Multiple sequence alignment - TraesCS2D01G224900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G224900 chr2D 100.000 3973 0 0 592 4564 192316954 192312982 0.000000e+00 7337.0
1 TraesCS2D01G224900 chr2D 100.000 241 0 0 1 241 192317545 192317305 3.240000e-121 446.0
2 TraesCS2D01G224900 chr2D 100.000 30 0 0 4067 4096 423293387 423293416 6.380000e-04 56.5
3 TraesCS2D01G224900 chr2D 100.000 28 0 0 2785 2812 192314734 192314761 8.000000e-03 52.8
4 TraesCS2D01G224900 chr2B 92.560 2043 62 30 703 2729 248095545 248097513 0.000000e+00 2848.0
5 TraesCS2D01G224900 chr2B 89.891 1197 84 18 3365 4557 248098324 248099487 0.000000e+00 1506.0
6 TraesCS2D01G224900 chr2B 82.574 373 32 16 2982 3331 248097763 248098125 9.600000e-77 298.0
7 TraesCS2D01G224900 chr2B 97.531 81 2 0 599 679 248095332 248095412 6.160000e-29 139.0
8 TraesCS2D01G224900 chr2A 88.900 1982 79 44 811 2729 205487387 205489290 0.000000e+00 2311.0
9 TraesCS2D01G224900 chr2A 92.761 1561 75 23 2807 4352 205489391 205490928 0.000000e+00 2222.0
10 TraesCS2D01G224900 chr2A 88.235 187 3 6 4378 4564 205490925 205491092 5.990000e-49 206.0
11 TraesCS2D01G224900 chr2A 95.402 87 4 0 692 778 205487305 205487391 6.160000e-29 139.0
12 TraesCS2D01G224900 chr2A 100.000 31 0 0 4064 4094 379154346 379154316 1.770000e-04 58.4
13 TraesCS2D01G224900 chr3D 97.095 241 7 0 1 241 122445614 122445854 1.530000e-109 407.0
14 TraesCS2D01G224900 chr3D 100.000 29 0 0 4067 4095 538406580 538406552 2.000000e-03 54.7
15 TraesCS2D01G224900 chr3B 88.382 241 11 1 1 241 148908313 148908090 1.620000e-69 274.0
16 TraesCS2D01G224900 chr4B 89.630 135 14 0 107 241 430302993 430303127 6.070000e-39 172.0
17 TraesCS2D01G224900 chr7B 100.000 29 0 0 3088 3116 89678998 89679026 2.000000e-03 54.7
18 TraesCS2D01G224900 chr7A 100.000 29 0 0 4067 4095 172324038 172324010 2.000000e-03 54.7
19 TraesCS2D01G224900 chr7A 86.538 52 4 3 2751 2802 581943569 581943617 2.000000e-03 54.7
20 TraesCS2D01G224900 chr4D 100.000 29 0 0 2755 2783 91073762 91073734 2.000000e-03 54.7
21 TraesCS2D01G224900 chr3A 100.000 29 0 0 4067 4095 673906308 673906280 2.000000e-03 54.7
22 TraesCS2D01G224900 chr7D 100.000 28 0 0 4067 4094 18888903 18888876 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G224900 chr2D 192312982 192317545 4563 True 3891.50 7337 100.0000 1 4564 2 chr2D.!!$R1 4563
1 TraesCS2D01G224900 chr2B 248095332 248099487 4155 False 1197.75 2848 90.6390 599 4557 4 chr2B.!!$F1 3958
2 TraesCS2D01G224900 chr2A 205487305 205491092 3787 False 1219.50 2311 91.3245 692 4564 4 chr2A.!!$F1 3872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 141 0.108186 TGGCGCTTGATACAGTCCTG 60.108 55.000 7.64 0.0 0.00 3.86 F
189 190 0.254747 TGTTGGTATGGGCTACAGGC 59.745 55.000 0.00 0.0 40.90 4.85 F
190 191 0.814010 GTTGGTATGGGCTACAGGCG 60.814 60.000 0.00 0.0 42.94 5.52 F
1235 1348 1.540580 GCCGGTAGATAGGTTCTTGCC 60.541 57.143 1.90 0.0 35.79 4.52 F
2191 2351 0.106217 AGGCTCCTCTCCTCTGTAGC 60.106 60.000 0.00 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 1862 1.525619 GTTAACGTCAGTGTCACTGGC 59.474 52.381 28.47 26.69 46.75 4.85 R
1768 1892 1.787155 CGTCGTCAGAACTCCAAAGTG 59.213 52.381 0.00 0.00 35.36 3.16 R
1894 2048 2.109126 GTGCCCGTTCAGCATCTCC 61.109 63.158 0.00 0.00 43.29 3.71 R
2955 3176 0.179020 CGGCTCCAGGGCATTGATTA 60.179 55.000 0.00 0.00 40.90 1.75 R
4186 4601 0.179171 CAGCAGCGAGGCAAAATCAG 60.179 55.000 1.57 0.00 35.83 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.735478 CGCCGTCGTGCCAAACTA 60.735 61.111 0.00 0.00 0.00 2.24
40 41 2.311701 CGCCGTCGTGCCAAACTAA 61.312 57.895 0.00 0.00 0.00 2.24
41 42 1.495951 GCCGTCGTGCCAAACTAAG 59.504 57.895 0.00 0.00 0.00 2.18
42 43 0.947180 GCCGTCGTGCCAAACTAAGA 60.947 55.000 0.00 0.00 0.00 2.10
43 44 1.068474 CCGTCGTGCCAAACTAAGAG 58.932 55.000 0.00 0.00 0.00 2.85
44 45 0.438830 CGTCGTGCCAAACTAAGAGC 59.561 55.000 0.00 0.00 0.00 4.09
45 46 1.508632 GTCGTGCCAAACTAAGAGCA 58.491 50.000 0.00 0.00 0.00 4.26
49 50 1.896220 TGCCAAACTAAGAGCACAGG 58.104 50.000 0.00 0.00 0.00 4.00
50 51 1.168714 GCCAAACTAAGAGCACAGGG 58.831 55.000 0.00 0.00 0.00 4.45
51 52 1.826385 CCAAACTAAGAGCACAGGGG 58.174 55.000 0.00 0.00 0.00 4.79
52 53 1.168714 CAAACTAAGAGCACAGGGGC 58.831 55.000 0.00 0.00 0.00 5.80
53 54 0.771127 AAACTAAGAGCACAGGGGCA 59.229 50.000 0.00 0.00 35.83 5.36
54 55 0.995024 AACTAAGAGCACAGGGGCAT 59.005 50.000 0.00 0.00 35.83 4.40
55 56 0.254178 ACTAAGAGCACAGGGGCATG 59.746 55.000 0.00 0.00 35.83 4.06
56 57 0.465097 CTAAGAGCACAGGGGCATGG 60.465 60.000 0.00 0.00 35.83 3.66
57 58 2.556840 TAAGAGCACAGGGGCATGGC 62.557 60.000 11.56 11.56 35.83 4.40
67 68 4.778143 GGCATGGCCGTTCGTCCT 62.778 66.667 8.35 0.00 39.62 3.85
68 69 2.185867 GCATGGCCGTTCGTCCTA 59.814 61.111 0.00 0.00 0.00 2.94
69 70 1.883084 GCATGGCCGTTCGTCCTAG 60.883 63.158 0.00 0.00 0.00 3.02
70 71 1.227263 CATGGCCGTTCGTCCTAGG 60.227 63.158 0.82 0.82 0.00 3.02
71 72 2.432300 ATGGCCGTTCGTCCTAGGG 61.432 63.158 9.46 0.00 0.00 3.53
72 73 3.073101 GGCCGTTCGTCCTAGGGT 61.073 66.667 9.46 0.00 0.00 4.34
73 74 2.653087 GGCCGTTCGTCCTAGGGTT 61.653 63.158 9.46 0.00 0.00 4.11
74 75 1.153686 GCCGTTCGTCCTAGGGTTC 60.154 63.158 9.46 0.00 0.00 3.62
75 76 1.514553 CCGTTCGTCCTAGGGTTCC 59.485 63.158 9.46 0.00 0.00 3.62
76 77 1.252904 CCGTTCGTCCTAGGGTTCCA 61.253 60.000 9.46 0.00 0.00 3.53
77 78 0.108945 CGTTCGTCCTAGGGTTCCAC 60.109 60.000 9.46 0.00 0.00 4.02
78 79 0.108945 GTTCGTCCTAGGGTTCCACG 60.109 60.000 9.46 11.26 0.00 4.94
79 80 1.880819 TTCGTCCTAGGGTTCCACGC 61.881 60.000 9.46 0.00 0.00 5.34
