 TraesCS2D01G225500 chr4D 94.378 249 13 1 1 248 374379758 374380006 7.660000e-102 381.0
11 TraesCS2D01G225500 chr4D 87.549 257 31 1 3524 3779 477868857 477869113 2.850000e-76 296.0
12 TraesCS2D01G225500 chr1D 95.868 242 10 0 1 242 463906122 463905881 3.540000e-105 392.0
13 TraesCS2D01G225500 chr6D 95.851 241 9 1 1 241 365313625 365313864 4.580000e-104 388.0
14 TraesCS2D01G225500 chr3D 84.049 326 50 2 3456 3779 47198073 47197748 2.830000e-81 313.0
15 TraesCS2D01G225500 chr3D 80.645 279 45 8 3503 3779 156640924 156640653 1.380000e-49 207.0
16 TraesCS2D01G225500 chr3B 83.129 326 49 6 3456 3779 73744036 73743715 3.690000e-75 292.0
17 TraesCS2D01G225500 chr3B 84.058 69 11 0 3456 3524 536050341 536050409 2.440000e-07 67.6
18 TraesCS2D01G225500 chr5A 82.569 327 51 6 3456 3779 593740572 593740249 2.220000e-72 283.0
19 TraesCS2D01G225500 chr4A 84.646 254 37 2 3528 3779 616615557 616615304 6.270000e-63 252.0
20 TraesCS2D01G225500 chr6A 81.024 332 47 12 3456 3779 606569750 606569427 2.250000e-62 250.0
21 TraesCS2D01G225500 chr7D 78.144 334 59 12 3452 3779 585376978 585377303 2.300000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G225500 chr2D 193287544 193291322 3778 False 6979.0 6979 100.0000 1 3779 1 chr2D.!!$F3 3778
1 TraesCS2D01G225500 chr2A 207475992 207479107 3115 False 4346.0 4346 91.9620 317 3443 1 chr2A.!!$F1 3126
2 TraesCS2D01G225500 chr2B 249416187 249419753 3566 False 2481.5 4187 92.7685 316 3745 2 chr2B.!!$F1 3429

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.107848 CCCGACCGGCTCATAAAAGT 60.108 55.0 0.00 0.00 0.00 2.66 F
1253 1281 0.107654 ACTGCATCGCTTAACCCTCC 60.108 55.0 0.00 0.00 0.00 4.30 F
1708 1749 0.175760 TACTTCTGTGCATCGGAGGC 59.824 55.0 7.84 7.84 32.62 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1888 1929 0.394899 GCTGGAGCAGGGCAATAGTT 60.395 55.0 0.00 0.0 41.59 2.24 R
2192 2233 0.167908 CGCGCTTTTAGTCATGGCAA 59.832 50.0 5.56 0.0 0.00 4.52 R
3352 3607 0.393820 CCACAAAATTGCACAGGCCT 59.606 50.0 0.00 0.0 40.13 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.045242 TCTCAGAGTCCCGACCGG 60.045 66.667 0.00 0.00 0.00 5.28
18 19 3.827898 CTCAGAGTCCCGACCGGC 61.828 72.222 0.00 0.00 0.00 6.13
19 20 4.361971 TCAGAGTCCCGACCGGCT 62.362 66.667 0.00 0.00 0.00 5.52
20 21 3.827898 CAGAGTCCCGACCGGCTC 61.828 72.222 0.00 5.54 35.92 4.70
21 22 4.361971 AGAGTCCCGACCGGCTCA 62.362 66.667 0.00 0.00 37.29 4.26
22 23 3.148279 GAGTCCCGACCGGCTCAT 61.148 66.667 0.00 0.00 35.81 2.90
23 24 1.826921 GAGTCCCGACCGGCTCATA 60.827 63.158 0.00 0.00 35.81 2.15
24 25 1.380785 AGTCCCGACCGGCTCATAA 60.381 57.895 0.00 0.00 0.00 1.90
25 26 0.974010 AGTCCCGACCGGCTCATAAA 60.974 55.000 0.00 0.00 0.00 1.40
26 27 0.108041 GTCCCGACCGGCTCATAAAA 60.108 55.000 0.00 0.00 0.00 1.52
27 28 0.177141 TCCCGACCGGCTCATAAAAG 59.823 55.000 0.00 0.00 0.00 2.27
28 29 0.107848 CCCGACCGGCTCATAAAAGT 60.108 55.000 0.00 0.00 0.00 2.66
29 30 1.006832 CCGACCGGCTCATAAAAGTG 58.993 55.000 0.00 0.00 0.00 3.16
30 31 1.674817 CCGACCGGCTCATAAAAGTGT 60.675 52.381 0.00 0.00 0.00 3.55
31 32 1.659098 CGACCGGCTCATAAAAGTGTC 59.341 52.381 0.00 0.00 0.00 3.67
32 33 2.007608 GACCGGCTCATAAAAGTGTCC 58.992 52.381 0.00 0.00 0.00 4.02
33 34 1.006832 CCGGCTCATAAAAGTGTCCG 58.993 55.000 0.00 0.00 36.68 4.79
34 35 1.006832 CGGCTCATAAAAGTGTCCGG 58.993 55.000 0.00 0.00 34.89 5.14
35 36 0.733150 GGCTCATAAAAGTGTCCGGC 59.267 55.000 0.00 0.00 0.00 6.13
36 37 1.679032 GGCTCATAAAAGTGTCCGGCT 60.679 52.381 0.00 0.00 0.00 5.52
37 38 1.666189 GCTCATAAAAGTGTCCGGCTC 59.334 52.381 0.00 0.00 0.00 4.70
38 39 1.927174 CTCATAAAAGTGTCCGGCTCG 59.073 52.381 0.00 0.00 0.00 5.03
49 50 3.279183 CGGCTCGGACTCTCAACT 58.721 61.111 0.00 0.00 0.00 3.16
50 51 2.478989 CGGCTCGGACTCTCAACTA 58.521 57.895 0.00 0.00 0.00 2.24
51 52 1.025812 CGGCTCGGACTCTCAACTAT 58.974 55.000 0.00 0.00 0.00 2.12
52 53 1.002251 CGGCTCGGACTCTCAACTATC 60.002 57.143 0.00 0.00 0.00 2.08
53 54 1.338655 GGCTCGGACTCTCAACTATCC 59.661 57.143 0.00 0.00 0.00 2.59
54 55 2.303175 GCTCGGACTCTCAACTATCCT 58.697 52.381 0.00 0.00 0.00 3.24
55 56 2.691011 GCTCGGACTCTCAACTATCCTT 59.309 50.000 0.00 0.00 0.00 3.36
56 57 3.490078 GCTCGGACTCTCAACTATCCTTG 60.490 52.174 0.00 0.00 0.00 3.61
57 58 2.427453 TCGGACTCTCAACTATCCTTGC 59.573 50.000 0.00 0.00 0.00 4.01
58 59 2.482142 CGGACTCTCAACTATCCTTGCC 60.482 54.545 0.00 0.00 0.00 4.52
59 60 2.769095 GGACTCTCAACTATCCTTGCCT 59.231 50.000 0.00 0.00 0.00 4.75
60 61 3.198853 GGACTCTCAACTATCCTTGCCTT 59.801 47.826 0.00 0.00 0.00 4.35
61 62 4.406003 GGACTCTCAACTATCCTTGCCTTA 59.594 45.833 0.00 0.00 0.00 2.69
62 63 5.346181 ACTCTCAACTATCCTTGCCTTAC 57.654 43.478 0.00 0.00 0.00 2.34
63 64 4.777896 ACTCTCAACTATCCTTGCCTTACA 59.222 41.667 0.00 0.00 0.00 2.41
64 65 5.086104 TCTCAACTATCCTTGCCTTACAC 57.914 43.478 0.00 0.00 0.00 2.90
65 66 4.777896 TCTCAACTATCCTTGCCTTACACT 59.222 41.667 0.00 0.00 0.00 3.55
66 67 5.955959 TCTCAACTATCCTTGCCTTACACTA 59.044 40.000 0.00 0.00 0.00 2.74
67 68 5.974108 TCAACTATCCTTGCCTTACACTAC 58.026 41.667 0.00 0.00 0.00 2.73
68 69 5.482526 TCAACTATCCTTGCCTTACACTACA 59.517 40.000 0.00 0.00 0.00 2.74
69 70 6.014070 TCAACTATCCTTGCCTTACACTACAA 60.014 38.462 0.00 0.00 0.00 2.41
70 71 5.978814 ACTATCCTTGCCTTACACTACAAG 58.021 41.667 0.00 0.00 39.35 3.16
71 72 4.910458 ATCCTTGCCTTACACTACAAGT 57.090 40.909 0.00 0.00 38.24 3.16
72 73 4.699925 TCCTTGCCTTACACTACAAGTT 57.300 40.909 0.00 0.00 38.24 2.66
73 74 4.638304 TCCTTGCCTTACACTACAAGTTC 58.362 43.478 0.00 0.00 38.24 3.01
74 75 4.347000 TCCTTGCCTTACACTACAAGTTCT 59.653 41.667 0.00 0.00 38.24 3.01
75 76 5.541101 TCCTTGCCTTACACTACAAGTTCTA 59.459 40.000 0.00 0.00 38.24 2.10
76 77 5.638234 CCTTGCCTTACACTACAAGTTCTAC 59.362 44.000 0.00 0.00 38.24 2.59
77 78 5.143376 TGCCTTACACTACAAGTTCTACC 57.857 43.478 0.00 0.00 0.00 3.18
78 79 4.589798 TGCCTTACACTACAAGTTCTACCA 59.410 41.667 0.00 0.00 0.00 3.25
79 80 5.247564 TGCCTTACACTACAAGTTCTACCAT 59.752 40.000 0.00 0.00 0.00 3.55
