Multiple sequence alignment - TraesCS2D01G224100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G224100 chr2D 100.000 4677 0 0 1 4677 191233169 191237845 0.000000e+00 8637
1 TraesCS2D01G224100 chr2B 92.947 2382 107 22 2312 4677 248659389 248657053 0.000000e+00 3411
2 TraesCS2D01G224100 chr2B 93.615 877 33 8 657 1524 248661399 248660537 0.000000e+00 1288
3 TraesCS2D01G224100 chr2B 93.494 415 19 6 1882 2294 248659974 248659566 1.110000e-170 610
4 TraesCS2D01G224100 chr2B 89.058 329 18 11 1550 1876 248660455 248660143 4.390000e-105 392
5 TraesCS2D01G224100 chr2A 93.296 895 20 17 657 1524 206413163 206412282 0.000000e+00 1284
6 TraesCS2D01G224100 chr2A 92.316 911 56 9 2316 3215 206411296 206410389 0.000000e+00 1282
7 TraesCS2D01G224100 chr2A 92.784 873 23 16 3193 4052 206410277 206409432 0.000000e+00 1227
8 TraesCS2D01G224100 chr2A 92.914 748 36 10 1550 2294 206412201 206411468 0.000000e+00 1072
9 TraesCS2D01G224100 chr2A 93.178 645 31 8 4038 4677 206406424 206405788 0.000000e+00 935


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G224100 chr2D 191233169 191237845 4676 False 8637.00 8637 100.0000 1 4677 1 chr2D.!!$F1 4676
1 TraesCS2D01G224100 chr2B 248657053 248661399 4346 True 1425.25 3411 92.2785 657 4677 4 chr2B.!!$R1 4020
2 TraesCS2D01G224100 chr2A 206405788 206413163 7375 True 1160.00 1284 92.8976 657 4677 5 chr2A.!!$R1 4020

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.037232 GAGAACGACCTGGGTTCCTG 60.037 60.0 10.91 0.0 43.70 3.86 F
618 619 0.041839 CGCTATTGGTCGCATTGAGC 60.042 55.0 0.00 0.0 45.46 4.26 F
632 633 0.391661 TTGAGCGTCCAATGAGAGCC 60.392 55.0 0.00 0.0 0.00 4.70 F
642 643 0.475906 AATGAGAGCCCCCACATAGC 59.524 55.0 0.00 0.0 0.00 2.97 F
643 644 0.695462 ATGAGAGCCCCCACATAGCA 60.695 55.0 0.00 0.0 0.00 3.49 F
2293 2665 0.764890 AACTGCTTGGTGCTAGGACA 59.235 50.0 16.81 0.0 43.37 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1528 1605 0.236711 CAAACTGTCTTCTGGCTGCG 59.763 55.000 0.00 0.00 0.00 5.18 R
1792 1882 0.257039 ATTAGCTTCCTGCAGGTGGG 59.743 55.000 31.58 21.81 45.94 4.61 R
2497 2910 1.503818 GCTCCTTGTTCGTTTCGGCA 61.504 55.000 0.00 0.00 0.00 5.69 R
2540 2953 6.599244 TGGATAGTTTGCCTCAAATTCTGTAG 59.401 38.462 0.00 0.00 35.74 2.74 R
2642 3055 9.651718 GGTTTAAACTGAAATTATAGATCAGCG 57.348 33.333 17.50 0.00 43.41 5.18 R
3873 4446 1.318576 CTGTTTCTTGGTTCCGCCTT 58.681 50.000 0.00 0.00 38.35 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.678336 GGCCCAATTGTAGAAGAGAACG 59.322 50.000 4.43 0.00 0.00 3.95
22 23 3.596214 GCCCAATTGTAGAAGAGAACGA 58.404 45.455 4.43 0.00 0.00 3.85
23 24 3.371285 GCCCAATTGTAGAAGAGAACGAC 59.629 47.826 4.43 0.00 0.00 4.34
24 25 3.933332 CCCAATTGTAGAAGAGAACGACC 59.067 47.826 4.43 0.00 0.00 4.79
25 26 4.322801 CCCAATTGTAGAAGAGAACGACCT 60.323 45.833 4.43 0.00 0.00 3.85
26 27 4.627467 CCAATTGTAGAAGAGAACGACCTG 59.373 45.833 4.43 0.00 0.00 4.00
27 28 3.936372 TTGTAGAAGAGAACGACCTGG 57.064 47.619 0.00 0.00 0.00 4.45
28 29 2.168496 TGTAGAAGAGAACGACCTGGG 58.832 52.381 0.00 0.00 0.00 4.45
29 30 2.169330 GTAGAAGAGAACGACCTGGGT 58.831 52.381 0.00 0.00 0.00 4.51
30 31 1.718280 AGAAGAGAACGACCTGGGTT 58.282 50.000 0.00 0.00 0.00 4.11
31 32 1.619332 AGAAGAGAACGACCTGGGTTC 59.381 52.381 7.51 7.51 43.15 3.62
32 33 0.685660 AAGAGAACGACCTGGGTTCC 59.314 55.000 10.91 4.91 43.70 3.62
33 34 0.178929 AGAGAACGACCTGGGTTCCT 60.179 55.000 10.91 6.61 43.70 3.36
34 35 0.037232 GAGAACGACCTGGGTTCCTG 60.037 60.000 10.91 0.00 43.70 3.86
35 36 1.003718 GAACGACCTGGGTTCCTGG 60.004 63.158 8.11 8.11 46.30 4.45
36 37 3.192103 AACGACCTGGGTTCCTGGC 62.192 63.158 9.38 3.01 45.01 4.85
37 38 4.410400 CGACCTGGGTTCCTGGCC 62.410 72.222 9.38 0.00 45.01 5.36
38 39 4.410400 GACCTGGGTTCCTGGCCG 62.410 72.222 9.38 0.00 45.01 6.13
41 42 3.966543 CTGGGTTCCTGGCCGGTT 61.967 66.667 11.58 0.00 0.00 4.44
42 43 3.503839 TGGGTTCCTGGCCGGTTT 61.504 61.111 11.58 0.00 0.00 3.27
43 44 2.675423 GGGTTCCTGGCCGGTTTC 60.675 66.667 11.58 0.00 0.00 2.78
44 45 3.053896 GGTTCCTGGCCGGTTTCG 61.054 66.667 11.58 0.00 0.00 3.46
54 55 3.562635 CGGTTTCGGCTTCCTGAC 58.437 61.111 0.00 0.00 0.00 3.51
55 56 1.004918 CGGTTTCGGCTTCCTGACT 60.005 57.895 0.00 0.00 0.00 3.41
56 57 0.602905 CGGTTTCGGCTTCCTGACTT 60.603 55.000 0.00 0.00 0.00 3.01
57 58 0.875059 GGTTTCGGCTTCCTGACTTG 59.125 55.000 0.00 0.00 0.00 3.16
58 59 0.875059 GTTTCGGCTTCCTGACTTGG 59.125 55.000 0.00 0.00 0.00 3.61
59 60 0.250727 TTTCGGCTTCCTGACTTGGG 60.251 55.000 0.00 0.00 0.00 4.12
60 61 1.415672 TTCGGCTTCCTGACTTGGGT 61.416 55.000 0.00 0.00 0.00 4.51
61 62 1.376037 CGGCTTCCTGACTTGGGTC 60.376 63.158 0.00 0.00 42.42 4.46
62 63 1.002011 GGCTTCCTGACTTGGGTCC 60.002 63.158 0.00 0.00 41.47 4.46
63 64 1.492993 GGCTTCCTGACTTGGGTCCT 61.493 60.000 0.00 0.00 41.47 3.85
64 65 0.402121 GCTTCCTGACTTGGGTCCTT 59.598 55.000 0.00 0.00 41.47 3.36
65 66 1.202940 GCTTCCTGACTTGGGTCCTTT 60.203 52.381 0.00 0.00 41.47 3.11
66 67 2.784347 CTTCCTGACTTGGGTCCTTTC 58.216 52.381 0.00 0.00 41.47 2.62
67 68 2.118403 TCCTGACTTGGGTCCTTTCT 57.882 50.000 0.00 0.00 41.47 2.52
68 69 3.269592 TCCTGACTTGGGTCCTTTCTA 57.730 47.619 0.00 0.00 41.47 2.10
69 70 3.803340 TCCTGACTTGGGTCCTTTCTAT 58.197 45.455 0.00 0.00 41.47 1.98
70 71 4.175962 TCCTGACTTGGGTCCTTTCTATT 58.824 43.478 0.00 0.00 41.47 1.73
71 72 4.019321 TCCTGACTTGGGTCCTTTCTATTG 60.019 45.833 0.00 0.00 41.47 1.90
72 73 4.263506 CCTGACTTGGGTCCTTTCTATTGT 60.264 45.833 0.00 0.00 41.47 2.71
73 74 5.316987 CTGACTTGGGTCCTTTCTATTGTT 58.683 41.667 0.00 0.00 41.47 2.83
74 75 5.701224 TGACTTGGGTCCTTTCTATTGTTT 58.299 37.500 0.00 0.00 41.47 2.83
75 76 5.768164 TGACTTGGGTCCTTTCTATTGTTTC 59.232 40.000 0.00 0.00 41.47 2.78
76 77 5.953571 ACTTGGGTCCTTTCTATTGTTTCT 58.046 37.500 0.00 0.00 0.00 2.52
77 78 6.004574 ACTTGGGTCCTTTCTATTGTTTCTC 58.995 40.000 0.00 0.00 0.00 2.87
78 79 5.843019 TGGGTCCTTTCTATTGTTTCTCT 57.157 39.130 0.00 0.00 0.00 3.10
79 80 5.805728 TGGGTCCTTTCTATTGTTTCTCTC 58.194 41.667 0.00 0.00 0.00 3.20
80 81 5.309543 TGGGTCCTTTCTATTGTTTCTCTCA 59.690 40.000 0.00 0.00 0.00 3.27
81 82 5.644206 GGGTCCTTTCTATTGTTTCTCTCAC 59.356 44.000 0.00 0.00 0.00 3.51
82 83 6.468543 GGTCCTTTCTATTGTTTCTCTCACT 58.531 40.000 0.00 0.00 0.00 3.41
83 84 6.937465 GGTCCTTTCTATTGTTTCTCTCACTT 59.063 38.462 0.00 0.00 0.00 3.16
84 85 7.095017 GGTCCTTTCTATTGTTTCTCTCACTTG 60.095 40.741 0.00 0.00 0.00 3.16
85 86 7.442666 GTCCTTTCTATTGTTTCTCTCACTTGT 59.557 37.037 0.00 0.00 0.00 3.16
86 87 7.442364 TCCTTTCTATTGTTTCTCTCACTTGTG 59.558 37.037 0.00 0.00 0.00 3.33
87 88 7.227512 CCTTTCTATTGTTTCTCTCACTTGTGT 59.772 37.037 0.46 0.00 0.00 3.72
88 89 8.506168 TTTCTATTGTTTCTCTCACTTGTGTT 57.494 30.769 0.46 0.00 0.00 3.32
89 90 8.506168 TTCTATTGTTTCTCTCACTTGTGTTT 57.494 30.769 0.46 0.00 0.00 2.83
90 91 8.506168 TCTATTGTTTCTCTCACTTGTGTTTT 57.494 30.769 0.46 0.00 0.00 2.43
91 92 8.612619 TCTATTGTTTCTCTCACTTGTGTTTTC 58.387 33.333 0.46 0.00 0.00 2.29
92 93 6.567687 TTGTTTCTCTCACTTGTGTTTTCA 57.432 33.333 0.46 0.00 0.00 2.69
93 94 6.182039 TGTTTCTCTCACTTGTGTTTTCAG 57.818 37.500 0.46 0.00 0.00 3.02
94 95 4.882671 TTCTCTCACTTGTGTTTTCAGC 57.117 40.909 0.46 0.00 0.00 4.26
95 96 3.206150 TCTCTCACTTGTGTTTTCAGCC 58.794 45.455 0.46 0.00 0.00 4.85
96 97 3.118261 TCTCTCACTTGTGTTTTCAGCCT 60.118 43.478 0.46 0.00 0.00 4.58
97 98 3.620488 TCTCACTTGTGTTTTCAGCCTT 58.380 40.909 0.46 0.00 0.00 4.35
98 99 4.016444 TCTCACTTGTGTTTTCAGCCTTT 58.984 39.130 0.46 0.00 0.00 3.11
99 100 4.462483 TCTCACTTGTGTTTTCAGCCTTTT 59.538 37.500 0.46 0.00 0.00 2.27
100 101 4.743493 TCACTTGTGTTTTCAGCCTTTTC 58.257 39.130 0.46 0.00 0.00 2.29
101 102 3.547468 CACTTGTGTTTTCAGCCTTTTCG 59.453 43.478 0.00 0.00 0.00 3.46
102 103 3.442273 ACTTGTGTTTTCAGCCTTTTCGA 59.558 39.130 0.00 0.00 0.00 3.71