80 81 2.582978 GTCCTAGGGTTCCACGCC 59.417 66.667 9.46 0.00 0.00 5.68
81 82 3.072468 TCCTAGGGTTCCACGCCG 61.072 66.667 9.46 0.00 0.00 6.46
82 83 4.832608 CCTAGGGTTCCACGCCGC 62.833 72.222 0.00 0.00 0.00 6.53
83 84 4.832608 CTAGGGTTCCACGCCGCC 62.833 72.222 0.00 0.00 0.00 6.13
96 97 3.602677 CCGCCGCGGGAGAGATAA 61.603 66.667 29.38 0.00 44.15 1.75
97 98 2.415843 CGCCGCGGGAGAGATAAA 59.584 61.111 29.38 0.00 0.00 1.40
98 99 1.006102 CGCCGCGGGAGAGATAAAT 60.006 57.895 29.38 0.00 0.00 1.40
99 100 0.242825 CGCCGCGGGAGAGATAAATA 59.757 55.000 29.38 0.00 0.00 1.40
100 101 1.711206 GCCGCGGGAGAGATAAATAC 58.289 55.000 29.38 0.17 0.00 1.89
101 102 1.672145 GCCGCGGGAGAGATAAATACC 60.672 57.143 29.38 0.00 0.00 2.73
102 103 1.402456 CCGCGGGAGAGATAAATACCG 60.402 57.143 20.10 0.00 43.81 4.02
103 104 1.538512 CGCGGGAGAGATAAATACCGA 59.461 52.381 0.00 0.00 43.69 4.69
104 105 2.163815 CGCGGGAGAGATAAATACCGAT 59.836 50.000 0.00 0.00 43.69 4.18
105 106 3.731264 CGCGGGAGAGATAAATACCGATC 60.731 52.174 0.00 0.00 43.69 3.69
106 107 3.731264 GCGGGAGAGATAAATACCGATCG 60.731 52.174 8.51 8.51 43.69 3.69
107 108 3.688185 CGGGAGAGATAAATACCGATCGA 59.312 47.826 18.66 0.00 43.69 3.59
108 109 4.201832 CGGGAGAGATAAATACCGATCGAG 60.202 50.000 18.66 9.42 43.69 4.04
109 110 4.942483 GGGAGAGATAAATACCGATCGAGA 59.058 45.833 18.66 3.74 0.00 4.04
110 111 5.065474 GGGAGAGATAAATACCGATCGAGAG 59.935 48.000 18.66 1.96 0.00 3.20
111 112 5.644636 GGAGAGATAAATACCGATCGAGAGT 59.355 44.000 18.66 8.79 0.00 3.24
112 113 6.817641 GGAGAGATAAATACCGATCGAGAGTA 59.182 42.308 18.66 10.91 0.00 2.59
113 114 7.010738 GGAGAGATAAATACCGATCGAGAGTAG 59.989 44.444 18.66 0.27 0.00 2.57
114 115 7.388437 AGAGATAAATACCGATCGAGAGTAGT 58.612 38.462 18.66 6.92 0.00 2.73
115 116 7.879160 AGAGATAAATACCGATCGAGAGTAGTT 59.121 37.037 18.66 16.98 0.00 2.24
116 117 8.393671 AGATAAATACCGATCGAGAGTAGTTT 57.606 34.615 18.66 13.46 0.00 2.66
117 118 9.499479 AGATAAATACCGATCGAGAGTAGTTTA 57.501 33.333 18.66 14.82 0.00 2.01
123 124 6.910995 ACCGATCGAGAGTAGTTTATTATGG 58.089 40.000 18.66 0.00 0.00 2.74
124 125 5.800941 CCGATCGAGAGTAGTTTATTATGGC 59.199 44.000 18.66 0.00 0.00 4.40
125 126 5.508573 CGATCGAGAGTAGTTTATTATGGCG 59.491 44.000 10.26 0.00 0.00 5.69
126 127 4.543692 TCGAGAGTAGTTTATTATGGCGC 58.456 43.478 0.00 0.00 0.00 6.53
127 128 4.277672 TCGAGAGTAGTTTATTATGGCGCT 59.722 41.667 7.64 0.00 0.00 5.92
128 129 4.982916 CGAGAGTAGTTTATTATGGCGCTT 59.017 41.667 7.64 0.00 0.00 4.68
129 130 5.107837 CGAGAGTAGTTTATTATGGCGCTTG 60.108 44.000 7.64 0.00 0.00 4.01
130 131 5.914033 AGAGTAGTTTATTATGGCGCTTGA 58.086 37.500 7.64 0.00 0.00 3.02
131 132 6.525629 AGAGTAGTTTATTATGGCGCTTGAT 58.474 36.000 7.64 0.06 0.00 2.57
132 133 7.667557 AGAGTAGTTTATTATGGCGCTTGATA 58.332 34.615 7.64 0.00 0.00 2.15
133 134 7.599245 AGAGTAGTTTATTATGGCGCTTGATAC 59.401 37.037 7.64 0.00 0.00 2.24
134 135 7.214381 AGTAGTTTATTATGGCGCTTGATACA 58.786 34.615 7.64 0.00 0.00 2.29
135 136 6.545504 AGTTTATTATGGCGCTTGATACAG 57.454 37.500 7.64 0.00 0.00 2.74
136 137 6.055588 AGTTTATTATGGCGCTTGATACAGT 58.944 36.000 7.64 0.00 0.00 3.55
137 138 6.202954 AGTTTATTATGGCGCTTGATACAGTC 59.797 38.462 7.64 0.00 0.00 3.51
138 139 2.526304 TATGGCGCTTGATACAGTCC 57.474 50.000 7.64 0.00 0.00 3.85
139 140 0.833287 ATGGCGCTTGATACAGTCCT 59.167 50.000 7.64 0.00 0.00 3.85
140 141 0.108186 TGGCGCTTGATACAGTCCTG 60.108 55.000 7.64 0.00 0.00 3.86
141 142 1.432270 GGCGCTTGATACAGTCCTGC 61.432 60.000 7.64 0.00 0.00 4.85
142 143 1.756375 GCGCTTGATACAGTCCTGCG 61.756 60.000 0.00 0.00 44.61 5.18
143 144 0.458543 CGCTTGATACAGTCCTGCGT 60.459 55.000 0.00 0.00 40.33 5.24
144 145 1.281899 GCTTGATACAGTCCTGCGTC 58.718 55.000 0.00 0.00 0.00 5.19
145 146 1.927895 CTTGATACAGTCCTGCGTCC 58.072 55.000 0.00 0.00 0.00 4.79
146 147 1.204704 CTTGATACAGTCCTGCGTCCA 59.795 52.381 0.00 0.00 0.00 4.02
147 148 0.817654 TGATACAGTCCTGCGTCCAG 59.182 55.000 0.00 0.00 38.85 3.86
158 159 2.664916 CTGCGTCCAGGATTGTTTTTG 58.335 47.619 0.00 0.00 35.38 2.44
159 160 1.269517 TGCGTCCAGGATTGTTTTTGC 60.270 47.619 0.00 0.00 0.00 3.68
160 161 1.269517 GCGTCCAGGATTGTTTTTGCA 60.270 47.619 0.00 0.00 0.00 4.08
161 162 2.801342 GCGTCCAGGATTGTTTTTGCAA 60.801 45.455 0.00 0.00 0.00 4.08
162 163 3.452474 CGTCCAGGATTGTTTTTGCAAA 58.548 40.909 8.05 8.05 31.63 3.68
163 164 3.490526 CGTCCAGGATTGTTTTTGCAAAG 59.509 43.478 12.41 0.00 31.63 2.77
164 165 4.441792 GTCCAGGATTGTTTTTGCAAAGT 58.558 39.130 12.41 0.00 31.63 2.66
165 166 5.596845 GTCCAGGATTGTTTTTGCAAAGTA 58.403 37.500 12.41 1.94 31.63 2.24
166 167 6.045955 GTCCAGGATTGTTTTTGCAAAGTAA 58.954 36.000 12.41 9.26 31.63 2.24
167 168 6.536941 GTCCAGGATTGTTTTTGCAAAGTAAA 59.463 34.615 12.41 8.27 31.63 2.01
168 169 7.065204 GTCCAGGATTGTTTTTGCAAAGTAAAA 59.935 33.333 12.41 6.70 31.63 1.52
169 170 7.065204 TCCAGGATTGTTTTTGCAAAGTAAAAC 59.935 33.333 12.41 13.76 42.00 2.43
170 171 7.065683 CCAGGATTGTTTTTGCAAAGTAAAACT 59.934 33.333 19.74 12.49 42.10 2.66
171 172 7.904461 CAGGATTGTTTTTGCAAAGTAAAACTG 59.096 33.333 19.74 17.50 42.10 3.16
172 173 7.606073 AGGATTGTTTTTGCAAAGTAAAACTGT 59.394 29.630 19.74 11.51 42.10 3.55
173 174 8.233868 GGATTGTTTTTGCAAAGTAAAACTGTT 58.766 29.630 19.74 8.91 42.10 3.16
174 175 8.947304 ATTGTTTTTGCAAAGTAAAACTGTTG 57.053 26.923 19.74 0.33 42.10 3.33
175 176 6.892691 TGTTTTTGCAAAGTAAAACTGTTGG 58.107 32.000 19.74 0.00 42.10 3.77
176 177 6.483640 TGTTTTTGCAAAGTAAAACTGTTGGT 59.516 30.769 19.74 0.00 42.10 3.67
177 178 7.656137 TGTTTTTGCAAAGTAAAACTGTTGGTA 59.344 29.630 19.74 1.84 42.10 3.25