80 81 6.438108 TGCCTTACACTACAAGTTCTACCATA 59.562 38.462 0.00 0.00 0.00 2.74
81 82 7.038870 TGCCTTACACTACAAGTTCTACCATAA 60.039 37.037 0.00 0.00 0.00 1.90
82 83 7.277319 GCCTTACACTACAAGTTCTACCATAAC 59.723 40.741 0.00 0.00 0.00 1.89
83 84 8.308931 CCTTACACTACAAGTTCTACCATAACA 58.691 37.037 0.00 0.00 0.00 2.41
84 85 9.701098 CTTACACTACAAGTTCTACCATAACAA 57.299 33.333 0.00 0.00 0.00 2.83
86 87 8.547967 ACACTACAAGTTCTACCATAACAATG 57.452 34.615 0.00 0.00 0.00 2.82
87 88 8.372459 ACACTACAAGTTCTACCATAACAATGA 58.628 33.333 0.00 0.00 0.00 2.57
88 89 9.383519 CACTACAAGTTCTACCATAACAATGAT 57.616 33.333 0.00 0.00 0.00 2.45
89 90 9.959721 ACTACAAGTTCTACCATAACAATGATT 57.040 29.630 0.00 0.00 0.00 2.57
92 93 9.733556 ACAAGTTCTACCATAACAATGATTGTA 57.266 29.630 11.70 0.94 44.59 2.41
95 96 9.959721 AGTTCTACCATAACAATGATTGTAACT 57.040 29.630 11.70 11.34 44.59 2.24
98 99 9.524106 TCTACCATAACAATGATTGTAACTACG 57.476 33.333 11.70 0.54 44.59 3.51
99 100 7.548196 ACCATAACAATGATTGTAACTACGG 57.452 36.000 11.70 5.26 44.59 4.02
100 101 6.540914 ACCATAACAATGATTGTAACTACGGG 59.459 38.462 11.70 8.40 44.59 5.28
101 102 4.957759 AACAATGATTGTAACTACGGGC 57.042 40.909 11.70 0.00 44.59 6.13
102 103 3.275999 ACAATGATTGTAACTACGGGCC 58.724 45.455 9.41 0.00 43.27 5.80
103 104 3.054655 ACAATGATTGTAACTACGGGCCT 60.055 43.478 9.41 0.00 43.27 5.19
104 105 3.926058 ATGATTGTAACTACGGGCCTT 57.074 42.857 0.84 0.00 0.00 4.35
105 106 5.120399 CAATGATTGTAACTACGGGCCTTA 58.880 41.667 0.84 0.00 0.00 2.69
106 107 4.822685 TGATTGTAACTACGGGCCTTAA 57.177 40.909 0.84 0.00 0.00 1.85
107 108 4.761975 TGATTGTAACTACGGGCCTTAAG 58.238 43.478 0.84 0.00 0.00 1.85
108 109 2.678471 TGTAACTACGGGCCTTAAGC 57.322 50.000 0.84 0.00 42.60 3.09
118 119 3.249687 GCCTTAAGCCATATCCGGG 57.750 57.895 0.00 0.00 34.35 5.73
119 120 0.400594 GCCTTAAGCCATATCCGGGT 59.599 55.000 0.00 0.00 38.81 5.28
120 121 1.610886 GCCTTAAGCCATATCCGGGTC 60.611 57.143 0.00 0.00 35.11 4.46
121 122 1.978580 CCTTAAGCCATATCCGGGTCT 59.021 52.381 0.00 0.00 35.11 3.85
122 123 2.372172 CCTTAAGCCATATCCGGGTCTT 59.628 50.000 0.00 0.00 35.11 3.01
123 124 3.581332 CCTTAAGCCATATCCGGGTCTTA 59.419 47.826 0.00 0.00 35.11 2.10
124 125 4.041198 CCTTAAGCCATATCCGGGTCTTAA 59.959 45.833 0.00 3.83 35.11 1.85
125 126 5.455612 CCTTAAGCCATATCCGGGTCTTAAA 60.456 44.000 0.00 0.00 35.55 1.52
126 127 3.487120 AGCCATATCCGGGTCTTAAAC 57.513 47.619 0.00 0.00 27.85 2.01
137 138 3.868757 GGTCTTAAACCCATCTTTGGC 57.131 47.619 0.00 0.00 42.85 4.52
138 139 2.496070 GGTCTTAAACCCATCTTTGGCC 59.504 50.000 0.00 0.00 42.85 5.36
139 140 2.496070 GTCTTAAACCCATCTTTGGCCC 59.504 50.000 0.00 0.00 42.15 5.80
140 141 2.110899 TCTTAAACCCATCTTTGGCCCA 59.889 45.455 0.00 0.00 42.15 5.36
141 142 1.931635 TAAACCCATCTTTGGCCCAC 58.068 50.000 0.00 0.00 42.15 4.61
142 143 0.835971 AAACCCATCTTTGGCCCACC 60.836 55.000 0.00 0.00 42.15 4.61
143 144 2.755469 CCCATCTTTGGCCCACCG 60.755 66.667 0.00 0.00 42.15 4.94
144 145 2.035626 CCATCTTTGGCCCACCGT 59.964 61.111 0.00 0.00 39.70 4.83
145 146 2.046285 CCATCTTTGGCCCACCGTC 61.046 63.158 0.00 0.00 39.70 4.79
146 147 1.002134 CATCTTTGGCCCACCGTCT 60.002 57.895 0.00 0.00 39.70 4.18
147 148 0.609131 CATCTTTGGCCCACCGTCTT 60.609 55.000 0.00 0.00 39.70 3.01
148 149 0.322546 ATCTTTGGCCCACCGTCTTC 60.323 55.000 0.00 0.00 39.70 2.87
149 150 1.228124 CTTTGGCCCACCGTCTTCA 60.228 57.895 0.00 0.00 39.70 3.02
150 151 0.821711 CTTTGGCCCACCGTCTTCAA 60.822 55.000 0.00 0.00 39.70 2.69
151 152 0.821711 TTTGGCCCACCGTCTTCAAG 60.822 55.000 0.00 0.00 39.70 3.02
152 153 3.056328 GGCCCACCGTCTTCAAGC 61.056 66.667 0.00 0.00 0.00 4.01
153 154 2.032681 GCCCACCGTCTTCAAGCT 59.967 61.111 0.00 0.00 0.00 3.74
154 155 1.600916 GCCCACCGTCTTCAAGCTT 60.601 57.895 0.00 0.00 0.00 3.74
155 156 1.856265 GCCCACCGTCTTCAAGCTTG 61.856 60.000 20.81 20.81 0.00 4.01
156 157 1.237285 CCCACCGTCTTCAAGCTTGG 61.237 60.000 25.73 11.49 0.00 3.61
157 158 1.576421 CACCGTCTTCAAGCTTGGC 59.424 57.895 25.73 12.64 0.00 4.52
158 159 1.961277 ACCGTCTTCAAGCTTGGCG 60.961 57.895 25.73 21.68 0.00 5.69
159 160 2.174349 CGTCTTCAAGCTTGGCGC 59.826 61.111 25.73 12.63 39.57 6.53
160 161 2.563427 GTCTTCAAGCTTGGCGCC 59.437 61.111 25.73 22.73 40.39 6.53
161 162 2.112928 TCTTCAAGCTTGGCGCCA 59.887 55.556 29.03 29.03 40.39 5.69
162 163 1.968017 TCTTCAAGCTTGGCGCCAG 60.968 57.895 30.75 23.45 40.39 4.85
163 164 2.985282 TTCAAGCTTGGCGCCAGG 60.985 61.111 32.52 32.52 40.39 4.45
169 170 3.437795 CTTGGCGCCAGGCTTCTG 61.438 66.667 30.75 10.86 44.18 3.02
177 178 3.805267 CAGGCTTCTGGCGATGAC 58.195 61.111 0.00 0.00 44.18 3.06
178 179 1.817099 CAGGCTTCTGGCGATGACC 60.817 63.158 0.00 0.00 44.18 4.02
179 180 2.268920 GGCTTCTGGCGATGACCA 59.731 61.111 0.00 0.00 42.94 4.02
180 181 1.153086 GGCTTCTGGCGATGACCAT 60.153 57.895 0.00 0.00 42.94 3.55
181 182 0.749454 GGCTTCTGGCGATGACCATT 60.749 55.000 0.00 0.00 42.94 3.16
182 183 1.475034 GGCTTCTGGCGATGACCATTA 60.475 52.381 0.00 0.00 42.94 1.90
183 184 2.498167 GCTTCTGGCGATGACCATTAT 58.502 47.619 0.00 0.00 39.54 1.28
184 185 2.225019 GCTTCTGGCGATGACCATTATG 59.775 50.000 0.00 0.00 39.54 1.90
185 186 3.732212 CTTCTGGCGATGACCATTATGA 58.268 45.455 0.00 0.00 39.54 2.15
186 187 3.391506 TCTGGCGATGACCATTATGAG 57.608 47.619 0.00 0.00 39.54 2.90
187 188 2.700371 TCTGGCGATGACCATTATGAGT 59.300 45.455 0.00 0.00 39.54 3.41
188 189 3.895041 TCTGGCGATGACCATTATGAGTA 59.105 43.478 0.00 0.00 39.54 2.59
189 190 4.343814 TCTGGCGATGACCATTATGAGTAA 59.656 41.667 0.00 0.00 39.54 2.24
190 191 4.377021 TGGCGATGACCATTATGAGTAAC 58.623 43.478 0.00 0.00 33.75 2.50
191 192 3.746492 GGCGATGACCATTATGAGTAACC 59.254 47.826 0.00 0.00 0.00 2.85
192 193 3.746492 GCGATGACCATTATGAGTAACCC 59.254 47.826 0.00 0.00 0.00 4.11
193 194 3.987868 CGATGACCATTATGAGTAACCCG 59.012 47.826 0.00 0.00 0.00 5.28
194 195 3.830744 TGACCATTATGAGTAACCCGG 57.169 47.619 0.00 0.00 0.00 5.73
195 196 2.158871 TGACCATTATGAGTAACCCGGC 60.159 50.000 0.00 0.00 0.00 6.13
