Multiple sequence alignment - TraesCS2D01G225300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G225300 chr2D 100.000 6883 0 0 1 6883 192999668 192992786 0.000000e+00 12711
1 TraesCS2D01G225300 chr2B 96.440 6292 159 34 1 6270 249213756 249207508 0.000000e+00 10318
2 TraesCS2D01G225300 chr2B 89.362 329 21 9 6569 6883 788061787 788061459 1.080000e-107 401
3 TraesCS2D01G225300 chr2B 92.683 164 9 3 6389 6551 249202503 249202342 4.150000e-57 233
4 TraesCS2D01G225300 chr2B 95.726 117 1 2 6269 6382 249207349 249207234 1.180000e-42 185
5 TraesCS2D01G225300 chr2A 97.902 2574 39 5 2709 5278 206856690 206854128 0.000000e+00 4440
6 TraesCS2D01G225300 chr2A 97.623 2398 45 9 115 2507 206859077 206856687 0.000000e+00 4102
7 TraesCS2D01G225300 chr2A 97.828 1289 27 1 5264 6551 206854112 206852824 0.000000e+00 2224
8 TraesCS2D01G225300 chr2A 94.620 316 14 3 6569 6883 770157893 770158206 2.890000e-133 486
9 TraesCS2D01G225300 chr2A 93.189 323 18 4 6563 6883 597197682 597198002 8.080000e-129 472
10 TraesCS2D01G225300 chr2A 93.220 118 8 0 1 118 206862916 206862799 2.550000e-39 174
11 TraesCS2D01G225300 chr7B 91.159 328 18 3 6567 6883 50597981 50597654 1.060000e-117 435
12 TraesCS2D01G225300 chr7B 84.295 312 36 11 6583 6883 12840132 12840441 6.750000e-75 292
13 TraesCS2D01G225300 chr1D 91.223 319 23 4 6569 6883 395797991 395797674 4.930000e-116 429
14 TraesCS2D01G225300 chr5A 90.062 322 25 4 6568 6883 493391564 493391884 1.790000e-110 411
15 TraesCS2D01G225300 chr1A 85.538 325 33 10 6569 6883 438653894 438654214 1.850000e-85 327
16 TraesCS2D01G225300 chr6B 90.000 250 23 2 6636 6883 526120836 526120587 8.610000e-84 322
17 TraesCS2D01G225300 chr6A 96.111 180 7 0 4388 4567 153373069 153372890 1.880000e-75 294
18 TraesCS2D01G225300 chr4D 95.556 180 8 0 4388 4567 482703444 482703623 8.730000e-74 289
19 TraesCS2D01G225300 chr3D 95.556 180 8 0 4388 4567 422517613 422517792 8.730000e-74 289
20 TraesCS2D01G225300 chr5B 95.531 179 8 0 4389 4567 574956625 574956447 3.140000e-73 287
21 TraesCS2D01G225300 chr5B 90.686 204 18 1 4384 4586 126245084 126245287 3.160000e-68 270
22 TraesCS2D01G225300 chr5D 95.028 181 9 0 4387 4567 468170651 468170471 1.130000e-72 285
23 TraesCS2D01G225300 chrUn 91.500 200 16 1 4368 4567 40706934 40706736 2.450000e-69 274


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G225300 chr2D 192992786 192999668 6882 True 12711.0 12711 100.00000 1 6883 1 chr2D.!!$R1 6882
1 TraesCS2D01G225300 chr2B 249207234 249213756 6522 True 5251.5 10318 96.08300 1 6382 2 chr2B.!!$R3 6381
2 TraesCS2D01G225300 chr2A 206852824 206862916 10092 True 2735.0 4440 96.64325 1 6551 4 chr2A.!!$R1 6550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 4481 0.721718 CGATTTTGCCTGACCTCGTC 59.278 55.000 0.00 0.0 0.00 4.20 F
1694 5426 1.168714 GAAAGCGAGGAAGTTGGCAT 58.831 50.000 0.00 0.0 0.00 4.40 F
2543 6275 3.354948 TGCATATGGTTGCTCTGTTCT 57.645 42.857 4.56 0.0 43.18 3.01 F
3713 7453 1.035139 GATTGGTATGCCTTGCCCTG 58.965 55.000 0.16 0.0 35.27 4.45 F
4156 7896 2.103263 CCTGTGGGAGGTATGAAGCTAC 59.897 54.545 0.00 0.0 37.02 3.58 F
4462 8202 2.552373 GGGTTCGAGTCCTGGAAACAAT 60.552 50.000 8.95 0.0 42.06 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2067 5799 1.202110 GCAATGTCAAGACAGCCATCG 60.202 52.381 8.99 0.00 45.48 3.84 R
2930 6670 2.226437 GGATATTACAATGGCCACTGCG 59.774 50.000 15.51 2.26 38.85 5.18 R
4185 7925 2.561733 TCGATTGTCTGGTTCTAGCG 57.438 50.000 0.00 0.00 0.00 4.26 R
4556 8296 0.251341 CCACAAACTAAGGGCAGCCT 60.251 55.000 12.43 0.00 0.00 4.58 R
5810 9587 1.032014 TTCTTTGCCAGTTCCAGTGC 58.968 50.000 0.00 0.00 0.00 4.40 R
5965 9742 1.199327 CGTGAGAACCTTCACTCGCTA 59.801 52.381 0.00 0.00 44.13 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.126071 CGCTACCACCTGTCACCG 60.126 66.667 0.00 0.00 0.00 4.94
91 92 2.590007 CTGCTAGACCATGCCGGC 60.590 66.667 22.73 22.73 39.03 6.13
99 100 4.240103 CCATGCCGGCTGGATCGA 62.240 66.667 30.14 10.72 37.49 3.59
255 3983 1.758906 GAGGAGAGGACGGGGAAGG 60.759 68.421 0.00 0.00 0.00 3.46
298 4026 1.286570 CAACGCATGGAGCTTTGCA 59.713 52.632 14.92 0.00 44.06 4.08
364 4092 1.134907 CAGCAGATTTTGGGTGATGCC 60.135 52.381 0.00 0.00 34.58 4.40
460 4189 4.772624 TCGAAATATGAGTAGATGGAGGGG 59.227 45.833 0.00 0.00 0.00 4.79
529 4258 5.458595 ACCAAGTCTTCCTTTTCTCCAAAT 58.541 37.500 0.00 0.00 0.00 2.32
752 4481 0.721718 CGATTTTGCCTGACCTCGTC 59.278 55.000 0.00 0.00 0.00 4.20
861 4590 4.437930 GCACTTGATCCCATTTTCTCTTCG 60.438 45.833 0.00 0.00 0.00 3.79
988 4718 1.399791 GGCTGCTGCTACATTCTTGAC 59.600 52.381 15.64 0.00 39.59 3.18
1417 5148 4.652421 TGTGAATGTGTTGCAAATGACT 57.348 36.364 0.00 0.00 0.00 3.41
1420 5151 2.443887 ATGTGTTGCAAATGACTGGC 57.556 45.000 0.00 0.00 0.00 4.85
1491 5222 5.726980 ACAATATTCACCACATTGCAACT 57.273 34.783 0.00 0.00 33.82 3.16
1694 5426 1.168714 GAAAGCGAGGAAGTTGGCAT 58.831 50.000 0.00 0.00 0.00 4.40
1790 5522 7.441458 ACTCGTTTTCTTTATGTGCTTCTACTT 59.559 33.333 0.00 0.00 0.00 2.24
2536 6268 7.502696 ACATATTTGATTTGCATATGGTTGCT 58.497 30.769 4.56 0.00 43.18 3.91
2543 6275 3.354948 TGCATATGGTTGCTCTGTTCT 57.645 42.857 4.56 0.00 43.18 3.01
2682 6416 5.450376 AGTAATATTCGTTGCAACTGTCG 57.550 39.130 26.09 13.93 0.00 4.35
2698 6432 7.386573 TGCAACTGTCGTTATTATTTCTCTCAA 59.613 33.333 0.00 0.00 0.00 3.02
2755 6491 3.832527 ACCAAACAGTAAGCATGGAGTT 58.167 40.909 0.00 0.00 35.16 3.01
2756 6492 4.215109 ACCAAACAGTAAGCATGGAGTTT 58.785 39.130 0.00 0.00 35.16 2.66
2786 6522 4.457257 GTCTAAATCAGCCATATTGCTCCC 59.543 45.833 0.00 0.00 40.32 4.30
2880 6620 6.460261 GCTTACATAATGAGAAAAAGGAGGCC 60.460 42.308 0.00 0.00 0.00 5.19
2930 6670 8.699749 GCCAATTTTTCTGTAACTGTTAATCAC 58.300 33.333 1.10 0.00 0.00 3.06
3075 6815 9.994432 CTGAAGTGTTTTACCTGATGATTTATC 57.006 33.333 0.00 0.00 36.29 1.75
3085 6825 5.221803 ACCTGATGATTTATCCAGGCTACAG 60.222 44.000 12.30 0.00 37.49 2.74