178 179 8.661257 GTTTTTGCAAAGTAAAACTGTTGGTAT 58.339 29.630 12.41 0.00 39.78 2.73
179 180 7.763172 TTTGCAAAGTAAAACTGTTGGTATG 57.237 32.000 8.05 0.00 0.00 2.39
180 181 5.837437 TGCAAAGTAAAACTGTTGGTATGG 58.163 37.500 0.00 0.00 0.00 2.74
181 182 5.221342 TGCAAAGTAAAACTGTTGGTATGGG 60.221 40.000 0.00 0.00 0.00 4.00
182 183 5.227152 CAAAGTAAAACTGTTGGTATGGGC 58.773 41.667 0.00 0.00 0.00 5.36
183 184 4.382386 AGTAAAACTGTTGGTATGGGCT 57.618 40.909 0.00 0.00 0.00 5.19
184 185 5.508280 AGTAAAACTGTTGGTATGGGCTA 57.492 39.130 0.00 0.00 0.00 3.93
185 186 5.250982 AGTAAAACTGTTGGTATGGGCTAC 58.749 41.667 0.00 0.00 0.00 3.58
186 187 3.799432 AAACTGTTGGTATGGGCTACA 57.201 42.857 0.00 0.00 31.44 2.74
187 188 3.350219 AACTGTTGGTATGGGCTACAG 57.650 47.619 0.00 0.00 41.42 2.74
188 189 1.559682 ACTGTTGGTATGGGCTACAGG 59.440 52.381 0.00 0.00 40.29 4.00
189 190 0.254747 TGTTGGTATGGGCTACAGGC 59.745 55.000 0.00 0.00 40.90 4.85
190 191 0.814010 GTTGGTATGGGCTACAGGCG 60.814 60.000 0.00 0.00 42.94 5.52
191 192 1.978455 TTGGTATGGGCTACAGGCGG 61.978 60.000 0.00 0.00 42.94 6.13
192 193 2.426023 GTATGGGCTACAGGCGGG 59.574 66.667 0.00 0.00 42.94 6.13
193 194 3.556306 TATGGGCTACAGGCGGGC 61.556 66.667 0.00 0.00 42.94 6.13
216 217 4.613925 TGCCAATGCAAAATAACTGGAA 57.386 36.364 0.00 0.00 46.66 3.53
217 218 4.965814 TGCCAATGCAAAATAACTGGAAA 58.034 34.783 0.00 0.00 46.66 3.13
218 219 5.558818 TGCCAATGCAAAATAACTGGAAAT 58.441 33.333 0.00 0.00 46.66 2.17
219 220 6.002704 TGCCAATGCAAAATAACTGGAAATT 58.997 32.000 0.00 0.00 46.66 1.82
220 221 7.164122 TGCCAATGCAAAATAACTGGAAATTA 58.836 30.769 0.00 0.00 46.66 1.40
221 222 7.663081 TGCCAATGCAAAATAACTGGAAATTAA 59.337 29.630 0.00 0.00 46.66 1.40
222 223 7.962373 GCCAATGCAAAATAACTGGAAATTAAC 59.038 33.333 0.00 0.00 37.47 2.01
223 224 8.450180 CCAATGCAAAATAACTGGAAATTAACC 58.550 33.333 0.00 0.00 0.00 2.85
224 225 8.997323 CAATGCAAAATAACTGGAAATTAACCA 58.003 29.630 0.00 4.58 35.96 3.67
225 226 9.566432 AATGCAAAATAACTGGAAATTAACCAA 57.434 25.926 0.00 0.00 36.95 3.67
226 227 8.964476 TGCAAAATAACTGGAAATTAACCAAA 57.036 26.923 5.91 0.00 36.95 3.28
227 228 9.396022 TGCAAAATAACTGGAAATTAACCAAAA 57.604 25.926 5.91 0.00 36.95 2.44
228 229 9.658475 GCAAAATAACTGGAAATTAACCAAAAC 57.342 29.630 5.91 0.00 36.95 2.43
230 231 9.907229 AAAATAACTGGAAATTAACCAAAACCA 57.093 25.926 5.91 0.00 36.95 3.67
231 232 9.907229 AAATAACTGGAAATTAACCAAAACCAA 57.093 25.926 5.91 0.00 36.95 3.67
232 233 9.907229 AATAACTGGAAATTAACCAAAACCAAA 57.093 25.926 5.91 0.00 36.95 3.28
233 234 7.857734 AACTGGAAATTAACCAAAACCAAAG 57.142 32.000 5.91 0.00 36.95 2.77
234 235 6.353323 ACTGGAAATTAACCAAAACCAAAGG 58.647 36.000 5.91 0.00 36.95 3.11
235 236 6.157123 ACTGGAAATTAACCAAAACCAAAGGA 59.843 34.615 5.91 0.00 36.95 3.36
236 237 7.142995 TGGAAATTAACCAAAACCAAAGGAT 57.857 32.000 2.37 0.00 34.25 3.24
237 238 7.578203 TGGAAATTAACCAAAACCAAAGGATT 58.422 30.769 2.37 0.00 34.25 3.01
238 239 7.717436 TGGAAATTAACCAAAACCAAAGGATTC 59.283 33.333 2.37 0.00 34.25 2.52
239 240 7.717436 GGAAATTAACCAAAACCAAAGGATTCA 59.283 33.333 0.00 0.00 0.00 2.57
240 241 8.675705 AAATTAACCAAAACCAAAGGATTCAG 57.324 30.769 0.00 0.00 0.00 3.02
781 891 5.724328 TGTACTGTGAACATCATCTTCTCC 58.276 41.667 0.00 0.00 0.00 3.71
890 1000 5.811399 TTTGTAGTATTCCGCCATTCAAG 57.189 39.130 0.00 0.00 0.00 3.02
929 1039 3.068873 GGGCTACCATAACTCACTCAGAG 59.931 52.174 0.00 0.00 42.86 3.35
955 1065 7.283329 ACAACAAAAGAGAAGACATACTCCTT 58.717 34.615 0.00 0.00 34.13 3.36
1235 1348 1.540580 GCCGGTAGATAGGTTCTTGCC 60.541 57.143 1.90 0.00 35.79 4.52
1272 1390 5.197451 TCTGTTCCTTTTTAGGTTCTTGCA 58.803 37.500 0.00 0.00 0.00 4.08
1425 1543 3.391049 GACACCTGTAAGTCTGTTGGAC 58.609 50.000 0.00 0.00 44.80 4.02
1473 1591 1.671328 GCGTCCAGATTTCTTTAGGCC 59.329 52.381 0.00 0.00 0.00 5.19
1474 1592 2.939640 GCGTCCAGATTTCTTTAGGCCA 60.940 50.000 5.01 0.00 0.00 5.36
1475 1593 3.545703 CGTCCAGATTTCTTTAGGCCAT 58.454 45.455 5.01 0.00 0.00 4.40
1480 1598 3.561725 CAGATTTCTTTAGGCCATCGTCC 59.438 47.826 5.01 0.00 0.00 4.79
1623 1741 3.404773 AGGTTAGCCTGCCCAGTC 58.595 61.111 0.00 0.00 45.05 3.51
1685 1804 7.421530 TTTTCTTCTCCTTGTATTTCACGAG 57.578 36.000 0.00 0.00 38.28 4.18
1709 1828 3.402628 ACGACTCAATTGCTACCTTGT 57.597 42.857 0.00 0.00 0.00 3.16
1711 1830 4.495422 ACGACTCAATTGCTACCTTGTAG 58.505 43.478 0.00 0.00 0.00 2.74
1712 1831 3.307242 CGACTCAATTGCTACCTTGTAGC 59.693 47.826 17.16 17.16 40.76 3.58
1724 1848 6.209986 TGCTACCTTGTAGCTTAAGTGACTAA 59.790 38.462 22.55 0.42 40.95 2.24
1725 1849 7.093465 TGCTACCTTGTAGCTTAAGTGACTAAT 60.093 37.037 22.55 0.00 40.95 1.73
1726 1850 7.222999 GCTACCTTGTAGCTTAAGTGACTAATG 59.777 40.741 16.82 1.48 37.56 1.90
1764 1888 2.159156 TGACACTGACGTTAACTGCACT 60.159 45.455 3.71 0.00 0.00 4.40
1765 1889 3.067040 TGACACTGACGTTAACTGCACTA 59.933 43.478 3.71 0.00 0.00 2.74
1766 1890 3.378339 ACACTGACGTTAACTGCACTAC 58.622 45.455 3.71 0.00 0.00 2.73
1767 1891 3.181484 ACACTGACGTTAACTGCACTACA 60.181 43.478 3.71 0.00 0.00 2.74
1768 1892 3.181774 CACTGACGTTAACTGCACTACAC 59.818 47.826 3.71 0.00 0.00 2.90
1966 2120 2.683933 GGAGGGAAGTCCAGGCGA 60.684 66.667 0.00 0.00 36.51 5.54
2043 2197 3.062774 GCCACGCTGTAAGAATCTTCTTC 59.937 47.826 8.40 2.77 43.72 2.87
2044 2198 3.619038 CCACGCTGTAAGAATCTTCTTCC 59.381 47.826 8.40 0.00 43.72 3.46
2045 2199 3.619038 CACGCTGTAAGAATCTTCTTCCC 59.381 47.826 8.40 2.70 43.72 3.97
2046 2200 3.198872 CGCTGTAAGAATCTTCTTCCCC 58.801 50.000 8.40 0.54 43.72 4.81