196 197 1.142262 ACCATTATGAGTAACCCGGCC 59.858 52.381 0.00 0.00 0.00 6.13
197 198 1.544759 CCATTATGAGTAACCCGGCCC 60.545 57.143 0.00 0.00 0.00 5.80
198 199 0.769247 ATTATGAGTAACCCGGCCCC 59.231 55.000 0.00 0.00 0.00 5.80
199 200 0.326808 TTATGAGTAACCCGGCCCCT 60.327 55.000 0.00 0.00 0.00 4.79
200 201 0.326808 TATGAGTAACCCGGCCCCTT 60.327 55.000 0.00 0.00 0.00 3.95
201 202 1.632965 ATGAGTAACCCGGCCCCTTC 61.633 60.000 0.00 0.00 0.00 3.46
202 203 1.993948 GAGTAACCCGGCCCCTTCT 60.994 63.158 0.00 0.00 0.00 2.85
203 204 2.253403 GAGTAACCCGGCCCCTTCTG 62.253 65.000 0.00 0.00 0.00 3.02
204 205 3.012722 TAACCCGGCCCCTTCTGG 61.013 66.667 0.00 0.00 0.00 3.86
212 213 4.410400 CCCCTTCTGGCGGGTGAC 62.410 72.222 0.00 0.00 40.24 3.67
213 214 3.322466 CCCTTCTGGCGGGTGACT 61.322 66.667 0.00 0.00 36.91 3.41
214 215 2.266055 CCTTCTGGCGGGTGACTC 59.734 66.667 0.00 0.00 0.00 3.36
215 216 2.286523 CCTTCTGGCGGGTGACTCT 61.287 63.158 0.00 0.00 0.00 3.24
216 217 0.970937 CCTTCTGGCGGGTGACTCTA 60.971 60.000 0.00 0.00 0.00 2.43
217 218 0.895530 CTTCTGGCGGGTGACTCTAA 59.104 55.000 0.00 0.00 0.00 2.10
218 219 0.895530 TTCTGGCGGGTGACTCTAAG 59.104 55.000 0.00 0.00 0.00 2.18
219 220 0.970937 TCTGGCGGGTGACTCTAAGG 60.971 60.000 0.00 0.00 0.00 2.69
220 221 1.229082 TGGCGGGTGACTCTAAGGT 60.229 57.895 0.00 0.00 0.00 3.50
221 222 1.255667 TGGCGGGTGACTCTAAGGTC 61.256 60.000 0.00 0.00 36.81 3.85
222 223 0.971447 GGCGGGTGACTCTAAGGTCT 60.971 60.000 0.00 0.00 37.16 3.85
223 224 1.684248 GGCGGGTGACTCTAAGGTCTA 60.684 57.143 0.00 0.00 37.16 2.59
224 225 2.308690 GCGGGTGACTCTAAGGTCTAT 58.691 52.381 0.00 0.00 37.16 1.98
225 226 2.694109 GCGGGTGACTCTAAGGTCTATT 59.306 50.000 0.00 0.00 37.16 1.73
226 227 3.132467 GCGGGTGACTCTAAGGTCTATTT 59.868 47.826 0.00 0.00 37.16 1.40
227 228 4.737055 GCGGGTGACTCTAAGGTCTATTTC 60.737 50.000 0.00 0.00 37.16 2.17
228 229 4.202131 CGGGTGACTCTAAGGTCTATTTCC 60.202 50.000 0.00 0.00 37.16 3.13
229 230 4.963628 GGGTGACTCTAAGGTCTATTTCCT 59.036 45.833 0.00 0.00 37.16 3.36
230 231 5.069383 GGGTGACTCTAAGGTCTATTTCCTC 59.931 48.000 0.00 0.00 37.16 3.71
231 232 5.657302 GGTGACTCTAAGGTCTATTTCCTCA 59.343 44.000 0.00 0.00 37.16 3.86
232 233 6.154706 GGTGACTCTAAGGTCTATTTCCTCAA 59.845 42.308 0.00 0.00 37.16 3.02
233 234 7.147637 GGTGACTCTAAGGTCTATTTCCTCAAT 60.148 40.741 0.00 0.00 37.16 2.57
234 235 8.915036 GTGACTCTAAGGTCTATTTCCTCAATA 58.085 37.037 0.00 0.00 37.16 1.90
235 236 9.137459 TGACTCTAAGGTCTATTTCCTCAATAG 57.863 37.037 0.00 0.00 44.26 1.73
236 237 8.485578 ACTCTAAGGTCTATTTCCTCAATAGG 57.514 38.462 2.52 0.00 43.41 2.57
237 238 8.068733 ACTCTAAGGTCTATTTCCTCAATAGGT 58.931 37.037 2.52 0.00 43.41 3.08
238 239 9.589461 CTCTAAGGTCTATTTCCTCAATAGGTA 57.411 37.037 2.52 0.00 43.41 3.08
239 240 9.364653 TCTAAGGTCTATTTCCTCAATAGGTAC 57.635 37.037 2.52 0.00 43.41 3.34
240 241 6.997942 AGGTCTATTTCCTCAATAGGTACC 57.002 41.667 2.73 2.73 43.41 3.34
241 242 6.449956 AGGTCTATTTCCTCAATAGGTACCA 58.550 40.000 15.94 0.00 43.41 3.25
242 243 7.082972 AGGTCTATTTCCTCAATAGGTACCAT 58.917 38.462 15.94 2.71 43.41 3.55
243 244 8.239478 AGGTCTATTTCCTCAATAGGTACCATA 58.761 37.037 15.94 4.09 43.41 2.74
244 245 8.877195 GGTCTATTTCCTCAATAGGTACCATAA 58.123 37.037 15.94 0.00 43.41 1.90
287 288 6.748333 ACTCTAACAATGACCATGAACATG 57.252 37.500 7.70 7.70 38.51 3.21
288 289 6.475504 ACTCTAACAATGACCATGAACATGA 58.524 36.000 15.21 0.00 41.20 3.07
289 290 6.942005 ACTCTAACAATGACCATGAACATGAA 59.058 34.615 15.21 2.64 41.20 2.57
290 291 7.120285 ACTCTAACAATGACCATGAACATGAAG 59.880 37.037 15.21 3.49 41.20 3.02
291 292 5.395682 AACAATGACCATGAACATGAAGG 57.604 39.130 15.21 2.77 41.20 3.46
292 293 4.410099 ACAATGACCATGAACATGAAGGT 58.590 39.130 15.21 5.80 41.20 3.50
293 294 4.460382 ACAATGACCATGAACATGAAGGTC 59.540 41.667 15.21 13.79 41.20 3.85
294 295 4.581309 ATGACCATGAACATGAAGGTCT 57.419 40.909 15.21 3.74 41.20 3.85
295 296 5.698741 ATGACCATGAACATGAAGGTCTA 57.301 39.130 15.21 6.80 41.20 2.59
296 297 5.698741 TGACCATGAACATGAAGGTCTAT 57.301 39.130 15.21 0.00 41.20 1.98
297 298 6.806668 TGACCATGAACATGAAGGTCTATA 57.193 37.500 15.21 0.00 41.20 1.31
298 299 7.379059 TGACCATGAACATGAAGGTCTATAT 57.621 36.000 15.21 0.00 41.20 0.86
299 300 7.219322 TGACCATGAACATGAAGGTCTATATG 58.781 38.462 15.21 0.00 41.20 1.78
300 301 6.537355 ACCATGAACATGAAGGTCTATATGG 58.463 40.000 15.21 0.00 41.20 2.74
301 302 6.101734 ACCATGAACATGAAGGTCTATATGGT 59.898 38.462 15.21 0.00 41.20 3.55
302 303 7.292356 ACCATGAACATGAAGGTCTATATGGTA 59.708 37.037 15.21 0.00 41.80 3.25
303 304 7.821359 CCATGAACATGAAGGTCTATATGGTAG 59.179 40.741 15.21 0.00 41.20 3.18
304 305 7.303182 TGAACATGAAGGTCTATATGGTAGG 57.697 40.000 0.00 0.00 34.06 3.18
305 306 6.844388 TGAACATGAAGGTCTATATGGTAGGT 59.156 38.462 0.00 0.00 34.06 3.08
306 307 6.919775 ACATGAAGGTCTATATGGTAGGTC 57.080 41.667 0.00 0.00 0.00 3.85
307 308 5.780793 ACATGAAGGTCTATATGGTAGGTCC 59.219 44.000 0.00 0.00 0.00 4.46
318 319 2.516887 TGGTAGGTCCACCCCTATAGA 58.483 52.381 0.00 0.00 41.93 1.98
383 384 9.635520 CTAAGAAAAAGCATCAATGAATTCAGT 57.364 29.630 14.54 8.63 0.00 3.41
388 389 5.121380 AGCATCAATGAATTCAGTACCCT 57.879 39.130 14.54 3.43 0.00 4.34
440 444 8.931775 GGAAATTTTAAAGTATTTCGCAATGGT 58.068 29.630 14.69 0.00 40.16 3.55
503 507 5.596361 CAGGAGATAAGGAAGCTTCTCAGTA 59.404 44.000 25.05 12.55 37.04 2.74
558 562 4.917474 AAAAATCGCCATGCTGCC 57.083 50.000 0.00 0.00 0.00 4.85
635 641 4.598022 TGCATCACCATCACCAATTAGAA 58.402 39.130 0.00 0.00 0.00 2.10
642 648 4.586001 ACCATCACCAATTAGAATGCATCC 59.414 41.667 0.00 0.00 0.00 3.51
651 657 4.989279 TTAGAATGCATCCTTTTGCTCC 57.011 40.909 0.00 0.00 43.18 4.70
659 665 4.343526 TGCATCCTTTTGCTCCTAAAAACA 59.656 37.500 0.00 0.00 43.18 2.83
703 710 2.787473 TCCTGCCATGTTAACCTGAG 57.213 50.000 11.95 3.16 0.00 3.35
766 773 7.823799 CCCTAAAAATTGCACATAAACCTGATT 59.176 33.333 0.00 0.00 0.00 2.57
904 911 1.518056 CGCTTTGCCATCACACCACT 61.518 55.000 0.00 0.00 0.00 4.00