3602 7342 9.968743 GACAAGCTTACAATGTAACTTGTATAC 57.031 33.333 30.40 22.42 40.34 1.47
3713 7453 1.035139 GATTGGTATGCCTTGCCCTG 58.965 55.000 0.16 0.00 35.27 4.45
4013 7753 7.751768 AATCTTCTTTTCTCTGGTTTACCTG 57.248 36.000 0.00 0.00 36.82 4.00
4027 7767 9.452287 TCTGGTTTACCTGTGGTTTTATAATAC 57.548 33.333 0.00 0.00 37.09 1.89
4156 7896 2.103263 CCTGTGGGAGGTATGAAGCTAC 59.897 54.545 0.00 0.00 37.02 3.58
4304 8044 3.723154 TGGTGGAAAGTTACTTTAGGGGT 59.277 43.478 10.57 0.00 33.49 4.95
4462 8202 2.552373 GGGTTCGAGTCCTGGAAACAAT 60.552 50.000 8.95 0.00 42.06 2.71
4487 8227 3.806949 TGCAGAAATGTAGGGAAAGGT 57.193 42.857 0.00 0.00 0.00 3.50
4757 8498 8.381636 AGAGCTTCAATAATACAGATTGGCTAT 58.618 33.333 0.00 0.00 34.19 2.97
4767 8508 8.701908 AATACAGATTGGCTATGTCAATTGAT 57.298 30.769 12.12 0.00 38.02 2.57
5463 9234 7.308710 CCAATCAATTTTAAGCAAGTTGCCAAT 60.309 33.333 24.02 13.87 46.52 3.16
5840 9617 5.869649 ACTGGCAAAGAAAACCTACAAAT 57.130 34.783 0.00 0.00 0.00 2.32
6069 9846 2.803956 TCACGTTCTCTGTATCCCACT 58.196 47.619 0.00 0.00 0.00 4.00
6341 10281 6.313519 TGCTCCACTTAAATTATCTCCACT 57.686 37.500 0.00 0.00 0.00 4.00
6467 10407 4.994852 TCACAAACTAATCCAAAGGAGTCG 59.005 41.667 0.00 0.00 34.05 4.18
6504 10444 1.269012 ATGAAATGGGGGTTGTGCTG 58.731 50.000 0.00 0.00 0.00 4.41
6561 10502 9.890629 AAAAACAGAGCTATCATATGTTAGTGA 57.109 29.630 17.97 0.00 33.17 3.41
6564 10505 9.486497 AACAGAGCTATCATATGTTAGTGATTG 57.514 33.333 17.97 14.10 36.53 2.67
6565 10506 8.646004 ACAGAGCTATCATATGTTAGTGATTGT 58.354 33.333 17.97 14.53 36.53 2.71
6583 10524 9.959721 AGTGATTGTAATGTTAACAGATAGGTT 57.040 29.630 14.65 4.88 34.81 3.50
6589 10530 9.158233 TGTAATGTTAACAGATAGGTTTGTAGC 57.842 33.333 14.65 0.00 32.29 3.58
6590 10531 9.379791 GTAATGTTAACAGATAGGTTTGTAGCT 57.620 33.333 14.65 0.00 35.90 3.32
6591 10532 7.849804 ATGTTAACAGATAGGTTTGTAGCTG 57.150 36.000 14.65 0.00 41.34 4.24
6593 10534 6.649141 TGTTAACAGATAGGTTTGTAGCTGTG 59.351 38.462 3.59 0.00 46.43 3.66
6594 10535 4.891992 ACAGATAGGTTTGTAGCTGTGT 57.108 40.909 0.00 0.00 45.62 3.72
6595 10536 5.995565 ACAGATAGGTTTGTAGCTGTGTA 57.004 39.130 0.00 0.00 45.62 2.90
6596 10537 6.354794 ACAGATAGGTTTGTAGCTGTGTAA 57.645 37.500 0.00 0.00 45.62 2.41
6597 10538 6.164176 ACAGATAGGTTTGTAGCTGTGTAAC 58.836 40.000 0.00 0.00 45.62 2.50
6598 10539 5.288712 CAGATAGGTTTGTAGCTGTGTAACG 59.711 44.000 0.00 0.00 42.39 3.18
6599 10540 3.464111 AGGTTTGTAGCTGTGTAACGT 57.536 42.857 0.00 0.00 42.39 3.99
6600 10541 3.128349 AGGTTTGTAGCTGTGTAACGTG 58.872 45.455 0.00 0.00 42.39 4.49
6601 10542 3.125316 GGTTTGTAGCTGTGTAACGTGA 58.875 45.455 0.00 0.00 42.39 4.35
6602 10543 3.060070 GGTTTGTAGCTGTGTAACGTGAC 60.060 47.826 0.00 0.00 42.39 3.67
6603 10544 3.439895 TTGTAGCTGTGTAACGTGACA 57.560 42.857 0.10 0.10 42.39 3.58
6604 10545 3.653539 TGTAGCTGTGTAACGTGACAT 57.346 42.857 9.47 0.00 42.39 3.06
6605 10546 3.313690 TGTAGCTGTGTAACGTGACATG 58.686 45.455 9.47 6.82 42.39 3.21
6606 10547 2.526304 AGCTGTGTAACGTGACATGT 57.474 45.000 9.47 0.00 42.39 3.21
6607 10548 3.653539 AGCTGTGTAACGTGACATGTA 57.346 42.857 9.47 0.00 42.39 2.29
6608 10549 4.188247 AGCTGTGTAACGTGACATGTAT 57.812 40.909 9.47 0.00 42.39 2.29
6609 10550 3.926527 AGCTGTGTAACGTGACATGTATG 59.073 43.478 9.47 0.00 42.39 2.39
6610 10551 3.678072 GCTGTGTAACGTGACATGTATGT 59.322 43.478 9.47 0.00 42.10 2.29
6621 10562 3.120321 ACATGTATGTCACGGTTGTGT 57.880 42.857 0.00 0.00 46.49 3.72
6622 10563 3.472652 ACATGTATGTCACGGTTGTGTT 58.527 40.909 0.00 0.00 46.49 3.32
6623 10564 3.249799 ACATGTATGTCACGGTTGTGTTG 59.750 43.478 0.00 0.00 46.49 3.33
6624 10565 1.600013 TGTATGTCACGGTTGTGTTGC 59.400 47.619 0.00 0.00 46.49 4.17
6625 10566 0.862490 TATGTCACGGTTGTGTTGCG 59.138 50.000 0.00 0.00 46.49 4.85
6626 10567 1.092921 ATGTCACGGTTGTGTTGCGT 61.093 50.000 0.00 0.00 46.49 5.24
6627 10568 1.297304 GTCACGGTTGTGTTGCGTG 60.297 57.895 0.00 0.00 46.49 5.34
6628 10569 2.650602 CACGGTTGTGTTGCGTGC 60.651 61.111 0.00 0.00 41.34 5.34
6629 10570 4.230863 ACGGTTGTGTTGCGTGCG 62.231 61.111 0.00 0.00 0.00 5.34
6630 10571 4.230863 CGGTTGTGTTGCGTGCGT 62.231 61.111 0.00 0.00 0.00 5.24
6631 10572 2.872515 CGGTTGTGTTGCGTGCGTA 61.873 57.895 0.00 0.00 0.00 4.42
6632 10573 1.572447 GGTTGTGTTGCGTGCGTAT 59.428 52.632 0.00 0.00 0.00 3.06
6633 10574 0.040781 GGTTGTGTTGCGTGCGTATT 60.041 50.000 0.00 0.00 0.00 1.89
6634 10575 1.041726 GTTGTGTTGCGTGCGTATTG 58.958 50.000 0.00 0.00 0.00 1.90
6635 10576 0.658368 TTGTGTTGCGTGCGTATTGT 59.342 45.000 0.00 0.00 0.00 2.71
6636 10577 0.041751 TGTGTTGCGTGCGTATTGTG 60.042 50.000 0.00 0.00 0.00 3.33
6637 10578 0.041663 GTGTTGCGTGCGTATTGTGT 60.042 50.000 0.00 0.00 0.00 3.72
6638 10579 1.192757 GTGTTGCGTGCGTATTGTGTA 59.807 47.619 0.00 0.00 0.00 2.90
6639 10580 1.865340 TGTTGCGTGCGTATTGTGTAA 59.135 42.857 0.00 0.00 0.00 2.41
6640 10581 2.480802 TGTTGCGTGCGTATTGTGTAAT 59.519 40.909 0.00 0.00 0.00 1.89
6641 10582 3.088552 GTTGCGTGCGTATTGTGTAATC 58.911 45.455 0.00 0.00 0.00 1.75
6642 10583 2.612604 TGCGTGCGTATTGTGTAATCT 58.387 42.857 0.00 0.00 0.00 2.40
6643 10584 3.771798 TGCGTGCGTATTGTGTAATCTA 58.228 40.909 0.00 0.00 0.00 1.98
6644 10585 3.794564 TGCGTGCGTATTGTGTAATCTAG 59.205 43.478 0.00 0.00 0.00 2.43
6645 10586 3.181774 GCGTGCGTATTGTGTAATCTAGG 59.818 47.826 0.00 0.00 0.00 3.02
6646 10587 3.181774 CGTGCGTATTGTGTAATCTAGGC 59.818 47.826 0.00 0.00 0.00 3.93
6647 10588 4.116961 GTGCGTATTGTGTAATCTAGGCA 58.883 43.478 0.00 0.00 0.00 4.75
6648 10589 4.209288 GTGCGTATTGTGTAATCTAGGCAG 59.791 45.833 0.00 0.00 30.61 4.85
6649 10590 3.741344 GCGTATTGTGTAATCTAGGCAGG 59.259 47.826 0.00 0.00 0.00 4.85
6650 10591 4.739735 GCGTATTGTGTAATCTAGGCAGGT 60.740 45.833 0.00 0.00 0.00 4.00
6651 10592 4.745125 CGTATTGTGTAATCTAGGCAGGTG 59.255 45.833 0.00 0.00 0.00 4.00
6652 10593 3.627395 TTGTGTAATCTAGGCAGGTGG 57.373 47.619 0.00 0.00 0.00 4.61
6653 10594 2.546899 TGTGTAATCTAGGCAGGTGGT 58.453 47.619 0.00 0.00 0.00 4.16