103 104 4.097892 ACTTGTGTTTTCAGCCTTTTCGAT 59.902 37.500 0.00 0.00 0.00 3.59
104 105 4.647424 TGTGTTTTCAGCCTTTTCGATT 57.353 36.364 0.00 0.00 0.00 3.34
105 106 5.004922 TGTGTTTTCAGCCTTTTCGATTT 57.995 34.783 0.00 0.00 0.00 2.17
106 107 5.415221 TGTGTTTTCAGCCTTTTCGATTTT 58.585 33.333 0.00 0.00 0.00 1.82
107 108 6.565234 TGTGTTTTCAGCCTTTTCGATTTTA 58.435 32.000 0.00 0.00 0.00 1.52
108 109 7.206687 TGTGTTTTCAGCCTTTTCGATTTTAT 58.793 30.769 0.00 0.00 0.00 1.40
109 110 7.168972 TGTGTTTTCAGCCTTTTCGATTTTATG 59.831 33.333 0.00 0.00 0.00 1.90
110 111 7.169140 GTGTTTTCAGCCTTTTCGATTTTATGT 59.831 33.333 0.00 0.00 0.00 2.29
111 112 7.168972 TGTTTTCAGCCTTTTCGATTTTATGTG 59.831 33.333 0.00 0.00 0.00 3.21
112 113 6.567687 TTCAGCCTTTTCGATTTTATGTGA 57.432 33.333 0.00 0.00 0.00 3.58
113 114 6.757897 TCAGCCTTTTCGATTTTATGTGAT 57.242 33.333 0.00 0.00 0.00 3.06
114 115 7.156876 TCAGCCTTTTCGATTTTATGTGATT 57.843 32.000 0.00 0.00 0.00 2.57
115 116 7.601856 TCAGCCTTTTCGATTTTATGTGATTT 58.398 30.769 0.00 0.00 0.00 2.17
116 117 8.087750 TCAGCCTTTTCGATTTTATGTGATTTT 58.912 29.630 0.00 0.00 0.00 1.82
117 118 8.375465 CAGCCTTTTCGATTTTATGTGATTTTC 58.625 33.333 0.00 0.00 0.00 2.29
118 119 8.306761 AGCCTTTTCGATTTTATGTGATTTTCT 58.693 29.630 0.00 0.00 0.00 2.52
119 120 8.925700 GCCTTTTCGATTTTATGTGATTTTCTT 58.074 29.630 0.00 0.00 0.00 2.52
125 126 9.435688 TCGATTTTATGTGATTTTCTTCTCTCA 57.564 29.630 0.00 0.00 0.00 3.27
126 127 9.699985 CGATTTTATGTGATTTTCTTCTCTCAG 57.300 33.333 0.00 0.00 0.00 3.35
132 133 8.688747 ATGTGATTTTCTTCTCTCAGTTTTCT 57.311 30.769 0.00 0.00 0.00 2.52
133 134 8.511604 TGTGATTTTCTTCTCTCAGTTTTCTT 57.488 30.769 0.00 0.00 0.00 2.52
134 135 8.616076 TGTGATTTTCTTCTCTCAGTTTTCTTC 58.384 33.333 0.00 0.00 0.00 2.87
135 136 7.796197 GTGATTTTCTTCTCTCAGTTTTCTTCG 59.204 37.037 0.00 0.00 0.00 3.79
136 137 7.495934 TGATTTTCTTCTCTCAGTTTTCTTCGT 59.504 33.333 0.00 0.00 0.00 3.85
137 138 7.611213 TTTTCTTCTCTCAGTTTTCTTCGTT 57.389 32.000 0.00 0.00 0.00 3.85
138 139 8.712285 TTTTCTTCTCTCAGTTTTCTTCGTTA 57.288 30.769 0.00 0.00 0.00 3.18
139 140 7.695869 TTCTTCTCTCAGTTTTCTTCGTTAC 57.304 36.000 0.00 0.00 0.00 2.50
140 141 7.040473 TCTTCTCTCAGTTTTCTTCGTTACT 57.960 36.000 0.00 0.00 0.00 2.24
141 142 7.490000 TCTTCTCTCAGTTTTCTTCGTTACTT 58.510 34.615 0.00 0.00 0.00 2.24
142 143 7.980099 TCTTCTCTCAGTTTTCTTCGTTACTTT 59.020 33.333 0.00 0.00 0.00 2.66
143 144 8.488651 TTCTCTCAGTTTTCTTCGTTACTTTT 57.511 30.769 0.00 0.00 0.00 2.27
144 145 8.488651 TCTCTCAGTTTTCTTCGTTACTTTTT 57.511 30.769 0.00 0.00 0.00 1.94
258 259 9.835389 TTCAGGAAATTTGATTTCTTTTCATGT 57.165 25.926 11.79 0.00 46.03 3.21
259 260 9.835389 TCAGGAAATTTGATTTCTTTTCATGTT 57.165 25.926 11.79 0.00 46.03 2.71
299 300 9.651913 TCAACTTTTGCTTTAATTTTCAGAACT 57.348 25.926 0.00 0.00 0.00 3.01
300 301 9.693157 CAACTTTTGCTTTAATTTTCAGAACTG 57.307 29.630 0.00 0.00 0.00 3.16
301 302 9.435688 AACTTTTGCTTTAATTTTCAGAACTGT 57.564 25.926 1.73 0.00 0.00 3.55
302 303 9.435688 ACTTTTGCTTTAATTTTCAGAACTGTT 57.564 25.926 0.00 0.00 0.00 3.16
303 304 9.906111 CTTTTGCTTTAATTTTCAGAACTGTTC 57.094 29.630 12.54 12.54 0.00 3.18
304 305 8.994429 TTTGCTTTAATTTTCAGAACTGTTCA 57.006 26.923 21.50 1.79 0.00 3.18
305 306 8.633075 TTGCTTTAATTTTCAGAACTGTTCAG 57.367 30.769 21.50 14.24 0.00 3.02
306 307 7.202526 TGCTTTAATTTTCAGAACTGTTCAGG 58.797 34.615 21.50 13.31 0.00 3.86
307 308 7.068103 TGCTTTAATTTTCAGAACTGTTCAGGA 59.932 33.333 21.50 15.23 0.00 3.86
308 309 7.379797 GCTTTAATTTTCAGAACTGTTCAGGAC 59.620 37.037 21.50 0.00 0.00 3.85
309 310 8.519799 TTTAATTTTCAGAACTGTTCAGGACT 57.480 30.769 21.50 0.00 0.00 3.85
310 311 6.625873 AATTTTCAGAACTGTTCAGGACTC 57.374 37.500 21.50 0.00 0.00 3.36
311 312 4.753516 TTTCAGAACTGTTCAGGACTCA 57.246 40.909 21.50 2.90 0.00 3.41
312 313 4.753516 TTCAGAACTGTTCAGGACTCAA 57.246 40.909 21.50 2.20 0.00 3.02
313 314 4.753516 TCAGAACTGTTCAGGACTCAAA 57.246 40.909 21.50 0.00 0.00 2.69
314 315 5.097742 TCAGAACTGTTCAGGACTCAAAA 57.902 39.130 21.50 0.00 0.00 2.44
315 316 5.496556 TCAGAACTGTTCAGGACTCAAAAA 58.503 37.500 21.50 0.00 0.00 1.94
346 347 9.624697 TTCATAATTTCAGTAAATGTTCACAGC 57.375 29.630 0.00 0.00 35.46 4.40
347 348 9.013229 TCATAATTTCAGTAAATGTTCACAGCT 57.987 29.630 0.00 0.00 35.46 4.24
348 349 9.630098 CATAATTTCAGTAAATGTTCACAGCTT 57.370 29.630 0.00 0.00 35.46 3.74
349 350 9.846248 ATAATTTCAGTAAATGTTCACAGCTTC 57.154 29.630 0.00 0.00 35.46 3.86
350 351 6.691754 TTTCAGTAAATGTTCACAGCTTCA 57.308 33.333 0.00 0.00 0.00 3.02
351 352 6.691754 TTCAGTAAATGTTCACAGCTTCAA 57.308 33.333 0.00 0.00 0.00 2.69
352 353 6.691754 TCAGTAAATGTTCACAGCTTCAAA 57.308 33.333 0.00 0.00 0.00 2.69
353 354 7.094508 TCAGTAAATGTTCACAGCTTCAAAA 57.905 32.000 0.00 0.00 0.00 2.44
354 355 7.542890 TCAGTAAATGTTCACAGCTTCAAAAA 58.457 30.769 0.00 0.00 0.00 1.94
355 356 7.701924 TCAGTAAATGTTCACAGCTTCAAAAAG 59.298 33.333 0.00 0.00 35.47 2.27
356 357 7.489113 CAGTAAATGTTCACAGCTTCAAAAAGT 59.511 33.333 0.00 0.00 34.79 2.66
357 358 8.682710 AGTAAATGTTCACAGCTTCAAAAAGTA 58.317 29.630 0.00 0.00 34.79 2.24
358 359 9.463443 GTAAATGTTCACAGCTTCAAAAAGTAT 57.537 29.630 0.00 0.00 34.79 2.12
359 360 8.947055 AAATGTTCACAGCTTCAAAAAGTATT 57.053 26.923 0.00 0.00 34.79 1.89
360 361 8.579682 AATGTTCACAGCTTCAAAAAGTATTC 57.420 30.769 0.00 0.00 34.79 1.75
361 362 6.503524 TGTTCACAGCTTCAAAAAGTATTCC 58.496 36.000 0.00 0.00 34.79 3.01
362 363 5.356882 TCACAGCTTCAAAAAGTATTCCG 57.643 39.130 0.00 0.00 34.79 4.30
363 364 5.060506 TCACAGCTTCAAAAAGTATTCCGA 58.939 37.500 0.00 0.00 34.79 4.55
364 365 5.529430 TCACAGCTTCAAAAAGTATTCCGAA 59.471 36.000 0.00 0.00 34.79 4.30
365 366 6.206634 TCACAGCTTCAAAAAGTATTCCGAAT 59.793 34.615 0.00 0.00 34.79 3.34
366 367 6.863126 CACAGCTTCAAAAAGTATTCCGAATT 59.137 34.615 0.00 0.00 34.79 2.17
367 368 7.061094 CACAGCTTCAAAAAGTATTCCGAATTC 59.939 37.037 0.00 0.00 34.79 2.17
368 369 6.528072 CAGCTTCAAAAAGTATTCCGAATTCC 59.472 38.462 0.00 0.00 34.79 3.01
369 370 6.208599 AGCTTCAAAAAGTATTCCGAATTCCA 59.791 34.615 0.00 0.00 34.79 3.53
370 371 6.866248 GCTTCAAAAAGTATTCCGAATTCCAA 59.134 34.615 0.00 0.00 34.79 3.53
371 372 7.383843 GCTTCAAAAAGTATTCCGAATTCCAAA 59.616 33.333 0.00 0.00 34.79 3.28
372 373 9.255304 CTTCAAAAAGTATTCCGAATTCCAAAA 57.745 29.630 0.00 0.00 0.00 2.44
373 374 9.771534 TTCAAAAAGTATTCCGAATTCCAAAAT 57.228 25.926 0.00 0.41 0.00 1.82
374 375 9.771534 TCAAAAAGTATTCCGAATTCCAAAATT 57.228 25.926 0.00 0.00 37.80 1.82
377 378 9.554395 AAAAGTATTCCGAATTCCAAAATTTGT 57.446 25.926 4.92 0.00 35.21 2.83
378 379 9.554395 AAAGTATTCCGAATTCCAAAATTTGTT 57.446 25.926 4.92 0.00 35.21 2.83
379 380 8.757164 AGTATTCCGAATTCCAAAATTTGTTC 57.243 30.769 4.92 1.80 35.21 3.18
380 381 8.364142 AGTATTCCGAATTCCAAAATTTGTTCA 58.636 29.630 4.92 0.00 35.21 3.18
381 382 8.983724 GTATTCCGAATTCCAAAATTTGTTCAA 58.016 29.630 4.92 0.00 35.21 2.69
382 383 7.849804 TTCCGAATTCCAAAATTTGTTCAAA 57.150 28.000 4.92 0.44 35.21 2.69
383 384 8.443953 TTCCGAATTCCAAAATTTGTTCAAAT 57.556 26.923 4.92 5.12 35.21 2.32
384 385 8.443953 TCCGAATTCCAAAATTTGTTCAAATT 57.556 26.923 15.08 15.08 35.21 1.82
385 386 8.897752 TCCGAATTCCAAAATTTGTTCAAATTT 58.102 25.926 22.46 22.46 42.33 1.82
400 401 8.892887 TGTTCAAATTTTCAAAAATTGTCTGC 57.107 26.923 12.78 5.52 45.16 4.26
401 402 8.509690 TGTTCAAATTTTCAAAAATTGTCTGCA 58.490 25.926 12.78 7.41 45.16 4.41
402 403 9.505995 GTTCAAATTTTCAAAAATTGTCTGCAT 57.494 25.926 12.78 0.00 45.16 3.96
490 491 6.787199 TTTGCATTTTCAAAACAAATTCGC 57.213 29.167 0.00 0.00 33.47 4.70
491 492 5.731599 TGCATTTTCAAAACAAATTCGCT 57.268 30.435 0.00 0.00 0.00 4.93
492 493 6.116680 TGCATTTTCAAAACAAATTCGCTT 57.883 29.167 0.00 0.00 0.00 4.68
493 494 7.239166 TGCATTTTCAAAACAAATTCGCTTA 57.761 28.000 0.00 0.00 0.00 3.09