913 921 2.328473 CATCACACCACTCGTACTGTG 58.672 52.381 4.70 4.70 36.20 3.66
926 937 6.485984 CACTCGTACTGTGTATATAAGGAGGT 59.514 42.308 7.45 0.00 0.00 3.85
947 958 0.823769 AGCTCGGTGACAGACAGACA 60.824 55.000 0.00 0.00 0.00 3.41
1221 1249 2.480419 GGTTTGTTCAGTCATCGTGAGG 59.520 50.000 0.00 0.00 0.00 3.86
1222 1250 3.131396 GTTTGTTCAGTCATCGTGAGGT 58.869 45.455 0.00 0.00 0.00 3.85
1223 1251 2.724977 TGTTCAGTCATCGTGAGGTC 57.275 50.000 0.00 0.00 0.00 3.85
1224 1252 1.068541 TGTTCAGTCATCGTGAGGTCG 60.069 52.381 0.00 0.00 0.00 4.79
1247 1275 2.289382 TGAGGTCAACTGCATCGCTTAA 60.289 45.455 0.00 0.00 0.00 1.85
1253 1281 0.107654 ACTGCATCGCTTAACCCTCC 60.108 55.000 0.00 0.00 0.00 4.30
1257 1285 0.810031 CATCGCTTAACCCTCCCGTG 60.810 60.000 0.00 0.00 0.00 4.94
1345 1373 1.291877 CGCCTTCTATGGGTATGCGC 61.292 60.000 0.00 0.00 33.82 6.09
1396 1424 1.767759 ACTCCACTTTGTTGCTTGCT 58.232 45.000 0.00 0.00 0.00 3.91
1397 1425 2.102578 ACTCCACTTTGTTGCTTGCTT 58.897 42.857 0.00 0.00 0.00 3.91
1398 1426 2.159198 ACTCCACTTTGTTGCTTGCTTG 60.159 45.455 0.00 0.00 0.00 4.01
1399 1427 0.932399 CCACTTTGTTGCTTGCTTGC 59.068 50.000 0.00 0.00 0.00 4.01
1708 1749 0.175760 TACTTCTGTGCATCGGAGGC 59.824 55.000 7.84 7.84 32.62 4.70
1884 1925 2.903784 TGTGGACAGTACAGCAGGTAAT 59.096 45.455 0.00 0.00 32.72 1.89
1885 1926 4.090819 TGTGGACAGTACAGCAGGTAATA 58.909 43.478 0.00 0.00 32.72 0.98
1886 1927 4.081862 TGTGGACAGTACAGCAGGTAATAC 60.082 45.833 0.00 0.00 32.72 1.89
1887 1928 4.081862 GTGGACAGTACAGCAGGTAATACA 60.082 45.833 0.00 0.00 32.72 2.29
1888 1929 4.528987 TGGACAGTACAGCAGGTAATACAA 59.471 41.667 0.00 0.00 32.72 2.41
1930 1971 1.135746 CCTCGTGGAAGTGTACTCGTC 60.136 57.143 0.00 2.71 34.57 4.20
2047 2088 1.872679 GTCGTTCGTCATCGCCCTC 60.873 63.158 0.00 0.00 36.96 4.30
2121 2162 1.623973 GCGGTGCTCTTCACGGTAAC 61.624 60.000 4.90 0.00 46.56 2.50
2130 2171 1.464608 CTTCACGGTAACCATGCACAG 59.535 52.381 0.00 0.00 0.00 3.66
2139 2180 2.057137 ACCATGCACAGTGTTCAACT 57.943 45.000 0.00 0.00 40.93 3.16
2144 2185 2.917933 TGCACAGTGTTCAACTAGCTT 58.082 42.857 1.61 0.00 38.97 3.74
2145 2186 3.278574 TGCACAGTGTTCAACTAGCTTT 58.721 40.909 1.61 0.00 38.97 3.51
2146 2187 3.065233 TGCACAGTGTTCAACTAGCTTTG 59.935 43.478 1.61 0.00 38.97 2.77
2147 2188 3.065371 GCACAGTGTTCAACTAGCTTTGT 59.935 43.478 1.61 0.00 36.83 2.83
2148 2189 4.272504 GCACAGTGTTCAACTAGCTTTGTA 59.727 41.667 1.61 0.00 36.83 2.41
2149 2190 5.220777 GCACAGTGTTCAACTAGCTTTGTAA 60.221 40.000 1.61 0.00 36.83 2.41
2150 2191 6.513393 GCACAGTGTTCAACTAGCTTTGTAAT 60.513 38.462 1.61 0.00 36.83 1.89
2151 2192 6.852853 CACAGTGTTCAACTAGCTTTGTAATG 59.147 38.462 0.00 0.00 36.83 1.90
2152 2193 6.542370 ACAGTGTTCAACTAGCTTTGTAATGT 59.458 34.615 0.00 0.00 36.83 2.71
2153 2194 7.713507 ACAGTGTTCAACTAGCTTTGTAATGTA 59.286 33.333 0.00 0.00 36.83 2.29
2154 2195 8.223769 CAGTGTTCAACTAGCTTTGTAATGTAG 58.776 37.037 0.00 0.00 36.83 2.74
2155 2196 7.387948 AGTGTTCAACTAGCTTTGTAATGTAGG 59.612 37.037 0.00 0.00 37.36 3.18
2163 2204 9.122779 ACTAGCTTTGTAATGTAGGAGTAGTAG 57.877 37.037 0.00 0.00 0.00 2.57
2167 2208 7.701501 GCTTTGTAATGTAGGAGTAGTAGTGTC 59.298 40.741 0.00 0.00 0.00 3.67
2169 2210 6.966751 TGTAATGTAGGAGTAGTAGTGTCCT 58.033 40.000 8.08 8.08 43.43 3.85
2171 2212 3.618351 TGTAGGAGTAGTAGTGTCCTGC 58.382 50.000 11.81 11.03 41.05 4.85
2173 2214 5.106617 TGTAGGAGTAGTAGTGTCCTGCAC 61.107 50.000 14.05 6.96 45.03 4.57
2185 2226 4.137879 CTGCACCTGCTGGCTATC 57.862 61.111 9.95 0.00 42.66 2.08
2186 2227 1.525923 CTGCACCTGCTGGCTATCT 59.474 57.895 9.95 0.00 42.66 1.98
2187 2228 0.755079 CTGCACCTGCTGGCTATCTA 59.245 55.000 9.95 0.00 42.66 1.98
2188 2229 1.347050 CTGCACCTGCTGGCTATCTAT 59.653 52.381 9.95 0.00 42.66 1.98
2189 2230 1.770658 TGCACCTGCTGGCTATCTATT 59.229 47.619 9.95 0.00 42.66 1.73
2190 2231 2.173356 TGCACCTGCTGGCTATCTATTT 59.827 45.455 9.95 0.00 42.66 1.40
2191 2232 2.810852 GCACCTGCTGGCTATCTATTTC 59.189 50.000 9.95 0.00 38.21 2.17
2192 2233 3.495806 GCACCTGCTGGCTATCTATTTCT 60.496 47.826 9.95 0.00 38.21 2.52
2193 2234 4.712476 CACCTGCTGGCTATCTATTTCTT 58.288 43.478 9.95 0.00 36.63 2.52
2204 2245 6.936900 GGCTATCTATTTCTTGCCATGACTAA 59.063 38.462 0.00 0.00 40.04 2.24
2205 2246 7.445402 GGCTATCTATTTCTTGCCATGACTAAA 59.555 37.037 0.00 0.00 40.04 1.85
2206 2247 8.840321 GCTATCTATTTCTTGCCATGACTAAAA 58.160 33.333 0.00 0.00 0.00 1.52
2470 2534 1.669437 TGCACCGCATCGCAAAGTA 60.669 52.632 0.00 0.00 34.59 2.24
2471 2535 1.060937 GCACCGCATCGCAAAGTAG 59.939 57.895 0.00 0.00 0.00 2.57
2472 2536 1.635663 GCACCGCATCGCAAAGTAGT 61.636 55.000 0.00 0.00 0.00 2.73
2530 2594 1.301401 CCGGACACCTTCGCTTTCA 60.301 57.895 0.00 0.00 0.00 2.69
2549 2613 2.097954 TCACAGATGCGAATCCAAATGC 59.902 45.455 0.00 0.00 0.00 3.56
2637 2709 2.661866 ATTATCGGTGGCGCGCTC 60.662 61.111 32.29 22.91 0.00 5.03
2927 3002 5.118050 ACGTCAGTAATTTGTCATGTGTACG 59.882 40.000 0.00 0.00 0.00 3.67
3074 3152 6.319658 CCAGTATGAGTTTACCATGCAGAATT 59.680 38.462 0.00 0.00 39.69 2.17
3203 3455 6.686630 AGAAGCAGACTCCATCTAATATTCG 58.313 40.000 0.00 0.00 35.15 3.34
3261 3514 1.283029 TCTGCCTCCTCAATCTTTGGG 59.717 52.381 0.00 0.00 0.00 4.12
3289 3542 3.273434 TCATCATGCTTTGTACCTGCTC 58.727 45.455 0.00 0.00 0.00 4.26
3300 3553 2.223805 TGTACCTGCTCGATGCTACATG 60.224 50.000 8.07 0.00 43.37 3.21
3303 3556 2.430694 ACCTGCTCGATGCTACATGTTA 59.569 45.455 2.30 0.00 43.37 2.41
3308 3561 4.935205 TGCTCGATGCTACATGTTAAGTTT 59.065 37.500 2.30 0.00 43.37 2.66
3383 3638 2.638556 TTTTGTGGTGTCGGTTTGTG 57.361 45.000 0.00 0.00 0.00 3.33
3390 3645 2.678836 TGGTGTCGGTTTGTGTTAACAG 59.321 45.455 8.98 0.00 37.67 3.16
3451 3706 0.916845 GAGGAAAGAAGGGGGAGGCT 60.917 60.000 0.00 0.00 0.00 4.58
3452 3707 0.421904 AGGAAAGAAGGGGGAGGCTA 59.578 55.000 0.00 0.00 0.00 3.93
3468 3723 4.068599 GAGGCTATAAGGGCATCTTCAAC 58.931 47.826 0.00 0.00 37.49 3.18
3497 3752 1.268234 GCAAATTTCCTCTCGCATCCG 60.268 52.381 0.00 0.00 0.00 4.18