6654 10595 2.910319 TGTGTAATCTAGGCAGGTGGTT 59.090 45.455 0.00 0.00 0.00 3.67
6655 10596 4.098155 TGTGTAATCTAGGCAGGTGGTTA 58.902 43.478 0.00 0.00 0.00 2.85
6656 10597 4.161565 TGTGTAATCTAGGCAGGTGGTTAG 59.838 45.833 0.00 0.00 0.00 2.34
6657 10598 4.404715 GTGTAATCTAGGCAGGTGGTTAGA 59.595 45.833 0.00 0.00 0.00 2.10
6658 10599 4.649674 TGTAATCTAGGCAGGTGGTTAGAG 59.350 45.833 0.00 0.00 0.00 2.43
6659 10600 2.921834 TCTAGGCAGGTGGTTAGAGT 57.078 50.000 0.00 0.00 0.00 3.24
6660 10601 4.537945 ATCTAGGCAGGTGGTTAGAGTA 57.462 45.455 0.00 0.00 0.00 2.59
6661 10602 3.899726 TCTAGGCAGGTGGTTAGAGTAG 58.100 50.000 0.00 0.00 0.00 2.57
6662 10603 2.921834 AGGCAGGTGGTTAGAGTAGA 57.078 50.000 0.00 0.00 0.00 2.59
6663 10604 3.406512 AGGCAGGTGGTTAGAGTAGAT 57.593 47.619 0.00 0.00 0.00 1.98
6664 10605 4.537945 AGGCAGGTGGTTAGAGTAGATA 57.462 45.455 0.00 0.00 0.00 1.98
6665 10606 5.081315 AGGCAGGTGGTTAGAGTAGATAT 57.919 43.478 0.00 0.00 0.00 1.63
6666 10607 4.835615 AGGCAGGTGGTTAGAGTAGATATG 59.164 45.833 0.00 0.00 0.00 1.78
6667 10608 4.833380 GGCAGGTGGTTAGAGTAGATATGA 59.167 45.833 0.00 0.00 0.00 2.15
6668 10609 5.482175 GGCAGGTGGTTAGAGTAGATATGAT 59.518 44.000 0.00 0.00 0.00 2.45
6669 10610 6.350612 GGCAGGTGGTTAGAGTAGATATGATC 60.351 46.154 0.00 0.00 0.00 2.92
6670 10611 6.435904 GCAGGTGGTTAGAGTAGATATGATCT 59.564 42.308 0.00 0.00 43.33 2.75
6671 10612 7.362574 GCAGGTGGTTAGAGTAGATATGATCTC 60.363 44.444 0.00 0.00 40.76 2.75
6672 10613 7.667635 CAGGTGGTTAGAGTAGATATGATCTCA 59.332 40.741 0.00 0.00 40.76 3.27
6673 10614 8.397957 AGGTGGTTAGAGTAGATATGATCTCAT 58.602 37.037 0.00 0.00 40.76 2.90
6674 10615 8.682710 GGTGGTTAGAGTAGATATGATCTCATC 58.317 40.741 0.00 0.00 40.76 2.92
6675 10616 9.461312 GTGGTTAGAGTAGATATGATCTCATCT 57.539 37.037 12.41 12.41 40.76 2.90
6676 10617 9.679661 TGGTTAGAGTAGATATGATCTCATCTC 57.320 37.037 11.46 0.00 40.76 2.75
6677 10618 9.679661 GGTTAGAGTAGATATGATCTCATCTCA 57.320 37.037 11.46 0.00 40.76 3.27
6686 10627 9.871175 AGATATGATCTCATCTCATGTATAGCT 57.129 33.333 7.91 0.00 37.76 3.32
6689 10630 6.932947 TGATCTCATCTCATGTATAGCTTGG 58.067 40.000 0.00 0.00 0.00 3.61
6690 10631 6.723052 TGATCTCATCTCATGTATAGCTTGGA 59.277 38.462 0.00 0.00 0.00 3.53
6691 10632 6.587206 TCTCATCTCATGTATAGCTTGGAG 57.413 41.667 0.00 0.00 0.00 3.86
6692 10633 6.073981 TCTCATCTCATGTATAGCTTGGAGT 58.926 40.000 0.00 0.00 0.00 3.85
6693 10634 7.234355 TCTCATCTCATGTATAGCTTGGAGTA 58.766 38.462 0.00 0.00 0.00 2.59
6694 10635 7.892771 TCTCATCTCATGTATAGCTTGGAGTAT 59.107 37.037 0.00 0.00 0.00 2.12
6695 10636 7.834803 TCATCTCATGTATAGCTTGGAGTATG 58.165 38.462 0.00 0.00 0.00 2.39
6696 10637 6.596309 TCTCATGTATAGCTTGGAGTATGG 57.404 41.667 0.00 0.00 0.00 2.74
6697 10638 5.481824 TCTCATGTATAGCTTGGAGTATGGG 59.518 44.000 0.00 0.00 0.00 4.00
6698 10639 5.155161 TCATGTATAGCTTGGAGTATGGGT 58.845 41.667 0.00 0.00 0.00 4.51
6699 10640 5.246203 TCATGTATAGCTTGGAGTATGGGTC 59.754 44.000 0.00 0.00 0.00 4.46
6700 10641 4.552674 TGTATAGCTTGGAGTATGGGTCA 58.447 43.478 0.00 0.00 0.00 4.02
6701 10642 4.966168 TGTATAGCTTGGAGTATGGGTCAA 59.034 41.667 0.00 0.00 0.00 3.18
6702 10643 4.696479 ATAGCTTGGAGTATGGGTCAAG 57.304 45.455 0.00 0.00 39.46 3.02
6703 10644 2.551270 AGCTTGGAGTATGGGTCAAGA 58.449 47.619 6.16 0.00 38.96 3.02
6704 10645 2.237392 AGCTTGGAGTATGGGTCAAGAC 59.763 50.000 6.16 0.00 38.96 3.01
6705 10646 2.237392 GCTTGGAGTATGGGTCAAGACT 59.763 50.000 6.16 0.00 38.96 3.24
6706 10647 3.451178 GCTTGGAGTATGGGTCAAGACTA 59.549 47.826 6.16 0.00 38.96 2.59
6707 10648 4.680975 GCTTGGAGTATGGGTCAAGACTAC 60.681 50.000 6.16 0.00 38.96 2.73
6708 10649 3.371965 TGGAGTATGGGTCAAGACTACC 58.628 50.000 0.00 0.00 36.19 3.18
6709 10650 3.245839 TGGAGTATGGGTCAAGACTACCA 60.246 47.826 0.00 0.71 38.87 3.25
6710 10651 3.773119 GGAGTATGGGTCAAGACTACCAA 59.227 47.826 0.00 0.00 38.87 3.67
6711 10652 4.382793 GGAGTATGGGTCAAGACTACCAAC 60.383 50.000 0.00 2.75 38.87 3.77
6712 10653 4.426704 AGTATGGGTCAAGACTACCAACT 58.573 43.478 0.00 4.57 38.87 3.16
6713 10654 5.586877 AGTATGGGTCAAGACTACCAACTA 58.413 41.667 0.00 0.00 38.87 2.24
6714 10655 6.203072 AGTATGGGTCAAGACTACCAACTAT 58.797 40.000 0.00 0.00 38.87 2.12
6715 10656 5.615925 ATGGGTCAAGACTACCAACTATC 57.384 43.478 0.00 0.00 38.87 2.08
6716 10657 4.684724 TGGGTCAAGACTACCAACTATCT 58.315 43.478 0.00 0.00 38.87 1.98
6717 10658 4.466370 TGGGTCAAGACTACCAACTATCTG 59.534 45.833 0.00 0.00 38.87 2.90
6718 10659 4.434520 GGTCAAGACTACCAACTATCTGC 58.565 47.826 0.00 0.00 36.96 4.26
6719 10660 4.434520 GTCAAGACTACCAACTATCTGCC 58.565 47.826 0.00 0.00 0.00 4.85
6720 10661 3.130516 TCAAGACTACCAACTATCTGCCG 59.869 47.826 0.00 0.00 0.00 5.69
6721 10662 3.014304 AGACTACCAACTATCTGCCGA 57.986 47.619 0.00 0.00 0.00 5.54
6722 10663 3.567397 AGACTACCAACTATCTGCCGAT 58.433 45.455 0.00 0.00 0.00 4.18
6723 10664 3.570550 AGACTACCAACTATCTGCCGATC 59.429 47.826 0.00 0.00 0.00 3.69
6724 10665 2.628657 ACTACCAACTATCTGCCGATCC 59.371 50.000 0.00 0.00 0.00 3.36
6725 10666 1.794714 ACCAACTATCTGCCGATCCT 58.205 50.000 0.00 0.00 0.00 3.24
6726 10667 2.119495 ACCAACTATCTGCCGATCCTT 58.881 47.619 0.00 0.00 0.00 3.36
6727 10668 2.158900 ACCAACTATCTGCCGATCCTTG 60.159 50.000 0.00 0.00 0.00 3.61
6728 10669 2.158900 CCAACTATCTGCCGATCCTTGT 60.159 50.000 0.00 0.00 0.00 3.16
6729 10670 3.069586 CCAACTATCTGCCGATCCTTGTA 59.930 47.826 0.00 0.00 0.00 2.41
6730 10671 4.051922 CAACTATCTGCCGATCCTTGTAC 58.948 47.826 0.00 0.00 0.00 2.90
6731 10672 3.567397 ACTATCTGCCGATCCTTGTACT 58.433 45.455 0.00 0.00 0.00 2.73
6732 10673 3.961408 ACTATCTGCCGATCCTTGTACTT 59.039 43.478 0.00 0.00 0.00 2.24
6733 10674 2.672961 TCTGCCGATCCTTGTACTTG 57.327 50.000 0.00 0.00 0.00 3.16
6734 10675 1.899814 TCTGCCGATCCTTGTACTTGT 59.100 47.619 0.00 0.00 0.00 3.16
6735 10676 2.301870 TCTGCCGATCCTTGTACTTGTT 59.698 45.455 0.00 0.00 0.00 2.83