494 495 7.859598 TGCATTTTCAAAACAAATTCGCTTAT 58.140 26.923 0.00 0.00 0.00 1.73
495 496 8.982685 TGCATTTTCAAAACAAATTCGCTTATA 58.017 25.926 0.00 0.00 0.00 0.98
496 497 9.464248 GCATTTTCAAAACAAATTCGCTTATAG 57.536 29.630 0.00 0.00 0.00 1.31
501 502 9.737427 TTCAAAACAAATTCGCTTATAGAAACA 57.263 25.926 0.00 0.00 0.00 2.83
502 503 9.906660 TCAAAACAAATTCGCTTATAGAAACAT 57.093 25.926 0.00 0.00 0.00 2.71
505 506 9.691362 AAACAAATTCGCTTATAGAAACATTGT 57.309 25.926 0.00 0.00 35.99 2.71
506 507 9.691362 AACAAATTCGCTTATAGAAACATTGTT 57.309 25.926 0.00 0.00 37.68 2.83
507 508 9.691362 ACAAATTCGCTTATAGAAACATTGTTT 57.309 25.926 14.42 14.42 33.43 2.83
508 509 9.941991 CAAATTCGCTTATAGAAACATTGTTTG 57.058 29.630 19.03 5.26 0.00 2.93
509 510 7.740519 ATTCGCTTATAGAAACATTGTTTGC 57.259 32.000 19.03 13.24 0.00 3.68
510 511 5.636837 TCGCTTATAGAAACATTGTTTGCC 58.363 37.500 19.03 6.22 0.00 4.52
511 512 5.182190 TCGCTTATAGAAACATTGTTTGCCA 59.818 36.000 19.03 4.78 0.00 4.92
512 513 5.512788 CGCTTATAGAAACATTGTTTGCCAG 59.487 40.000 19.03 8.73 0.00 4.85
513 514 6.389906 GCTTATAGAAACATTGTTTGCCAGT 58.610 36.000 19.03 4.07 0.00 4.00
514 515 6.868339 GCTTATAGAAACATTGTTTGCCAGTT 59.132 34.615 19.03 0.00 0.00 3.16
515 516 7.384932 GCTTATAGAAACATTGTTTGCCAGTTT 59.615 33.333 19.03 0.00 35.33 2.66
516 517 9.260002 CTTATAGAAACATTGTTTGCCAGTTTT 57.740 29.630 19.03 0.00 33.04 2.43
517 518 9.606631 TTATAGAAACATTGTTTGCCAGTTTTT 57.393 25.926 19.03 0.00 33.04 1.94
519 520 7.913674 AGAAACATTGTTTGCCAGTTTTTAA 57.086 28.000 19.03 0.00 33.04 1.52
520 521 8.329203 AGAAACATTGTTTGCCAGTTTTTAAA 57.671 26.923 19.03 0.00 33.04 1.52
521 522 8.955388 AGAAACATTGTTTGCCAGTTTTTAAAT 58.045 25.926 19.03 0.00 33.04 1.40
522 523 9.220635 GAAACATTGTTTGCCAGTTTTTAAATC 57.779 29.630 19.03 0.00 33.04 2.17
523 524 6.942891 ACATTGTTTGCCAGTTTTTAAATCG 58.057 32.000 0.00 0.00 0.00 3.34
524 525 6.758886 ACATTGTTTGCCAGTTTTTAAATCGA 59.241 30.769 0.00 0.00 0.00 3.59
525 526 7.440856 ACATTGTTTGCCAGTTTTTAAATCGAT 59.559 29.630 0.00 0.00 0.00 3.59
526 527 6.761731 TGTTTGCCAGTTTTTAAATCGATG 57.238 33.333 0.00 0.00 0.00 3.84
527 528 5.694006 TGTTTGCCAGTTTTTAAATCGATGG 59.306 36.000 0.00 0.00 0.00 3.51
528 529 5.461032 TTGCCAGTTTTTAAATCGATGGT 57.539 34.783 0.00 0.00 0.00 3.55
529 530 5.461032 TGCCAGTTTTTAAATCGATGGTT 57.539 34.783 0.00 0.00 0.00 3.67
530 531 5.848406 TGCCAGTTTTTAAATCGATGGTTT 58.152 33.333 0.00 0.00 0.00 3.27
531 532 5.694006 TGCCAGTTTTTAAATCGATGGTTTG 59.306 36.000 0.00 0.00 0.00 2.93
532 533 5.923684 GCCAGTTTTTAAATCGATGGTTTGA 59.076 36.000 0.00 0.00 0.00 2.69
533 534 6.422400 GCCAGTTTTTAAATCGATGGTTTGAA 59.578 34.615 0.00 0.00 0.00 2.69
534 535 7.568679 GCCAGTTTTTAAATCGATGGTTTGAAC 60.569 37.037 0.00 0.93 0.00 3.18
543 544 4.633980 GGTTTGAACCGCAAGCTG 57.366 55.556 0.00 0.00 39.66 4.24
544 545 1.661509 GGTTTGAACCGCAAGCTGC 60.662 57.895 0.00 0.00 39.66 5.25
545 546 1.065600 GTTTGAACCGCAAGCTGCA 59.934 52.632 1.02 0.00 45.36 4.41
546 547 0.936297 GTTTGAACCGCAAGCTGCAG 60.936 55.000 10.11 10.11 45.36 4.41
547 548 1.383456 TTTGAACCGCAAGCTGCAGT 61.383 50.000 16.64 0.00 45.36 4.40
548 549 0.533978 TTGAACCGCAAGCTGCAGTA 60.534 50.000 16.64 0.00 45.36 2.74
549 550 0.533978 TGAACCGCAAGCTGCAGTAA 60.534 50.000 16.64 0.00 45.36 2.24
550 551 0.591170 GAACCGCAAGCTGCAGTAAA 59.409 50.000 16.64 0.00 45.36 2.01
551 552 0.310854 AACCGCAAGCTGCAGTAAAC 59.689 50.000 16.64 2.21 45.36 2.01
552 553 1.210155 CCGCAAGCTGCAGTAAACC 59.790 57.895 16.64 0.00 45.36 3.27
553 554 1.154413 CGCAAGCTGCAGTAAACCG 60.154 57.895 16.64 8.40 45.36 4.44
554 555 1.442688 GCAAGCTGCAGTAAACCGC 60.443 57.895 16.64 6.28 44.26 5.68
555 556 1.154413 CAAGCTGCAGTAAACCGCG 60.154 57.895 16.64 0.00 0.00 6.46
556 557 1.301401 AAGCTGCAGTAAACCGCGA 60.301 52.632 16.64 0.00 0.00 5.87
557 558 1.566018 AAGCTGCAGTAAACCGCGAC 61.566 55.000 16.64 0.00 0.00 5.19
558 559 2.314647 GCTGCAGTAAACCGCGACA 61.315 57.895 16.64 0.00 0.00 4.35
559 560 1.781555 CTGCAGTAAACCGCGACAG 59.218 57.895 8.23 0.00 0.00 3.51
560 561 0.944311 CTGCAGTAAACCGCGACAGT 60.944 55.000 8.23 0.00 0.00 3.55
561 562 0.314618 TGCAGTAAACCGCGACAGTA 59.685 50.000 8.23 0.00 0.00 2.74
562 563 1.269673 TGCAGTAAACCGCGACAGTAA 60.270 47.619 8.23 0.00 0.00 2.24
563 564 1.997606 GCAGTAAACCGCGACAGTAAT 59.002 47.619 8.23 0.00 0.00 1.89
564 565 2.222729 GCAGTAAACCGCGACAGTAATG 60.223 50.000 8.23 4.93 0.00 1.90
565 566 3.247442 CAGTAAACCGCGACAGTAATGA 58.753 45.455 8.23 0.00 0.00 2.57
566 567 3.303495 CAGTAAACCGCGACAGTAATGAG 59.697 47.826 8.23 0.00 0.00 2.90
567 568 1.076332 AAACCGCGACAGTAATGAGC 58.924 50.000 8.23 1.09 0.00 4.26
568 569 0.739813 AACCGCGACAGTAATGAGCC 60.740 55.000 8.23 0.00 0.00 4.70
569 570 2.230940 CCGCGACAGTAATGAGCCG 61.231 63.158 8.23 0.00 0.00 5.52
570 571 2.230940 CGCGACAGTAATGAGCCGG 61.231 63.158 0.00 0.00 0.00 6.13
571 572 2.526120 GCGACAGTAATGAGCCGGC 61.526 63.158 21.89 21.89 0.00 6.13
572 573 1.883084 CGACAGTAATGAGCCGGCC 60.883 63.158 26.15 15.80 0.00 6.13
573 574 1.220749 GACAGTAATGAGCCGGCCA 59.779 57.895 26.15 21.45 0.00 5.36
574 575 0.811616 GACAGTAATGAGCCGGCCAG 60.812 60.000 26.15 10.82 0.00 4.85
575 576 1.221840 CAGTAATGAGCCGGCCAGT 59.778 57.895 26.15 21.83 0.00 4.00
576 577 0.811616 CAGTAATGAGCCGGCCAGTC 60.812 60.000 26.15 15.68 0.00 3.51
577 578 1.220749 GTAATGAGCCGGCCAGTCA 59.779 57.895 26.15 21.51 0.00 3.41
578 579 0.811616 GTAATGAGCCGGCCAGTCAG 60.812 60.000 26.15 0.00 0.00 3.51
579 580 1.971505 TAATGAGCCGGCCAGTCAGG 61.972 60.000 26.15 0.00 41.84 3.86
605 606 4.444838 TGGGTCGCACGCGCTATT 62.445 61.111 5.73 0.00 39.59 1.73
606 607 3.925238 GGGTCGCACGCGCTATTG 61.925 66.667 5.73 0.00 39.59 1.90
607 608 3.925238 GGTCGCACGCGCTATTGG 61.925 66.667 5.73 0.00 39.59 3.16
608 609 3.186047 GTCGCACGCGCTATTGGT 61.186 61.111 5.73 0.00 39.59 3.67
609 610 2.883730 TCGCACGCGCTATTGGTC 60.884 61.111 5.73 0.00 39.59 4.02
610 611 4.265630 CGCACGCGCTATTGGTCG 62.266 66.667 5.73 0.00 35.30 4.79
611 612 4.575245 GCACGCGCTATTGGTCGC 62.575 66.667 5.73 0.00 46.98 5.19
618 619 0.041839 CGCTATTGGTCGCATTGAGC 60.042 55.000 0.00 0.00 45.46 4.26
631 632 1.661341 ATTGAGCGTCCAATGAGAGC 58.339 50.000 4.10 0.00 35.60 4.09
632 633 0.391661 TTGAGCGTCCAATGAGAGCC 60.392 55.000 0.00 0.00 0.00 4.70
633 634 1.522580 GAGCGTCCAATGAGAGCCC 60.523 63.158 0.00 0.00 0.00 5.19
634 635 2.514824 GCGTCCAATGAGAGCCCC 60.515 66.667 0.00 0.00 0.00 5.80
635 636 2.190578 CGTCCAATGAGAGCCCCC 59.809 66.667 0.00 0.00 0.00 5.40
636 637 2.669133 CGTCCAATGAGAGCCCCCA 61.669 63.158 0.00 0.00 0.00 4.96
637 638 1.077429 GTCCAATGAGAGCCCCCAC 60.077 63.158 0.00 0.00 0.00 4.61
638 639 1.541118 TCCAATGAGAGCCCCCACA 60.541 57.895 0.00 0.00 0.00 4.17
639 640 0.920763 TCCAATGAGAGCCCCCACAT 60.921 55.000 0.00 0.00 0.00 3.21
640 641 0.846015 CCAATGAGAGCCCCCACATA 59.154 55.000 0.00 0.00 0.00 2.29
641 642 1.202855 CCAATGAGAGCCCCCACATAG 60.203 57.143 0.00 0.00 0.00 2.23
642 643 0.475906 AATGAGAGCCCCCACATAGC 59.524 55.000 0.00 0.00 0.00 2.97
643 644 0.695462 ATGAGAGCCCCCACATAGCA 60.695 55.000 0.00 0.00 0.00 3.49
644 645 1.340399 TGAGAGCCCCCACATAGCAG 61.340 60.000 0.00 0.00 0.00 4.24
645 646 2.203266 GAGCCCCCACATAGCAGC 60.203 66.667 0.00 0.00 0.00 5.25
646 647 3.016971 AGCCCCCACATAGCAGCA 61.017 61.111 0.00 0.00 0.00 4.41
647 648 2.044053 GCCCCCACATAGCAGCAA 60.044 61.111 0.00 0.00 0.00 3.91
648 649 1.682005 GCCCCCACATAGCAGCAAA 60.682 57.895 0.00 0.00 0.00 3.68
649 650 1.948721 GCCCCCACATAGCAGCAAAC 61.949 60.000 0.00 0.00 0.00 2.93
650 651 1.322538 CCCCCACATAGCAGCAAACC 61.323 60.000 0.00 0.00 0.00 3.27
651 652 1.322538 CCCCACATAGCAGCAAACCC 61.323 60.000 0.00 0.00 0.00 4.11
652 653 1.322538 CCCACATAGCAGCAAACCCC 61.323 60.000 0.00 0.00 0.00 4.95
653 654 1.656818 CCACATAGCAGCAAACCCCG 61.657 60.000 0.00 0.00 0.00 5.73