3504 3759 1.300465 CTCTCGCATCCGTCCATGG 60.300 63.158 4.97 4.97 35.54 3.66
3508 3763 1.884464 CGCATCCGTCCATGGACAG 60.884 63.158 37.42 29.51 44.77 3.51
3530 3785 0.179124 GAGGATCAGTCTGCGGACAC 60.179 60.000 27.02 14.38 44.36 3.67
3555 3810 2.046285 GGGAGGCAACCATCCAACG 61.046 63.158 3.41 0.00 37.33 4.10
3556 3811 2.700773 GGAGGCAACCATCCAACGC 61.701 63.158 0.00 0.00 35.54 4.84
3607 3862 0.872388 AAACCGGACGAAACTCATGC 59.128 50.000 9.46 0.00 0.00 4.06
3632 3887 7.201401 GCAAACACAACGGATTTCATATAAACC 60.201 37.037 0.00 0.00 0.00 3.27
3636 3891 6.905076 CACAACGGATTTCATATAAACCGAAG 59.095 38.462 12.36 7.48 42.40 3.79
3724 3980 1.002430 GAGCTTCACTCCCATGACACA 59.998 52.381 0.00 0.00 39.75 3.72
3745 4001 6.534436 ACACAGATACACTACACTAGTCTACG 59.466 42.308 0.00 0.00 36.76 3.51
3746 4002 6.018913 CACAGATACACTACACTAGTCTACGG 60.019 46.154 0.00 0.00 36.76 4.02
3747 4003 5.050227 CAGATACACTACACTAGTCTACGGC 60.050 48.000 0.00 0.00 36.76 5.68
3748 4004 2.363683 ACACTACACTAGTCTACGGCC 58.636 52.381 0.00 0.00 36.76 6.13
3749 4005 1.329906 CACTACACTAGTCTACGGCCG 59.670 57.143 26.86 26.86 36.76 6.13
3750 4006 0.942962 CTACACTAGTCTACGGCCGG 59.057 60.000 31.76 13.23 0.00 6.13
3751 4007 1.097547 TACACTAGTCTACGGCCGGC 61.098 60.000 31.76 21.18 0.00 6.13
3752 4008 2.832201 ACTAGTCTACGGCCGGCC 60.832 66.667 36.69 36.69 0.00 6.13
3770 4026 4.241555 GCGGCGGATCCCATGTCT 62.242 66.667 9.78 0.00 0.00 3.41
3771 4027 2.505982 CGGCGGATCCCATGTCTT 59.494 61.111 6.06 0.00 0.00 3.01
3772 4028 1.595382 CGGCGGATCCCATGTCTTC 60.595 63.158 6.06 0.00 0.00 2.87
3773 4029 1.227973 GGCGGATCCCATGTCTTCC 60.228 63.158 6.06 0.00 0.00 3.46
3774 4030 1.227973 GCGGATCCCATGTCTTCCC 60.228 63.158 6.06 0.00 0.00 3.97
3775 4031 1.451936 CGGATCCCATGTCTTCCCC 59.548 63.158 6.06 0.00 0.00 4.81
3776 4032 1.344953 CGGATCCCATGTCTTCCCCA 61.345 60.000 6.06 0.00 0.00 4.96
3777 4033 1.152649 GGATCCCATGTCTTCCCCAT 58.847 55.000 0.00 0.00 0.00 4.00
3778 4034 1.202976 GGATCCCATGTCTTCCCCATG 60.203 57.143 0.00 0.00 39.50 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.045242 CCGGTCGGGACTCTGAGA 60.045 66.667 12.44 0.00 38.47 3.27
1 2 3.827898 GCCGGTCGGGACTCTGAG 61.828 72.222 11.60 2.45 38.47 3.35
2 3 4.361971 AGCCGGTCGGGACTCTGA 62.362 66.667 11.60 0.00 38.47 3.27
3 4 3.827898 GAGCCGGTCGGGACTCTG 61.828 72.222 11.60 0.00 38.47 3.35
4 5 2.280404 TATGAGCCGGTCGGGACTCT 62.280 60.000 11.60 0.00 38.79 3.24
5 6 1.389609 TTATGAGCCGGTCGGGACTC 61.390 60.000 11.60 10.20 38.60 3.36
6 7 0.974010 TTTATGAGCCGGTCGGGACT 60.974 55.000 11.60 0.35 38.47 3.85
7 8 0.108041 TTTTATGAGCCGGTCGGGAC 60.108 55.000 11.60 0.00 38.47 4.46
8 9 0.177141 CTTTTATGAGCCGGTCGGGA 59.823 55.000 11.60 0.00 38.47 5.14
9 10 0.107848 ACTTTTATGAGCCGGTCGGG 60.108 55.000 11.60 2.06 39.58 5.14
10 11 1.006832 CACTTTTATGAGCCGGTCGG 58.993 55.000 1.90 4.85 38.57 4.79
11 12 1.659098 GACACTTTTATGAGCCGGTCG 59.341 52.381 1.90 0.00 0.00 4.79
12 13 2.007608 GGACACTTTTATGAGCCGGTC 58.992 52.381 1.90 0.00 0.00 4.79
13 14 1.674817 CGGACACTTTTATGAGCCGGT 60.675 52.381 1.90 0.00 37.39 5.28
14 15 1.006832 CGGACACTTTTATGAGCCGG 58.993 55.000 0.00 0.00 37.39 6.13
15 16 1.006832 CCGGACACTTTTATGAGCCG 58.993 55.000 0.00 0.00 39.26 5.52
16 17 0.733150 GCCGGACACTTTTATGAGCC 59.267 55.000 5.05 0.00 0.00 4.70
17 18 1.666189 GAGCCGGACACTTTTATGAGC 59.334 52.381 5.05 0.00 0.00 4.26
18 19 1.927174 CGAGCCGGACACTTTTATGAG 59.073 52.381 5.05 0.00 0.00 2.90
19 20 2.004583 CGAGCCGGACACTTTTATGA 57.995 50.000 5.05 0.00 0.00 2.15
32 33 1.002251 GATAGTTGAGAGTCCGAGCCG 60.002 57.143 0.00 0.00 0.00 5.52
33 34 1.338655 GGATAGTTGAGAGTCCGAGCC 59.661 57.143 0.00 0.00 0.00 4.70
34 35 2.303175 AGGATAGTTGAGAGTCCGAGC 58.697 52.381 0.00 0.00 35.89 5.03
35 36 3.490078 GCAAGGATAGTTGAGAGTCCGAG 60.490 52.174 0.00 0.00 35.89 4.63
36 37 2.427453 GCAAGGATAGTTGAGAGTCCGA 59.573 50.000 0.00 0.00 35.89 4.55
37 38 2.482142 GGCAAGGATAGTTGAGAGTCCG 60.482 54.545 0.00 0.00 35.89 4.79
38 39 2.769095 AGGCAAGGATAGTTGAGAGTCC 59.231 50.000 0.00 0.00 0.00 3.85
39 40 4.479786 AAGGCAAGGATAGTTGAGAGTC 57.520 45.455 0.00 0.00 0.00 3.36
40 41 4.777896 TGTAAGGCAAGGATAGTTGAGAGT 59.222 41.667 0.00 0.00 0.00 3.24
41 42 5.105146 AGTGTAAGGCAAGGATAGTTGAGAG 60.105 44.000 0.00 0.00 0.00 3.20
42 43 4.777896 AGTGTAAGGCAAGGATAGTTGAGA 59.222 41.667 0.00 0.00 0.00 3.27
43 44 5.091261 AGTGTAAGGCAAGGATAGTTGAG 57.909 43.478 0.00 0.00 0.00 3.02
44 45 5.482526 TGTAGTGTAAGGCAAGGATAGTTGA 59.517 40.000 0.00 0.00 0.00 3.18
45 46 5.730550 TGTAGTGTAAGGCAAGGATAGTTG 58.269 41.667 0.00 0.00 0.00 3.16
46 47 6.013639 ACTTGTAGTGTAAGGCAAGGATAGTT 60.014 38.462 7.83 0.00 41.65 2.24
47 48 5.484290 ACTTGTAGTGTAAGGCAAGGATAGT 59.516 40.000 7.83 0.00 41.65 2.12
48 49 5.978814 ACTTGTAGTGTAAGGCAAGGATAG 58.021 41.667 7.83 0.00 41.65 2.08
49 50 6.212791 AGAACTTGTAGTGTAAGGCAAGGATA 59.787 38.462 7.83 0.00 41.65 2.59
50 51 4.910458 ACTTGTAGTGTAAGGCAAGGAT 57.090 40.909 7.83 0.00 41.65 3.24
51 52 4.347000 AGAACTTGTAGTGTAAGGCAAGGA 59.653 41.667 7.83 0.00 41.65 3.36
52 53 4.642429 AGAACTTGTAGTGTAAGGCAAGG 58.358 43.478 7.83 0.00 41.65 3.61
53 54 5.638234 GGTAGAACTTGTAGTGTAAGGCAAG 59.362 44.000 0.00 0.00 42.65 4.01
54 55 5.070714 TGGTAGAACTTGTAGTGTAAGGCAA 59.929 40.000 0.00 0.00 0.00 4.52
55 56 4.589798 TGGTAGAACTTGTAGTGTAAGGCA 59.410 41.667 0.00 0.00 0.00 4.75
56 57 5.143376 TGGTAGAACTTGTAGTGTAAGGC 57.857 43.478 0.00 0.00 0.00 4.35
57 58 8.308931 TGTTATGGTAGAACTTGTAGTGTAAGG 58.691 37.037 0.00 0.00 0.00 2.69
58 59 9.701098 TTGTTATGGTAGAACTTGTAGTGTAAG 57.299 33.333 0.00 0.00 0.00 2.34
60 61 9.647797 CATTGTTATGGTAGAACTTGTAGTGTA 57.352 33.333 0.00 0.00 0.00 2.90
61 62 8.372459 TCATTGTTATGGTAGAACTTGTAGTGT 58.628 33.333 0.00 0.00 32.40 3.55
62 63 8.771920 TCATTGTTATGGTAGAACTTGTAGTG 57.228 34.615 0.00 0.00 32.40 2.74
63 64 9.959721 AATCATTGTTATGGTAGAACTTGTAGT 57.040 29.630 0.00 0.00 32.40 2.73
65 66 9.733556 ACAATCATTGTTATGGTAGAACTTGTA 57.266 29.630 0.00 0.00 42.22 2.41