6736 10677 2.416547 CTGCCGATCCTTGTACTTGTTG 59.583 50.000 0.00 0.00 0.00 3.33
6737 10678 2.037902 TGCCGATCCTTGTACTTGTTGA 59.962 45.455 0.00 0.00 0.00 3.18
6738 10679 2.673368 GCCGATCCTTGTACTTGTTGAG 59.327 50.000 0.00 0.00 0.00 3.02
6739 10680 2.673368 CCGATCCTTGTACTTGTTGAGC 59.327 50.000 0.00 0.00 0.00 4.26
6740 10681 3.589988 CGATCCTTGTACTTGTTGAGCT 58.410 45.455 0.00 0.00 0.00 4.09
6741 10682 4.381612 CCGATCCTTGTACTTGTTGAGCTA 60.382 45.833 0.00 0.00 0.00 3.32
6742 10683 5.352284 CGATCCTTGTACTTGTTGAGCTAT 58.648 41.667 0.00 0.00 0.00 2.97
6743 10684 6.461092 CCGATCCTTGTACTTGTTGAGCTATA 60.461 42.308 0.00 0.00 0.00 1.31
6744 10685 7.148641 CGATCCTTGTACTTGTTGAGCTATAT 58.851 38.462 0.00 0.00 0.00 0.86
6745 10686 8.297426 CGATCCTTGTACTTGTTGAGCTATATA 58.703 37.037 0.00 0.00 0.00 0.86
6746 10687 9.982651 GATCCTTGTACTTGTTGAGCTATATAA 57.017 33.333 0.00 0.00 0.00 0.98
6747 10688 9.765795 ATCCTTGTACTTGTTGAGCTATATAAC 57.234 33.333 0.00 0.00 0.00 1.89
6748 10689 8.755028 TCCTTGTACTTGTTGAGCTATATAACA 58.245 33.333 0.00 0.00 32.93 2.41
6749 10690 8.818057 CCTTGTACTTGTTGAGCTATATAACAC 58.182 37.037 5.21 0.00 34.38 3.32
6750 10691 9.366216 CTTGTACTTGTTGAGCTATATAACACA 57.634 33.333 5.21 0.00 34.38 3.72
6751 10692 8.697846 TGTACTTGTTGAGCTATATAACACAC 57.302 34.615 5.21 5.27 34.38 3.82
6752 10693 8.308207 TGTACTTGTTGAGCTATATAACACACA 58.692 33.333 5.21 7.06 34.38 3.72
6753 10694 9.314321 GTACTTGTTGAGCTATATAACACACAT 57.686 33.333 5.21 0.00 34.38 3.21
6754 10695 8.201554 ACTTGTTGAGCTATATAACACACATG 57.798 34.615 5.21 0.00 34.38 3.21
6755 10696 7.824289 ACTTGTTGAGCTATATAACACACATGT 59.176 33.333 0.00 0.00 42.46 3.21
6764 10705 4.479303 CACACATGTGTCCCTGCA 57.521 55.556 28.38 0.00 42.83 4.41
6765 10706 2.250646 CACACATGTGTCCCTGCAG 58.749 57.895 28.38 11.89 42.83 4.41
6766 10707 1.073722 ACACATGTGTCCCTGCAGG 59.926 57.895 25.76 26.87 40.24 4.85
6767 10708 1.376086 CACATGTGTCCCTGCAGGA 59.624 57.895 34.91 17.23 44.91 3.86
6783 10724 3.637998 CAGGATTGCATATGCTTCCAC 57.362 47.619 33.11 20.13 42.52 4.02
6784 10725 2.295349 CAGGATTGCATATGCTTCCACC 59.705 50.000 33.11 24.98 42.52 4.61
6785 10726 2.091720 AGGATTGCATATGCTTCCACCA 60.092 45.455 33.11 13.28 42.52 4.17
6786 10727 2.895404 GGATTGCATATGCTTCCACCAT 59.105 45.455 29.87 13.65 40.96 3.55
6787 10728 3.057033 GGATTGCATATGCTTCCACCATC 60.057 47.826 29.87 18.73 40.96 3.51
6788 10729 2.732844 TGCATATGCTTCCACCATCA 57.267 45.000 27.13 1.01 42.66 3.07
6789 10730 2.300433 TGCATATGCTTCCACCATCAC 58.700 47.619 27.13 0.00 42.66 3.06
6790 10731 2.300433 GCATATGCTTCCACCATCACA 58.700 47.619 20.64 0.00 38.21 3.58
6791 10732 2.689471 GCATATGCTTCCACCATCACAA 59.311 45.455 20.64 0.00 38.21 3.33
6792 10733 3.319972 GCATATGCTTCCACCATCACAAT 59.680 43.478 20.64 0.00 38.21 2.71
6793 10734 4.202182 GCATATGCTTCCACCATCACAATT 60.202 41.667 20.64 0.00 38.21 2.32
6794 10735 5.682990 GCATATGCTTCCACCATCACAATTT 60.683 40.000 20.64 0.00 38.21 1.82
6795 10736 4.895668 ATGCTTCCACCATCACAATTTT 57.104 36.364 0.00 0.00 0.00 1.82
6796 10737 5.999205 ATGCTTCCACCATCACAATTTTA 57.001 34.783 0.00 0.00 0.00 1.52
6797 10738 5.132897 TGCTTCCACCATCACAATTTTAC 57.867 39.130 0.00 0.00 0.00 2.01
6798 10739 4.586421 TGCTTCCACCATCACAATTTTACA 59.414 37.500 0.00 0.00 0.00 2.41
6799 10740 5.245751 TGCTTCCACCATCACAATTTTACAT 59.754 36.000 0.00 0.00 0.00 2.29
6800 10741 5.577945 GCTTCCACCATCACAATTTTACATG 59.422 40.000 0.00 0.00 0.00 3.21
6801 10742 5.657826 TCCACCATCACAATTTTACATGG 57.342 39.130 0.00 0.00 40.05 3.66
6802 10743 5.083122 TCCACCATCACAATTTTACATGGT 58.917 37.500 0.00 0.00 46.72 3.55
6803 10744 6.249192 TCCACCATCACAATTTTACATGGTA 58.751 36.000 6.95 0.00 44.47 3.25
6804 10745 6.721668 TCCACCATCACAATTTTACATGGTAA 59.278 34.615 6.95 0.00 44.47 2.85
6805 10746 6.811170 CCACCATCACAATTTTACATGGTAAC 59.189 38.462 6.95 0.00 44.47 2.50
6806 10747 6.811170 CACCATCACAATTTTACATGGTAACC 59.189 38.462 6.95 0.00 44.47 2.85
6807 10748 6.495181 ACCATCACAATTTTACATGGTAACCA 59.505 34.615 0.00 0.00 44.45 3.67
6808 10749 7.035004 CCATCACAATTTTACATGGTAACCAG 58.965 38.462 0.00 0.00 36.75 4.00
6809 10750 7.093988 CCATCACAATTTTACATGGTAACCAGA 60.094 37.037 0.00 0.00 36.75 3.86
6810 10751 7.447374 TCACAATTTTACATGGTAACCAGAG 57.553 36.000 0.00 0.00 36.75 3.35
6811 10752 6.072175 TCACAATTTTACATGGTAACCAGAGC 60.072 38.462 0.00 0.00 36.75 4.09
6812 10753 5.185056 ACAATTTTACATGGTAACCAGAGCC 59.815 40.000 0.00 0.00 36.75 4.70
6813 10754 4.374689 TTTTACATGGTAACCAGAGCCA 57.625 40.909 0.00 0.00 36.75 4.75
6814 10755 4.584638 TTTACATGGTAACCAGAGCCAT 57.415 40.909 0.00 0.00 43.14 4.40
6815 10756 2.717639 ACATGGTAACCAGAGCCATC 57.282 50.000 0.00 0.00 40.68 3.51
6816 10757 1.212935 ACATGGTAACCAGAGCCATCC 59.787 52.381 0.00 0.00 40.68 3.51
6817 10758 1.492176 CATGGTAACCAGAGCCATCCT 59.508 52.381 0.00 0.00 40.68 3.24
6818 10759 1.204146 TGGTAACCAGAGCCATCCTC 58.796 55.000 0.00 0.00 41.07 3.71
6819 10760 0.105039 GGTAACCAGAGCCATCCTCG 59.895 60.000 0.00 0.00 45.54 4.63
6820 10761 1.112113 GTAACCAGAGCCATCCTCGA 58.888 55.000 0.00 0.00 45.54 4.04
6821 10762 1.067821 GTAACCAGAGCCATCCTCGAG 59.932 57.143 5.13 5.13 45.54 4.04
6822 10763 1.965754 AACCAGAGCCATCCTCGAGC 61.966 60.000 6.99 0.00 45.54 5.03
6823 10764 2.429767 CCAGAGCCATCCTCGAGCA 61.430 63.158 6.99 0.00 45.54 4.26
6824 10765 1.227205 CAGAGCCATCCTCGAGCAC 60.227 63.158 6.99 0.00 45.54 4.40
6825 10766 1.683707 AGAGCCATCCTCGAGCACA 60.684 57.895 6.99 0.00 45.54 4.57
6826 10767 1.047596 AGAGCCATCCTCGAGCACAT 61.048 55.000 6.99 0.00 45.54 3.21
6827 10768 0.599728 GAGCCATCCTCGAGCACATC 60.600 60.000 6.99 0.00 0.00 3.06
6828 10769 1.596477 GCCATCCTCGAGCACATCC 60.596 63.158 6.99 0.00 0.00 3.51
6829 10770 1.825341 CCATCCTCGAGCACATCCA 59.175 57.895 6.99 0.00 0.00 3.41
6830 10771 0.395686 CCATCCTCGAGCACATCCAT 59.604 55.000 6.99 0.00 0.00 3.41
6831 10772 1.509703 CATCCTCGAGCACATCCATG 58.490 55.000 6.99 0.00 0.00 3.66