654 655 1.378514 ACATAGCAGCAAACCCCGG 60.379 57.895 0.00 0.00 0.00 5.73
655 656 2.120909 CATAGCAGCAAACCCCGGG 61.121 63.158 15.80 15.80 0.00 5.73
714 722 4.199432 ACAGTCAGCAGGTTTATCTCAG 57.801 45.455 0.00 0.00 0.00 3.35
864 872 7.070198 TCTGGTATAGTTATTTGGTTCCATCGA 59.930 37.037 0.00 0.00 0.00 3.59
877 885 4.155733 ATCGATGGCCGGCGTTCA 62.156 61.111 22.54 13.93 39.14 3.18
950 963 2.031120 CATCTTCCTTCGCCTCTCTCT 58.969 52.381 0.00 0.00 0.00 3.10
951 964 1.757682 TCTTCCTTCGCCTCTCTCTC 58.242 55.000 0.00 0.00 0.00 3.20
952 965 1.283613 TCTTCCTTCGCCTCTCTCTCT 59.716 52.381 0.00 0.00 0.00 3.10
953 966 1.676006 CTTCCTTCGCCTCTCTCTCTC 59.324 57.143 0.00 0.00 0.00 3.20
954 967 0.916086 TCCTTCGCCTCTCTCTCTCT 59.084 55.000 0.00 0.00 0.00 3.10
955 968 1.134220 TCCTTCGCCTCTCTCTCTCTC 60.134 57.143 0.00 0.00 0.00 3.20
956 969 1.134098 CCTTCGCCTCTCTCTCTCTCT 60.134 57.143 0.00 0.00 0.00 3.10
980 993 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1090 1110 7.418712 CGGTTCCTATTCCTCCTTATTACTTGT 60.419 40.741 0.00 0.00 0.00 3.16
1320 1352 4.303086 AGTAATCGGTCATACGTCCAAG 57.697 45.455 0.00 0.00 34.94 3.61
1523 1600 7.309770 ACTTCTTCAAAGAGGTCTGTTATCT 57.690 36.000 1.99 0.00 40.86 1.98
1528 1605 4.997395 TCAAAGAGGTCTGTTATCTGTTGC 59.003 41.667 0.00 0.00 0.00 4.17
1552 1640 4.789802 GCAGCCAGAAGACAGTTTGTTTAC 60.790 45.833 0.00 0.00 0.00 2.01
1575 1663 4.976731 CCTGTAGAAAATCATCGTCCTACG 59.023 45.833 0.00 0.00 44.19 3.51
1589 1677 5.942872 TCGTCCTACGTTCTTAAAGTAAGG 58.057 41.667 0.00 0.00 43.14 2.69
1592 1680 5.347093 GTCCTACGTTCTTAAAGTAAGGTGC 59.653 44.000 0.00 0.00 36.45 5.01
1594 1682 4.347360 ACGTTCTTAAAGTAAGGTGCCT 57.653 40.909 0.00 0.00 36.45 4.75
1595 1683 4.711399 ACGTTCTTAAAGTAAGGTGCCTT 58.289 39.130 8.65 8.65 39.83 4.35
1596 1684 4.514066 ACGTTCTTAAAGTAAGGTGCCTTG 59.486 41.667 13.34 0.00 37.47 3.61
1597 1685 4.753107 CGTTCTTAAAGTAAGGTGCCTTGA 59.247 41.667 13.34 0.00 37.47 3.02
1598 1686 5.411669 CGTTCTTAAAGTAAGGTGCCTTGAT 59.588 40.000 13.34 0.00 37.47 2.57
1599 1687 6.072673 CGTTCTTAAAGTAAGGTGCCTTGATT 60.073 38.462 13.34 7.97 37.47 2.57
1600 1688 7.521585 CGTTCTTAAAGTAAGGTGCCTTGATTT 60.522 37.037 13.34 14.33 37.47 2.17
1605 1693 6.670695 AAGTAAGGTGCCTTGATTTTGATT 57.329 33.333 13.34 0.00 37.47 2.57
1617 1705 7.872483 GCCTTGATTTTGATTTAGGTCAAAGAA 59.128 33.333 2.80 0.00 45.67 2.52
1808 1898 1.504275 ATTCCCACCTGCAGGAAGCT 61.504 55.000 39.19 14.42 45.09 3.74
1861 1951 5.452356 CCTCTGCAATGAAAGGTTTGAAGTT 60.452 40.000 0.00 0.00 31.51 2.66
1876 1966 7.342026 AGGTTTGAAGTTCATCCTTTACTTGTT 59.658 33.333 18.55 1.49 32.58 2.83
1877 1967 7.979537 GGTTTGAAGTTCATCCTTTACTTGTTT 59.020 33.333 6.36 0.00 32.58 2.83
1878 1968 8.807581 GTTTGAAGTTCATCCTTTACTTGTTTG 58.192 33.333 6.36 0.00 32.58 2.93
1879 1969 7.639113 TGAAGTTCATCCTTTACTTGTTTGT 57.361 32.000 0.08 0.00 32.58 2.83
1880 1970 8.740123 TGAAGTTCATCCTTTACTTGTTTGTA 57.260 30.769 0.08 0.00 32.58 2.41
1914 2168 4.481368 TTCTGAGTGGTAATGCGGTAAT 57.519 40.909 0.00 0.00 0.00 1.89
1921 2175 7.672240 TGAGTGGTAATGCGGTAATGATATAA 58.328 34.615 0.00 0.00 0.00 0.98
1923 2177 7.676947 AGTGGTAATGCGGTAATGATATAAGT 58.323 34.615 0.00 0.00 0.00 2.24
1926 2180 6.315393 GGTAATGCGGTAATGATATAAGTGGG 59.685 42.308 0.00 0.00 0.00 4.61
1927 2181 5.755409 ATGCGGTAATGATATAAGTGGGA 57.245 39.130 0.00 0.00 0.00 4.37
1933 2187 6.073980 CGGTAATGATATAAGTGGGACGTTTG 60.074 42.308 0.00 0.00 0.00 2.93
2072 2327 8.709308 ACTGATATTAACCTTCTAGTTCAGCAT 58.291 33.333 0.00 0.00 0.00 3.79
2239 2494 7.399634 TCCGTCCCTTTCTTGAGTAAATTTAT 58.600 34.615 0.31 0.00 0.00 1.40
2240 2495 8.542080 TCCGTCCCTTTCTTGAGTAAATTTATA 58.458 33.333 0.31 0.00 0.00 0.98
2241 2496 8.827677 CCGTCCCTTTCTTGAGTAAATTTATAG 58.172 37.037 0.31 0.00 0.00 1.31
2242 2497 9.379791 CGTCCCTTTCTTGAGTAAATTTATAGT 57.620 33.333 0.31 0.00 0.00 2.12
2259 2514 7.884816 TTTATAGTAATAATCGACAGCAGGC 57.115 36.000 0.00 0.00 0.00 4.85
2264 2519 5.768662 AGTAATAATCGACAGCAGGCTAGTA 59.231 40.000 0.00 0.00 0.00 1.82
2276 2531 9.141400 GACAGCAGGCTAGTACATATAAATAAC 57.859 37.037 0.00 0.00 0.00 1.89
2293 2665 0.764890 AACTGCTTGGTGCTAGGACA 59.235 50.000 16.81 0.00 43.37 4.02
2311 2683 0.892755 CAGCGGACCTGTACCAGTTA 59.107 55.000 0.00 0.00 36.79 2.24
2314 2686 2.028385 AGCGGACCTGTACCAGTTAAAG 60.028 50.000 0.00 0.00 0.00 1.85
2321 2734 6.435292 ACCTGTACCAGTTAAAGAATGAGT 57.565 37.500 0.00 0.00 0.00 3.41
2346 2759 8.915654 GTTAGTCCAAAATCATTTTAAGCTGTG 58.084 33.333 0.00 0.00 0.00 3.66
2350 2763 6.493115 TCCAAAATCATTTTAAGCTGTGAGGA 59.507 34.615 0.00 0.00 0.00 3.71
2470 2883 5.070001 AGAATGAACGATTTCCAGGTTTGA 58.930 37.500 0.00 0.00 0.00 2.69
2472 2885 4.764679 TGAACGATTTCCAGGTTTGATG 57.235 40.909 0.00 0.00 0.00 3.07
2486 2899 6.169094 CAGGTTTGATGATCTAACTCACTGT 58.831 40.000 16.83 0.00 33.65 3.55
2497 2910 5.080337 TCTAACTCACTGTCCATCTTCTGT 58.920 41.667 0.00 0.00 0.00 3.41
2540 2953 8.517878 AGCATGCACTATATTAATCCACATTTC 58.482 33.333 21.98 0.00 0.00 2.17
2642 3055 7.201299 GCTTTATTCTTAATGCATTATGCTCGC 60.201 37.037 19.51 13.49 45.31 5.03
2667 3080 9.159470 GCGCTGATCTATAATTTCAGTTTAAAC 57.841 33.333 10.47 10.47 39.24 2.01
2751 3165 1.690893 TGATGAGGTGAGGATGCTAGC 59.309 52.381 8.10 8.10 0.00 3.42
2756 3170 0.972883 GGTGAGGATGCTAGCCCTAG 59.027 60.000 13.29 0.00 36.29 3.02
2878 3293 1.474478 AGCGAGCAGATCTTCGAGAAA 59.526 47.619 18.67 0.00 0.00 2.52
2896 3311 4.082125 AGAAAGCAATTCAAGGAATCGGT 58.918 39.130 5.24 0.00 40.72 4.69
2913 3328 0.539986 GGTCGAGGGCAGGTTGATTA 59.460 55.000 0.00 0.00 0.00 1.75
2925 3340 6.239036 GGGCAGGTTGATTATGGTTTATTCTC 60.239 42.308 0.00 0.00 0.00 2.87
2973 3388 3.688185 CCTCATGTTGTTGAGTCTGATGG 59.312 47.826 0.00 0.00 41.30 3.51
2974 3389 3.678289 TCATGTTGTTGAGTCTGATGGG 58.322 45.455 0.00 0.00 0.00 4.00
3112 3528 4.415596 ACAGGTAATTTTGGGAGATTGCA 58.584 39.130 0.00 0.00 0.00 4.08
3113 3529 4.463891 ACAGGTAATTTTGGGAGATTGCAG 59.536 41.667 0.00 0.00 0.00 4.41
3120 3536 0.776810 TGGGAGATTGCAGGTTTCCA 59.223 50.000 11.30 5.00 0.00 3.53
3201 3761 4.918583 TCAAGTGTTTGTCGTTTTGTTTCC 59.081 37.500 0.00 0.00 35.73 3.13
3209 3769 4.796369 TGTCGTTTTGTTTCCGTTTCTTT 58.204 34.783 0.00 0.00 0.00 2.52
3234 3794 6.094061 GGTCTGATGTACTGTCTTCACTTAC 58.906 44.000 0.00 0.00 0.00 2.34
3240 3800 9.639601 TGATGTACTGTCTTCACTTACAATTAG 57.360 33.333 0.00 0.00 30.20 1.73
3279 3839 4.537015 GTCCAAAATCAAGACTTCAACCG 58.463 43.478 0.00 0.00 0.00 4.44
3315 3875 7.689812 CGATTTCACATGTTCTTGTTCATAGTC 59.310 37.037 0.00 0.00 0.00 2.59
3316 3876 8.627208 ATTTCACATGTTCTTGTTCATAGTCT 57.373 30.769 0.00 0.00 0.00 3.24
3317 3877 7.425577 TTCACATGTTCTTGTTCATAGTCTG 57.574 36.000 0.00 0.00 0.00 3.51
3318 3878 6.524734 TCACATGTTCTTGTTCATAGTCTGT 58.475 36.000 0.00 0.00 0.00 3.41
3400 3960 4.142609 TGCACAAGGAGAGATATTGGAC 57.857 45.455 0.00 0.00 0.00 4.02
3511 4074 1.094650 TGCTGCTGCGTTTCAACTCA 61.095 50.000 11.21 0.00 43.34 3.41
3649 4212 1.299089 CGCGGTGATCATCGTGCTA 60.299 57.895 27.10 0.00 38.65 3.49
3832 4405 9.460906 GTACTTAGTTACAGTGATACTTATGGC 57.539 37.037 0.00 0.00 0.00 4.40
3838 4411 8.759782 AGTTACAGTGATACTTATGGCTAAGTT 58.240 33.333 12.42 4.19 44.07 2.66
3865 4438 3.932545 TGGCATGCGACAGTTTTTAAT 57.067 38.095 12.44 0.00 0.00 1.40
3872 4445 8.076178 GGCATGCGACAGTTTTTAATTCTATAT 58.924 33.333 12.44 0.00 0.00 0.86
3877 4450 9.595357 GCGACAGTTTTTAATTCTATATAAGGC 57.405 33.333 0.00 0.00 0.00 4.35
3976 4550 8.535335 GGAGACTCTTATATTGATGGAAGCATA 58.465 37.037 1.74 0.00 23.87 3.14
3991 4565 5.239306 TGGAAGCATACTTGTTTGAGTTGAG 59.761 40.000 0.00 0.00 35.82 3.02
3992 4566 5.239525 GGAAGCATACTTGTTTGAGTTGAGT 59.760 40.000 0.00 0.00 35.82 3.41
3993 4567 6.238759 GGAAGCATACTTGTTTGAGTTGAGTT 60.239 38.462 0.00 0.00 35.82 3.01
