Multiple sequence alignment - TraesCS2D01G224000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G224000 chr2D 100.000 4578 0 0 4470 9047 190996718 191001295 0.000000e+00 8455.0
1 TraesCS2D01G224000 chr2D 100.000 3913 0 0 1 3913 190992249 190996161 0.000000e+00 7227.0
2 TraesCS2D01G224000 chr2D 95.259 1118 53 0 2796 3913 476317577 476316460 0.000000e+00 1772.0
3 TraesCS2D01G224000 chr2D 94.212 1002 45 8 4654 5650 601173351 601172358 0.000000e+00 1517.0
4 TraesCS2D01G224000 chr2D 94.585 277 11 1 5920 6192 78513308 78513032 8.400000e-115 425.0
5 TraesCS2D01G224000 chr2D 94.909 275 9 2 5922 6191 591105594 591105868 8.400000e-115 425.0
6 TraesCS2D01G224000 chr2D 96.296 135 3 2 5737 5871 48183453 48183585 4.250000e-53 220.0
7 TraesCS2D01G224000 chr2D 92.941 85 6 0 8963 9047 635078159 635078243 3.430000e-24 124.0
8 TraesCS2D01G224000 chr2D 98.182 55 1 0 1 55 291241989 291241935 7.480000e-16 97.1
9 TraesCS2D01G224000 chr2D 98.182 55 1 0 1 55 419504456 419504402 7.480000e-16 97.1
10 TraesCS2D01G224000 chr2B 96.247 2425 58 9 6570 8962 248693876 248691453 0.000000e+00 3943.0
11 TraesCS2D01G224000 chr2B 94.826 1121 43 6 847 1960 248697508 248696396 0.000000e+00 1735.0
12 TraesCS2D01G224000 chr2B 93.249 711 42 4 2041 2749 248695013 248694307 0.000000e+00 1042.0
13 TraesCS2D01G224000 chr2B 84.428 822 103 24 4944 5755 251120251 251119445 0.000000e+00 785.0
14 TraesCS2D01G224000 chr2B 94.175 412 18 4 6181 6587 248694296 248693886 2.770000e-174 623.0
15 TraesCS2D01G224000 chr2B 95.506 89 4 0 8959 9047 798376416 798376328 9.470000e-30 143.0
16 TraesCS2D01G224000 chr2B 93.182 88 6 0 8960 9047 605492612 605492699 7.370000e-26 130.0
17 TraesCS2D01G224000 chr2B 94.667 75 4 0 1965 2039 248696332 248696258 5.740000e-22 117.0
18 TraesCS2D01G224000 chr2A 97.131 1673 38 5 6589 8252 206443696 206442025 0.000000e+00 2815.0
19 TraesCS2D01G224000 chr2A 95.204 1126 54 0 2788 3913 598624088 598625213 0.000000e+00 1781.0
20 TraesCS2D01G224000 chr2A 96.765 1051 33 1 911 1960 206446620 206445570 0.000000e+00 1751.0
21 TraesCS2D01G224000 chr2A 93.151 803 41 6 1959 2748 206445518 206444717 0.000000e+00 1166.0
22 TraesCS2D01G224000 chr2A 93.651 315 15 2 6269 6578 206444501 206444187 4.950000e-127 466.0
23 TraesCS2D01G224000 chr2A 94.715 246 12 1 8718 8962 206422193 206421948 1.840000e-101 381.0
24 TraesCS2D01G224000 chr2A 94.505 182 9 1 8455 8636 206422387 206422207 6.920000e-71 279.0
25 TraesCS2D01G224000 chr2A 96.739 92 2 1 6181 6271 206444705 206444614 1.570000e-32 152.0
26 TraesCS2D01G224000 chr2A 93.182 88 5 1 8960 9047 519400997 519400911 2.650000e-25 128.0
27 TraesCS2D01G224000 chr7D 96.975 1124 33 1 2790 3913 544781074 544782196 0.000000e+00 1886.0
28 TraesCS2D01G224000 chr7D 90.952 1271 63 17 4655 5878 7216119 7214854 0.000000e+00 1663.0
29 TraesCS2D01G224000 chr7D 85.585 1103 131 21 4657 5747 135421821 135422907 0.000000e+00 1131.0
30 TraesCS2D01G224000 chr7D 83.742 898 92 28 5015 5872 11522169 11521286 0.000000e+00 800.0
31 TraesCS2D01G224000 chr7D 82.618 909 100 33 5015 5878 22919333 22918438 0.000000e+00 750.0
32 TraesCS2D01G224000 chr7D 97.368 266 3 1 5922 6183 208558111 208557846 4.980000e-122 449.0
33 TraesCS2D01G224000 chr7D 93.023 86 6 0 8962 9047 197173957 197173872 9.540000e-25 126.0