6832 10773 0.395686 ATCCTCGAGCACATCCATGG 59.604 55.000 6.99 4.97 0.00 3.66
6833 10774 1.890979 CCTCGAGCACATCCATGGC 60.891 63.158 6.96 0.00 0.00 4.40
6834 10775 2.202919 TCGAGCACATCCATGGCG 60.203 61.111 6.96 2.77 0.00 5.69
6835 10776 2.512286 CGAGCACATCCATGGCGT 60.512 61.111 6.96 3.53 0.00 5.68
6836 10777 2.528743 CGAGCACATCCATGGCGTC 61.529 63.158 6.96 1.76 0.00 5.19
6837 10778 1.153289 GAGCACATCCATGGCGTCT 60.153 57.895 6.96 6.37 0.00 4.18
6838 10779 0.745845 GAGCACATCCATGGCGTCTT 60.746 55.000 6.96 0.00 0.00 3.01
6839 10780 0.745845 AGCACATCCATGGCGTCTTC 60.746 55.000 6.96 0.00 0.00 2.87
6840 10781 1.026182 GCACATCCATGGCGTCTTCA 61.026 55.000 6.96 0.00 0.00 3.02
6841 10782 1.452110 CACATCCATGGCGTCTTCAA 58.548 50.000 6.96 0.00 0.00 2.69
6842 10783 1.399440 CACATCCATGGCGTCTTCAAG 59.601 52.381 6.96 0.00 0.00 3.02
6843 10784 1.003580 ACATCCATGGCGTCTTCAAGT 59.996 47.619 6.96 0.00 0.00 3.16
6844 10785 2.086869 CATCCATGGCGTCTTCAAGTT 58.913 47.619 6.96 0.00 0.00 2.66
6845 10786 1.808411 TCCATGGCGTCTTCAAGTTC 58.192 50.000 6.96 0.00 0.00 3.01
6846 10787 0.804989 CCATGGCGTCTTCAAGTTCC 59.195 55.000 0.00 0.00 0.00 3.62
6847 10788 1.611673 CCATGGCGTCTTCAAGTTCCT 60.612 52.381 0.00 0.00 0.00 3.36
6848 10789 2.154462 CATGGCGTCTTCAAGTTCCTT 58.846 47.619 0.00 0.00 0.00 3.36
6849 10790 1.878953 TGGCGTCTTCAAGTTCCTTC 58.121 50.000 0.00 0.00 0.00 3.46
6850 10791 1.157585 GGCGTCTTCAAGTTCCTTCC 58.842 55.000 0.00 0.00 0.00 3.46
6851 10792 1.157585 GCGTCTTCAAGTTCCTTCCC 58.842 55.000 0.00 0.00 0.00 3.97
6852 10793 1.542547 GCGTCTTCAAGTTCCTTCCCA 60.543 52.381 0.00 0.00 0.00 4.37
6853 10794 2.876079 GCGTCTTCAAGTTCCTTCCCAT 60.876 50.000 0.00 0.00 0.00 4.00
6854 10795 3.003480 CGTCTTCAAGTTCCTTCCCATC 58.997 50.000 0.00 0.00 0.00 3.51
6855 10796 3.348119 GTCTTCAAGTTCCTTCCCATCC 58.652 50.000 0.00 0.00 0.00 3.51
6856 10797 3.009584 GTCTTCAAGTTCCTTCCCATCCT 59.990 47.826 0.00 0.00 0.00 3.24
6857 10798 3.264450 TCTTCAAGTTCCTTCCCATCCTC 59.736 47.826 0.00 0.00 0.00 3.71
6858 10799 1.555075 TCAAGTTCCTTCCCATCCTCG 59.445 52.381 0.00 0.00 0.00 4.63
6859 10800 0.253327 AAGTTCCTTCCCATCCTCGC 59.747 55.000 0.00 0.00 0.00 5.03
6860 10801 1.153147 GTTCCTTCCCATCCTCGCC 60.153 63.158 0.00 0.00 0.00 5.54
6861 10802 1.615124 TTCCTTCCCATCCTCGCCA 60.615 57.895 0.00 0.00 0.00 5.69
6862 10803 0.988145 TTCCTTCCCATCCTCGCCAT 60.988 55.000 0.00 0.00 0.00 4.40
6863 10804 0.988145 TCCTTCCCATCCTCGCCATT 60.988 55.000 0.00 0.00 0.00 3.16
6864 10805 0.536006 CCTTCCCATCCTCGCCATTC 60.536 60.000 0.00 0.00 0.00 2.67
6865 10806 0.882042 CTTCCCATCCTCGCCATTCG 60.882 60.000 0.00 0.00 40.15 3.34
6866 10807 2.940890 TTCCCATCCTCGCCATTCGC 62.941 60.000 0.00 0.00 38.27 4.70
6867 10808 2.203056 CCATCCTCGCCATTCGCA 60.203 61.111 0.00 0.00 37.30 5.10
6868 10809 2.537560 CCATCCTCGCCATTCGCAC 61.538 63.158 0.00 0.00 37.30 5.34
6869 10810 1.815003 CATCCTCGCCATTCGCACA 60.815 57.895 0.00 0.00 37.30 4.57
6870 10811 1.815421 ATCCTCGCCATTCGCACAC 60.815 57.895 0.00 0.00 37.30 3.82
6871 10812 3.853330 CCTCGCCATTCGCACACG 61.853 66.667 0.00 0.00 42.01 4.49
6872 10813 4.505217 CTCGCCATTCGCACACGC 62.505 66.667 0.00 0.00 39.84 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 2.974698 GCCCGGCAATCGATCCAG 60.975 66.667 3.91 0.00 42.43 3.86
122 123 3.678951 GAGAGACTGCAGCAGGGGC 62.679 68.421 26.38 14.69 35.51 5.80
417 4145 3.610911 GAAACGATGATTTGGGTCTCCT 58.389 45.455 0.00 0.00 0.00 3.69
431 4159 7.658261 TCCATCTACTCATATTTCGAAACGAT 58.342 34.615 13.81 7.02 35.23 3.73
529 4258 3.326880 ACTTCGCCTTCTCCTTTTCCTTA 59.673 43.478 0.00 0.00 0.00 2.69
861 4590 4.368874 AAAAATGGCAAAAGCAAACCAC 57.631 36.364 0.00 0.00 34.36 4.16
1417 5148 6.827586 ATTAAGAAACAAATAGTTCGGCCA 57.172 33.333 2.24 0.00 40.26 5.36
1491 5222 9.391006 GATGTGTGTTCAGGAAAACCTATATAA 57.609 33.333 0.11 0.00 0.00 0.98
1694 5426 9.455144 TTCCTATCTCTAATTGTATTAACCCCA 57.545 33.333 0.00 0.00 0.00 4.96
1799 5531 7.801716 TGCTTGAAAGTAAGTAACATTGAGT 57.198 32.000 0.00 0.00 0.00 3.41
2067 5799 1.202110 GCAATGTCAAGACAGCCATCG 60.202 52.381 8.99 0.00 45.48 3.84
2143 5875 8.094798 ACAATAGCGTATTTTGAAACTCAGAA 57.905 30.769 0.00 0.00 0.00 3.02
2144 5876 7.667043 ACAATAGCGTATTTTGAAACTCAGA 57.333 32.000 0.00 0.00 0.00 3.27
2698 6432 8.621532 TCAGACATAATTCAACTTGTAGCTTT 57.378 30.769 0.00 0.00 0.00 3.51
2763 6499 4.457257 GGGAGCAATATGGCTGATTTAGAC 59.543 45.833 10.04 0.00 45.99 2.59
2880 6620 3.144506 GCTCCTGATGATACCCACAATG 58.855 50.000 0.00 0.00 0.00 2.82
2930 6670 2.226437 GGATATTACAATGGCCACTGCG 59.774 50.000 15.51 2.26 38.85 5.18
3075 6815 3.056250 CCATCTAGCATACTGTAGCCTGG 60.056 52.174 0.00 0.00 0.00 4.45
3085 6825 5.411053 GCATTCTTCCTTCCATCTAGCATAC 59.589 44.000 0.00 0.00 0.00 2.39
3350 7090 8.423906 AGAGTCAAAGTAGAGAAACATAAGGA 57.576 34.615 0.00 0.00 0.00 3.36
3713 7453 5.803967 GGAAAGATGTCATGAGAAAACATGC 59.196 40.000 0.00 0.00 44.79 4.06
3965 7705 8.731275 TTAGATGTTTCACAATATGATCGGTT 57.269 30.769 0.00 0.00 37.11 4.44
4027 7767 3.459232 TCTGTGTCCAGAACTCAACAG 57.541 47.619 0.00 0.00 44.67 3.16
4185 7925 2.561733 TCGATTGTCTGGTTCTAGCG 57.438 50.000 0.00 0.00 0.00 4.26
4304 8044 3.499338 AGCCAACAGGATTTTGTGATCA 58.501 40.909 0.00 0.00 0.00 2.92
4361 8101 5.304686 AGACTCCACAAACTACATTTCCA 57.695 39.130 0.00 0.00 0.00 3.53
4487 8227 4.163458 CCACTTTGGGTCTATAGTAGGCAA 59.837 45.833 0.00 0.00 32.67 4.52
4556 8296 0.251341 CCACAAACTAAGGGCAGCCT 60.251 55.000 12.43 0.00 0.00 4.58
4696 8436 8.299262 TGTCGAGAGTAATGAAAAAGAGAAAG 57.701 34.615 0.00 0.00 0.00 2.62
4757 8498 8.581578 TGTAGACAGTGTACTTATCAATTGACA 58.418 33.333 11.07 0.00 0.00 3.58
4767 8508 5.142639 ACCAGGTTGTAGACAGTGTACTTA 58.857 41.667 9.18 0.00 0.00 2.24
5810 9587 1.032014 TTCTTTGCCAGTTCCAGTGC 58.968 50.000 0.00 0.00 0.00 4.40
5840 9617 9.175312 TGTACCTGTAAAATGAACAAAGTTACA 57.825 29.630 0.00 0.00 34.44 2.41
5965 9742 1.199327 CGTGAGAACCTTCACTCGCTA 59.801 52.381 0.00 0.00 44.13 4.26