3994 4568 6.064846 AGCATACTTGTTTGAGTTGAGTTG 57.935 37.500 0.00 0.00 0.00 3.16
3995 4569 5.822519 AGCATACTTGTTTGAGTTGAGTTGA 59.177 36.000 0.00 0.00 0.00 3.18
4057 7654 1.067846 TGACGACCTGAAAGACATCGG 60.068 52.381 0.00 0.00 37.74 4.18
4065 7662 3.689161 CCTGAAAGACATCGGCAATACAA 59.311 43.478 0.00 0.00 34.07 2.41
4155 7753 6.748333 ATTCCATGCCAATTATAGTGATCG 57.252 37.500 0.00 0.00 0.00 3.69
4160 7758 6.456047 CCATGCCAATTATAGTGATCGATTCG 60.456 42.308 0.00 0.00 0.00 3.34
4161 7759 5.538118 TGCCAATTATAGTGATCGATTCGT 58.462 37.500 5.89 0.00 0.00 3.85
4162 7760 6.683715 TGCCAATTATAGTGATCGATTCGTA 58.316 36.000 5.89 0.00 0.00 3.43
4163 7761 7.149307 TGCCAATTATAGTGATCGATTCGTAA 58.851 34.615 5.89 2.91 0.00 3.18
4164 7762 7.654116 TGCCAATTATAGTGATCGATTCGTAAA 59.346 33.333 5.89 0.00 0.00 2.01
4195 7793 1.683707 AGAGCTGATGTGCCCTCGA 60.684 57.895 0.00 0.00 0.00 4.04
4313 7916 2.175202 CTACTGCTCTCACTTCCAGGT 58.825 52.381 0.00 0.00 0.00 4.00
4460 8070 6.563422 TGAACAATTGAGACAAAAACTCTGG 58.437 36.000 13.59 0.00 35.66 3.86
4554 8164 0.321671 GCACAGTCTTGAGCACCCTA 59.678 55.000 0.00 0.00 40.18 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.678336 CGTTCTCTTCTACAATTGGGCC 59.322 50.000 10.83 0.00 0.00 5.80
1 2 3.371285 GTCGTTCTCTTCTACAATTGGGC 59.629 47.826 10.83 0.00 0.00 5.36
2 3 3.933332 GGTCGTTCTCTTCTACAATTGGG 59.067 47.826 10.83 2.38 0.00 4.12
3 4 4.627467 CAGGTCGTTCTCTTCTACAATTGG 59.373 45.833 10.83 0.00 0.00 3.16
4 5 4.627467 CCAGGTCGTTCTCTTCTACAATTG 59.373 45.833 3.24 3.24 0.00 2.32
5 6 4.322801 CCCAGGTCGTTCTCTTCTACAATT 60.323 45.833 0.00 0.00 0.00 2.32
6 7 3.195825 CCCAGGTCGTTCTCTTCTACAAT 59.804 47.826 0.00 0.00 0.00 2.71
7 8 2.561419 CCCAGGTCGTTCTCTTCTACAA 59.439 50.000 0.00 0.00 0.00 2.41
8 9 2.168496 CCCAGGTCGTTCTCTTCTACA 58.832 52.381 0.00 0.00 0.00 2.74
9 10 2.169330 ACCCAGGTCGTTCTCTTCTAC 58.831 52.381 0.00 0.00 0.00 2.59
10 11 2.599408 ACCCAGGTCGTTCTCTTCTA 57.401 50.000 0.00 0.00 0.00 2.10
11 12 1.619332 GAACCCAGGTCGTTCTCTTCT 59.381 52.381 2.16 0.00 37.28 2.85
12 13 1.337917 GGAACCCAGGTCGTTCTCTTC 60.338 57.143 8.12 0.00 39.65 2.87
13 14 0.685660 GGAACCCAGGTCGTTCTCTT 59.314 55.000 8.12 0.00 39.65 2.85
14 15 0.178929 AGGAACCCAGGTCGTTCTCT 60.179 55.000 8.12 2.63 39.65 3.10
15 16 0.037232 CAGGAACCCAGGTCGTTCTC 60.037 60.000 8.12 0.80 39.65 2.87
16 17 1.481056 CCAGGAACCCAGGTCGTTCT 61.481 60.000 8.12 0.00 39.65 3.01
17 18 1.003718 CCAGGAACCCAGGTCGTTC 60.004 63.158 0.90 0.90 39.12 3.95
18 19 3.157680 CCAGGAACCCAGGTCGTT 58.842 61.111 0.00 0.00 0.00 3.85
19 20 3.637273 GCCAGGAACCCAGGTCGT 61.637 66.667 0.00 0.00 32.35 4.34
20 21 4.410400 GGCCAGGAACCCAGGTCG 62.410 72.222 0.00 0.00 32.35 4.79
21 22 4.410400 CGGCCAGGAACCCAGGTC 62.410 72.222 2.24 0.00 32.35 3.85
24 25 3.507377 AAACCGGCCAGGAACCCAG 62.507 63.158 18.74 0.00 45.00 4.45
25 26 3.501040 GAAACCGGCCAGGAACCCA 62.501 63.158 18.74 0.00 45.00 4.51
26 27 2.675423 GAAACCGGCCAGGAACCC 60.675 66.667 18.74 3.40 45.00 4.11
27 28 3.053896 CGAAACCGGCCAGGAACC 61.054 66.667 18.74 7.07 45.00 3.62
28 29 3.053896 CCGAAACCGGCCAGGAAC 61.054 66.667 18.74 9.09 45.00 3.62
37 38 0.602905 AAGTCAGGAAGCCGAAACCG 60.603 55.000 0.00 0.00 0.00 4.44
38 39 0.875059 CAAGTCAGGAAGCCGAAACC 59.125 55.000 0.00 0.00 0.00 3.27
39 40 0.875059 CCAAGTCAGGAAGCCGAAAC 59.125 55.000 0.00 0.00 0.00 2.78
40 41 0.250727 CCCAAGTCAGGAAGCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
41 42 1.374947 CCCAAGTCAGGAAGCCGAA 59.625 57.895 0.00 0.00 0.00 4.30
42 43 1.827399 GACCCAAGTCAGGAAGCCGA 61.827 60.000 0.00 0.00 42.99 5.54
43 44 1.376037 GACCCAAGTCAGGAAGCCG 60.376 63.158 0.00 0.00 42.99 5.52
44 45 1.002011 GGACCCAAGTCAGGAAGCC 60.002 63.158 0.00 0.00 45.48 4.35
45 46 0.402121 AAGGACCCAAGTCAGGAAGC 59.598 55.000 0.00 0.00 45.48 3.86
46 47 2.373502 AGAAAGGACCCAAGTCAGGAAG 59.626 50.000 0.00 0.00 45.48 3.46
47 48 2.418669 AGAAAGGACCCAAGTCAGGAA 58.581 47.619 0.00 0.00 45.48 3.36
48 49 2.118403 AGAAAGGACCCAAGTCAGGA 57.882 50.000 0.00 0.00 45.48 3.86
49 50 4.263506 ACAATAGAAAGGACCCAAGTCAGG 60.264 45.833 0.00 0.00 45.48 3.86
50 51 4.911390 ACAATAGAAAGGACCCAAGTCAG 58.089 43.478 0.00 0.00 45.48 3.51
51 52 4.993705 ACAATAGAAAGGACCCAAGTCA 57.006 40.909 0.00 0.00 45.48 3.41
52 53 6.004574 AGAAACAATAGAAAGGACCCAAGTC 58.995 40.000 0.00 0.00 42.73 3.01
53 54 5.953571 AGAAACAATAGAAAGGACCCAAGT 58.046 37.500 0.00 0.00 0.00 3.16
54 55 6.241645 AGAGAAACAATAGAAAGGACCCAAG 58.758 40.000 0.00 0.00 0.00 3.61
55 56 6.183361 TGAGAGAAACAATAGAAAGGACCCAA 60.183 38.462 0.00 0.00 0.00 4.12
56 57 5.309543 TGAGAGAAACAATAGAAAGGACCCA 59.690 40.000 0.00 0.00 0.00 4.51
57 58 5.644206 GTGAGAGAAACAATAGAAAGGACCC 59.356 44.000 0.00 0.00 0.00 4.46
58 59 6.468543 AGTGAGAGAAACAATAGAAAGGACC 58.531 40.000 0.00 0.00 0.00 4.46
59 60 7.442666 ACAAGTGAGAGAAACAATAGAAAGGAC 59.557 37.037 0.00 0.00 0.00 3.85
60 61 7.442364 CACAAGTGAGAGAAACAATAGAAAGGA 59.558 37.037 0.00 0.00 0.00 3.36
61 62 7.227512 ACACAAGTGAGAGAAACAATAGAAAGG 59.772 37.037 7.28 0.00 0.00 3.11
62 63 8.147642 ACACAAGTGAGAGAAACAATAGAAAG 57.852 34.615 7.28 0.00 0.00 2.62
63 64 8.506168 AACACAAGTGAGAGAAACAATAGAAA 57.494 30.769 7.28 0.00 0.00 2.52
64 65 8.506168 AAACACAAGTGAGAGAAACAATAGAA 57.494 30.769 7.28 0.00 0.00 2.10
65 66 8.506168 AAAACACAAGTGAGAGAAACAATAGA 57.494 30.769 7.28 0.00 0.00 1.98
66 67 8.397906 TGAAAACACAAGTGAGAGAAACAATAG 58.602 33.333 7.28 0.00 0.00 1.73
67 68 8.275015 TGAAAACACAAGTGAGAGAAACAATA 57.725 30.769 7.28 0.00 0.00 1.90
68 69 7.156876 TGAAAACACAAGTGAGAGAAACAAT 57.843 32.000 7.28 0.00 0.00 2.71
69 70 6.567687 TGAAAACACAAGTGAGAGAAACAA 57.432 33.333 7.28 0.00 0.00 2.83
70 71 5.391950 GCTGAAAACACAAGTGAGAGAAACA 60.392 40.000 7.28 0.00 0.00 2.83
71 72 5.030936 GCTGAAAACACAAGTGAGAGAAAC 58.969 41.667 7.28 0.00 0.00 2.78
72 73 4.096382 GGCTGAAAACACAAGTGAGAGAAA 59.904 41.667 7.28 0.00 0.00 2.52
73 74 3.627577 GGCTGAAAACACAAGTGAGAGAA 59.372 43.478 7.28 0.00 0.00 2.87
74 75 3.118261 AGGCTGAAAACACAAGTGAGAGA 60.118 43.478 7.28 0.00 0.00 3.10
75 76 3.209410 AGGCTGAAAACACAAGTGAGAG 58.791 45.455 7.28 0.00 0.00 3.20
76 77 3.281727 AGGCTGAAAACACAAGTGAGA 57.718 42.857 7.28 0.00 0.00 3.27
77 78 4.376340 AAAGGCTGAAAACACAAGTGAG 57.624 40.909 7.28 0.00 0.00 3.51
78 79 4.674101 CGAAAAGGCTGAAAACACAAGTGA 60.674 41.667 7.28 0.00 0.00 3.41
79 80 3.547468 CGAAAAGGCTGAAAACACAAGTG 59.453 43.478 0.00 0.00 0.00 3.16
80 81 3.442273 TCGAAAAGGCTGAAAACACAAGT 59.558 39.130 0.00 0.00 0.00 3.16
81 82 4.027572 TCGAAAAGGCTGAAAACACAAG 57.972 40.909 0.00 0.00 0.00 3.16
82 83 4.647424 ATCGAAAAGGCTGAAAACACAA 57.353 36.364 0.00 0.00 0.00 3.33
83 84 4.647424 AATCGAAAAGGCTGAAAACACA 57.353 36.364 0.00 0.00 0.00 3.72
84 85 5.966636 AAAATCGAAAAGGCTGAAAACAC 57.033 34.783 0.00 0.00 0.00 3.32
85 86 7.168972 CACATAAAATCGAAAAGGCTGAAAACA 59.831 33.333 0.00 0.00 0.00 2.83
86 87 7.381139 TCACATAAAATCGAAAAGGCTGAAAAC 59.619 33.333 0.00 0.00 0.00 2.43
87 88 7.429633 TCACATAAAATCGAAAAGGCTGAAAA 58.570 30.769 0.00 0.00 0.00 2.29
88 89 6.976088 TCACATAAAATCGAAAAGGCTGAAA 58.024 32.000 0.00 0.00 0.00 2.69
89 90 6.567687 TCACATAAAATCGAAAAGGCTGAA 57.432 33.333 0.00 0.00 0.00 3.02
90 91 6.757897 ATCACATAAAATCGAAAAGGCTGA 57.242 33.333 0.00 0.00 0.00 4.26
91 92 7.816945 AAATCACATAAAATCGAAAAGGCTG 57.183 32.000 0.00 0.00 0.00 4.85
92 93 8.306761 AGAAAATCACATAAAATCGAAAAGGCT 58.693 29.630 0.00 0.00 0.00 4.58
93 94 8.466086 AGAAAATCACATAAAATCGAAAAGGC 57.534 30.769 0.00 0.00 0.00 4.35
99 100 9.435688 TGAGAGAAGAAAATCACATAAAATCGA 57.564 29.630 0.00 0.00 0.00 3.59
100 101 9.699985 CTGAGAGAAGAAAATCACATAAAATCG 57.300 33.333 0.00 0.00 0.00 3.34
106 107 9.784531 AGAAAACTGAGAGAAGAAAATCACATA 57.215 29.630 0.00 0.00 0.00 2.29
107 108 8.688747 AGAAAACTGAGAGAAGAAAATCACAT 57.311 30.769 0.00 0.00 0.00 3.21