66 67 8.635765 ACAATCATTGTTATGGTAGAACTTGT 57.364 30.769 0.00 0.00 42.22 3.16
69 70 9.959721 AGTTACAATCATTGTTATGGTAGAACT 57.040 29.630 8.69 6.77 42.22 3.01
72 73 9.524106 CGTAGTTACAATCATTGTTATGGTAGA 57.476 33.333 8.69 0.00 42.22 2.59
73 74 8.761497 CCGTAGTTACAATCATTGTTATGGTAG 58.239 37.037 8.69 0.00 42.22 3.18
74 75 7.711772 CCCGTAGTTACAATCATTGTTATGGTA 59.288 37.037 8.69 0.00 42.22 3.25
75 76 6.540914 CCCGTAGTTACAATCATTGTTATGGT 59.459 38.462 8.69 0.00 42.22 3.55
76 77 6.512741 GCCCGTAGTTACAATCATTGTTATGG 60.513 42.308 8.69 9.76 42.22 2.74
77 78 6.427150 GCCCGTAGTTACAATCATTGTTATG 58.573 40.000 8.69 0.87 42.22 1.90
78 79 5.529800 GGCCCGTAGTTACAATCATTGTTAT 59.470 40.000 8.69 0.00 42.22 1.89
79 80 4.877251 GGCCCGTAGTTACAATCATTGTTA 59.123 41.667 8.69 0.00 42.22 2.41
80 81 3.692593 GGCCCGTAGTTACAATCATTGTT 59.307 43.478 8.69 0.00 42.22 2.83
82 83 3.541632 AGGCCCGTAGTTACAATCATTG 58.458 45.455 0.00 0.00 0.00 2.82
83 84 3.926058 AGGCCCGTAGTTACAATCATT 57.074 42.857 0.00 0.00 0.00 2.57
84 85 3.926058 AAGGCCCGTAGTTACAATCAT 57.074 42.857 0.00 0.00 0.00 2.45
85 86 4.761975 CTTAAGGCCCGTAGTTACAATCA 58.238 43.478 0.00 0.00 0.00 2.57
86 87 3.558829 GCTTAAGGCCCGTAGTTACAATC 59.441 47.826 0.00 0.00 34.27 2.67
87 88 3.538591 GCTTAAGGCCCGTAGTTACAAT 58.461 45.455 0.00 0.00 34.27 2.71
88 89 2.976589 GCTTAAGGCCCGTAGTTACAA 58.023 47.619 0.00 0.00 34.27 2.41
89 90 2.678471 GCTTAAGGCCCGTAGTTACA 57.322 50.000 0.00 0.00 34.27 2.41
100 101 0.400594 ACCCGGATATGGCTTAAGGC 59.599 55.000 21.52 21.52 41.50 4.35
101 102 1.978580 AGACCCGGATATGGCTTAAGG 59.021 52.381 0.73 0.00 0.00 2.69
102 103 3.771577 AAGACCCGGATATGGCTTAAG 57.228 47.619 0.73 0.00 0.00 1.85
103 104 5.370679 GTTTAAGACCCGGATATGGCTTAA 58.629 41.667 11.24 11.24 33.58 1.85
104 105 4.202388 GGTTTAAGACCCGGATATGGCTTA 60.202 45.833 0.73 0.28 43.06 3.09
105 106 3.434596 GGTTTAAGACCCGGATATGGCTT 60.435 47.826 0.73 1.50 43.06 4.35
106 107 2.105993 GGTTTAAGACCCGGATATGGCT 59.894 50.000 0.73 0.00 43.06 4.75
107 108 2.501261 GGTTTAAGACCCGGATATGGC 58.499 52.381 0.73 0.00 43.06 4.40
128 129 0.609131 AAGACGGTGGGCCAAAGATG 60.609 55.000 8.40 0.00 34.09 2.90
129 130 0.322546 GAAGACGGTGGGCCAAAGAT 60.323 55.000 8.40 0.00 34.09 2.40
130 131 1.072505 GAAGACGGTGGGCCAAAGA 59.927 57.895 8.40 0.00 34.09 2.52
131 132 0.821711 TTGAAGACGGTGGGCCAAAG 60.822 55.000 8.40 8.04 34.09 2.77
132 133 0.821711 CTTGAAGACGGTGGGCCAAA 60.822 55.000 8.40 0.00 34.09 3.28
133 134 1.228124 CTTGAAGACGGTGGGCCAA 60.228 57.895 8.40 0.00 34.09 4.52
134 135 2.429930 CTTGAAGACGGTGGGCCA 59.570 61.111 0.00 0.00 34.09 5.36
135 136 3.056328 GCTTGAAGACGGTGGGCC 61.056 66.667 0.00 0.00 0.00 5.80
136 137 1.600916 AAGCTTGAAGACGGTGGGC 60.601 57.895 0.00 0.00 0.00 5.36
137 138 1.237285 CCAAGCTTGAAGACGGTGGG 61.237 60.000 28.05 2.68 0.00 4.61
138 139 1.856265 GCCAAGCTTGAAGACGGTGG 61.856 60.000 28.05 9.54 0.00 4.61
139 140 1.576421 GCCAAGCTTGAAGACGGTG 59.424 57.895 28.05 9.25 0.00 4.94
140 141 1.961277 CGCCAAGCTTGAAGACGGT 60.961 57.895 28.05 0.00 0.00 4.83
141 142 2.863153 CGCCAAGCTTGAAGACGG 59.137 61.111 28.05 10.97 0.00 4.79
142 143 2.174349 GCGCCAAGCTTGAAGACG 59.826 61.111 28.05 23.05 44.04 4.18
149 150 4.982701 AAGCCTGGCGCCAAGCTT 62.983 61.111 44.82 44.82 45.56 3.74
152 153 3.437795 CAGAAGCCTGGCGCCAAG 61.438 66.667 32.09 26.51 38.78 3.61
160 161 1.817099 GGTCATCGCCAGAAGCCTG 60.817 63.158 0.00 0.00 38.78 4.85
161 162 1.630126 ATGGTCATCGCCAGAAGCCT 61.630 55.000 0.00 0.00 42.47 4.58
162 163 0.749454 AATGGTCATCGCCAGAAGCC 60.749 55.000 0.00 0.00 42.47 4.35
163 164 1.953559 TAATGGTCATCGCCAGAAGC 58.046 50.000 0.00 0.00 42.47 3.86
164 165 3.732212 TCATAATGGTCATCGCCAGAAG 58.268 45.455 0.00 0.00 42.47 2.85
165 166 3.134623 ACTCATAATGGTCATCGCCAGAA 59.865 43.478 0.00 0.00 42.47 3.02
166 167 2.700371 ACTCATAATGGTCATCGCCAGA 59.300 45.455 0.00 0.00 42.47 3.86
167 168 3.117491 ACTCATAATGGTCATCGCCAG 57.883 47.619 0.00 0.00 42.47 4.85
168 169 4.377021 GTTACTCATAATGGTCATCGCCA 58.623 43.478 0.00 0.00 43.48 5.69
169 170 3.746492 GGTTACTCATAATGGTCATCGCC 59.254 47.826 0.00 0.00 0.00 5.54
170 171 3.746492 GGGTTACTCATAATGGTCATCGC 59.254 47.826 0.00 0.00 0.00 4.58
171 172 3.987868 CGGGTTACTCATAATGGTCATCG 59.012 47.826 0.00 0.00 0.00 3.84
172 173 4.315803 CCGGGTTACTCATAATGGTCATC 58.684 47.826 0.00 0.00 0.00 2.92
173 174 3.496160 GCCGGGTTACTCATAATGGTCAT 60.496 47.826 2.18 0.00 0.00 3.06
174 175 2.158871 GCCGGGTTACTCATAATGGTCA 60.159 50.000 2.18 0.00 0.00 4.02
175 176 2.490991 GCCGGGTTACTCATAATGGTC 58.509 52.381 2.18 0.00 0.00 4.02
176 177 1.142262 GGCCGGGTTACTCATAATGGT 59.858 52.381 2.18 0.00 0.00 3.55
177 178 1.544759 GGGCCGGGTTACTCATAATGG 60.545 57.143 2.18 0.00 0.00 3.16
178 179 1.544759 GGGGCCGGGTTACTCATAATG 60.545 57.143 2.18 0.00 0.00 1.90
179 180 0.769247 GGGGCCGGGTTACTCATAAT 59.231 55.000 2.18 0.00 0.00 1.28
180 181 0.326808 AGGGGCCGGGTTACTCATAA 60.327 55.000 2.18 0.00 0.00 1.90
181 182 0.326808 AAGGGGCCGGGTTACTCATA 60.327 55.000 2.18 0.00 0.00 2.15
182 183 1.618447 AAGGGGCCGGGTTACTCAT 60.618 57.895 2.18 0.00 0.00 2.90
183 184 2.204029 AAGGGGCCGGGTTACTCA 60.204 61.111 2.18 0.00 0.00 3.41
184 185 1.993948 AGAAGGGGCCGGGTTACTC 60.994 63.158 2.18 0.00 0.00 2.59
185 186 2.124312 AGAAGGGGCCGGGTTACT 59.876 61.111 2.18 0.00 0.00 2.24
186 187 2.271173 CAGAAGGGGCCGGGTTAC 59.729 66.667 2.18 0.00 0.00 2.50
187 188 3.012722 CCAGAAGGGGCCGGGTTA 61.013 66.667 2.18 0.00 0.00 2.85
197 198 0.970937 TAGAGTCACCCGCCAGAAGG 60.971 60.000 0.00 0.00 38.23 3.46
198 199 0.895530 TTAGAGTCACCCGCCAGAAG 59.104 55.000 0.00 0.00 0.00 2.85
199 200 0.895530 CTTAGAGTCACCCGCCAGAA 59.104 55.000 0.00 0.00 0.00 3.02
200 201 0.970937 CCTTAGAGTCACCCGCCAGA 60.971 60.000 0.00 0.00 0.00 3.86
201 202 1.258445 ACCTTAGAGTCACCCGCCAG 61.258 60.000 0.00 0.00 0.00 4.85
202 203 1.229082 ACCTTAGAGTCACCCGCCA 60.229 57.895 0.00 0.00 0.00 5.69
203 204 0.971447 AGACCTTAGAGTCACCCGCC 60.971 60.000 0.00 0.00 39.34 6.13