34 TraesCS2D01G224000 chr1D 96.705 1123 37 0 2791 3913 292525842 292524720 0.000000e+00 1869.0
35 TraesCS2D01G224000 chr1D 90.392 791 69 7 59 847 335346413 335345628 0.000000e+00 1033.0
36 TraesCS2D01G224000 chr1D 88.050 795 84 10 60 850 297540895 297541682 0.000000e+00 931.0
37 TraesCS2D01G224000 chr1D 93.684 95 6 0 8953 9047 80967818 80967912 9.470000e-30 143.0
38 TraesCS2D01G224000 chr1D 93.182 88 6 0 8960 9047 462912184 462912271 7.370000e-26 130.0
39 TraesCS2D01G224000 chr1D 91.765 85 7 0 8963 9047 462924966 462924882 1.600000e-22 119.0
40 TraesCS2D01G224000 chr1D 98.182 55 1 0 1 55 194505575 194505521 7.480000e-16 97.1
41 TraesCS2D01G224000 chr3D 96.515 1119 38 1 2795 3913 94804947 94803830 0.000000e+00 1849.0
42 TraesCS2D01G224000 chr3D 96.025 1132 43 2 2782 3913 582096269 582097398 0.000000e+00 1840.0
43 TraesCS2D01G224000 chr3D 95.897 1121 45 1 2791 3911 73725574 73726693 0.000000e+00 1814.0
44 TraesCS2D01G224000 chr3D 98.246 57 1 0 1 57 266514203 266514259 5.780000e-17 100.0
45 TraesCS2D01G224000 chr5A 96.336 1119 41 0 2795 3913 71471865 71472983 0.000000e+00 1840.0
46 TraesCS2D01G224000 chr5A 89.272 1277 70 28 4659 5878 465288254 465286988 0.000000e+00 1537.0
47 TraesCS2D01G224000 chr3A 94.991 1118 54 2 2796 3913 690719072 690717957 0.000000e+00 1753.0
48 TraesCS2D01G224000 chr3A 83.318 1103 157 18 4659 5747 25111699 25110610 0.000000e+00 992.0
49 TraesCS2D01G224000 chr3A 89.367 790 77 6 59 845 271811180 271811965 0.000000e+00 987.0
50 TraesCS2D01G224000 chr7B 90.873 1249 79 11 4660 5877 103527206 103528450 0.000000e+00 1642.0
51 TraesCS2D01G224000 chr7B 85.314 749 90 15 5015 5755 732606992 732607728 0.000000e+00 756.0
52 TraesCS2D01G224000 chr7B 88.485 165 12 7 5718 5878 697060281 697060120 9.270000e-45 193.0
53 TraesCS2D01G224000 chr4D 90.397 1260 69 22 4655 5878 360095409 360096652 0.000000e+00 1609.0
54 TraesCS2D01G224000 chr4D 91.763 1129 60 19 4655 5755 115930607 115931730 0.000000e+00 1539.0
55 TraesCS2D01G224000 chr4D 88.987 790 77 6 60 847 289507572 289508353 0.000000e+00 968.0
56 TraesCS2D01G224000 chr4D 85.501 738 97 8 5130 5859 92662863 92662128 0.000000e+00 761.0
57 TraesCS2D01G224000 chr4D 90.278 72 6 1 8959 9029 477873874 477873945 9.670000e-15 93.5
58 TraesCS2D01G224000 chr1B 90.057 1237 86 25 4655 5878 592362987 592361775 0.000000e+00 1568.0
59 TraesCS2D01G224000 chr1B 95.181 83 4 0 8964 9046 216094127 216094045 2.050000e-26 132.0
60 TraesCS2D01G224000 chr3B 91.343 1132 65 5 4655 5755 7289220 7288091 0.000000e+00 1517.0
61 TraesCS2D01G224000 chr3B 90.260 1191 65 15 4738 5882 644313596 644314781 0.000000e+00 1509.0
62 TraesCS2D01G224000 chr3B 87.856 807 79 14 60 856 252955685 252956482 0.000000e+00 929.0
63 TraesCS2D01G224000 chr6B 90.493 1136 70 20 4654 5755 691141798 691140667 0.000000e+00 1465.0
64 TraesCS2D01G224000 chr6B 89.227 789 81 4 59 845 229082263 229083049 0.000000e+00 983.0
65 TraesCS2D01G224000 chr6B 94.186 86 5 0 8962 9047 96682192 96682107 2.050000e-26 132.0
66 TraesCS2D01G224000 chr5B 90.158 1138 76 17 4655 5759 231837143 231838277 0.000000e+00 1448.0
67 TraesCS2D01G224000 chr5B 85.274 747 85 20 5015 5748 318283007 318282273 0.000000e+00 747.0
68 TraesCS2D01G224000 chr5B 94.909 275 8 3 5913 6183 616732125 616731853 8.400000e-115 425.0
69 TraesCS2D01G224000 chr5B 92.958 142 8 2 5737 5878 463947036 463947175 1.190000e-48 206.0