108 109 8.511604 AAGAAAACTGAGAGAAGAAAATCACA 57.488 30.769 0.00 0.00 0.00 3.58
109 110 7.796197 CGAAGAAAACTGAGAGAAGAAAATCAC 59.204 37.037 0.00 0.00 0.00 3.06
110 111 7.495934 ACGAAGAAAACTGAGAGAAGAAAATCA 59.504 33.333 0.00 0.00 0.00 2.57
111 112 7.856556 ACGAAGAAAACTGAGAGAAGAAAATC 58.143 34.615 0.00 0.00 0.00 2.17
112 113 7.793927 ACGAAGAAAACTGAGAGAAGAAAAT 57.206 32.000 0.00 0.00 0.00 1.82
113 114 7.611213 AACGAAGAAAACTGAGAGAAGAAAA 57.389 32.000 0.00 0.00 0.00 2.29
114 115 7.980099 AGTAACGAAGAAAACTGAGAGAAGAAA 59.020 33.333 0.00 0.00 0.00 2.52
115 116 7.490000 AGTAACGAAGAAAACTGAGAGAAGAA 58.510 34.615 0.00 0.00 0.00 2.52
116 117 7.040473 AGTAACGAAGAAAACTGAGAGAAGA 57.960 36.000 0.00 0.00 0.00 2.87
117 118 7.701809 AAGTAACGAAGAAAACTGAGAGAAG 57.298 36.000 0.00 0.00 0.00 2.85
118 119 8.488651 AAAAGTAACGAAGAAAACTGAGAGAA 57.511 30.769 0.00 0.00 0.00 2.87
119 120 8.488651 AAAAAGTAACGAAGAAAACTGAGAGA 57.511 30.769 0.00 0.00 0.00 3.10
273 274 9.651913 AGTTCTGAAAATTAAAGCAAAAGTTGA 57.348 25.926 0.00 0.00 0.00 3.18
274 275 9.693157 CAGTTCTGAAAATTAAAGCAAAAGTTG 57.307 29.630 0.00 0.00 0.00 3.16
275 276 9.435688 ACAGTTCTGAAAATTAAAGCAAAAGTT 57.564 25.926 6.83 0.00 0.00 2.66
276 277 9.435688 AACAGTTCTGAAAATTAAAGCAAAAGT 57.564 25.926 6.83 0.00 0.00 2.66
277 278 9.906111 GAACAGTTCTGAAAATTAAAGCAAAAG 57.094 29.630 6.00 0.00 0.00 2.27
278 279 9.429359 TGAACAGTTCTGAAAATTAAAGCAAAA 57.571 25.926 14.51 0.00 0.00 2.44
279 280 8.994429 TGAACAGTTCTGAAAATTAAAGCAAA 57.006 26.923 14.51 0.00 0.00 3.68
280 281 7.706179 CCTGAACAGTTCTGAAAATTAAAGCAA 59.294 33.333 19.10 0.00 0.00 3.91
281 282 7.068103 TCCTGAACAGTTCTGAAAATTAAAGCA 59.932 33.333 19.10 0.00 0.00 3.91
282 283 7.379797 GTCCTGAACAGTTCTGAAAATTAAAGC 59.620 37.037 19.10 0.00 0.00 3.51
283 284 8.624776 AGTCCTGAACAGTTCTGAAAATTAAAG 58.375 33.333 19.10 3.02 0.00 1.85
284 285 8.519799 AGTCCTGAACAGTTCTGAAAATTAAA 57.480 30.769 19.10 0.00 0.00 1.52
285 286 7.773224 TGAGTCCTGAACAGTTCTGAAAATTAA 59.227 33.333 19.10 0.00 0.00 1.40
286 287 7.279615 TGAGTCCTGAACAGTTCTGAAAATTA 58.720 34.615 19.10 3.50 0.00 1.40
287 288 6.122277 TGAGTCCTGAACAGTTCTGAAAATT 58.878 36.000 19.10 4.09 0.00 1.82
288 289 5.684704 TGAGTCCTGAACAGTTCTGAAAAT 58.315 37.500 19.10 8.06 0.00 1.82
289 290 5.097742 TGAGTCCTGAACAGTTCTGAAAA 57.902 39.130 19.10 4.35 0.00 2.29
290 291 4.753516 TGAGTCCTGAACAGTTCTGAAA 57.246 40.909 19.10 6.47 0.00 2.69
291 292 4.753516 TTGAGTCCTGAACAGTTCTGAA 57.246 40.909 19.10 0.00 0.00 3.02
292 293 4.753516 TTTGAGTCCTGAACAGTTCTGA 57.246 40.909 19.10 10.89 0.00 3.27
293 294 5.818136 TTTTTGAGTCCTGAACAGTTCTG 57.182 39.130 14.51 13.29 0.00 3.02
320 321 9.624697 GCTGTGAACATTTACTGAAATTATGAA 57.375 29.630 0.00 0.00 32.73 2.57
321 322 9.013229 AGCTGTGAACATTTACTGAAATTATGA 57.987 29.630 0.00 0.00 32.73 2.15
322 323 9.630098 AAGCTGTGAACATTTACTGAAATTATG 57.370 29.630 0.00 0.00 32.73 1.90
323 324 9.846248 GAAGCTGTGAACATTTACTGAAATTAT 57.154 29.630 0.00 0.00 32.73 1.28
324 325 8.845227 TGAAGCTGTGAACATTTACTGAAATTA 58.155 29.630 0.00 0.00 32.73 1.40
325 326 7.715657 TGAAGCTGTGAACATTTACTGAAATT 58.284 30.769 0.00 0.00 32.73 1.82
326 327 7.275888 TGAAGCTGTGAACATTTACTGAAAT 57.724 32.000 0.00 0.00 35.56 2.17
327 328 6.691754 TGAAGCTGTGAACATTTACTGAAA 57.308 33.333 0.00 0.00 0.00 2.69
328 329 6.691754 TTGAAGCTGTGAACATTTACTGAA 57.308 33.333 0.00 0.00 0.00 3.02
329 330 6.691754 TTTGAAGCTGTGAACATTTACTGA 57.308 33.333 0.00 0.00 0.00 3.41
330 331 7.489113 ACTTTTTGAAGCTGTGAACATTTACTG 59.511 33.333 0.00 0.00 0.00 2.74
331 332 7.547227 ACTTTTTGAAGCTGTGAACATTTACT 58.453 30.769 0.00 0.00 0.00 2.24
332 333 7.755582 ACTTTTTGAAGCTGTGAACATTTAC 57.244 32.000 0.00 0.00 0.00 2.01
334 335 8.947055 AATACTTTTTGAAGCTGTGAACATTT 57.053 26.923 0.00 0.00 0.00 2.32
335 336 7.653311 GGAATACTTTTTGAAGCTGTGAACATT 59.347 33.333 0.00 0.00 0.00 2.71
336 337 7.147976 GGAATACTTTTTGAAGCTGTGAACAT 58.852 34.615 0.00 0.00 0.00 2.71
337 338 6.503524 GGAATACTTTTTGAAGCTGTGAACA 58.496 36.000 0.00 0.00 0.00 3.18
338 339 5.625311 CGGAATACTTTTTGAAGCTGTGAAC 59.375 40.000 0.00 0.00 0.00 3.18
339 340 5.529430 TCGGAATACTTTTTGAAGCTGTGAA 59.471 36.000 0.00 0.00 0.00 3.18
340 341 5.060506 TCGGAATACTTTTTGAAGCTGTGA 58.939 37.500 0.00 0.00 0.00 3.58
341 342 5.356882 TCGGAATACTTTTTGAAGCTGTG 57.643 39.130 0.00 0.00 0.00 3.66
342 343 6.575162 ATTCGGAATACTTTTTGAAGCTGT 57.425 33.333 0.34 0.00 0.00 4.40
343 344 6.528072 GGAATTCGGAATACTTTTTGAAGCTG 59.472 38.462 3.22 0.00 0.00 4.24
344 345 6.208599 TGGAATTCGGAATACTTTTTGAAGCT 59.791 34.615 3.22 0.00 0.00 3.74
345 346 6.386654 TGGAATTCGGAATACTTTTTGAAGC 58.613 36.000 3.22 0.00 0.00 3.86
346 347 8.810652 TTTGGAATTCGGAATACTTTTTGAAG 57.189 30.769 3.22 0.00 0.00 3.02
347 348 9.771534 ATTTTGGAATTCGGAATACTTTTTGAA 57.228 25.926 3.22 0.00 0.00 2.69
348 349 9.771534 AATTTTGGAATTCGGAATACTTTTTGA 57.228 25.926 3.22 0.00 29.53 2.69
351 352 9.554395 ACAAATTTTGGAATTCGGAATACTTTT 57.446 25.926 13.42 0.00 34.44 2.27
352 353 9.554395 AACAAATTTTGGAATTCGGAATACTTT 57.446 25.926 13.42 0.00 34.44 2.66
353 354 9.203421 GAACAAATTTTGGAATTCGGAATACTT 57.797 29.630 13.42 0.00 34.44 2.24
354 355 8.364142 TGAACAAATTTTGGAATTCGGAATACT 58.636 29.630 13.42 0.00 34.44 2.12
355 356 8.527567 TGAACAAATTTTGGAATTCGGAATAC 57.472 30.769 13.42 1.33 34.44 1.89
356 357 9.547753 TTTGAACAAATTTTGGAATTCGGAATA 57.452 25.926 13.42 0.00 34.44 1.75
357 358 8.443953 TTTGAACAAATTTTGGAATTCGGAAT 57.556 26.923 13.42 0.00 34.44 3.01
358 359 7.849804 TTTGAACAAATTTTGGAATTCGGAA 57.150 28.000 13.42 0.00 34.44 4.30
359 360 8.443953 AATTTGAACAAATTTTGGAATTCGGA 57.556 26.923 16.52 2.60 45.67 4.55
374 375 9.339492 GCAGACAATTTTTGAAAATTTGAACAA 57.661 25.926 23.85 0.00 43.91 2.83
375 376 8.509690 TGCAGACAATTTTTGAAAATTTGAACA 58.490 25.926 23.85 15.39 43.91 3.18
376 377 8.892887 TGCAGACAATTTTTGAAAATTTGAAC 57.107 26.923 23.85 17.95 43.91 3.18
464 465 9.116054 GCGAATTTGTTTTGAAAATGCAAATAT 57.884 25.926 15.22 8.90 38.37 1.28
465 466 8.341173 AGCGAATTTGTTTTGAAAATGCAAATA 58.659 25.926 15.22 0.00 38.37 1.40
466 467 7.194962 AGCGAATTTGTTTTGAAAATGCAAAT 58.805 26.923 11.26 11.26 40.23 2.32
467 468 6.549952 AGCGAATTTGTTTTGAAAATGCAAA 58.450 28.000 8.30 8.30 36.08 3.68
468 469 6.116680 AGCGAATTTGTTTTGAAAATGCAA 57.883 29.167 0.00 0.00 0.00 4.08
469 470 5.731599 AGCGAATTTGTTTTGAAAATGCA 57.268 30.435 0.00 0.00 0.00 3.96
470 471 9.464248 CTATAAGCGAATTTGTTTTGAAAATGC 57.536 29.630 0.00 0.00 0.00 3.56
475 476 9.737427 TGTTTCTATAAGCGAATTTGTTTTGAA 57.263 25.926 0.00 1.75 0.00 2.69
476 477 9.906660 ATGTTTCTATAAGCGAATTTGTTTTGA 57.093 25.926 0.00 0.00 0.00 2.69
479 480 9.691362 ACAATGTTTCTATAAGCGAATTTGTTT 57.309 25.926 0.12 0.12 0.00 2.83
480 481 9.691362 AACAATGTTTCTATAAGCGAATTTGTT 57.309 25.926 0.00 0.00 31.25 2.83
481 482 9.691362 AAACAATGTTTCTATAAGCGAATTTGT 57.309 25.926 5.41 0.00 0.00 2.83
482 483 9.941991 CAAACAATGTTTCTATAAGCGAATTTG 57.058 29.630 8.59 0.00 0.00 2.32
483 484 8.647226 GCAAACAATGTTTCTATAAGCGAATTT 58.353 29.630 8.59 0.00 0.00 1.82
484 485 7.275560 GGCAAACAATGTTTCTATAAGCGAATT 59.724 33.333 8.59 0.00 0.00 2.17
485 486 6.751888 GGCAAACAATGTTTCTATAAGCGAAT 59.248 34.615 8.59 0.00 0.00 3.34
486 487 6.090129 GGCAAACAATGTTTCTATAAGCGAA 58.910 36.000 8.59 0.00 0.00 4.70
487 488 5.182190 TGGCAAACAATGTTTCTATAAGCGA 59.818 36.000 8.59 3.06 0.00 4.93
488 489 5.398169 TGGCAAACAATGTTTCTATAAGCG 58.602 37.500 8.59 0.00 0.00 4.68
489 490 6.389906 ACTGGCAAACAATGTTTCTATAAGC 58.610 36.000 8.59 8.08 0.00 3.09
490 491 8.816640 AAACTGGCAAACAATGTTTCTATAAG 57.183 30.769 8.59 5.43 0.00 1.73
491 492 9.606631 AAAAACTGGCAAACAATGTTTCTATAA 57.393 25.926 8.59 0.00 29.30 0.98
493 494 9.606631 TTAAAAACTGGCAAACAATGTTTCTAT 57.393 25.926 8.59 0.00 29.30 1.98