2047 2201 3.118592 CGCTGTAAGAATCTTCTTCCCCT 60.119 47.826 8.40 0.00 43.72 4.79
2048 2202 4.624125 CGCTGTAAGAATCTTCTTCCCCTT 60.624 45.833 8.40 0.00 43.72 3.95
2067 2221 1.862138 CCCCTTCCCCTTCCCCTTT 60.862 63.158 0.00 0.00 0.00 3.11
2069 2223 1.303282 CCTTCCCCTTCCCCTTTCG 59.697 63.158 0.00 0.00 0.00 3.46
2081 2235 5.477637 CCTTCCCCTTTCGTTGGTTTATTTA 59.522 40.000 0.00 0.00 0.00 1.40
2085 2239 7.964624 TCCCCTTTCGTTGGTTTATTTATTTT 58.035 30.769 0.00 0.00 0.00 1.82
2123 2277 3.628646 ATCACTGAACCAGCCGGCC 62.629 63.158 26.15 7.94 34.37 6.13
2135 2289 4.680237 CCGGCCGCAGAGTGTCAA 62.680 66.667 22.85 0.00 0.00 3.18
2136 2290 2.664851 CGGCCGCAGAGTGTCAAA 60.665 61.111 14.67 0.00 0.00 2.69
2137 2291 2.250939 CGGCCGCAGAGTGTCAAAA 61.251 57.895 14.67 0.00 0.00 2.44
2138 2292 1.282875 GGCCGCAGAGTGTCAAAAC 59.717 57.895 0.00 0.00 0.00 2.43
2139 2293 1.166531 GGCCGCAGAGTGTCAAAACT 61.167 55.000 0.00 0.00 0.00 2.66
2191 2351 0.106217 AGGCTCCTCTCCTCTGTAGC 60.106 60.000 0.00 0.00 0.00 3.58
2228 2388 6.208599 TCACTTGGTGAAATGAAACCTATTCC 59.791 38.462 0.00 0.00 39.78 3.01
2253 2416 1.338769 ACATGTTAGGCGACTTGGGTC 60.339 52.381 0.00 0.00 43.67 4.46
2265 2428 2.237143 GACTTGGGTCATGGATCAGTGA 59.763 50.000 0.00 0.00 41.75 3.41
2496 2680 4.085415 GCAATAGCAAATGCAACTAATCGC 60.085 41.667 8.28 0.00 45.16 4.58
2497 2681 5.276270 CAATAGCAAATGCAACTAATCGCT 58.724 37.500 8.28 0.00 45.16 4.93
2498 2682 3.411415 AGCAAATGCAACTAATCGCTC 57.589 42.857 8.28 0.00 45.16 5.03
2499 2683 3.012518 AGCAAATGCAACTAATCGCTCT 58.987 40.909 8.28 0.00 45.16 4.09
2500 2684 3.103738 GCAAATGCAACTAATCGCTCTG 58.896 45.455 0.00 0.00 41.59 3.35
2501 2685 3.181507 GCAAATGCAACTAATCGCTCTGA 60.182 43.478 0.00 0.00 41.59 3.27
2502 2686 4.337763 CAAATGCAACTAATCGCTCTGAC 58.662 43.478 0.00 0.00 0.00 3.51
2503 2687 1.629013 TGCAACTAATCGCTCTGACG 58.371 50.000 0.00 0.00 0.00 4.35
2504 2688 0.924090 GCAACTAATCGCTCTGACGG 59.076 55.000 0.00 0.00 0.00 4.79
2505 2689 1.560923 CAACTAATCGCTCTGACGGG 58.439 55.000 0.00 0.00 0.00 5.28
2506 2690 1.134367 CAACTAATCGCTCTGACGGGA 59.866 52.381 0.00 0.00 0.00 5.14
2507 2691 1.025812 ACTAATCGCTCTGACGGGAG 58.974 55.000 0.00 0.00 36.50 4.30
2571 2755 5.010617 GTGGGGTCATTATCGGCAATAATTT 59.989 40.000 1.86 0.00 38.28 1.82
2720 2904 1.898574 CACCTTCGCCTTTGCCACT 60.899 57.895 0.00 0.00 0.00 4.00
2743 2948 0.606401 ATCGACCAACAACCAGCCAG 60.606 55.000 0.00 0.00 0.00 4.85
2752 2957 3.849563 ACAACCAGCCAGTTTAGTACA 57.150 42.857 0.00 0.00 0.00 2.90
2754 2959 3.135895 ACAACCAGCCAGTTTAGTACACT 59.864 43.478 0.00 0.00 0.00 3.55
2755 2960 4.345837 ACAACCAGCCAGTTTAGTACACTA 59.654 41.667 0.00 0.00 0.00 2.74
2756 2961 4.532314 ACCAGCCAGTTTAGTACACTAC 57.468 45.455 0.00 0.00 0.00 2.73
2757 2962 4.158015 ACCAGCCAGTTTAGTACACTACT 58.842 43.478 0.00 0.00 42.68 2.57
2758 2963 5.327732 ACCAGCCAGTTTAGTACACTACTA 58.672 41.667 0.00 0.00 40.14 1.82
2759 2964 5.184671 ACCAGCCAGTTTAGTACACTACTAC 59.815 44.000 0.00 0.00 40.74 2.73
2760 2965 5.418209 CCAGCCAGTTTAGTACACTACTACT 59.582 44.000 0.00 0.00 40.74 2.57
2762 2967 7.376615 CAGCCAGTTTAGTACACTACTACTTT 58.623 38.462 0.00 0.00 40.74 2.66
2763 2968 7.541437 CAGCCAGTTTAGTACACTACTACTTTC 59.459 40.741 0.00 0.00 40.74 2.62
2765 2970 7.754475 GCCAGTTTAGTACACTACTACTTTCTC 59.246 40.741 0.00 0.00 40.74 2.87
2767 2972 9.828852 CAGTTTAGTACACTACTACTTTCTCTG 57.171 37.037 0.00 0.00 40.74 3.35
2772 2977 7.873910 AGTACACTACTACTTTCTCTGTTCAC 58.126 38.462 0.00 0.00 37.23 3.18
2773 2978 6.963083 ACACTACTACTTTCTCTGTTCACT 57.037 37.500 0.00 0.00 0.00 3.41
2774 2979 7.349412 ACACTACTACTTTCTCTGTTCACTT 57.651 36.000 0.00 0.00 0.00 3.16
2775 2980 7.783042 ACACTACTACTTTCTCTGTTCACTTT 58.217 34.615 0.00 0.00 0.00 2.66
2776 2981 8.258708 ACACTACTACTTTCTCTGTTCACTTTT 58.741 33.333 0.00 0.00 0.00 2.27
2784 2989 8.979574 ACTTTCTCTGTTCACTTTTATAAGTCG 58.020 33.333 0.00 0.00 42.67 4.18
2785 2990 8.882415 TTTCTCTGTTCACTTTTATAAGTCGT 57.118 30.769 0.00 0.00 42.67 4.34
2786 2991 8.882415 TTCTCTGTTCACTTTTATAAGTCGTT 57.118 30.769 0.00 0.00 42.67 3.85
2787 2992 8.882415 TCTCTGTTCACTTTTATAAGTCGTTT 57.118 30.769 0.00 0.00 42.67 3.60
2868 3089 2.192861 CAACCGCCAGAACAAGCCA 61.193 57.895 0.00 0.00 0.00 4.75
2871 3092 2.703798 CCGCCAGAACAAGCCATGG 61.704 63.158 7.63 7.63 35.84 3.66
2921 3142 0.523072 CCGGCTTGTCCTTGTTGATG 59.477 55.000 0.00 0.00 0.00 3.07
2955 3176 5.018809 AGTTTCTATGCATGTGTCCCAAAT 58.981 37.500 10.16 0.00 0.00 2.32
2960 3181 6.363882 TCTATGCATGTGTCCCAAATAATCA 58.636 36.000 10.16 0.00 0.00 2.57
2963 3184 5.662456 TGCATGTGTCCCAAATAATCAATG 58.338 37.500 0.00 0.00 0.00 2.82
3005 3226 8.960591 CATCACTGTTGAACCCTTTAATAGATT 58.039 33.333 0.00 0.00 34.61 2.40
3063 3288 2.119484 AATTCCAACCTCGACGCCCA 62.119 55.000 0.00 0.00 0.00 5.36
3078 3303 2.035632 CGCCCAAAGGAGACTAGAGAT 58.964 52.381 0.00 0.00 42.68 2.75
3084 3309 6.152154 GCCCAAAGGAGACTAGAGATATCTAC 59.848 46.154 4.89 0.00 42.68 2.59
3085 3310 7.235079 CCCAAAGGAGACTAGAGATATCTACA 58.765 42.308 4.89 0.00 42.68 2.74
3090 3315 7.676947 AGGAGACTAGAGATATCTACACTGTC 58.323 42.308 4.89 9.77 40.61 3.51
3217 3461 3.505386 GAGGCATCCAGATCCTAGAAGA 58.495 50.000 0.00 0.00 0.00 2.87
3234 3478 3.240134 GAGAGTGTTCGCCCCAGCA 62.240 63.158 0.00 0.00 39.83 4.41
3261 3505 2.376855 AGGAGAAGGGGAGAAAAGGTTG 59.623 50.000 0.00 0.00 0.00 3.77
3282 3526 4.093743 TGTGTTGATCTGGAGTAGCCTAA 58.906 43.478 0.00 0.00 37.63 2.69
3331 3575 5.925969 GGTTTTAATTCATCCACTTGTGGTG 59.074 40.000 18.05 15.01 44.96 4.17
3426 3836 6.152661 CAGGTCCTCTCCAGTGATAATATCTC 59.847 46.154 1.66 0.00 0.00 2.75