204 205 1.760192 TAGACCTTAGAGTCACCCGC 58.240 55.000 0.00 0.00 39.34 6.13
205 206 4.202131 GGAAATAGACCTTAGAGTCACCCG 60.202 50.000 0.00 0.00 39.34 5.28
206 207 4.963628 AGGAAATAGACCTTAGAGTCACCC 59.036 45.833 0.00 0.00 39.34 4.61
207 208 5.657302 TGAGGAAATAGACCTTAGAGTCACC 59.343 44.000 0.00 0.00 39.34 4.02
208 209 6.777213 TGAGGAAATAGACCTTAGAGTCAC 57.223 41.667 0.00 0.00 39.34 3.67
209 210 7.979786 ATTGAGGAAATAGACCTTAGAGTCA 57.020 36.000 0.00 0.00 39.34 3.41
261 262 8.896744 CATGTTCATGGTCATTGTTAGAGTAAT 58.103 33.333 5.02 0.00 0.00 1.89
262 263 8.100164 TCATGTTCATGGTCATTGTTAGAGTAA 58.900 33.333 12.02 0.00 0.00 2.24
263 264 7.619965 TCATGTTCATGGTCATTGTTAGAGTA 58.380 34.615 12.02 0.00 0.00 2.59
264 265 6.475504 TCATGTTCATGGTCATTGTTAGAGT 58.524 36.000 12.02 0.00 0.00 3.24
265 266 6.990341 TCATGTTCATGGTCATTGTTAGAG 57.010 37.500 12.02 0.00 0.00 2.43
266 267 6.375174 CCTTCATGTTCATGGTCATTGTTAGA 59.625 38.462 12.02 0.00 0.00 2.10
267 268 6.151648 ACCTTCATGTTCATGGTCATTGTTAG 59.848 38.462 12.02 0.00 0.00 2.34
268 269 6.009589 ACCTTCATGTTCATGGTCATTGTTA 58.990 36.000 12.02 0.00 0.00 2.41
269 270 4.834496 ACCTTCATGTTCATGGTCATTGTT 59.166 37.500 12.02 0.00 0.00 2.83
270 271 4.410099 ACCTTCATGTTCATGGTCATTGT 58.590 39.130 12.02 1.05 0.00 2.71
271 272 4.703575 AGACCTTCATGTTCATGGTCATTG 59.296 41.667 17.17 4.82 46.81 2.82
272 273 4.927049 AGACCTTCATGTTCATGGTCATT 58.073 39.130 17.17 2.23 46.81 2.57
273 274 4.581309 AGACCTTCATGTTCATGGTCAT 57.419 40.909 17.17 0.00 46.81 3.06
274 275 5.698741 ATAGACCTTCATGTTCATGGTCA 57.301 39.130 17.17 8.34 46.81 4.02
275 276 6.652481 CCATATAGACCTTCATGTTCATGGTC 59.348 42.308 12.02 11.32 45.31 4.02
276 277 6.101734 ACCATATAGACCTTCATGTTCATGGT 59.898 38.462 12.02 0.00 38.03 3.55
277 278 6.537355 ACCATATAGACCTTCATGTTCATGG 58.463 40.000 12.02 0.00 36.20 3.66
278 279 7.821359 CCTACCATATAGACCTTCATGTTCATG 59.179 40.741 6.46 6.46 0.00 3.07
279 280 7.514127 ACCTACCATATAGACCTTCATGTTCAT 59.486 37.037 0.00 0.00 0.00 2.57
280 281 6.844388 ACCTACCATATAGACCTTCATGTTCA 59.156 38.462 0.00 0.00 0.00 3.18
281 282 7.304497 ACCTACCATATAGACCTTCATGTTC 57.696 40.000 0.00 0.00 0.00 3.18
282 283 6.270231 GGACCTACCATATAGACCTTCATGTT 59.730 42.308 0.00 0.00 38.79 2.71
283 284 5.780793 GGACCTACCATATAGACCTTCATGT 59.219 44.000 0.00 0.00 38.79 3.21
284 285 5.780282 TGGACCTACCATATAGACCTTCATG 59.220 44.000 0.00 0.00 44.64 3.07
285 286 5.977533 TGGACCTACCATATAGACCTTCAT 58.022 41.667 0.00 0.00 44.64 2.57
286 287 5.412617 TGGACCTACCATATAGACCTTCA 57.587 43.478 0.00 0.00 44.64 3.02
298 299 2.178544 GTCTATAGGGGTGGACCTACCA 59.821 54.545 13.16 0.00 45.40 3.25
299 300 2.492381 GGTCTATAGGGGTGGACCTACC 60.492 59.091 0.00 4.91 45.40 3.18
300 301 2.178544 TGGTCTATAGGGGTGGACCTAC 59.821 54.545 10.18 0.00 46.53 3.18
301 302 2.449730 CTGGTCTATAGGGGTGGACCTA 59.550 54.545 10.18 0.00 46.53 3.08
302 303 1.220750 CTGGTCTATAGGGGTGGACCT 59.779 57.143 10.18 0.00 46.53 3.85
303 304 1.062352 ACTGGTCTATAGGGGTGGACC 60.062 57.143 0.00 0.00 46.57 4.46
304 305 2.473576 ACTGGTCTATAGGGGTGGAC 57.526 55.000 0.00 0.00 0.00 4.02
305 306 3.398292 CTCTACTGGTCTATAGGGGTGGA 59.602 52.174 0.00 1.61 0.00 4.02
306 307 3.398292 TCTCTACTGGTCTATAGGGGTGG 59.602 52.174 0.00 0.00 0.00 4.61
307 308 4.726035 TCTCTACTGGTCTATAGGGGTG 57.274 50.000 0.00 0.00 0.00 4.61
308 309 4.448054 GCTTCTCTACTGGTCTATAGGGGT 60.448 50.000 0.00 0.00 0.00 4.95
309 310 4.083565 GCTTCTCTACTGGTCTATAGGGG 58.916 52.174 0.00 0.00 0.00 4.79
310 311 4.764823 CAGCTTCTCTACTGGTCTATAGGG 59.235 50.000 0.00 0.00 0.00 3.53
311 312 4.764823 CCAGCTTCTCTACTGGTCTATAGG 59.235 50.000 0.00 0.00 46.95 2.57
312 313 5.957842 CCAGCTTCTCTACTGGTCTATAG 57.042 47.826 0.79 0.00 46.95 1.31
371 372 7.693969 AGAGAAAAGGGTACTGAATTCATTG 57.306 36.000 8.96 0.48 0.00 2.82
383 384 9.862149 AAACTGATTTAAGAAGAGAAAAGGGTA 57.138 29.630 0.00 0.00 0.00 3.69
440 444 1.937899 CAGATGAATGATCAGCGTGCA 59.062 47.619 0.09 0.00 46.51 4.57
503 507 5.889289 TGTAAGTTGAGCTTTGTTTAGGGTT 59.111 36.000 0.00 0.00 38.57 4.11
558 562 5.155509 TGAATAAATTGCGACTTGGATCG 57.844 39.130 0.00 0.00 45.09 3.69
642 648 6.865205 CAGGAAGATGTTTTTAGGAGCAAAAG 59.135 38.462 0.00 0.00 0.00 2.27
651 657 4.392138 GGGACGACAGGAAGATGTTTTTAG 59.608 45.833 0.00 0.00 32.25 1.85
659 665 2.876079 GCTTTTGGGACGACAGGAAGAT 60.876 50.000 0.00 0.00 0.00 2.40
703 710 3.450578 CCAGTTCATTTATGTGCATGGC 58.549 45.455 0.00 0.00 0.00 4.40
766 773 4.188462 CAACGATTTCAGGTATGGTAGCA 58.812 43.478 0.00 0.00 0.00 3.49
904 911 6.594744 TCACCTCCTTATATACACAGTACGA 58.405 40.000 0.00 0.00 0.00 3.43
913 921 4.080687 ACCGAGCTCACCTCCTTATATAC 58.919 47.826 15.40 0.00 37.27 1.47
926 937 0.537371 TCTGTCTGTCACCGAGCTCA 60.537 55.000 15.40 0.00 0.00 4.26
947 958 1.134521 TGCTTCACTTCCGTTGTGTCT 60.135 47.619 0.00 0.00 36.83 3.41
1221 1249 1.929836 GATGCAGTTGACCTCATCGAC 59.070 52.381 0.00 0.00 41.60 4.20
1222 1250 2.299993 GATGCAGTTGACCTCATCGA 57.700 50.000 0.00 0.00 0.00 3.59
1224 1252 0.654683 GCGATGCAGTTGACCTCATC 59.345 55.000 0.00 0.00 33.79 2.92
1253 1281 1.734465 GCCTGAAATCAGAGAACACGG 59.266 52.381 11.94 0.00 46.59 4.94
1257 1285 2.363683 CCCTGCCTGAAATCAGAGAAC 58.636 52.381 11.94 0.00 46.59 3.01
1345 1373 0.858961 GATGTCGTCGTAACCGTCGG 60.859 60.000 10.48 10.48 43.92 4.79
1396 1424 5.016173 ACCAACCATAAGCAAATCTAGCAA 58.984 37.500 0.00 0.00 0.00 3.91
1397 1425 4.599041 ACCAACCATAAGCAAATCTAGCA 58.401 39.130 0.00 0.00 0.00 3.49
1398 1426 5.358160 AGAACCAACCATAAGCAAATCTAGC 59.642 40.000 0.00 0.00 0.00 3.42
1399 1427 7.094205 ACAAGAACCAACCATAAGCAAATCTAG 60.094 37.037 0.00 0.00 0.00 2.43
1678 1719 1.049289 ACAGAAGTATCCCCGAGGCC 61.049 60.000 0.00 0.00 0.00 5.19
1884 1925 2.307392 TGGAGCAGGGCAATAGTTTGTA 59.693 45.455 0.00 0.00 35.17 2.41
1885 1926 1.075374 TGGAGCAGGGCAATAGTTTGT 59.925 47.619 0.00 0.00 35.17 2.83
1886 1927 1.747355 CTGGAGCAGGGCAATAGTTTG 59.253 52.381 0.00 0.00 35.85 2.93