494 495 9.436957 TTTAAAAACTGGCAAACAATGTTTCTA 57.563 25.926 8.59 1.96 29.30 2.10
495 496 7.913674 TTAAAAACTGGCAAACAATGTTTCT 57.086 28.000 8.59 0.00 29.30 2.52
496 497 9.220635 GATTTAAAAACTGGCAAACAATGTTTC 57.779 29.630 8.59 4.35 29.30 2.78
497 498 7.907563 CGATTTAAAAACTGGCAAACAATGTTT 59.092 29.630 5.41 5.41 31.17 2.83
498 499 7.278868 TCGATTTAAAAACTGGCAAACAATGTT 59.721 29.630 0.00 0.00 0.00 2.71
499 500 6.758886 TCGATTTAAAAACTGGCAAACAATGT 59.241 30.769 0.00 0.00 0.00 2.71
500 501 7.171447 TCGATTTAAAAACTGGCAAACAATG 57.829 32.000 0.00 0.00 0.00 2.82
501 502 7.095271 CCATCGATTTAAAAACTGGCAAACAAT 60.095 33.333 0.00 0.00 0.00 2.71
502 503 6.201806 CCATCGATTTAAAAACTGGCAAACAA 59.798 34.615 0.00 0.00 0.00 2.83
503 504 5.694006 CCATCGATTTAAAAACTGGCAAACA 59.306 36.000 0.00 0.00 0.00 2.83
504 505 5.694458 ACCATCGATTTAAAAACTGGCAAAC 59.306 36.000 0.00 0.00 0.00 2.93
505 506 5.848406 ACCATCGATTTAAAAACTGGCAAA 58.152 33.333 0.00 0.00 0.00 3.68
506 507 5.461032 ACCATCGATTTAAAAACTGGCAA 57.539 34.783 0.00 0.00 0.00 4.52
507 508 5.461032 AACCATCGATTTAAAAACTGGCA 57.539 34.783 0.00 0.00 0.00 4.92
508 509 5.923684 TCAAACCATCGATTTAAAAACTGGC 59.076 36.000 0.00 0.00 0.00 4.85
509 510 7.783209 GTTCAAACCATCGATTTAAAAACTGG 58.217 34.615 0.00 0.00 0.00 4.00
526 527 1.661509 GCAGCTTGCGGTTCAAACC 60.662 57.895 1.61 1.61 45.76 3.27
527 528 3.922175 GCAGCTTGCGGTTCAAAC 58.078 55.556 0.00 0.00 33.65 2.93
536 537 4.847255 CGGTTTACTGCAGCTTGC 57.153 55.556 15.27 1.77 45.29 4.01
543 544 1.421382 TTACTGTCGCGGTTTACTGC 58.579 50.000 6.13 3.58 44.53 4.40
544 545 3.247442 TCATTACTGTCGCGGTTTACTG 58.753 45.455 6.13 3.44 0.00 2.74
545 546 3.508762 CTCATTACTGTCGCGGTTTACT 58.491 45.455 6.13 0.00 0.00 2.24
546 547 2.028883 GCTCATTACTGTCGCGGTTTAC 59.971 50.000 6.13 0.00 0.00 2.01
547 548 2.264813 GCTCATTACTGTCGCGGTTTA 58.735 47.619 6.13 0.00 0.00 2.01
548 549 1.076332 GCTCATTACTGTCGCGGTTT 58.924 50.000 6.13 0.00 0.00 3.27
549 550 0.739813 GGCTCATTACTGTCGCGGTT 60.740 55.000 6.13 0.00 0.00 4.44
550 551 1.153628 GGCTCATTACTGTCGCGGT 60.154 57.895 6.13 0.00 0.00 5.68
551 552 2.230940 CGGCTCATTACTGTCGCGG 61.231 63.158 6.13 0.00 0.00 6.46
552 553 2.230940 CCGGCTCATTACTGTCGCG 61.231 63.158 0.00 0.00 0.00 5.87
553 554 2.526120 GCCGGCTCATTACTGTCGC 61.526 63.158 22.15 0.00 0.00 5.19
554 555 1.883084 GGCCGGCTCATTACTGTCG 60.883 63.158 28.56 0.00 0.00 4.35
555 556 0.811616 CTGGCCGGCTCATTACTGTC 60.812 60.000 28.56 5.64 0.00 3.51
556 557 1.221840 CTGGCCGGCTCATTACTGT 59.778 57.895 28.56 0.00 0.00 3.55
557 558 0.811616 GACTGGCCGGCTCATTACTG 60.812 60.000 28.56 14.52 0.00 2.74
558 559 1.264749 TGACTGGCCGGCTCATTACT 61.265 55.000 28.56 5.45 0.00 2.24
559 560 0.811616 CTGACTGGCCGGCTCATTAC 60.812 60.000 28.56 9.02 0.00 1.89
560 561 1.522092 CTGACTGGCCGGCTCATTA 59.478 57.895 28.56 9.70 0.00 1.90
561 562 2.270205 CTGACTGGCCGGCTCATT 59.730 61.111 28.56 16.55 0.00 2.57
562 563 3.790437 CCTGACTGGCCGGCTCAT 61.790 66.667 28.56 11.86 0.00 2.90
571 572 2.608988 ACAGGGGAGCCTGACTGG 60.609 66.667 0.00 0.00 39.96 4.00
572 573 2.667418 CACAGGGGAGCCTGACTG 59.333 66.667 0.00 0.00 39.96 3.51
573 574 2.608988 CCACAGGGGAGCCTGACT 60.609 66.667 0.00 0.00 39.96 3.41
594 595 4.575245 GCGACCAATAGCGCGTGC 62.575 66.667 14.39 14.39 43.96 5.34
599 600 0.041839 GCTCAATGCGACCAATAGCG 60.042 55.000 0.00 0.00 35.87 4.26
600 601 3.833706 GCTCAATGCGACCAATAGC 57.166 52.632 0.00 0.00 0.00 2.97
612 613 1.661341 GCTCTCATTGGACGCTCAAT 58.339 50.000 0.00 0.00 37.81 2.57
613 614 0.391661 GGCTCTCATTGGACGCTCAA 60.392 55.000 0.00 0.00 0.00 3.02
614 615 1.219124 GGCTCTCATTGGACGCTCA 59.781 57.895 0.00 0.00 0.00 4.26
615 616 1.522580 GGGCTCTCATTGGACGCTC 60.523 63.158 0.00 0.00 0.00 5.03
616 617 2.586792 GGGCTCTCATTGGACGCT 59.413 61.111 0.00 0.00 0.00 5.07
617 618 2.514824 GGGGCTCTCATTGGACGC 60.515 66.667 0.00 0.00 0.00 5.19
618 619 2.190578 GGGGGCTCTCATTGGACG 59.809 66.667 0.00 0.00 0.00 4.79
619 620 1.077429 GTGGGGGCTCTCATTGGAC 60.077 63.158 0.00 0.00 0.00 4.02
620 621 0.920763 ATGTGGGGGCTCTCATTGGA 60.921 55.000 0.00 0.00 0.00 3.53
621 622 0.846015 TATGTGGGGGCTCTCATTGG 59.154 55.000 0.00 0.00 0.00 3.16
622 623 1.816961 GCTATGTGGGGGCTCTCATTG 60.817 57.143 0.00 0.00 0.00 2.82
623 624 0.475906 GCTATGTGGGGGCTCTCATT 59.524 55.000 0.00 0.00 0.00 2.57
624 625 0.695462 TGCTATGTGGGGGCTCTCAT 60.695 55.000 0.00 0.00 0.00 2.90
625 626 1.306911 TGCTATGTGGGGGCTCTCA 60.307 57.895 0.00 0.00 0.00 3.27
626 627 1.449353 CTGCTATGTGGGGGCTCTC 59.551 63.158 0.00 0.00 0.00 3.20
627 628 2.750657 GCTGCTATGTGGGGGCTCT 61.751 63.158 0.00 0.00 0.00 4.09
628 629 2.203266 GCTGCTATGTGGGGGCTC 60.203 66.667 0.00 0.00 0.00 4.70
629 630 2.153898 TTTGCTGCTATGTGGGGGCT 62.154 55.000 0.00 0.00 0.00 5.19
630 631 1.682005 TTTGCTGCTATGTGGGGGC 60.682 57.895 0.00 0.00 0.00 5.80
631 632 1.322538 GGTTTGCTGCTATGTGGGGG 61.323 60.000 0.00 0.00 0.00 5.40
632 633 1.322538 GGGTTTGCTGCTATGTGGGG 61.323 60.000 0.00 0.00 0.00 4.96
633 634 1.322538 GGGGTTTGCTGCTATGTGGG 61.323 60.000 0.00 0.00 0.00 4.61
634 635 1.656818 CGGGGTTTGCTGCTATGTGG 61.657 60.000 0.00 0.00 0.00 4.17
635 636 1.656818 CCGGGGTTTGCTGCTATGTG 61.657 60.000 0.00 0.00 0.00 3.21
636 637 1.378514 CCGGGGTTTGCTGCTATGT 60.379 57.895 0.00 0.00 0.00 2.29
637 638 2.120909 CCCGGGGTTTGCTGCTATG 61.121 63.158 14.71 0.00 0.00 2.23
638 639 1.858739 TTCCCGGGGTTTGCTGCTAT 61.859 55.000 23.50 0.00 0.00 2.97
639 640 2.478335 CTTCCCGGGGTTTGCTGCTA 62.478 60.000 23.50 0.00 0.00 3.49
640 641 3.868200 CTTCCCGGGGTTTGCTGCT 62.868 63.158 23.50 0.00 0.00 4.24
641 642 3.373565 CTTCCCGGGGTTTGCTGC 61.374 66.667 23.50 0.00 0.00 5.25
642 643 2.676471 CCTTCCCGGGGTTTGCTG 60.676 66.667 23.50 3.03 0.00 4.41
643 644 2.856988 TCCTTCCCGGGGTTTGCT 60.857 61.111 23.50 0.00 0.00 3.91
644 645 2.361230 CTCCTTCCCGGGGTTTGC 60.361 66.667 23.50 0.00 0.00 3.68
645 646 2.355115 CCTCCTTCCCGGGGTTTG 59.645 66.667 23.50 7.30 0.00 2.93
646 647 3.658422 GCCTCCTTCCCGGGGTTT 61.658 66.667 23.50 0.00 0.00 3.27
653 654 4.785453 CTGTGCGGCCTCCTTCCC 62.785 72.222 0.00 0.00 0.00 3.97
714 722 3.691498 CCACGGTGACTGTTTTTCTTTC 58.309 45.455 10.28 0.00 0.00 2.62
864 872 3.361977 GTGTTGAACGCCGGCCAT 61.362 61.111 23.46 10.13 0.00 4.40
877 885 0.613777 GGGAAGATCGTCCTGGTGTT 59.386 55.000 24.36 0.00 37.85 3.32
950 963 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
951 964 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
952 965 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
953 966 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
954 967 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
955 968 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
956 969 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
980 993 1.765904 TCTTGGCTTCCTGTGTGTGTA 59.234 47.619 0.00 0.00 0.00 2.90
1090 1110 2.802816 GAGAGAAAACGAAGAAGCAGCA 59.197 45.455 0.00 0.00 0.00 4.41
1293 1325 5.751990 GGACGTATGACCGATTACTTTTCAT 59.248 40.000 0.00 0.00 0.00 2.57
1320 1352 5.629079 CTGAAAGTTCCAACCAATAGGAC 57.371 43.478 0.00 0.00 38.69 3.85
1523 1600 2.110835 TCTTCTGGCTGCGCAACA 59.889 55.556 13.05 13.06 0.00 3.33
1528 1605 0.236711 CAAACTGTCTTCTGGCTGCG 59.763 55.000 0.00 0.00 0.00 5.18
1538 1615 8.747538 ATTTTCTACAGGTAAACAAACTGTCT 57.252 30.769 0.00 0.00 43.78 3.41
1552 1640 4.976731 CGTAGGACGATGATTTTCTACAGG 59.023 45.833 0.00 0.00 46.05 4.00
1575 1663 6.819397 ATCAAGGCACCTTACTTTAAGAAC 57.181 37.500 0.61 0.00 38.02 3.01
1589 1677 6.024552 TGACCTAAATCAAAATCAAGGCAC 57.975 37.500 0.00 0.00 0.00 5.01
1592 1680 9.762933 TTTCTTTGACCTAAATCAAAATCAAGG 57.237 29.630 2.85 0.00 45.52 3.61
1595 1683 9.624697 CGATTTCTTTGACCTAAATCAAAATCA 57.375 29.630 0.00 0.00 45.52 2.57