6069 9846 8.882736 CATGTCTGTACAAGCATATGAACTTAA 58.117 33.333 6.97 0.00 39.58 1.85
6467 10407 7.274250 CCATTTCATTAGCTTCTTTTACAGCAC 59.726 37.037 0.00 0.00 38.61 4.40
6504 10444 2.095212 CCGGAGCTTTCCTTGCTTTTAC 60.095 50.000 0.00 0.00 41.30 2.01
6511 10451 0.875059 GACAACCGGAGCTTTCCTTG 59.125 55.000 9.46 1.26 0.00 3.61
6519 10459 1.900245 TTTTTAGGGACAACCGGAGC 58.100 50.000 9.46 0.00 46.96 4.70
6557 10498 9.959721 AACCTATCTGTTAACATTACAATCACT 57.040 29.630 9.13 0.00 0.00 3.41
6563 10504 9.158233 GCTACAAACCTATCTGTTAACATTACA 57.842 33.333 9.13 0.00 0.00 2.41
6564 10505 9.379791 AGCTACAAACCTATCTGTTAACATTAC 57.620 33.333 9.13 0.00 0.00 1.89
6565 10506 9.378551 CAGCTACAAACCTATCTGTTAACATTA 57.621 33.333 9.13 0.78 0.00 1.90
6566 10507 7.883311 ACAGCTACAAACCTATCTGTTAACATT 59.117 33.333 9.13 2.65 31.51 2.71
6567 10508 7.334421 CACAGCTACAAACCTATCTGTTAACAT 59.666 37.037 9.13 0.00 33.08 2.71
6568 10509 6.649141 CACAGCTACAAACCTATCTGTTAACA 59.351 38.462 8.28 8.28 33.08 2.41
6569 10510 6.649557 ACACAGCTACAAACCTATCTGTTAAC 59.350 38.462 0.00 0.00 33.08 2.01
6570 10511 6.765403 ACACAGCTACAAACCTATCTGTTAA 58.235 36.000 0.00 0.00 33.08 2.01
6571 10512 6.354794 ACACAGCTACAAACCTATCTGTTA 57.645 37.500 0.00 0.00 33.08 2.41
6572 10513 5.228945 ACACAGCTACAAACCTATCTGTT 57.771 39.130 0.00 0.00 33.08 3.16
6573 10514 4.891992 ACACAGCTACAAACCTATCTGT 57.108 40.909 0.00 0.00 35.42 3.41
6574 10515 5.288712 CGTTACACAGCTACAAACCTATCTG 59.711 44.000 0.00 0.00 0.00 2.90
6575 10516 5.047519 ACGTTACACAGCTACAAACCTATCT 60.048 40.000 0.00 0.00 0.00 1.98
6576 10517 5.061808 CACGTTACACAGCTACAAACCTATC 59.938 44.000 0.00 0.00 0.00 2.08
6577 10518 4.927425 CACGTTACACAGCTACAAACCTAT 59.073 41.667 0.00 0.00 0.00 2.57
6578 10519 4.037803 TCACGTTACACAGCTACAAACCTA 59.962 41.667 0.00 0.00 0.00 3.08
6579 10520 3.128349 CACGTTACACAGCTACAAACCT 58.872 45.455 0.00 0.00 0.00 3.50
6580 10521 3.060070 GTCACGTTACACAGCTACAAACC 60.060 47.826 0.00 0.00 0.00 3.27
6581 10522 3.552699 TGTCACGTTACACAGCTACAAAC 59.447 43.478 0.00 0.00 0.00 2.93
6582 10523 3.783191 TGTCACGTTACACAGCTACAAA 58.217 40.909 0.00 0.00 0.00 2.83
6583 10524 3.439895 TGTCACGTTACACAGCTACAA 57.560 42.857 0.00 0.00 0.00 2.41
6584 10525 3.243602 ACATGTCACGTTACACAGCTACA 60.244 43.478 4.39 0.00 30.75 2.74
6585 10526 3.314553 ACATGTCACGTTACACAGCTAC 58.685 45.455 4.39 0.00 30.75 3.58
6586 10527 3.653539 ACATGTCACGTTACACAGCTA 57.346 42.857 4.39 0.00 30.75 3.32
6587 10528 2.526304 ACATGTCACGTTACACAGCT 57.474 45.000 4.39 0.00 30.75 4.24
6588 10529 3.678072 ACATACATGTCACGTTACACAGC 59.322 43.478 4.39 0.00 35.87 4.40
6601 10542 3.120321 ACACAACCGTGACATACATGT 57.880 42.857 2.69 2.69 46.80 3.21
6602 10543 3.809234 CAACACAACCGTGACATACATG 58.191 45.455 0.00 0.00 46.80 3.21
6603 10544 2.225491 GCAACACAACCGTGACATACAT 59.775 45.455 0.00 0.00 46.80 2.29
6604 10545 1.600013 GCAACACAACCGTGACATACA 59.400 47.619 0.00 0.00 46.80 2.29
6605 10546 1.397945 CGCAACACAACCGTGACATAC 60.398 52.381 0.00 0.00 46.80 2.39
6606 10547 0.862490 CGCAACACAACCGTGACATA 59.138 50.000 0.00 0.00 46.80 2.29
6607 10548 1.092921 ACGCAACACAACCGTGACAT 61.093 50.000 0.00 0.00 46.80 3.06
6608 10549 1.742140 ACGCAACACAACCGTGACA 60.742 52.632 0.00 0.00 46.80 3.58
6609 10550 3.095032 ACGCAACACAACCGTGAC 58.905 55.556 0.00 0.00 46.80 3.67
6612 10553 4.230863 CGCACGCAACACAACCGT 62.231 61.111 0.00 0.00 35.29 4.83
6613 10554 2.165362 ATACGCACGCAACACAACCG 62.165 55.000 0.00 0.00 0.00 4.44
6614 10555 0.040781 AATACGCACGCAACACAACC 60.041 50.000 0.00 0.00 0.00 3.77
6615 10556 1.041726 CAATACGCACGCAACACAAC 58.958 50.000 0.00 0.00 0.00 3.32
6616 10557 0.658368 ACAATACGCACGCAACACAA 59.342 45.000 0.00 0.00 0.00 3.33
6617 10558 0.041751 CACAATACGCACGCAACACA 60.042 50.000 0.00 0.00 0.00 3.72
6618 10559 0.041663 ACACAATACGCACGCAACAC 60.042 50.000 0.00 0.00 0.00 3.32
6619 10560 1.499049 TACACAATACGCACGCAACA 58.501 45.000 0.00 0.00 0.00 3.33
6620 10561 2.580729 TTACACAATACGCACGCAAC 57.419 45.000 0.00 0.00 0.00 4.17
6621 10562 2.997303 AGATTACACAATACGCACGCAA 59.003 40.909 0.00 0.00 0.00 4.85
6622 10563 2.612604 AGATTACACAATACGCACGCA 58.387 42.857 0.00 0.00 0.00 5.24
6623 10564 3.181774 CCTAGATTACACAATACGCACGC 59.818 47.826 0.00 0.00 0.00 5.34
6624 10565 3.181774 GCCTAGATTACACAATACGCACG 59.818 47.826 0.00 0.00 0.00 5.34
6625 10566 4.116961 TGCCTAGATTACACAATACGCAC 58.883 43.478 0.00 0.00 0.00 5.34
6626 10567 4.368315 CTGCCTAGATTACACAATACGCA 58.632 43.478 0.00 0.00 0.00 5.24
6627 10568 3.741344 CCTGCCTAGATTACACAATACGC 59.259 47.826 0.00 0.00 0.00 4.42
6628 10569 4.745125 CACCTGCCTAGATTACACAATACG 59.255 45.833 0.00 0.00 0.00 3.06
6629 10570 5.057149 CCACCTGCCTAGATTACACAATAC 58.943 45.833 0.00 0.00 0.00 1.89
6630 10571 4.719773 ACCACCTGCCTAGATTACACAATA 59.280 41.667 0.00 0.00 0.00 1.90
6631 10572 3.523564 ACCACCTGCCTAGATTACACAAT 59.476 43.478 0.00 0.00 0.00 2.71
6632 10573 2.910319 ACCACCTGCCTAGATTACACAA 59.090 45.455 0.00 0.00 0.00 3.33
6633 10574 2.546899 ACCACCTGCCTAGATTACACA 58.453 47.619 0.00 0.00 0.00 3.72
6634 10575 3.629142 AACCACCTGCCTAGATTACAC 57.371 47.619 0.00 0.00 0.00 2.90
6635 10576 4.616553 TCTAACCACCTGCCTAGATTACA 58.383 43.478 0.00 0.00 0.00 2.41
6636 10577 4.650131 ACTCTAACCACCTGCCTAGATTAC 59.350 45.833 0.00 0.00 0.00 1.89
6637 10578 4.880164 ACTCTAACCACCTGCCTAGATTA 58.120 43.478 0.00 0.00 0.00 1.75
6638 10579 3.725634 ACTCTAACCACCTGCCTAGATT 58.274 45.455 0.00 0.00 0.00 2.40
6639 10580 3.406512 ACTCTAACCACCTGCCTAGAT 57.593 47.619 0.00 0.00 0.00 1.98
6640 10581 2.921834 ACTCTAACCACCTGCCTAGA 57.078 50.000 0.00 0.00 0.00 2.43
6641 10582 3.899726 TCTACTCTAACCACCTGCCTAG 58.100 50.000 0.00 0.00 0.00 3.02
6642 10583 4.537945 ATCTACTCTAACCACCTGCCTA 57.462 45.455 0.00 0.00 0.00 3.93
6643 10584 2.921834 TCTACTCTAACCACCTGCCT 57.078 50.000 0.00 0.00 0.00 4.75
6644 10585 4.833380 TCATATCTACTCTAACCACCTGCC 59.167 45.833 0.00 0.00 0.00 4.85