1887 1928 1.957113 GCTGGAGCAGGGCAATAGTTT 60.957 52.381 0.00 0.00 41.59 2.66
1888 1929 0.394899 GCTGGAGCAGGGCAATAGTT 60.395 55.000 0.00 0.00 41.59 2.24
2047 2088 1.407258 GAGAAGTCCCTCTCCATGACG 59.593 57.143 0.00 0.00 36.60 4.35
2121 2162 2.095567 GCTAGTTGAACACTGTGCATGG 60.096 50.000 7.90 0.00 35.97 3.66
2130 2171 7.386848 TCCTACATTACAAAGCTAGTTGAACAC 59.613 37.037 5.15 0.00 32.59 3.32
2139 2180 8.900781 CACTACTACTCCTACATTACAAAGCTA 58.099 37.037 0.00 0.00 0.00 3.32
2144 2185 7.338703 CAGGACACTACTACTCCTACATTACAA 59.661 40.741 0.00 0.00 32.27 2.41
2145 2186 6.827251 CAGGACACTACTACTCCTACATTACA 59.173 42.308 0.00 0.00 32.27 2.41
2146 2187 6.238703 GCAGGACACTACTACTCCTACATTAC 60.239 46.154 0.00 0.00 32.27 1.89
2147 2188 5.826737 GCAGGACACTACTACTCCTACATTA 59.173 44.000 0.00 0.00 32.27 1.90
2148 2189 4.645588 GCAGGACACTACTACTCCTACATT 59.354 45.833 0.00 0.00 32.27 2.71
2149 2190 4.208746 GCAGGACACTACTACTCCTACAT 58.791 47.826 0.00 0.00 32.27 2.29
2150 2191 3.009805 TGCAGGACACTACTACTCCTACA 59.990 47.826 0.00 0.00 32.27 2.74
2151 2192 3.377798 GTGCAGGACACTACTACTCCTAC 59.622 52.174 0.00 0.00 46.41 3.18
2152 2193 3.618351 GTGCAGGACACTACTACTCCTA 58.382 50.000 0.00 0.00 46.41 2.94
2153 2194 2.448453 GTGCAGGACACTACTACTCCT 58.552 52.381 0.00 0.00 46.41 3.69
2154 2195 2.943449 GTGCAGGACACTACTACTCC 57.057 55.000 0.00 0.00 46.41 3.85
2169 2210 1.427809 ATAGATAGCCAGCAGGTGCA 58.572 50.000 4.48 0.00 45.16 4.57
2171 2212 4.348863 AGAAATAGATAGCCAGCAGGTG 57.651 45.455 0.00 0.00 37.19 4.00
2173 2214 3.501445 GCAAGAAATAGATAGCCAGCAGG 59.499 47.826 0.00 0.00 38.23 4.85
2174 2215 3.501445 GGCAAGAAATAGATAGCCAGCAG 59.499 47.826 0.00 0.00 41.63 4.24
2175 2216 3.117926 TGGCAAGAAATAGATAGCCAGCA 60.118 43.478 0.00 0.00 46.25 4.41
2176 2217 3.480470 TGGCAAGAAATAGATAGCCAGC 58.520 45.455 0.00 0.00 46.25 4.85
2179 2220 5.312079 AGTCATGGCAAGAAATAGATAGCC 58.688 41.667 0.00 0.00 42.32 3.93
2180 2221 7.969536 TTAGTCATGGCAAGAAATAGATAGC 57.030 36.000 0.00 0.00 0.00 2.97
2182 2223 8.840321 GCTTTTAGTCATGGCAAGAAATAGATA 58.160 33.333 0.00 0.00 0.00 1.98
2183 2224 7.467811 CGCTTTTAGTCATGGCAAGAAATAGAT 60.468 37.037 0.00 0.00 0.00 1.98
2184 2225 6.183360 CGCTTTTAGTCATGGCAAGAAATAGA 60.183 38.462 0.00 0.00 0.00 1.98
2185 2226 5.967674 CGCTTTTAGTCATGGCAAGAAATAG 59.032 40.000 0.00 0.00 0.00 1.73
2186 2227 5.676079 GCGCTTTTAGTCATGGCAAGAAATA 60.676 40.000 0.00 0.00 0.00 1.40
2187 2228 4.737054 CGCTTTTAGTCATGGCAAGAAAT 58.263 39.130 0.00 0.00 0.00 2.17
2188 2229 3.611530 GCGCTTTTAGTCATGGCAAGAAA 60.612 43.478 0.00 0.00 0.00 2.52
2189 2230 2.095263 GCGCTTTTAGTCATGGCAAGAA 60.095 45.455 0.00 0.00 0.00 2.52
2190 2231 1.468520 GCGCTTTTAGTCATGGCAAGA 59.531 47.619 0.00 0.00 0.00 3.02
2191 2232 1.791555 CGCGCTTTTAGTCATGGCAAG 60.792 52.381 5.56 0.00 0.00 4.01
2192 2233 0.167908 CGCGCTTTTAGTCATGGCAA 59.832 50.000 5.56 0.00 0.00 4.52
2193 2234 1.793581 CGCGCTTTTAGTCATGGCA 59.206 52.632 5.56 0.00 0.00 4.92
2470 2534 2.620115 TCGTGACACGGACTCTTTTACT 59.380 45.455 26.55 0.00 42.81 2.24
2471 2535 2.978489 CTCGTGACACGGACTCTTTTAC 59.022 50.000 26.55 0.00 42.81 2.01
2472 2536 2.606308 GCTCGTGACACGGACTCTTTTA 60.606 50.000 26.55 4.20 42.81 1.52
2530 2594 1.064505 CGCATTTGGATTCGCATCTGT 59.935 47.619 0.00 0.00 0.00 3.41
2722 2794 2.442087 CTTTGATTCCCCCGCCCC 60.442 66.667 0.00 0.00 0.00 5.80
2736 2808 1.673920 GAGACGATCTCGCTCTCCTTT 59.326 52.381 15.28 0.00 44.43 3.11
2772 2844 4.850193 CCAGGTGGGCATCAAACT 57.150 55.556 0.00 0.00 0.00 2.66
3035 3111 4.620723 TCATACTGGACAGTCCCATTAGT 58.379 43.478 17.59 15.21 42.54 2.24
3074 3152 4.576873 TGACGAACTGGTTAATCAGCAAAA 59.423 37.500 15.84 0.00 38.26 2.44
3190 3268 7.770801 TTGAGTTGACACGAATATTAGATGG 57.229 36.000 2.28 0.00 0.00 3.51
3203 3455 4.152045 CAGAGCTGAGATTTGAGTTGACAC 59.848 45.833 0.00 0.00 0.00 3.67
3261 3514 3.293311 ACAAAGCATGATGAGCAACAC 57.707 42.857 0.00 0.00 0.00 3.32
3289 3542 9.478019 CTTTTCTAAACTTAACATGTAGCATCG 57.522 33.333 0.00 0.00 0.00 3.84
3303 3556 8.897872 TTCCGATAGTGTTCTTTTCTAAACTT 57.102 30.769 0.00 0.00 0.00 2.66
3352 3607 0.393820 CCACAAAATTGCACAGGCCT 59.606 50.000 0.00 0.00 40.13 5.19
3383 3638 2.604969 TTTCGATTGGCGCTGTTAAC 57.395 45.000 7.64 0.00 40.61 2.01
3390 3645 2.538037 ACAAAACTTTTTCGATTGGCGC 59.462 40.909 0.00 0.00 40.61 6.53
3451 3706 2.805295 CGCCGTTGAAGATGCCCTTATA 60.805 50.000 0.00 0.00 34.68 0.98
3452 3707 1.680338 GCCGTTGAAGATGCCCTTAT 58.320 50.000 0.00 0.00 34.68 1.73
3486 3741 1.300465 CCATGGACGGATGCGAGAG 60.300 63.158 15.49 0.00 0.00 3.20
3497 3752 1.139853 GATCCTCACCTGTCCATGGAC 59.860 57.143 33.97 33.97 44.77 4.02
3504 3759 1.134848 GCAGACTGATCCTCACCTGTC 60.135 57.143 6.65 0.00 29.78 3.51
3508 3763 1.142748 CCGCAGACTGATCCTCACC 59.857 63.158 6.65 0.00 0.00 4.02
3524 3779 4.873129 CTCCCGCATCCGTGTCCG 62.873 72.222 0.00 0.00 0.00 4.79
3545 3800 2.434884 CGAGCAGCGTTGGATGGT 60.435 61.111 0.16 0.00 43.98 3.55
3555 3810 8.360756 AAAGTATTTGAAATGTATGCGAGCAGC 61.361 37.037 3.58 0.00 41.65 5.25
3556 3811 6.052840 AGTATTTGAAATGTATGCGAGCAG 57.947 37.500 3.58 0.00 0.00 4.24
3607 3862 7.007905 CGGTTTATATGAAATCCGTTGTGTTTG 59.992 37.037 2.23 0.00 37.09 2.93
3666 3921 4.693566 TGCACGCAGTTTTAGCTATTTAGT 59.306 37.500 0.00 0.00 41.61 2.24
3718 3974 6.473758 AGACTAGTGTAGTGTATCTGTGTCA 58.526 40.000 0.00 0.00 39.59 3.58
3724 3980 5.055812 GCCGTAGACTAGTGTAGTGTATCT 58.944 45.833 0.00 0.00 39.59 1.98
3753 4009 3.757248 AAGACATGGGATCCGCCGC 62.757 63.158 5.45 0.00 37.63 6.53
3754 4010 1.595382 GAAGACATGGGATCCGCCG 60.595 63.158 5.45 0.00 37.63 6.46
3755 4011 1.227973 GGAAGACATGGGATCCGCC 60.228 63.158 5.45 0.00 0.00 6.13
3756 4012 1.227973 GGGAAGACATGGGATCCGC 60.228 63.158 5.45 0.00 32.56 5.54
3757 4013 1.344953 TGGGGAAGACATGGGATCCG 61.345 60.000 5.45 0.00 32.56 4.18
3758 4014 1.152649 ATGGGGAAGACATGGGATCC 58.847 55.000 1.92 1.92 0.00 3.36
3759 4015 2.283145 CATGGGGAAGACATGGGATC 57.717 55.000 0.00 0.00 41.46 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.