70 TraesCS2D01G224000 chr6A 82.357 1383 168 44 4655 5993 547596526 547595176 0.000000e+00 1133.0
71 TraesCS2D01G224000 chr6A 92.045 88 5 2 8961 9047 609824710 609824624 1.230000e-23 122.0
72 TraesCS2D01G224000 chr6A 91.954 87 7 0 8961 9047 613625937 613625851 1.230000e-23 122.0
73 TraesCS2D01G224000 chr6A 91.011 89 8 0 8959 9047 609824172 609824260 4.440000e-23 121.0
74 TraesCS2D01G224000 chr6A 96.491 57 2 0 1 57 77728489 77728433 2.690000e-15 95.3
75 TraesCS2D01G224000 chr5D 88.579 788 80 7 60 845 91724013 91724792 0.000000e+00 948.0
76 TraesCS2D01G224000 chr5D 88.579 788 74 13 68 850 225747457 225746681 0.000000e+00 942.0
77 TraesCS2D01G224000 chr5D 95.926 270 7 1 5918 6183 247327131 247327400 1.400000e-117 435.0
78 TraesCS2D01G224000 chr5D 94.186 86 5 0 8962 9047 434753971 434754056 2.050000e-26 132.0
79 TraesCS2D01G224000 chr4B 88.593 789 79 8 62 847 241212413 241211633 0.000000e+00 948.0
80 TraesCS2D01G224000 chr4B 94.118 85 5 0 8963 9047 591275816 591275732 7.370000e-26 130.0
81 TraesCS2D01G224000 chr6D 87.076 472 38 15 5737 6189 418462165 418462632 6.260000e-141 512.0
82 TraesCS2D01G224000 chr6D 96.578 263 5 1 5925 6183 37522328 37522066 5.020000e-117 433.0
83 TraesCS2D01G224000 chr6D 85.526 76 11 0 8952 9027 472375752 472375827 7.530000e-11 80.5
84 TraesCS2D01G224000 chr7A 95.572 271 8 2 5922 6188 17392731 17393001 1.800000e-116 431.0
85 TraesCS2D01G224000 chr7A 92.135 89 7 0 8959 9047 126960711 126960799 9.540000e-25 126.0
86 TraesCS2D01G224000 chr4A 95.911 269 6 2 5920 6183 185383525 185383793 1.800000e-116 431.0
87 TraesCS2D01G224000 chr4A 96.947 131 1 3 5737 5866 58318307 58318435 5.500000e-52 217.0
88 TraesCS2D01G224000 chr1A 89.773 88 9 0 8960 9047 535038508 535038421 7.420000e-21 113.0
89 TraesCS2D01G224000 chr1A 96.491 57 2 0 1 57 514344742 514344686 2.690000e-15 95.3
90 TraesCS2D01G224000 chr1A 96.491 57 2 0 1 57 514359277 514359221 2.690000e-15 95.3
91 TraesCS2D01G224000 chrUn 96.364 55 2 0 1 55 369236750 369236696 3.480000e-14 91.6
92 TraesCS2D01G224000 chrUn 96.364 55 2 0 1 55 384393610 384393556 3.480000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G224000 chr2D 190992249 191001295 9046 False 7841 8455 100.0000 1 9047 2 chr2D.!!$F4 9046
1 TraesCS2D01G224000 chr2D 476316460 476317577 1117 True 1772 1772 95.2590 2796 3913 1 chr2D.!!$R4 1117
2 TraesCS2D01G224000 chr2D 601172358 601173351 993 True 1517 1517 94.2120 4654 5650 1 chr2D.!!$R5 996
3 TraesCS2D01G224000 chr2B 248691453 248697508 6055 True 1492 3943 94.6328 847 8962 5 chr2B.!!$R3 8115
4 TraesCS2D01G224000 chr2B 251119445 251120251 806 True 785 785 84.4280 4944 5755 1 chr2B.!!$R1 811
5 TraesCS2D01G224000 chr2A 598624088 598625213 1125 False 1781 1781 95.2040 2788 3913 1 chr2A.!!$F1 1125
6 TraesCS2D01G224000 chr2A 206442025 206446620 4595 True 1270 2815 95.4874 911 8252 5 chr2A.!!$R3 7341
7 TraesCS2D01G224000 chr7D 544781074 544782196 1122 False 1886 1886 96.9750 2790 3913 1 chr7D.!!$F2 1123
8 TraesCS2D01G224000 chr7D 7214854 7216119 1265 True 1663 1663 90.9520 4655 5878 1 chr7D.!!$R1 1223
9 TraesCS2D01G224000 chr7D 135421821 135422907 1086 False 1131 1131 85.5850 4657 5747 1 chr7D.!!$F1 1090
10 TraesCS2D01G224000 chr7D 11521286 11522169 883 True 800 800 83.7420 5015 5872 1 chr7D.!!$R2 857