6645 10586 6.435904 AGATCATATCTACTCTAACCACCTGC 59.564 42.308 0.00 0.00 38.00 4.85
6646 10587 7.667635 TGAGATCATATCTACTCTAACCACCTG 59.332 40.741 0.00 0.00 40.38 4.00
6647 10588 7.760607 TGAGATCATATCTACTCTAACCACCT 58.239 38.462 0.00 0.00 40.38 4.00
6648 10589 8.588290 ATGAGATCATATCTACTCTAACCACC 57.412 38.462 0.00 0.00 40.38 4.61
6649 10590 9.461312 AGATGAGATCATATCTACTCTAACCAC 57.539 37.037 9.28 0.00 40.38 4.16
6650 10591 9.679661 GAGATGAGATCATATCTACTCTAACCA 57.320 37.037 9.63 0.00 40.40 3.67
6651 10592 9.679661 TGAGATGAGATCATATCTACTCTAACC 57.320 37.037 16.10 0.01 43.08 2.85
6660 10601 9.871175 AGCTATACATGAGATGAGATCATATCT 57.129 33.333 16.10 10.46 43.08 1.98
6663 10604 8.693625 CCAAGCTATACATGAGATGAGATCATA 58.306 37.037 0.00 0.00 35.64 2.15
6664 10605 7.399478 TCCAAGCTATACATGAGATGAGATCAT 59.601 37.037 0.00 0.00 37.90 2.45
6665 10606 6.723052 TCCAAGCTATACATGAGATGAGATCA 59.277 38.462 0.00 0.00 0.00 2.92
6666 10607 7.093814 ACTCCAAGCTATACATGAGATGAGATC 60.094 40.741 0.00 0.00 0.00 2.75
6667 10608 6.725369 ACTCCAAGCTATACATGAGATGAGAT 59.275 38.462 0.00 0.00 0.00 2.75
6668 10609 6.073981 ACTCCAAGCTATACATGAGATGAGA 58.926 40.000 0.00 0.00 0.00 3.27
6669 10610 6.343716 ACTCCAAGCTATACATGAGATGAG 57.656 41.667 0.00 0.00 0.00 2.90
6670 10611 7.093596 CCATACTCCAAGCTATACATGAGATGA 60.094 40.741 0.00 0.00 0.00 2.92
6671 10612 7.040494 CCATACTCCAAGCTATACATGAGATG 58.960 42.308 0.00 0.00 0.00 2.90
6672 10613 6.155910 CCCATACTCCAAGCTATACATGAGAT 59.844 42.308 0.00 0.00 0.00 2.75
6673 10614 5.481824 CCCATACTCCAAGCTATACATGAGA 59.518 44.000 0.00 0.00 0.00 3.27
6674 10615 5.247110 ACCCATACTCCAAGCTATACATGAG 59.753 44.000 0.00 0.00 0.00 2.90
6675 10616 5.155161 ACCCATACTCCAAGCTATACATGA 58.845 41.667 0.00 0.00 0.00 3.07
6676 10617 5.012046 TGACCCATACTCCAAGCTATACATG 59.988 44.000 0.00 0.00 0.00 3.21
6677 10618 5.155161 TGACCCATACTCCAAGCTATACAT 58.845 41.667 0.00 0.00 0.00 2.29
6678 10619 4.552674 TGACCCATACTCCAAGCTATACA 58.447 43.478 0.00 0.00 0.00 2.29
6679 10620 5.304614 TCTTGACCCATACTCCAAGCTATAC 59.695 44.000 0.00 0.00 36.77 1.47
6680 10621 5.304614 GTCTTGACCCATACTCCAAGCTATA 59.695 44.000 0.00 0.00 36.77 1.31
6681 10622 4.101741 GTCTTGACCCATACTCCAAGCTAT 59.898 45.833 0.00 0.00 36.77 2.97
6682 10623 3.451178 GTCTTGACCCATACTCCAAGCTA 59.549 47.826 0.00 0.00 36.77 3.32
6683 10624 2.237392 GTCTTGACCCATACTCCAAGCT 59.763 50.000 0.00 0.00 36.77 3.74
6684 10625 2.237392 AGTCTTGACCCATACTCCAAGC 59.763 50.000 0.00 0.00 36.77 4.01
6685 10626 4.141914 GGTAGTCTTGACCCATACTCCAAG 60.142 50.000 0.00 0.00 37.82 3.61
6686 10627 3.773119 GGTAGTCTTGACCCATACTCCAA 59.227 47.826 0.00 0.00 0.00 3.53
6687 10628 3.245839 TGGTAGTCTTGACCCATACTCCA 60.246 47.826 0.00 0.00 35.99 3.86
6688 10629 3.371965 TGGTAGTCTTGACCCATACTCC 58.628 50.000 0.00 0.00 35.99 3.85
6689 10630 4.466726 AGTTGGTAGTCTTGACCCATACTC 59.533 45.833 0.00 0.00 35.99 2.59
6690 10631 4.426704 AGTTGGTAGTCTTGACCCATACT 58.573 43.478 0.00 3.70 35.99 2.12
6691 10632 4.820894 AGTTGGTAGTCTTGACCCATAC 57.179 45.455 0.00 1.89 35.99 2.39
6692 10633 6.323996 CAGATAGTTGGTAGTCTTGACCCATA 59.676 42.308 0.00 0.00 35.99 2.74
6693 10634 5.129485 CAGATAGTTGGTAGTCTTGACCCAT 59.871 44.000 0.00 0.00 35.99 4.00
6694 10635 4.466370 CAGATAGTTGGTAGTCTTGACCCA 59.534 45.833 0.00 0.00 35.99 4.51
6695 10636 4.680975 GCAGATAGTTGGTAGTCTTGACCC 60.681 50.000 0.00 0.00 35.99 4.46
6696 10637 4.434520 GCAGATAGTTGGTAGTCTTGACC 58.565 47.826 0.00 0.00 37.49 4.02
6697 10638 4.434520 GGCAGATAGTTGGTAGTCTTGAC 58.565 47.826 0.00 0.00 0.00 3.18
6698 10639 3.130516 CGGCAGATAGTTGGTAGTCTTGA 59.869 47.826 0.00 0.00 0.00 3.02
6699 10640 3.130516 TCGGCAGATAGTTGGTAGTCTTG 59.869 47.826 0.00 0.00 0.00 3.02
6700 10641 3.362706 TCGGCAGATAGTTGGTAGTCTT 58.637 45.455 0.00 0.00 0.00 3.01
6701 10642 3.014304 TCGGCAGATAGTTGGTAGTCT 57.986 47.619 0.00 0.00 0.00 3.24
6702 10643 3.305471 GGATCGGCAGATAGTTGGTAGTC 60.305 52.174 0.00 0.00 37.19 2.59
6703 10644 2.628657 GGATCGGCAGATAGTTGGTAGT 59.371 50.000 0.00 0.00 37.19 2.73
6704 10645 2.894126 AGGATCGGCAGATAGTTGGTAG 59.106 50.000 0.00 0.00 37.19 3.18
6705 10646 2.958818 AGGATCGGCAGATAGTTGGTA 58.041 47.619 0.00 0.00 37.19 3.25
6706 10647 1.794714 AGGATCGGCAGATAGTTGGT 58.205 50.000 0.00 0.00 37.19 3.67
6707 10648 2.158900 ACAAGGATCGGCAGATAGTTGG 60.159 50.000 18.58 5.12 37.19 3.77
6708 10649 3.185246 ACAAGGATCGGCAGATAGTTG 57.815 47.619 14.99 14.99 37.19 3.16
6709 10650 3.961408 AGTACAAGGATCGGCAGATAGTT 59.039 43.478 0.00 0.00 37.19 2.24
6710 10651 3.567397 AGTACAAGGATCGGCAGATAGT 58.433 45.455 0.00 0.00 37.19 2.12
6711 10652 4.202161 ACAAGTACAAGGATCGGCAGATAG 60.202 45.833 0.00 0.00 37.19 2.08
6712 10653 3.704566 ACAAGTACAAGGATCGGCAGATA 59.295 43.478 0.00 0.00 37.19 1.98
6713 10654 2.501723 ACAAGTACAAGGATCGGCAGAT 59.498 45.455 0.00 0.00 40.38 2.90
6714 10655 1.899814 ACAAGTACAAGGATCGGCAGA 59.100 47.619 0.00 0.00 0.00 4.26
6715 10656 2.386661 ACAAGTACAAGGATCGGCAG 57.613 50.000 0.00 0.00 0.00 4.85
6716 10657 2.037902 TCAACAAGTACAAGGATCGGCA 59.962 45.455 0.00 0.00 0.00 5.69
6717 10658 2.673368 CTCAACAAGTACAAGGATCGGC 59.327 50.000 0.00 0.00 0.00 5.54
6718 10659 2.673368 GCTCAACAAGTACAAGGATCGG 59.327 50.000 0.00 0.00 0.00 4.18
6719 10660 3.589988 AGCTCAACAAGTACAAGGATCG 58.410 45.455 0.00 0.00 0.00 3.69
6720 10661 9.982651 TTATATAGCTCAACAAGTACAAGGATC 57.017 33.333 0.00 0.00 0.00 3.36
6721 10662 9.765795 GTTATATAGCTCAACAAGTACAAGGAT 57.234 33.333 0.00 0.00 0.00 3.24
6722 10663 8.755028 TGTTATATAGCTCAACAAGTACAAGGA 58.245 33.333 0.00 0.00 0.00 3.36
6723 10664 8.818057 GTGTTATATAGCTCAACAAGTACAAGG 58.182 37.037 0.00 0.00 34.20 3.61
6724 10665 9.366216 TGTGTTATATAGCTCAACAAGTACAAG 57.634 33.333 0.00 0.00 34.20 3.16
6725 10666 9.146984 GTGTGTTATATAGCTCAACAAGTACAA 57.853 33.333 0.00 0.00 34.20 2.41
6726 10667 8.308207 TGTGTGTTATATAGCTCAACAAGTACA 58.692 33.333 0.00 1.71 34.20 2.90