3447 3857 5.765182 TCTCAACTCCAACTGATTTTTCCTC 59.235 40.000 0.00 0.00 0.00 3.71
3450 3860 4.657013 ACTCCAACTGATTTTTCCTCCTC 58.343 43.478 0.00 0.00 0.00 3.71
3511 3921 4.764172 CTCTACTTCACCCTTTCCATGAG 58.236 47.826 0.00 0.00 0.00 2.90
3701 4111 3.165058 TCGTGTGGTGATATGAGAAGC 57.835 47.619 0.00 0.00 0.00 3.86
3705 4115 2.092968 TGTGGTGATATGAGAAGCCACC 60.093 50.000 8.75 0.00 43.96 4.61
3744 4154 2.046292 GGCAGAGAAGAGATTAGGCCT 58.954 52.381 11.78 11.78 37.22 5.19
3851 4265 6.446318 TGTTCTCATTGCACAAAAGAATACC 58.554 36.000 12.10 4.26 32.53 2.73
3861 4275 5.519722 CACAAAAGAATACCAGTCGCTTTT 58.480 37.500 0.00 0.00 38.80 2.27
3886 4300 2.495084 GCCGATGATAGGGTTTTCTCC 58.505 52.381 0.00 0.00 0.00 3.71
4186 4601 7.958088 ACTAGGCTCTATAGTTTCTGATTTCC 58.042 38.462 0.00 0.00 29.01 3.13
4187 4602 7.787424 ACTAGGCTCTATAGTTTCTGATTTCCT 59.213 37.037 0.00 0.00 29.01 3.36
4188 4603 6.825610 AGGCTCTATAGTTTCTGATTTCCTG 58.174 40.000 0.00 0.00 0.00 3.86
4189 4604 6.613271 AGGCTCTATAGTTTCTGATTTCCTGA 59.387 38.462 0.00 0.00 0.00 3.86
4190 4605 7.292120 AGGCTCTATAGTTTCTGATTTCCTGAT 59.708 37.037 0.00 0.00 0.00 2.90
4191 4606 7.936301 GGCTCTATAGTTTCTGATTTCCTGATT 59.064 37.037 0.00 0.00 0.00 2.57
4192 4607 9.336171 GCTCTATAGTTTCTGATTTCCTGATTT 57.664 33.333 0.00 0.00 0.00 2.17
4276 4697 2.301296 AGTGTTGACCATCTCTGACAGG 59.699 50.000 1.81 0.00 0.00 4.00
4365 4786 5.630121 TCAACACATACAAATTCAGGACCT 58.370 37.500 0.00 0.00 0.00 3.85
4366 4787 6.774673 TCAACACATACAAATTCAGGACCTA 58.225 36.000 0.00 0.00 0.00 3.08
4407 4828 5.039333 GTGATGCTATGAAAACATCTTGGC 58.961 41.667 0.00 0.00 40.66 4.52
4431 4852 6.072508 GCGCATATCCAGGATATTTCAGAAAA 60.073 38.462 18.31 0.00 33.52 2.29
4451 4872 3.636282 AAAAACATGTAGTTGGACGGC 57.364 42.857 0.00 0.00 41.19 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.222953 CTTAGTTTGGCACGACGGCG 62.223 60.000 10.39 10.39 45.16 6.46
23 24 0.947180 TCTTAGTTTGGCACGACGGC 60.947 55.000 0.00 0.00 41.67 5.68
24 25 1.068474 CTCTTAGTTTGGCACGACGG 58.932 55.000 0.00 0.00 0.00 4.79
25 26 0.438830 GCTCTTAGTTTGGCACGACG 59.561 55.000 0.00 0.00 0.00 5.12
26 27 1.194772 GTGCTCTTAGTTTGGCACGAC 59.805 52.381 0.00 0.00 43.91 4.34
27 28 1.508632 GTGCTCTTAGTTTGGCACGA 58.491 50.000 0.00 0.00 43.91 4.35
30 31 1.545428 CCCTGTGCTCTTAGTTTGGCA 60.545 52.381 0.00 0.00 0.00 4.92
31 32 1.168714 CCCTGTGCTCTTAGTTTGGC 58.831 55.000 0.00 0.00 0.00 4.52
32 33 1.826385 CCCCTGTGCTCTTAGTTTGG 58.174 55.000 0.00 0.00 0.00 3.28
33 34 1.168714 GCCCCTGTGCTCTTAGTTTG 58.831 55.000 0.00 0.00 0.00 2.93
34 35 0.771127 TGCCCCTGTGCTCTTAGTTT 59.229 50.000 0.00 0.00 0.00 2.66
35 36 0.995024 ATGCCCCTGTGCTCTTAGTT 59.005 50.000 0.00 0.00 0.00 2.24
36 37 0.254178 CATGCCCCTGTGCTCTTAGT 59.746 55.000 0.00 0.00 0.00 2.24
37 38 0.465097 CCATGCCCCTGTGCTCTTAG 60.465 60.000 0.00 0.00 0.00 2.18
38 39 1.609239 CCATGCCCCTGTGCTCTTA 59.391 57.895 0.00 0.00 0.00 2.10
39 40 2.357836 CCATGCCCCTGTGCTCTT 59.642 61.111 0.00 0.00 0.00 2.85
40 41 4.437587 GCCATGCCCCTGTGCTCT 62.438 66.667 0.00 0.00 0.00 4.09
55 56 2.569072 GAACCCTAGGACGAACGGCC 62.569 65.000 11.48 11.46 45.79 6.13
56 57 1.153686 GAACCCTAGGACGAACGGC 60.154 63.158 11.48 0.00 0.00 5.68
57 58 1.252904 TGGAACCCTAGGACGAACGG 61.253 60.000 11.48 0.00 0.00 4.44
58 59 0.108945 GTGGAACCCTAGGACGAACG 60.109 60.000 11.48 0.00 0.00 3.95
59 60 0.108945 CGTGGAACCCTAGGACGAAC 60.109 60.000 11.48 0.95 31.71 3.95
60 61 1.880819 GCGTGGAACCCTAGGACGAA 61.881 60.000 20.64 0.00 31.71 3.85
61 62 2.345760 GCGTGGAACCCTAGGACGA 61.346 63.158 20.64 3.25 31.71 4.20
62 63 2.183555 GCGTGGAACCCTAGGACG 59.816 66.667 11.48 13.02 0.00 4.79
63 64 2.582978 GGCGTGGAACCCTAGGAC 59.417 66.667 11.48 0.00 0.00 3.85
64 65 3.072468 CGGCGTGGAACCCTAGGA 61.072 66.667 11.48 0.00 0.00 2.94
65 66 4.832608 GCGGCGTGGAACCCTAGG 62.833 72.222 9.37 0.06 0.00 3.02
66 67 4.832608 GGCGGCGTGGAACCCTAG 62.833 72.222 9.37 0.00 0.00 3.02
80 81 0.242825 TATTTATCTCTCCCGCGGCG 59.757 55.000 22.85 16.78 0.00 6.46
81 82 1.672145 GGTATTTATCTCTCCCGCGGC 60.672 57.143 22.85 0.00 0.00 6.53
82 83 1.402456 CGGTATTTATCTCTCCCGCGG 60.402 57.143 21.04 21.04 0.00 6.46
83 84 1.538512 TCGGTATTTATCTCTCCCGCG 59.461 52.381 0.00 0.00 35.52 6.46
84 85 3.731264 CGATCGGTATTTATCTCTCCCGC 60.731 52.174 7.38 0.00 35.52 6.13
85 86 3.688185 TCGATCGGTATTTATCTCTCCCG 59.312 47.826 16.41 0.00 36.83 5.14
86 87 4.942483 TCTCGATCGGTATTTATCTCTCCC 59.058 45.833 16.41 0.00 0.00 4.30
87 88 5.644636 ACTCTCGATCGGTATTTATCTCTCC 59.355 44.000 16.41 0.00 0.00 3.71
88 89 6.730960 ACTCTCGATCGGTATTTATCTCTC 57.269 41.667 16.41 0.00 0.00 3.20
89 90 7.388437 ACTACTCTCGATCGGTATTTATCTCT 58.612 38.462 16.41 0.00 0.00 3.10
90 91 7.599630 ACTACTCTCGATCGGTATTTATCTC 57.400 40.000 16.41 0.00 0.00 2.75
91 92 7.982761 AACTACTCTCGATCGGTATTTATCT 57.017 36.000 16.41 0.00 0.00 1.98
97 98 8.675504 CCATAATAAACTACTCTCGATCGGTAT 58.324 37.037 16.41 1.29 0.00 2.73
98 99 7.361542 GCCATAATAAACTACTCTCGATCGGTA 60.362 40.741 16.41 8.79 0.00 4.02
99 100 6.569994 GCCATAATAAACTACTCTCGATCGGT 60.570 42.308 16.41 8.02 0.00 4.69
100 101 5.800941 GCCATAATAAACTACTCTCGATCGG 59.199 44.000 16.41 6.26 0.00 4.18
101 102 5.508573 CGCCATAATAAACTACTCTCGATCG 59.491 44.000 9.36 9.36 0.00 3.69
102 103 5.286558 GCGCCATAATAAACTACTCTCGATC 59.713 44.000 0.00 0.00 0.00 3.69
103 104 5.047943 AGCGCCATAATAAACTACTCTCGAT 60.048 40.000 2.29 0.00 0.00 3.59
104 105 4.277672 AGCGCCATAATAAACTACTCTCGA 59.722 41.667 2.29 0.00 0.00 4.04
105 106 4.547532 AGCGCCATAATAAACTACTCTCG 58.452 43.478 2.29 0.00 0.00 4.04