11 TraesCS2D01G224000 chr7D 22918438 22919333 895 True 750 750 82.6180 5015 5878 1 chr7D.!!$R3 863
12 TraesCS2D01G224000 chr1D 292524720 292525842 1122 True 1869 1869 96.7050 2791 3913 1 chr1D.!!$R2 1122
13 TraesCS2D01G224000 chr1D 335345628 335346413 785 True 1033 1033 90.3920 59 847 1 chr1D.!!$R3 788
14 TraesCS2D01G224000 chr1D 297540895 297541682 787 False 931 931 88.0500 60 850 1 chr1D.!!$F2 790
15 TraesCS2D01G224000 chr3D 94803830 94804947 1117 True 1849 1849 96.5150 2795 3913 1 chr3D.!!$R1 1118
16 TraesCS2D01G224000 chr3D 582096269 582097398 1129 False 1840 1840 96.0250 2782 3913 1 chr3D.!!$F3 1131
17 TraesCS2D01G224000 chr3D 73725574 73726693 1119 False 1814 1814 95.8970 2791 3911 1 chr3D.!!$F1 1120
18 TraesCS2D01G224000 chr5A 71471865 71472983 1118 False 1840 1840 96.3360 2795 3913 1 chr5A.!!$F1 1118
19 TraesCS2D01G224000 chr5A 465286988 465288254 1266 True 1537 1537 89.2720 4659 5878 1 chr5A.!!$R1 1219
20 TraesCS2D01G224000 chr3A 690717957 690719072 1115 True 1753 1753 94.9910 2796 3913 1 chr3A.!!$R2 1117
21 TraesCS2D01G224000 chr3A 25110610 25111699 1089 True 992 992 83.3180 4659 5747 1 chr3A.!!$R1 1088
22 TraesCS2D01G224000 chr3A 271811180 271811965 785 False 987 987 89.3670 59 845 1 chr3A.!!$F1 786
23 TraesCS2D01G224000 chr7B 103527206 103528450 1244 False 1642 1642 90.8730 4660 5877 1 chr7B.!!$F1 1217
24 TraesCS2D01G224000 chr7B 732606992 732607728 736 False 756 756 85.3140 5015 5755 1 chr7B.!!$F2 740
25 TraesCS2D01G224000 chr4D 360095409 360096652 1243 False 1609 1609 90.3970 4655 5878 1 chr4D.!!$F3 1223
26 TraesCS2D01G224000 chr4D 115930607 115931730 1123 False 1539 1539 91.7630 4655 5755 1 chr4D.!!$F1 1100
27 TraesCS2D01G224000 chr4D 289507572 289508353 781 False 968 968 88.9870 60 847 1 chr4D.!!$F2 787
28 TraesCS2D01G224000 chr4D 92662128 92662863 735 True 761 761 85.5010 5130 5859 1 chr4D.!!$R1 729
29 TraesCS2D01G224000 chr1B 592361775 592362987 1212 True 1568 1568 90.0570 4655 5878 1 chr1B.!!$R2 1223
30 TraesCS2D01G224000 chr3B 7288091 7289220 1129 True 1517 1517 91.3430 4655 5755 1 chr3B.!!$R1 1100
31 TraesCS2D01G224000 chr3B 644313596 644314781 1185 False 1509 1509 90.2600 4738 5882 1 chr3B.!!$F2 1144
32 TraesCS2D01G224000 chr3B 252955685 252956482 797 False 929 929 87.8560 60 856 1 chr3B.!!$F1 796
33 TraesCS2D01G224000 chr6B 691140667 691141798 1131 True 1465 1465 90.4930 4654 5755 1 chr6B.!!$R2 1101
34 TraesCS2D01G224000 chr6B 229082263 229083049 786 False 983 983 89.2270 59 845 1 chr6B.!!$F1 786
35 TraesCS2D01G224000 chr5B 231837143 231838277 1134 False 1448 1448 90.1580 4655 5759 1 chr5B.!!$F1 1104
36 TraesCS2D01G224000 chr5B 318282273 318283007 734 True 747 747 85.2740 5015 5748 1 chr5B.!!$R1 733
37 TraesCS2D01G224000 chr6A 547595176 547596526 1350 True 1133 1133 82.3570 4655 5993 1 chr6A.!!$R2 1338
38 TraesCS2D01G224000 chr5D 91724013 91724792 779 False 948 948 88.5790 60 845 1 chr5D.!!$F1 785
39 TraesCS2D01G224000 chr5D 225746681 225747457 776 True 942 942 88.5790 68 850 1 chr5D.!!$R1 782
40 TraesCS2D01G224000 chr4B 241211633 241212413 780 True 948 948 88.5930 62 847 1 chr4B.!!$R1 785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
868 881 0.991920 ACCATCGAGGGACAAATGGT 59.008 50.0 25.24 10.41 45.44 3.55 F
2039 2119 0.036875 AGCAAGCTGTCCAGGGTAAC 59.963 55.0 0.00 0.00 0.00 2.50 F