6727 10668 8.697846 TGTGTGTTATATAGCTCAACAAGTAC 57.302 34.615 0.00 0.00 34.20 2.73
6728 10669 9.313118 CATGTGTGTTATATAGCTCAACAAGTA 57.687 33.333 0.00 0.00 34.20 2.24
6729 10670 7.824289 ACATGTGTGTTATATAGCTCAACAAGT 59.176 33.333 0.00 3.54 34.01 3.16
6730 10671 8.118607 CACATGTGTGTTATATAGCTCAACAAG 58.881 37.037 18.03 3.05 40.96 3.16
6731 10672 7.973601 CACATGTGTGTTATATAGCTCAACAA 58.026 34.615 18.03 0.00 40.96 2.83
6732 10673 7.538303 CACATGTGTGTTATATAGCTCAACA 57.462 36.000 18.03 0.00 40.96 3.33
6747 10688 3.595517 TCCTGCAGGGACACATGTGTG 62.596 57.143 35.10 21.20 45.05 3.82
6749 10690 1.376086 TCCTGCAGGGACACATGTG 59.624 57.895 32.23 24.25 39.58 3.21
6750 10691 3.905454 TCCTGCAGGGACACATGT 58.095 55.556 32.23 0.00 39.58 3.21
6763 10704 2.295349 GGTGGAAGCATATGCAATCCTG 59.705 50.000 34.07 3.24 44.54 3.86
6764 10705 2.091720 TGGTGGAAGCATATGCAATCCT 60.092 45.455 34.07 14.97 44.54 3.24
6765 10706 2.309613 TGGTGGAAGCATATGCAATCC 58.690 47.619 30.95 30.95 40.88 3.01
6776 10717 5.132897 TGTAAAATTGTGATGGTGGAAGC 57.867 39.130 0.00 0.00 0.00 3.86
6777 10718 6.101332 CCATGTAAAATTGTGATGGTGGAAG 58.899 40.000 0.00 0.00 30.74 3.46
6778 10719 5.541868 ACCATGTAAAATTGTGATGGTGGAA 59.458 36.000 11.58 0.00 44.12 3.53
6779 10720 5.083122 ACCATGTAAAATTGTGATGGTGGA 58.917 37.500 11.58 0.00 44.12 4.02
6780 10721 5.404466 ACCATGTAAAATTGTGATGGTGG 57.596 39.130 11.58 3.23 44.12 4.61
6781 10722 6.811170 GGTTACCATGTAAAATTGTGATGGTG 59.189 38.462 18.28 0.00 45.13 4.17
6782 10723 6.495181 TGGTTACCATGTAAAATTGTGATGGT 59.505 34.615 15.16 15.16 46.72 3.55
6783 10724 6.929625 TGGTTACCATGTAAAATTGTGATGG 58.070 36.000 0.00 6.86 39.66 3.51
6784 10725 7.825681 TCTGGTTACCATGTAAAATTGTGATG 58.174 34.615 3.88 0.00 30.82 3.07
6785 10726 7.362920 GCTCTGGTTACCATGTAAAATTGTGAT 60.363 37.037 3.88 0.00 30.82 3.06
6786 10727 6.072175 GCTCTGGTTACCATGTAAAATTGTGA 60.072 38.462 3.88 0.00 30.82 3.58
6787 10728 6.092748 GCTCTGGTTACCATGTAAAATTGTG 58.907 40.000 3.88 0.00 30.82 3.33
6788 10729 5.185056 GGCTCTGGTTACCATGTAAAATTGT 59.815 40.000 3.88 0.00 30.82 2.71
6789 10730 5.184864 TGGCTCTGGTTACCATGTAAAATTG 59.815 40.000 3.88 0.00 30.82 2.32
6790 10731 5.329399 TGGCTCTGGTTACCATGTAAAATT 58.671 37.500 3.88 0.00 30.82 1.82
6791 10732 4.929479 TGGCTCTGGTTACCATGTAAAAT 58.071 39.130 3.88 0.00 30.82 1.82
6792 10733 4.374689 TGGCTCTGGTTACCATGTAAAA 57.625 40.909 3.88 0.00 30.82 1.52
6793 10734 4.523083 GATGGCTCTGGTTACCATGTAAA 58.477 43.478 3.88 0.00 44.20 2.01
6794 10735 3.118038 GGATGGCTCTGGTTACCATGTAA 60.118 47.826 3.88 0.00 44.20 2.41
6795 10736 2.438021 GGATGGCTCTGGTTACCATGTA 59.562 50.000 3.88 0.00 44.20 2.29
6796 10737 1.212935 GGATGGCTCTGGTTACCATGT 59.787 52.381 3.88 0.00 44.20 3.21
6797 10738 1.492176 AGGATGGCTCTGGTTACCATG 59.508 52.381 3.88 2.21 44.20 3.66
6798 10739 1.771255 GAGGATGGCTCTGGTTACCAT 59.229 52.381 3.88 0.00 46.82 3.55
6799 10740 1.204146 GAGGATGGCTCTGGTTACCA 58.796 55.000 3.29 3.29 37.99 3.25
6800 10741 0.105039 CGAGGATGGCTCTGGTTACC 59.895 60.000 0.00 0.00 0.00 2.85
6801 10742 1.067821 CTCGAGGATGGCTCTGGTTAC 59.932 57.143 3.91 0.00 0.00 2.50
6802 10743 1.403814 CTCGAGGATGGCTCTGGTTA 58.596 55.000 3.91 0.00 0.00 2.85
6803 10744 1.965754 GCTCGAGGATGGCTCTGGTT 61.966 60.000 15.58 0.00 0.00 3.67
6804 10745 2.430610 GCTCGAGGATGGCTCTGGT 61.431 63.158 15.58 0.00 0.00 4.00
6805 10746 2.420890 GCTCGAGGATGGCTCTGG 59.579 66.667 15.58 0.00 0.00 3.86
6806 10747 1.227205 GTGCTCGAGGATGGCTCTG 60.227 63.158 15.58 0.00 0.00 3.35
6807 10748 1.047596 ATGTGCTCGAGGATGGCTCT 61.048 55.000 15.58 0.00 0.00 4.09
6808 10749 0.599728 GATGTGCTCGAGGATGGCTC 60.600 60.000 15.58 1.52 0.00 4.70
6809 10750 1.445095 GATGTGCTCGAGGATGGCT 59.555 57.895 15.58 0.00 0.00 4.75
6810 10751 1.596477 GGATGTGCTCGAGGATGGC 60.596 63.158 15.58 0.00 0.00 4.40
6811 10752 0.395686 ATGGATGTGCTCGAGGATGG 59.604 55.000 15.58 0.00 0.00 3.51
6812 10753 1.509703 CATGGATGTGCTCGAGGATG 58.490 55.000 15.58 1.16 0.00 3.51
6813 10754 0.395686 CCATGGATGTGCTCGAGGAT 59.604 55.000 15.58 0.00 0.00 3.24
6814 10755 1.825341 CCATGGATGTGCTCGAGGA 59.175 57.895 15.58 9.02 0.00 3.71
6815 10756 1.890979 GCCATGGATGTGCTCGAGG 60.891 63.158 18.40 0.00 0.00 4.63
6816 10757 2.242572 CGCCATGGATGTGCTCGAG 61.243 63.158 18.40 8.45 0.00 4.04
6817 10758 2.202919 CGCCATGGATGTGCTCGA 60.203 61.111 18.40 0.00 0.00 4.04
6818 10759 2.512286 ACGCCATGGATGTGCTCG 60.512 61.111 18.40 10.18 0.00 5.03
6819 10760 0.745845 AAGACGCCATGGATGTGCTC 60.746 55.000 18.40 1.31 0.00 4.26
6820 10761 0.745845 GAAGACGCCATGGATGTGCT 60.746 55.000 18.40 9.37 0.00 4.40
6821 10762 1.026182 TGAAGACGCCATGGATGTGC 61.026 55.000 18.40 0.00 0.00 4.57
6822 10763 1.399440 CTTGAAGACGCCATGGATGTG 59.601 52.381 18.40 3.89 0.00 3.21
6823 10764 1.003580 ACTTGAAGACGCCATGGATGT 59.996 47.619 18.40 13.35 0.00 3.06
6824 10765 1.742761 ACTTGAAGACGCCATGGATG 58.257 50.000 18.40 9.63 0.00 3.51
6825 10766 2.359900 GAACTTGAAGACGCCATGGAT 58.640 47.619 18.40 1.25 0.00 3.41
6826 10767 1.610624 GGAACTTGAAGACGCCATGGA 60.611 52.381 18.40 0.00 0.00 3.41
6827 10768 0.804989 GGAACTTGAAGACGCCATGG 59.195 55.000 7.63 7.63 0.00 3.66
6828 10769 1.813513 AGGAACTTGAAGACGCCATG 58.186 50.000 0.00 0.00 27.25 3.66
6842 10783 1.153147 GGCGAGGATGGGAAGGAAC 60.153 63.158 0.00 0.00 0.00 3.62
6843 10784 0.988145 ATGGCGAGGATGGGAAGGAA 60.988 55.000 0.00 0.00 0.00 3.36
6844 10785 0.988145 AATGGCGAGGATGGGAAGGA 60.988 55.000 0.00 0.00 0.00 3.36
6845 10786 0.536006 GAATGGCGAGGATGGGAAGG 60.536 60.000 0.00 0.00 0.00 3.46
6846 10787 0.882042 CGAATGGCGAGGATGGGAAG 60.882 60.000 0.00 0.00 44.57 3.46
6847 10788 1.146041 CGAATGGCGAGGATGGGAA 59.854 57.895 0.00 0.00 44.57 3.97
6848 10789 2.821685 CGAATGGCGAGGATGGGA 59.178 61.111 0.00 0.00 44.57 4.37
6849 10790 2.974698 GCGAATGGCGAGGATGGG 60.975 66.667 0.00 0.00 44.57 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.