106 107 5.983720 TCAAGCGCCATAATAAACTACTCTC 59.016 40.000 2.29 0.00 0.00 3.20
107 108 5.914033 TCAAGCGCCATAATAAACTACTCT 58.086 37.500 2.29 0.00 0.00 3.24
108 109 6.787085 ATCAAGCGCCATAATAAACTACTC 57.213 37.500 2.29 0.00 0.00 2.59
109 110 7.214381 TGTATCAAGCGCCATAATAAACTACT 58.786 34.615 2.29 0.00 0.00 2.57
110 111 7.170998 ACTGTATCAAGCGCCATAATAAACTAC 59.829 37.037 2.29 0.00 0.00 2.73
111 112 7.214381 ACTGTATCAAGCGCCATAATAAACTA 58.786 34.615 2.29 0.00 0.00 2.24
112 113 6.055588 ACTGTATCAAGCGCCATAATAAACT 58.944 36.000 2.29 0.00 0.00 2.66
113 114 6.300354 ACTGTATCAAGCGCCATAATAAAC 57.700 37.500 2.29 0.00 0.00 2.01
114 115 5.468746 GGACTGTATCAAGCGCCATAATAAA 59.531 40.000 2.29 0.00 0.00 1.40
115 116 4.994852 GGACTGTATCAAGCGCCATAATAA 59.005 41.667 2.29 0.00 0.00 1.40
116 117 4.283467 AGGACTGTATCAAGCGCCATAATA 59.717 41.667 2.29 0.00 0.00 0.98
117 118 3.071602 AGGACTGTATCAAGCGCCATAAT 59.928 43.478 2.29 0.00 0.00 1.28
118 119 2.434336 AGGACTGTATCAAGCGCCATAA 59.566 45.455 2.29 0.00 0.00 1.90
119 120 2.039418 AGGACTGTATCAAGCGCCATA 58.961 47.619 2.29 0.00 0.00 2.74
120 121 0.833287 AGGACTGTATCAAGCGCCAT 59.167 50.000 2.29 0.00 0.00 4.40
121 122 0.108186 CAGGACTGTATCAAGCGCCA 60.108 55.000 2.29 0.00 0.00 5.69
122 123 1.432270 GCAGGACTGTATCAAGCGCC 61.432 60.000 2.29 0.00 0.00 6.53
123 124 1.756375 CGCAGGACTGTATCAAGCGC 61.756 60.000 0.00 0.00 42.55 5.92
124 125 2.291843 CGCAGGACTGTATCAAGCG 58.708 57.895 0.82 0.00 42.89 4.68
125 126 1.281899 GACGCAGGACTGTATCAAGC 58.718 55.000 0.82 0.00 0.00 4.01
126 127 1.204704 TGGACGCAGGACTGTATCAAG 59.795 52.381 0.82 0.00 0.00 3.02
127 128 1.204704 CTGGACGCAGGACTGTATCAA 59.795 52.381 0.82 0.00 0.00 2.57
128 129 0.817654 CTGGACGCAGGACTGTATCA 59.182 55.000 0.82 0.00 0.00 2.15
129 130 0.103208 CCTGGACGCAGGACTGTATC 59.897 60.000 3.13 0.00 45.00 2.24
130 131 0.324368 TCCTGGACGCAGGACTGTAT 60.324 55.000 7.61 0.00 45.70 2.29
131 132 1.076014 TCCTGGACGCAGGACTGTA 59.924 57.895 7.61 0.00 45.70 2.74
132 133 2.203640 TCCTGGACGCAGGACTGT 60.204 61.111 7.61 0.00 45.70 3.55
137 138 1.247567 AAAACAATCCTGGACGCAGG 58.752 50.000 0.00 2.85 43.59 4.85
138 139 2.664916 CAAAAACAATCCTGGACGCAG 58.335 47.619 0.00 0.00 0.00 5.18
139 140 1.269517 GCAAAAACAATCCTGGACGCA 60.270 47.619 0.00 0.00 0.00 5.24
140 141 1.269517 TGCAAAAACAATCCTGGACGC 60.270 47.619 0.00 0.00 0.00 5.19
141 142 2.791383 TGCAAAAACAATCCTGGACG 57.209 45.000 0.00 0.00 0.00 4.79
142 143 4.441792 ACTTTGCAAAAACAATCCTGGAC 58.558 39.130 13.84 0.00 0.00 4.02
143 144 4.751767 ACTTTGCAAAAACAATCCTGGA 57.248 36.364 13.84 0.00 0.00 3.86
144 145 6.917217 TTTACTTTGCAAAAACAATCCTGG 57.083 33.333 13.84 0.00 0.00 4.45
145 146 7.904461 CAGTTTTACTTTGCAAAAACAATCCTG 59.096 33.333 20.75 14.00 44.34 3.86
146 147 7.606073 ACAGTTTTACTTTGCAAAAACAATCCT 59.394 29.630 20.75 7.72 44.34 3.24
147 148 7.747888 ACAGTTTTACTTTGCAAAAACAATCC 58.252 30.769 20.75 5.94 44.34 3.01
148 149 9.049974 CAACAGTTTTACTTTGCAAAAACAATC 57.950 29.630 20.75 10.30 44.34 2.67
149 150 8.020244 CCAACAGTTTTACTTTGCAAAAACAAT 58.980 29.630 20.75 9.64 44.34 2.71
150 151 7.012421 ACCAACAGTTTTACTTTGCAAAAACAA 59.988 29.630 20.75 10.24 44.34 2.83
151 152 6.483640 ACCAACAGTTTTACTTTGCAAAAACA 59.516 30.769 20.75 3.47 44.34 2.83
152 153 6.893759 ACCAACAGTTTTACTTTGCAAAAAC 58.106 32.000 13.84 13.93 42.97 2.43
153 154 8.660373 CATACCAACAGTTTTACTTTGCAAAAA 58.340 29.630 13.84 2.57 0.00 1.94
154 155 7.278868 CCATACCAACAGTTTTACTTTGCAAAA 59.721 33.333 13.84 0.00 0.00 2.44
155 156 6.758886 CCATACCAACAGTTTTACTTTGCAAA 59.241 34.615 12.14 12.14 0.00 3.68
156 157 6.276847 CCATACCAACAGTTTTACTTTGCAA 58.723 36.000 0.00 0.00 0.00 4.08
157 158 5.221342 CCCATACCAACAGTTTTACTTTGCA 60.221 40.000 0.00 0.00 0.00 4.08
158 159 5.227152 CCCATACCAACAGTTTTACTTTGC 58.773 41.667 0.00 0.00 0.00 3.68
159 160 5.010617 AGCCCATACCAACAGTTTTACTTTG 59.989 40.000 0.00 0.00 0.00 2.77
160 161 5.144832 AGCCCATACCAACAGTTTTACTTT 58.855 37.500 0.00 0.00 0.00 2.66
161 162 4.736473 AGCCCATACCAACAGTTTTACTT 58.264 39.130 0.00 0.00 0.00 2.24
162 163 4.382386 AGCCCATACCAACAGTTTTACT 57.618 40.909 0.00 0.00 0.00 2.24
163 164 5.005094 TGTAGCCCATACCAACAGTTTTAC 58.995 41.667 0.00 0.00 33.01 2.01
164 165 5.244189 TGTAGCCCATACCAACAGTTTTA 57.756 39.130 0.00 0.00 33.01 1.52
165 166 4.079253 CTGTAGCCCATACCAACAGTTTT 58.921 43.478 0.00 0.00 34.28 2.43
166 167 3.561313 CCTGTAGCCCATACCAACAGTTT 60.561 47.826 0.00 0.00 36.63 2.66
167 168 2.026262 CCTGTAGCCCATACCAACAGTT 60.026 50.000 0.00 0.00 36.63 3.16
168 169 1.559682 CCTGTAGCCCATACCAACAGT 59.440 52.381 0.00 0.00 36.63 3.55
169 170 1.747206 GCCTGTAGCCCATACCAACAG 60.747 57.143 0.00 0.00 37.81 3.16
170 171 0.254747 GCCTGTAGCCCATACCAACA 59.745 55.000 0.00 0.00 33.01 3.33
171 172 0.814010 CGCCTGTAGCCCATACCAAC 60.814 60.000 0.00 0.00 38.78 3.77
172 173 1.524961 CGCCTGTAGCCCATACCAA 59.475 57.895 0.00 0.00 38.78 3.67
173 174 2.439960 CCGCCTGTAGCCCATACCA 61.440 63.158 0.00 0.00 38.78 3.25
174 175 2.426023 CCGCCTGTAGCCCATACC 59.574 66.667 0.00 0.00 38.78 2.73
175 176 2.426023 CCCGCCTGTAGCCCATAC 59.574 66.667 0.00 0.00 38.78 2.39
176 177 3.556306 GCCCGCCTGTAGCCCATA 61.556 66.667 0.00 0.00 38.78 2.74
196 197 6.499234 AATTTCCAGTTATTTTGCATTGGC 57.501 33.333 0.00 0.00 41.68 4.52
197 198 8.450180 GGTTAATTTCCAGTTATTTTGCATTGG 58.550 33.333 0.00 0.00 0.00 3.16
198 199 8.997323 TGGTTAATTTCCAGTTATTTTGCATTG 58.003 29.630 0.00 0.00 0.00 2.82
199 200 9.566432 TTGGTTAATTTCCAGTTATTTTGCATT 57.434 25.926 0.00 0.00 36.28 3.56