2777 4110 0.983378 AGAAATGGAGGAGGACCCCG 60.983 60.0 0.00 0.00 36.73 5.73 F
4644 5977 0.385723 CGAGGTAAGATACTCCGCGC 60.386 60.0 0.00 0.00 37.66 6.86 F
5956 7397 0.036732 TTGGCCTCTGCACCAACTAG 59.963 55.0 3.32 0.00 40.98 2.57 F
6140 7581 0.037975 TTGAACTCGGGTCGTTAGGC 60.038 55.0 0.00 0.00 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2776 4109 0.107703 TCAGTAAATGCAGAGCCCCG 60.108 55.000 0.00 0.00 0.00 5.73 R
2846 4179 1.528161 GGTGTAGCGTGTGTTTGTACC 59.472 52.381 0.00 0.00 0.00 3.34 R
4646 5979 0.037882 ATGCAGAGCCCGATATCGTG 60.038 55.000 22.81 13.72 37.74 4.35 R
6121 7562 0.037975 GCCTAACGACCCGAGTTCAA 60.038 55.000 0.00 0.00 33.42 2.69 R
7518 9562 1.441729 ACCGTCAGATATGGTGCCG 59.558 57.895 0.00 0.00 46.34 5.69 R
8048 10092 1.290955 CAAGGCACACCCATTGCAG 59.709 57.895 0.00 0.00 42.12 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.196971 AGGTTGAAGTGGCGTATTTATCC 58.803 43.478 0.00 0.00 0.00 2.59
23 24 3.001939 GGTTGAAGTGGCGTATTTATCCG 59.998 47.826 0.00 0.00 0.00 4.18
24 25 2.828877 TGAAGTGGCGTATTTATCCGG 58.171 47.619 0.00 0.00 0.00 5.14
25 26 2.431419 TGAAGTGGCGTATTTATCCGGA 59.569 45.455 6.61 6.61 0.00 5.14
26 27 2.814280 AGTGGCGTATTTATCCGGAG 57.186 50.000 11.34 0.00 0.00 4.63
27 28 2.313317 AGTGGCGTATTTATCCGGAGA 58.687 47.619 11.34 0.75 0.00 3.71
28 29 2.696707 AGTGGCGTATTTATCCGGAGAA 59.303 45.455 11.34 9.43 0.00 2.87
29 30 3.057734 GTGGCGTATTTATCCGGAGAAG 58.942 50.000 11.98 1.43 0.00 2.85
30 31 2.036733 TGGCGTATTTATCCGGAGAAGG 59.963 50.000 11.98 4.49 0.00 3.46
31 32 2.067013 GCGTATTTATCCGGAGAAGGC 58.933 52.381 11.98 10.45 0.00 4.35
32 33 2.547218 GCGTATTTATCCGGAGAAGGCA 60.547 50.000 11.98 0.00 0.00 4.75
33 34 3.724374 CGTATTTATCCGGAGAAGGCAA 58.276 45.455 11.98 0.00 0.00 4.52
34 35 3.741344 CGTATTTATCCGGAGAAGGCAAG 59.259 47.826 11.98 0.78 0.00 4.01
35 36 3.933861 ATTTATCCGGAGAAGGCAAGT 57.066 42.857 11.98 0.00 0.00 3.16
36 37 5.508489 CGTATTTATCCGGAGAAGGCAAGTA 60.508 44.000 11.98 0.00 0.00 2.24
37 38 3.814005 TTATCCGGAGAAGGCAAGTAC 57.186 47.619 11.34 0.00 0.00 2.73
38 39 1.867363 ATCCGGAGAAGGCAAGTACT 58.133 50.000 11.34 0.00 0.00 2.73
39 40 1.640917 TCCGGAGAAGGCAAGTACTT 58.359 50.000 0.00 1.12 0.00 2.24
40 41 1.549170 TCCGGAGAAGGCAAGTACTTC 59.451 52.381 4.77 0.93 43.56 3.01
41 42 1.275291 CCGGAGAAGGCAAGTACTTCA 59.725 52.381 4.77 0.00 45.18 3.02
42 43 2.289444 CCGGAGAAGGCAAGTACTTCAA 60.289 50.000 4.77 0.00 45.18 2.69
43 44 2.737252 CGGAGAAGGCAAGTACTTCAAC 59.263 50.000 4.77 0.00 45.18 3.18
44 45 3.555168 CGGAGAAGGCAAGTACTTCAACT 60.555 47.826 4.77 1.26 45.18 3.16
45 46 4.390264 GGAGAAGGCAAGTACTTCAACTT 58.610 43.478 4.77 10.06 45.18 2.66
53 54 4.931661 AAGTACTTCAACTTGTCCGAGA 57.068 40.909 1.12 0.00 38.28 4.04
54 55 4.931661 AGTACTTCAACTTGTCCGAGAA 57.068 40.909 0.00 0.00 0.00 2.87
55 56 5.272283 AGTACTTCAACTTGTCCGAGAAA 57.728 39.130 0.00 0.00 0.00 2.52
56 57 5.667466 AGTACTTCAACTTGTCCGAGAAAA 58.333 37.500 0.00 0.00 0.00 2.29
57 58 6.289064 AGTACTTCAACTTGTCCGAGAAAAT 58.711 36.000 0.00 0.00 0.00 1.82
136 137 8.554528 CAGTCTAATGTGCCAGTTGATAATAAG 58.445 37.037 0.00 0.00 0.00 1.73
147 149 8.147058 GCCAGTTGATAATAAGAGAAGATCTGA 58.853 37.037 0.00 0.00 38.67 3.27
222 225 9.751542 CGTGGAGTCATTCTTACTAAAGATAAT 57.248 33.333 0.00 0.00 41.36 1.28
464 467 1.609555 TGCCGTTATTTGGTCGCTTTT 59.390 42.857 0.00 0.00 0.00 2.27