1596 1684 9.840427 TCGATTTCTTTGACCTAAATCAAAATC 57.160 29.630 0.00 3.00 45.52 2.17
1597 1685 9.846248 CTCGATTTCTTTGACCTAAATCAAAAT 57.154 29.630 0.00 0.00 45.52 1.82
1598 1686 9.062524 TCTCGATTTCTTTGACCTAAATCAAAA 57.937 29.630 0.00 0.00 45.52 2.44
1599 1687 8.615878 TCTCGATTTCTTTGACCTAAATCAAA 57.384 30.769 0.00 1.36 44.40 2.69
1600 1688 8.668353 CATCTCGATTTCTTTGACCTAAATCAA 58.332 33.333 0.00 0.00 38.81 2.57
1605 1693 5.582269 CAGCATCTCGATTTCTTTGACCTAA 59.418 40.000 0.00 0.00 0.00 2.69
1617 1705 0.538584 TGTCCAGCAGCATCTCGATT 59.461 50.000 0.00 0.00 0.00 3.34
1732 1821 3.618690 AGAGACTAAGGTGATGGCAAC 57.381 47.619 0.00 0.00 0.00 4.17
1789 1879 1.000396 GCTTCCTGCAGGTGGGAAT 60.000 57.895 31.58 0.00 40.31 3.01
1792 1882 0.257039 ATTAGCTTCCTGCAGGTGGG 59.743 55.000 31.58 21.81 45.94 4.61
1808 1898 7.009179 AGTGACTGATTTTGACTCCTCATTA 57.991 36.000 0.00 0.00 0.00 1.90
1876 1966 8.892723 CCACTCAGAAATGCAATTAGTATACAA 58.107 33.333 5.50 0.00 33.67 2.41
1877 1967 8.046708 ACCACTCAGAAATGCAATTAGTATACA 58.953 33.333 5.50 0.00 33.67 2.29
1878 1968 8.438676 ACCACTCAGAAATGCAATTAGTATAC 57.561 34.615 0.00 0.00 33.67 1.47
1880 1970 9.632638 ATTACCACTCAGAAATGCAATTAGTAT 57.367 29.630 0.00 0.00 33.67 2.12
1908 2162 5.130292 ACGTCCCACTTATATCATTACCG 57.870 43.478 0.00 0.00 0.00 4.02
1914 2168 6.645306 TCATTCAAACGTCCCACTTATATCA 58.355 36.000 0.00 0.00 0.00 2.15
1921 2175 1.812571 GCATCATTCAAACGTCCCACT 59.187 47.619 0.00 0.00 0.00 4.00
1923 2177 1.902938 TGCATCATTCAAACGTCCCA 58.097 45.000 0.00 0.00 0.00 4.37
1926 2180 4.142622 TGGAAGATGCATCATTCAAACGTC 60.143 41.667 27.81 13.63 0.00 4.34
1927 2181 3.758023 TGGAAGATGCATCATTCAAACGT 59.242 39.130 27.81 1.29 0.00 3.99
1933 2187 4.037565 TGATTGCTGGAAGATGCATCATTC 59.962 41.667 27.81 23.83 39.07 2.67
2026 2280 6.166279 TCAGTCAGTACATTTCTGTCCATTC 58.834 40.000 0.00 0.00 36.79 2.67
2072 2327 5.560722 TTTAGTCAGGTGAATTCAGGTGA 57.439 39.130 8.80 11.64 0.00 4.02
2239 2494 5.768662 ACTAGCCTGCTGTCGATTATTACTA 59.231 40.000 0.97 0.00 0.00 1.82
2240 2495 4.585162 ACTAGCCTGCTGTCGATTATTACT 59.415 41.667 0.97 0.00 0.00 2.24
2241 2496 4.872664 ACTAGCCTGCTGTCGATTATTAC 58.127 43.478 0.97 0.00 0.00 1.89
2242 2497 5.533528 TGTACTAGCCTGCTGTCGATTATTA 59.466 40.000 0.97 0.00 0.00 0.98
2243 2498 4.341235 TGTACTAGCCTGCTGTCGATTATT 59.659 41.667 0.97 0.00 0.00 1.40
2244 2499 3.889538 TGTACTAGCCTGCTGTCGATTAT 59.110 43.478 0.97 0.00 0.00 1.28
2245 2500 3.284617 TGTACTAGCCTGCTGTCGATTA 58.715 45.455 0.97 0.00 0.00 1.75
2246 2501 2.100197 TGTACTAGCCTGCTGTCGATT 58.900 47.619 0.97 0.00 0.00 3.34
2302 2674 8.092687 TGGACTAACTCATTCTTTAACTGGTAC 58.907 37.037 0.00 0.00 0.00 3.34
2321 2734 8.855110 TCACAGCTTAAAATGATTTTGGACTAA 58.145 29.630 13.08 0.00 34.19 2.24
2346 2759 9.529325 AAAAGCAGTACATTAAACTTTTTCCTC 57.471 29.630 0.00 0.00 34.60 3.71
2350 2763 9.660180 TGGAAAAAGCAGTACATTAAACTTTTT 57.340 25.926 10.14 10.14 45.14 1.94
2397 2810 6.881065 ACTGCAATTATCAAGAGCTAGTGAAA 59.119 34.615 3.10 1.17 0.00 2.69
2400 2813 5.503683 GCACTGCAATTATCAAGAGCTAGTG 60.504 44.000 0.00 0.00 37.38 2.74
2401 2814 4.574013 GCACTGCAATTATCAAGAGCTAGT 59.426 41.667 0.00 0.00 0.00 2.57
2408 2821 4.690184 TCAGTGCACTGCAATTATCAAG 57.310 40.909 36.76 13.37 41.47 3.02
2414 2827 3.216800 TCTTCTTCAGTGCACTGCAATT 58.783 40.909 36.76 4.95 41.47 2.32
2470 2883 6.610830 AGAAGATGGACAGTGAGTTAGATCAT 59.389 38.462 0.00 0.00 0.00 2.45
2472 2885 6.127479 ACAGAAGATGGACAGTGAGTTAGATC 60.127 42.308 0.00 0.00 0.00 2.75
2486 2899 1.808411 GTTTCGGCACAGAAGATGGA 58.192 50.000 0.00 0.00 0.00 3.41
2497 2910 1.503818 GCTCCTTGTTCGTTTCGGCA 61.504 55.000 0.00 0.00 0.00 5.69
2540 2953 6.599244 TGGATAGTTTGCCTCAAATTCTGTAG 59.401 38.462 0.00 0.00 35.74 2.74
2642 3055 9.651718 GGTTTAAACTGAAATTATAGATCAGCG 57.348 33.333 17.50 0.00 43.41 5.18
2667 3080 1.868498 TCAAAAACGGTAGCAAGACGG 59.132 47.619 0.00 0.00 0.00 4.79
2778 3193 8.819974 TGAATTCAGAAAGACAAATGCTTTTTC 58.180 29.630 3.38 0.00 35.83 2.29
2783 3198 7.384115 CACATTGAATTCAGAAAGACAAATGCT 59.616 33.333 8.41 0.00 0.00 3.79
2878 3293 2.009774 CGACCGATTCCTTGAATTGCT 58.990 47.619 0.00 0.00 33.41 3.91
2896 3311 1.140852 CCATAATCAACCTGCCCTCGA 59.859 52.381 0.00 0.00 0.00 4.04
2937 3352 2.129607 CATGAGGTTTGCAACACAAGC 58.870 47.619 0.00 0.00 40.06 4.01
2962 3377 6.566079 ATGAATTAAGACCCATCAGACTCA 57.434 37.500 0.00 0.00 0.00 3.41
3087 3502 5.279456 GCAATCTCCCAAAATTACCTGTTGT 60.279 40.000 0.00 0.00 0.00 3.32
3104 3520 4.400567 AGCTAAATGGAAACCTGCAATCTC 59.599 41.667 0.00 0.00 0.00 2.75
3112 3528 4.202567 TGACCAAGAGCTAAATGGAAACCT 60.203 41.667 16.48 0.00 37.66 3.50
3113 3529 4.079253 TGACCAAGAGCTAAATGGAAACC 58.921 43.478 16.48 5.60 37.66 3.27
3120 3536 9.045223 GTTTTGATTTTTGACCAAGAGCTAAAT 57.955 29.630 0.00 0.00 0.00 1.40
3201 3761 4.750098 ACAGTACATCAGACCAAAGAAACG 59.250 41.667 0.00 0.00 0.00 3.60
3209 3769 4.152647 AGTGAAGACAGTACATCAGACCA 58.847 43.478 0.00 0.00 0.00 4.02
3234 3794 8.548721 GGACCAACGATCTAACATTACTAATTG 58.451 37.037 0.00 0.00 0.00 2.32
3240 3800 6.730960 TTTGGACCAACGATCTAACATTAC 57.269 37.500 6.36 0.00 0.00 1.89
3279 3839 1.808411 TGTGAAATCGCTGGAGGTTC 58.192 50.000 0.00 0.00 0.00 3.62
3315 3875 5.895636 TGTTAGATGCCATTGGTAAACAG 57.104 39.130 4.26 0.00 0.00 3.16
3316 3876 6.629128 CAATGTTAGATGCCATTGGTAAACA 58.371 36.000 10.64 10.64 42.58 2.83
3400 3960 5.543507 AATAGACCTGGCTCTCTATGTTG 57.456 43.478 6.19 0.00 31.35 3.33
3511 4074 3.821033 GGTTTACAGCATTCTGAACCTGT 59.179 43.478 21.59 21.59 40.92 4.00
3577 4140 2.029828 GCACTTCCTCGACTTCTTCTGA 60.030 50.000 0.00 0.00 0.00 3.27
3589 4152 1.530293 GCGATCATCATGCACTTCCTC 59.470 52.381 0.00 0.00 0.00 3.71
3649 4212 3.961480 GCCCAAGGCTTTAAAACTGAT 57.039 42.857 0.00 0.00 46.69 2.90
3826 4399 3.181491 GCCAAATCGCAACTTAGCCATAA 60.181 43.478 0.00 0.00 0.00 1.90
3832 4405 2.187707 GCATGCCAAATCGCAACTTAG 58.812 47.619 6.36 0.00 43.24 2.18
3838 4411 2.255994 CTGTCGCATGCCAAATCGCA 62.256 55.000 13.15 0.10 44.35 5.10
3865 4438 6.488769 TTCTTGGTTCCGCCTTATATAGAA 57.511 37.500 0.00 0.00 38.35 2.10
3872 4445 2.158726 ACTGTTTCTTGGTTCCGCCTTA 60.159 45.455 0.00 0.00 38.35 2.69
3873 4446 1.318576 CTGTTTCTTGGTTCCGCCTT 58.681 50.000 0.00 0.00 38.35 4.35
3877 4450 1.676006 AGCAACTGTTTCTTGGTTCCG 59.324 47.619 0.00 0.00 0.00 4.30
3976 4550 6.597672 TGTATGTCAACTCAACTCAAACAAGT 59.402 34.615 0.00 0.00 0.00 3.16
3991 4565 9.922305 GCTATTGAAACTCTTATGTATGTCAAC 57.078 33.333 0.00 0.00 0.00 3.18
3992 4566 9.665719 TGCTATTGAAACTCTTATGTATGTCAA 57.334 29.630 0.00 0.00 0.00 3.18
3993 4567 9.665719 TTGCTATTGAAACTCTTATGTATGTCA 57.334 29.630 0.00 0.00 0.00 3.58
4057 7654 5.746721 GTCAAATCGGGGTAAATTGTATTGC 59.253 40.000 0.00 0.00 0.00 3.56
4065 7662 5.947663 TGGATATGTCAAATCGGGGTAAAT 58.052 37.500 0.00 0.00 0.00 1.40
4155 7753 7.307455 GCTCTGGAAATGGATACTTTACGAATC 60.307 40.741 0.00 0.00 32.90 2.52
4160 7758 6.349300 TCAGCTCTGGAAATGGATACTTTAC 58.651 40.000 0.00 0.00 32.90 2.01
4161 7759 6.560003 TCAGCTCTGGAAATGGATACTTTA 57.440 37.500 0.00 0.00 32.90 1.85
4162 7760 5.441718 TCAGCTCTGGAAATGGATACTTT 57.558 39.130 0.00 0.00 35.05 2.66
4163 7761 5.104193 ACATCAGCTCTGGAAATGGATACTT 60.104 40.000 0.00 0.00 37.61 2.24
4164 7762 4.411540 ACATCAGCTCTGGAAATGGATACT 59.588 41.667 0.00 0.00 37.61 2.12
4170 7768 1.404391 GGCACATCAGCTCTGGAAATG 59.596 52.381 0.00 0.00 34.17 2.32
4195 7793 7.885399 AGATAATTGGATAGAATAAAAGCGGCT 59.115 33.333 0.00 0.00 0.00 5.52
4313 7916 4.887748 CTGAAGAGCAGTTCTGGACTAAA 58.112 43.478 1.97 0.00 39.85 1.85
4490 8100 1.693606 CCATGGGAAAAGGCAAGTTGT 59.306 47.619 2.85 0.00 0.00 3.32
4539 8149 4.809193 TCTATGATAGGGTGCTCAAGACT 58.191 43.478 0.00 0.00 0.00 3.24
4554 8164 1.837439 TCGGGTGCCAACTTCTATGAT 59.163 47.619 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.