200 201 9.566432 TTTGGTTAATTTCCAGTTATTTTGCAT 57.434 25.926 0.00 0.00 36.28 3.96
201 202 8.964476 TTTGGTTAATTTCCAGTTATTTTGCA 57.036 26.923 3.03 0.00 36.28 4.08
202 203 9.658475 GTTTTGGTTAATTTCCAGTTATTTTGC 57.342 29.630 3.03 0.00 36.28 3.68
204 205 9.907229 TGGTTTTGGTTAATTTCCAGTTATTTT 57.093 25.926 3.03 0.00 36.28 1.82
205 206 9.907229 TTGGTTTTGGTTAATTTCCAGTTATTT 57.093 25.926 3.03 0.00 36.28 1.40
206 207 9.907229 TTTGGTTTTGGTTAATTTCCAGTTATT 57.093 25.926 3.03 0.00 36.28 1.40
207 208 9.554395 CTTTGGTTTTGGTTAATTTCCAGTTAT 57.446 29.630 3.03 0.00 36.28 1.89
208 209 7.988028 CCTTTGGTTTTGGTTAATTTCCAGTTA 59.012 33.333 3.03 0.00 36.28 2.24
209 210 6.826231 CCTTTGGTTTTGGTTAATTTCCAGTT 59.174 34.615 3.03 0.00 36.28 3.16
210 211 6.157123 TCCTTTGGTTTTGGTTAATTTCCAGT 59.843 34.615 3.03 0.00 36.28 4.00
211 212 6.587273 TCCTTTGGTTTTGGTTAATTTCCAG 58.413 36.000 3.03 0.00 36.28 3.86
212 213 6.561519 TCCTTTGGTTTTGGTTAATTTCCA 57.438 33.333 0.00 0.00 0.00 3.53
213 214 7.717436 TGAATCCTTTGGTTTTGGTTAATTTCC 59.283 33.333 0.00 0.00 0.00 3.13
214 215 8.669946 TGAATCCTTTGGTTTTGGTTAATTTC 57.330 30.769 0.00 0.00 0.00 2.17
215 216 8.675705 CTGAATCCTTTGGTTTTGGTTAATTT 57.324 30.769 0.00 0.00 0.00 1.82
591 592 9.615295 TTTGTTTCTCTTATTAATTACGGCAAC 57.385 29.630 0.00 0.00 0.00 4.17
685 761 7.360607 CGGACGGAATTGTTTAGAAATTACACT 60.361 37.037 0.00 0.00 29.66 3.55
726 836 9.137459 GCCTCTCTTATATATACTGCTGGATTA 57.863 37.037 0.00 0.00 0.00 1.75
750 860 0.790814 GTTCACAGTACAGCTTCGCC 59.209 55.000 0.00 0.00 0.00 5.54
818 928 4.114794 CACTTTGCTCTTTTTGTTGAGGG 58.885 43.478 0.00 0.00 0.00 4.30
890 1000 3.839432 CCTCGGGAAGGCGGAGAC 61.839 72.222 0.00 0.00 38.67 3.36
929 1039 6.931840 AGGAGTATGTCTTCTCTTTTGTTGTC 59.068 38.462 0.00 0.00 0.00 3.18
981 1091 3.047877 CCTTGGTGACGTTCGGCC 61.048 66.667 0.00 0.00 0.00 6.13
1105 1218 3.682372 GAAGATCCAAATCGCTTCCAC 57.318 47.619 0.00 0.00 36.97 4.02
1272 1390 4.104417 GCGTCCGAGCTCGACTGT 62.104 66.667 36.59 0.00 43.02 3.55
1473 1591 4.927978 ATCAAACTCTAGGAGGACGATG 57.072 45.455 0.00 0.00 33.35 3.84
1474 1592 5.697067 AGTATCAAACTCTAGGAGGACGAT 58.303 41.667 0.00 1.26 30.33 3.73
1475 1593 5.113446 AGTATCAAACTCTAGGAGGACGA 57.887 43.478 0.00 0.00 30.33 4.20
1480 1598 9.403583 GATAGGGATAGTATCAAACTCTAGGAG 57.596 40.741 12.19 0.00 39.80 3.69
1670 1789 6.034591 AGTCGTAATCTCGTGAAATACAAGG 58.965 40.000 11.76 0.79 0.00 3.61
1685 1804 5.581085 ACAAGGTAGCAATTGAGTCGTAATC 59.419 40.000 10.34 0.00 0.00 1.75
1709 1828 6.852420 ACTGGACATTAGTCACTTAAGCTA 57.148 37.500 1.29 0.00 46.80 3.32
1711 1830 5.351740 GGAACTGGACATTAGTCACTTAAGC 59.648 44.000 1.29 0.00 46.80 3.09
1712 1831 6.702329 AGGAACTGGACATTAGTCACTTAAG 58.298 40.000 0.00 0.00 46.80 1.85
1738 1862 1.525619 GTTAACGTCAGTGTCACTGGC 59.474 52.381 28.47 26.69 46.75 4.85
1764 1888 3.382227 TCGTCAGAACTCCAAAGTGTGTA 59.618 43.478 0.00 0.00 35.36 2.90
1765 1889 2.167693 TCGTCAGAACTCCAAAGTGTGT 59.832 45.455 0.00 0.00 35.36 3.72
1766 1890 2.540101 GTCGTCAGAACTCCAAAGTGTG 59.460 50.000 0.00 0.00 35.36 3.82
1767 1891 2.798499 CGTCGTCAGAACTCCAAAGTGT 60.798 50.000 0.00 0.00 35.36 3.55
1768 1892 1.787155 CGTCGTCAGAACTCCAAAGTG 59.213 52.381 0.00 0.00 35.36 3.16
1861 2015 3.003173 TGGACCAAGAGCGGGGAG 61.003 66.667 0.00 0.00 0.00 4.30
1894 2048 2.109126 GTGCCCGTTCAGCATCTCC 61.109 63.158 0.00 0.00 43.29 3.71
1942 2096 4.144703 GACTTCCCTCCCGGCGTC 62.145 72.222 6.01 0.00 0.00 5.19
2042 2196 2.800523 GAAGGGGAAGGGGAAGGGGA 62.801 65.000 0.00 0.00 0.00 4.81
2043 2197 2.204464 AAGGGGAAGGGGAAGGGG 60.204 66.667 0.00 0.00 0.00 4.79
2044 2198 2.317378 GGAAGGGGAAGGGGAAGGG 61.317 68.421 0.00 0.00 0.00 3.95
2045 2199 2.317378 GGGAAGGGGAAGGGGAAGG 61.317 68.421 0.00 0.00 0.00 3.46
2046 2200 2.317378 GGGGAAGGGGAAGGGGAAG 61.317 68.421 0.00 0.00 0.00 3.46
2047 2201 2.204401 GGGGAAGGGGAAGGGGAA 60.204 66.667 0.00 0.00 0.00 3.97
2048 2202 2.385232 AAAGGGGAAGGGGAAGGGGA 62.385 60.000 0.00 0.00 0.00 4.81
2085 2239 5.000591 TGATTGGATCTAAGCAACACGAAA 58.999 37.500 7.35 0.00 0.00 3.46
2087 2241 3.932710 GTGATTGGATCTAAGCAACACGA 59.067 43.478 11.57 0.00 0.00 4.35
2089 2243 4.937620 TCAGTGATTGGATCTAAGCAACAC 59.062 41.667 11.57 11.01 0.00 3.32
2090 2244 5.164620 TCAGTGATTGGATCTAAGCAACA 57.835 39.130 11.57 0.00 0.00 3.33
2091 2245 5.163713 GGTTCAGTGATTGGATCTAAGCAAC 60.164 44.000 11.57 6.23 0.00 4.17
2092 2246 4.943705 GGTTCAGTGATTGGATCTAAGCAA 59.056 41.667 11.57 0.00 0.00 3.91
2123 2277 3.673746 TTTGAGTTTTGACACTCTGCG 57.326 42.857 2.70 0.00 43.32 5.18
2133 2287 8.237267 AGTTCTAGTTGACACTTTTGAGTTTTG 58.763 33.333 0.00 0.00 34.06 2.44
2134 2288 8.336801 AGTTCTAGTTGACACTTTTGAGTTTT 57.663 30.769 0.00 0.00 34.06 2.43
2135 2289 7.923414 AGTTCTAGTTGACACTTTTGAGTTT 57.077 32.000 0.00 0.00 34.06 2.66
2136 2290 7.711339 CCTAGTTCTAGTTGACACTTTTGAGTT 59.289 37.037 6.18 0.00 34.06 3.01
2137 2291 7.210873 CCTAGTTCTAGTTGACACTTTTGAGT 58.789 38.462 6.18 0.00 34.06 3.41
2138 2292 6.146347 GCCTAGTTCTAGTTGACACTTTTGAG 59.854 42.308 6.18 0.00 34.06 3.02
2139 2293 5.989777 GCCTAGTTCTAGTTGACACTTTTGA 59.010 40.000 6.18 0.00 34.06 2.69
2221 2381 3.496870 GCCTAACATGTCCAGGGAATAGG 60.497 52.174 21.85 16.38 33.42 2.57
2228 2388 0.537188 AGTCGCCTAACATGTCCAGG 59.463 55.000 18.10 18.10 0.00 4.45
2253 2416 2.159184 AGCGTACTGTCACTGATCCATG 60.159 50.000 0.00 0.00 0.00 3.66
2265 2428 2.030185 ACGACAAATGAGAGCGTACTGT 60.030 45.455 0.00 0.00 32.94 3.55
2308 2471 4.572571 AGCACGGCGGGTTTTGGA 62.573 61.111 12.27 0.00 0.00 3.53
2345 2508 0.937304 CGCCTAATGATGGTTCGTGG 59.063 55.000 0.00 0.00 0.00 4.94