465 468 2.034812 TGCCGTTATTTGGTCGCTTTTT 59.965 40.909 0.00 0.00 0.00 1.94
466 469 2.407026 GCCGTTATTTGGTCGCTTTTTG 59.593 45.455 0.00 0.00 0.00 2.44
467 470 3.854045 GCCGTTATTTGGTCGCTTTTTGA 60.854 43.478 0.00 0.00 0.00 2.69
475 478 5.600908 TTGGTCGCTTTTTGACTATGTAC 57.399 39.130 0.00 0.00 36.58 2.90
557 560 2.165845 CGGGACTCTTCGTTTATGGTCT 59.834 50.000 0.00 0.00 0.00 3.85
559 562 4.142315 CGGGACTCTTCGTTTATGGTCTTA 60.142 45.833 0.00 0.00 0.00 2.10
593 596 3.194968 TGGAGAATCGAGACCTGTTTACC 59.805 47.826 0.00 0.00 34.37 2.85
604 607 4.349930 AGACCTGTTTACCAAGGTGTGTAT 59.650 41.667 1.07 0.00 34.38 2.29
657 660 1.546589 CCAACATGGGTGGCAGCATT 61.547 55.000 19.48 1.60 32.67 3.56
748 757 8.951243 CCTCTTTTTATTTTTGGTTTTGGTGAA 58.049 29.630 0.00 0.00 0.00 3.18
757 766 6.607004 TTTGGTTTTGGTGAAAGGACTTTA 57.393 33.333 0.00 0.00 32.11 1.85
781 794 2.954989 TGTTTGGCTGTGTGCATCTTAA 59.045 40.909 0.00 0.00 45.15 1.85
792 805 7.225538 GCTGTGTGCATCTTAATTATGTAGAGT 59.774 37.037 0.00 0.00 42.31 3.24
796 809 7.145985 GTGCATCTTAATTATGTAGAGTCCGA 58.854 38.462 0.00 0.00 0.00 4.55
805 818 7.584122 ATTATGTAGAGTCCGAGTGTAATGT 57.416 36.000 0.00 0.00 0.00 2.71
812 825 6.756221 AGAGTCCGAGTGTAATGTTTAAACT 58.244 36.000 18.72 2.78 0.00 2.66
866 879 5.835113 AATAAACCATCGAGGGACAAATG 57.165 39.130 25.24 0.00 43.89 2.32
868 881 0.991920 ACCATCGAGGGACAAATGGT 59.008 50.000 25.24 10.41 45.44 3.55
872 890 3.370527 CCATCGAGGGACAAATGGTAGTT 60.371 47.826 11.55 0.00 35.08 2.24
877 895 4.514401 GAGGGACAAATGGTAGTTTCGAT 58.486 43.478 0.00 0.00 0.00 3.59
880 898 6.478129 AGGGACAAATGGTAGTTTCGATTTA 58.522 36.000 0.00 0.00 0.00 1.40
959 977 6.035435 CAGTGACATGAATCTTCCGAAGTAAG 59.965 42.308 8.01 0.00 0.00 2.34
1098 1118 4.463879 CTGAGGCCCGCACTCCTG 62.464 72.222 0.00 0.00 34.06 3.86
1314 1334 3.414700 GACACGCCGCTCCACTTG 61.415 66.667 0.00 0.00 0.00 3.16
1591 1611 5.680229 CGCGTTCTTATCAAGTCGTATAAGT 59.320 40.000 0.00 0.00 37.11 2.24
1622 1642 1.363744 GACGAAGATGAGGTGCCAAG 58.636 55.000 0.00 0.00 0.00 3.61
1836 1857 4.400884 TGGACTAGAGCTCAGTTGAGATTC 59.599 45.833 17.77 9.08 41.40 2.52
1849 1870 8.833231 TCAGTTGAGATTCGAAATTACTTCTT 57.167 30.769 0.00 0.00 31.20 2.52
1963 2040 5.009010 GGTTCTGCTCTGTTTGATTCTCAAA 59.991 40.000 0.00 0.00 43.37 2.69
1989 2069 3.570926 TCGAACAGTACCAACTAGCAG 57.429 47.619 0.00 0.00 33.48 4.24
2031 2111 2.758089 CGCATGGAGCAAGCTGTCC 61.758 63.158 0.00 3.51 46.13 4.02
2039 2119 0.036875 AGCAAGCTGTCCAGGGTAAC 59.963 55.000 0.00 0.00 0.00 2.50
2066 3389 1.148498 GGGCTAGTGGGGTATGTGC 59.852 63.158 0.00 0.00 0.00 4.57
2188 3511 3.119101 ACGCACTAGAGTTTGGGATAGTG 60.119 47.826 0.00 6.81 45.07 2.74
2256 3582 8.691661 ATATGCAAAAAGAACCTATATTCCGT 57.308 30.769 0.00 0.00 0.00 4.69
2300 3626 9.466497 GTATGGAATGATGGAAATGTATACCAT 57.534 33.333 0.00 0.00 45.50 3.55
2338 3664 5.659440 TGGGAATTTTCCTGAAGTAATGC 57.341 39.130 9.13 0.00 46.72 3.56
2548 3881 7.856145 TGTAAACTGCAATTCAAACCAAAAT 57.144 28.000 0.00 0.00 0.00 1.82
2585 3918 4.184629 GGTATTCGCTGTGACTTCTGAAT 58.815 43.478 0.00 0.00 0.00 2.57
2749 4082 6.717289 TGGTAACTATACAGTTTTCCTGCAT 58.283 36.000 0.00 0.00 42.51 3.96
2750 4083 7.172342 TGGTAACTATACAGTTTTCCTGCATT 58.828 34.615 0.00 0.00 42.51 3.56
2751 4084 7.668052 TGGTAACTATACAGTTTTCCTGCATTT 59.332 33.333 0.00 0.00 42.51 2.32
2752 4085 8.520351 GGTAACTATACAGTTTTCCTGCATTTT 58.480 33.333 0.00 0.00 42.51 1.82