2380 2543 4.100344 TGAACTTGCAAGGTACACTCACTA 59.900 41.667 29.18 0.32 0.00 2.74
2459 2643 2.822764 CTATTGCTAGGTCCGGTTGAC 58.177 52.381 0.00 0.00 43.67 3.18
2496 2680 3.827898 GTCCCGCTCCCGTCAGAG 61.828 72.222 0.00 0.00 36.92 3.35
2510 2694 0.753848 AAGCTAGAGGAGAGCCGTCC 60.754 60.000 0.00 0.00 41.06 4.79
2524 2708 1.330655 CGGCTCCCTTCCTCAAGCTA 61.331 60.000 0.00 0.00 35.12 3.32
2595 2779 3.621805 TGCACCATCACCGGTCGT 61.622 61.111 2.59 0.00 37.07 4.34
2714 2898 0.602638 GTTGGTCGATCACAGTGGCA 60.603 55.000 0.00 0.00 0.00 4.92
2720 2904 1.877637 CTGGTTGTTGGTCGATCACA 58.122 50.000 0.00 0.00 0.00 3.58
2758 2963 8.979574 CGACTTATAAAAGTGAACAGAGAAAGT 58.020 33.333 0.00 0.00 46.09 2.66
2759 2964 8.979574 ACGACTTATAAAAGTGAACAGAGAAAG 58.020 33.333 0.00 0.00 46.09 2.62
2760 2965 8.882415 ACGACTTATAAAAGTGAACAGAGAAA 57.118 30.769 0.00 0.00 46.09 2.52
2762 2967 8.882415 AAACGACTTATAAAAGTGAACAGAGA 57.118 30.769 0.00 0.00 46.09 3.10
2794 2999 6.425721 AGACGATGGTTTTAGACATTTCGAAA 59.574 34.615 13.91 13.91 32.90 3.46
2795 3000 5.929992 AGACGATGGTTTTAGACATTTCGAA 59.070 36.000 0.00 0.00 32.90 3.71
2796 3001 5.347635 CAGACGATGGTTTTAGACATTTCGA 59.652 40.000 0.00 0.00 32.90 3.71
2797 3002 5.347635 TCAGACGATGGTTTTAGACATTTCG 59.652 40.000 0.00 0.00 34.01 3.46
2798 3003 6.721571 TCAGACGATGGTTTTAGACATTTC 57.278 37.500 0.00 0.00 0.00 2.17
2800 3005 7.174946 ACATTTCAGACGATGGTTTTAGACATT 59.825 33.333 0.00 0.00 0.00 2.71
2802 3007 5.995282 ACATTTCAGACGATGGTTTTAGACA 59.005 36.000 0.00 0.00 0.00 3.41
2804 3009 6.464222 AGACATTTCAGACGATGGTTTTAGA 58.536 36.000 0.00 0.00 0.00 2.10
2806 3011 8.610248 TTTAGACATTTCAGACGATGGTTTTA 57.390 30.769 0.00 0.00 0.00 1.52
2807 3012 7.504924 TTTAGACATTTCAGACGATGGTTTT 57.495 32.000 0.00 0.00 0.00 2.43
2808 3013 7.360361 GTTTTAGACATTTCAGACGATGGTTT 58.640 34.615 0.00 0.00 0.00 3.27
2809 3014 6.072673 GGTTTTAGACATTTCAGACGATGGTT 60.073 38.462 0.00 0.00 0.00 3.67
2810 3015 5.411669 GGTTTTAGACATTTCAGACGATGGT 59.588 40.000 0.00 0.00 0.00 3.55
2811 3016 5.411361 TGGTTTTAGACATTTCAGACGATGG 59.589 40.000 0.00 0.00 0.00 3.51
2812 3017 6.480524 TGGTTTTAGACATTTCAGACGATG 57.519 37.500 0.00 0.00 0.00 3.84
2814 3019 5.347635 CGATGGTTTTAGACATTTCAGACGA 59.652 40.000 0.00 0.00 0.00 4.20
2815 3020 5.120208 ACGATGGTTTTAGACATTTCAGACG 59.880 40.000 0.00 0.00 0.00 4.18
2868 3089 4.872357 CGAGAGCAATGCCTCCAT 57.128 55.556 14.84 0.00 32.17 3.41
2921 3142 2.418976 GCATAGAAACTTCCCGGTTGTC 59.581 50.000 0.00 0.00 0.00 3.18
2955 3176 0.179020 CGGCTCCAGGGCATTGATTA 60.179 55.000 0.00 0.00 40.90 1.75
2976 3197 6.817765 TTAAAGGGTTCAACAGTGATGATC 57.182 37.500 3.69 3.58 32.48 2.92
3005 3226 5.304686 AGATTTGGTGTGAGGTACTTCAA 57.695 39.130 9.54 0.00 41.55 2.69
3063 3288 8.499406 ACAGTGTAGATATCTCTAGTCTCCTTT 58.501 37.037 8.95 0.00 34.63 3.11
3078 3303 3.639672 TCCGTCTGGACAGTGTAGATA 57.360 47.619 0.00 0.00 40.17 1.98
3090 3315 1.070134 TCCTCAAGTTTGTCCGTCTGG 59.930 52.381 0.00 0.00 0.00 3.86
3126 3368 5.644644 CAGCGCTTCTTCCTCAAATTTATT 58.355 37.500 7.50 0.00 0.00 1.40
3177 3421 1.636988 CCGTTCCGGCTAGTAGTTTG 58.363 55.000 0.00 0.00 41.17 2.93
3205 3449 3.630312 GCGAACACTCTCTTCTAGGATCT 59.370 47.826 0.00 0.00 0.00 2.75
3217 3461 3.241530 TGCTGGGGCGAACACTCT 61.242 61.111 0.00 0.00 42.25 3.24
3234 3478 1.075896 CTCCCCTTCTCCTACGGCT 60.076 63.158 0.00 0.00 0.00 5.52
3236 3480 1.861982 TTTCTCCCCTTCTCCTACGG 58.138 55.000 0.00 0.00 0.00 4.02
3239 3483 3.579742 ACCTTTTCTCCCCTTCTCCTA 57.420 47.619 0.00 0.00 0.00 2.94
3261 3505 4.737855 TTAGGCTACTCCAGATCAACAC 57.262 45.455 0.00 0.00 37.29 3.32
3426 3836 4.829492 AGGAGGAAAAATCAGTTGGAGTTG 59.171 41.667 0.00 0.00 33.39 3.16
3450 3860 1.474077 GCTGGACCTGCATAAACAAGG 59.526 52.381 17.78 0.00 0.00 3.61
3479 3889 3.935828 GGGTGAAGTAGAGCAGAATCAAC 59.064 47.826 0.00 0.00 0.00 3.18
3511 3921 3.869272 CGGCGCTGTCCATCTTGC 61.869 66.667 8.45 0.00 0.00 4.01
3701 4111 2.138320 CTGCTATGTATTCTGCGGTGG 58.862 52.381 0.00 0.00 0.00 4.61
3705 4115 2.054363 CCGTCTGCTATGTATTCTGCG 58.946 52.381 0.00 0.00 0.00 5.18
3744 4154 2.325661 TCTCCATCAGGACCTCAACA 57.674 50.000 0.00 0.00 39.61 3.33
3839 4249 5.519722 CAAAAGCGACTGGTATTCTTTTGT 58.480 37.500 14.18 0.00 43.85 2.83
3861 4275 1.966901 AACCCTATCATCGGCGCACA 61.967 55.000 10.83 0.00 0.00 4.57
3867 4281 3.127425 GGGAGAAAACCCTATCATCGG 57.873 52.381 0.00 0.00 45.90 4.18
3886 4300 6.128035 TGCTTATGTTTGCAGTATGTGTAAGG 60.128 38.462 0.00 0.00 39.31 2.69
4186 4601 0.179171 CAGCAGCGAGGCAAAATCAG 60.179 55.000 1.57 0.00 35.83 2.90
4187 4602 1.878070 CAGCAGCGAGGCAAAATCA 59.122 52.632 1.57 0.00 35.83 2.57
4188 4603 1.515736 GCAGCAGCGAGGCAAAATC 60.516 57.895 1.57 0.00 35.83 2.17
4189 4604 2.209064 CTGCAGCAGCGAGGCAAAAT 62.209 55.000 10.14 0.00 46.23 1.82
4190 4605 2.906388 TGCAGCAGCGAGGCAAAA 60.906 55.556 6.93 0.00 46.23 2.44
4191 4606 3.359523 CTGCAGCAGCGAGGCAAA 61.360 61.111 10.14 0.00 46.23 3.68
4192 4607 3.830464 TTCTGCAGCAGCGAGGCAA 62.830 57.895 18.43 2.52 46.23 4.52
4193 4608 4.318949 TTCTGCAGCAGCGAGGCA 62.319 61.111 18.43 8.78 46.23 4.75
4276 4697 4.688413 GCTCCAATTCGAGTCTATGATTCC 59.312 45.833 1.92 0.00 32.11 3.01
4365 4786 5.767816 TCACGACTATGATGCTTAGCTTA 57.232 39.130 5.60 0.00 0.00 3.09
4366 4787 4.655762 TCACGACTATGATGCTTAGCTT 57.344 40.909 5.60 0.00 0.00 3.74
4407 4828 7.439157 TTTTCTGAAATATCCTGGATATGCG 57.561 36.000 25.82 15.56 35.67 4.73
4431 4852 2.952978 TGCCGTCCAACTACATGTTTTT 59.047 40.909 2.30 0.00 36.63 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.