2753 4086 9.908152 GTAACTATACAGTTTTCCTGCATTTTT 57.092 29.630 0.00 0.00 42.51 1.94
2775 4108 4.586306 TTTTAGAAATGGAGGAGGACCC 57.414 45.455 0.00 0.00 36.73 4.46
2776 4109 2.191981 TAGAAATGGAGGAGGACCCC 57.808 55.000 0.00 0.00 36.73 4.95
2777 4110 0.983378 AGAAATGGAGGAGGACCCCG 60.983 60.000 0.00 0.00 36.73 5.73
2778 4111 1.984288 GAAATGGAGGAGGACCCCGG 61.984 65.000 0.00 0.00 36.73 5.73
2779 4112 4.499116 ATGGAGGAGGACCCCGGG 62.499 72.222 15.80 15.80 36.73 5.73
2793 4126 1.224592 CCGGGGCTCTGCATTTACT 59.775 57.895 0.00 0.00 0.00 2.24
2846 4179 1.987770 GCATCAAACCACAAGCATTCG 59.012 47.619 0.00 0.00 0.00 3.34
3221 4554 1.299648 CCCACACGACCATGGTGAT 59.700 57.895 25.52 6.92 38.73 3.06
3279 4612 3.103213 ACAACCACCACCAGGGCT 61.103 61.111 0.00 0.00 42.05 5.19
3733 5066 1.374190 GGCAGATCCATCGAGCCAT 59.626 57.895 16.59 0.00 45.73 4.40
4494 5827 4.179599 GGGAGGGGAGGGGAGGAG 62.180 77.778 0.00 0.00 0.00 3.69
4495 5828 3.036959 GGAGGGGAGGGGAGGAGA 61.037 72.222 0.00 0.00 0.00 3.71
4496 5829 2.612251 GAGGGGAGGGGAGGAGAG 59.388 72.222 0.00 0.00 0.00 3.20
4497 5830 3.039526 AGGGGAGGGGAGGAGAGG 61.040 72.222 0.00 0.00 0.00 3.69
4498 5831 4.179599 GGGGAGGGGAGGAGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
4499 5832 4.179599 GGGAGGGGAGGAGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
4500 5833 4.179599 GGAGGGGAGGAGAGGGGG 62.180 77.778 0.00 0.00 0.00 5.40
4593 5926 3.539842 GGAGGAACCCTAGCGGAG 58.460 66.667 4.45 0.00 31.76 4.63
4594 5927 2.798364 GGAGGAACCCTAGCGGAGC 61.798 68.421 4.45 0.00 46.23 4.70
4623 5956 4.097361 GGGGTCCTCCGTGCCTTC 62.097 72.222 0.00 0.00 36.01 3.46
4624 5957 3.003763 GGGTCCTCCGTGCCTTCT 61.004 66.667 0.00 0.00 33.83 2.85
4625 5958 2.579738 GGTCCTCCGTGCCTTCTC 59.420 66.667 0.00 0.00 0.00 2.87
4626 5959 2.182030 GTCCTCCGTGCCTTCTCG 59.818 66.667 0.00 0.00 0.00 4.04
4627 5960 2.035155 TCCTCCGTGCCTTCTCGA 59.965 61.111 0.00 0.00 0.00 4.04
4628 5961 2.046864 TCCTCCGTGCCTTCTCGAG 61.047 63.158 5.93 5.93 0.00 4.04
4641 5974 3.499157 CCTTCTCGAGGTAAGATACTCCG 59.501 52.174 13.56 0.00 40.95 4.63
4642 5975 2.492012 TCTCGAGGTAAGATACTCCGC 58.508 52.381 13.56 0.00 0.00 5.54
4643 5976 1.194997 CTCGAGGTAAGATACTCCGCG 59.805 57.143 3.91 0.00 43.61 6.46
4644 5977 0.385723 CGAGGTAAGATACTCCGCGC 60.386 60.000 0.00 0.00 37.66 6.86
4645 5978 0.039346 GAGGTAAGATACTCCGCGCC 60.039 60.000 0.00 0.00 0.00 6.53
4646 5979 1.006454 GGTAAGATACTCCGCGCCC 60.006 63.158 0.00 0.00 0.00 6.13
4647 5980 1.737816 GTAAGATACTCCGCGCCCA 59.262 57.895 0.00 0.00 0.00 5.36
4648 5981 0.596859 GTAAGATACTCCGCGCCCAC 60.597 60.000 0.00 0.00 0.00 4.61
4649 5982 2.067091 TAAGATACTCCGCGCCCACG 62.067 60.000 0.00 0.00 44.07 4.94
4650 5983 3.896133 GATACTCCGCGCCCACGA 61.896 66.667 0.00 0.00 43.93 4.35
4651 5984 3.208884 GATACTCCGCGCCCACGAT 62.209 63.158 0.00 0.00 43.93 3.73
4652 5985 1.859427 GATACTCCGCGCCCACGATA 61.859 60.000 0.00 0.00 43.93 2.92
4666 5999 0.681733 ACGATATCGGGCTCTGCATT 59.318 50.000 27.58 0.91 44.95 3.56
4697 6030 5.350633 TGCATGCAGCCACTTTATTAATTC 58.649 37.500 18.46 0.00 44.83 2.17
4733 6066 8.967664 ACCTTACAAAGTCATACAACAGTAAA 57.032 30.769 0.00 0.00 0.00 2.01
4766 6099 3.131396 CGTCTAGGCAACAAAAGTGTCT 58.869 45.455 0.00 0.00 36.80 3.41
4813 6147 1.709578 TGCTGATAGTCTGGGCCTAG 58.290 55.000 10.47 10.47 0.00 3.02
5116 6451 2.501128 CCATCGTGATCCGCCACT 59.499 61.111 0.00 0.00 35.02 4.00
5145 6482 2.125552 TGATGAAGCACCGCTCCG 60.126 61.111 0.00 0.00 38.25 4.63
5190 6527 1.678970 GCTCCAAAACGATGCCCCT 60.679 57.895 0.00 0.00 0.00 4.79
5196 6535 2.421388 CCAAAACGATGCCCCTATGAGA 60.421 50.000 0.00 0.00 0.00 3.27
5200 6539 1.689273 ACGATGCCCCTATGAGAGAAC 59.311 52.381 0.00 0.00 0.00 3.01
5420 6760 1.360551 CGTCGCTGATCCCTTCGAT 59.639 57.895 0.00 0.00 33.37 3.59
5462 6806 0.736325 CCCTGAAGGTTACGACGCAG 60.736 60.000 0.00 0.00 0.00 5.18
5640 6990 2.764128 GCCTGGACCCAGATCCGA 60.764 66.667 17.19 0.00 46.30 4.55
5880 7315 4.933064 GAGTCCGGCGGCGATCTG 62.933 72.222 34.49 16.30 0.00 2.90
5892 7327 2.780094 CGATCTGGTCGCCTGCTCT 61.780 63.158 0.00 0.00 44.33 4.09
5895 7330 4.383861 CTGGTCGCCTGCTCTGCA 62.384 66.667 0.00 0.00 36.92 4.41
5908 7343 4.597404 TGCTCTGCAGATCCTACTAATG 57.403 45.455 18.63 2.16 33.32 1.90
5909 7344 3.963374 TGCTCTGCAGATCCTACTAATGT 59.037 43.478 18.63 0.00 33.32 2.71
5910 7345 4.406972 TGCTCTGCAGATCCTACTAATGTT 59.593 41.667 18.63 0.00 33.32 2.71
5912 7347 5.537188 CTCTGCAGATCCTACTAATGTTCC 58.463 45.833 18.63 0.00 0.00 3.62
5913 7348 5.211973 TCTGCAGATCCTACTAATGTTCCT 58.788 41.667 13.74 0.00 0.00 3.36
5914 7349 5.663106 TCTGCAGATCCTACTAATGTTCCTT 59.337 40.000 13.74 0.00 0.00 3.36
5915 7350 6.156949 TCTGCAGATCCTACTAATGTTCCTTT 59.843 38.462 13.74 0.00 0.00 3.11
5916 7351 6.349300 TGCAGATCCTACTAATGTTCCTTTC 58.651 40.000 0.00 0.00 0.00 2.62
5917 7352 6.156949 TGCAGATCCTACTAATGTTCCTTTCT 59.843 38.462 0.00 0.00 0.00 2.52
5918 7353 7.051000 GCAGATCCTACTAATGTTCCTTTCTT 58.949 38.462 0.00 0.00 0.00 2.52
5933 7370 6.165742 TCCTTTCTTATTGGGGGAGAATTT 57.834 37.500 0.00 0.00 30.26 1.82
5956 7397 0.036732 TTGGCCTCTGCACCAACTAG 59.963 55.000 3.32 0.00 40.98 2.57
5969 7410 1.512926 CAACTAGGGATGCATACGGC 58.487 55.000 1.96 0.00 45.13 5.68
5971 7412 0.762842 ACTAGGGATGCATACGGCCA 60.763 55.000 2.24 0.00 43.89 5.36
5975 7416 1.039856 GGGATGCATACGGCCATTTT 58.960 50.000 2.24 0.00 43.89 1.82
5987 7428 4.700700 ACGGCCATTTTAGTATGAGTACC 58.299 43.478 2.24 0.00 0.00 3.34
5993 7434 8.154856 GGCCATTTTAGTATGAGTACCAAGATA 58.845 37.037 0.00 0.00 0.00 1.98
5994 7435 9.555727 GCCATTTTAGTATGAGTACCAAGATAA 57.444 33.333 0.00 0.00 0.00 1.75
6002 7443 8.204836 AGTATGAGTACCAAGATAAACATGGTC 58.795 37.037 0.00 0.00 45.86 4.02
6003 7444 5.741011 TGAGTACCAAGATAAACATGGTCC 58.259 41.667 0.00 0.00 45.86 4.46
6004 7445 5.487488 TGAGTACCAAGATAAACATGGTCCT 59.513 40.000 0.00 0.00 45.86 3.85
6005 7446 5.990668 AGTACCAAGATAAACATGGTCCTC 58.009 41.667 0.00 0.00 45.86 3.71
6006 7447 4.927267 ACCAAGATAAACATGGTCCTCA 57.073 40.909 0.00 0.00 45.86 3.86
6007 7448 4.848357 ACCAAGATAAACATGGTCCTCAG 58.152 43.478 0.00 0.00 45.86 3.35
6008 7449 4.536090 ACCAAGATAAACATGGTCCTCAGA 59.464 41.667 0.00 0.00 45.86 3.27
6009 7450 5.014123 ACCAAGATAAACATGGTCCTCAGAA 59.986 40.000 0.00 0.00 45.86 3.02
6010 7451 6.125029 CCAAGATAAACATGGTCCTCAGAAT 58.875 40.000 0.00 0.00 33.27 2.40
6011 7452 6.604795 CCAAGATAAACATGGTCCTCAGAATT 59.395 38.462 0.00 0.00 33.27 2.17
6012 7453 7.123247 CCAAGATAAACATGGTCCTCAGAATTT 59.877 37.037 0.00 0.00 33.27 1.82
6013 7454 8.526147 CAAGATAAACATGGTCCTCAGAATTTT 58.474 33.333 0.00 0.00 0.00 1.82
6014 7455 8.655935 AGATAAACATGGTCCTCAGAATTTTT 57.344 30.769 0.00 0.00 0.00 1.94
6062 7503 3.416351 TGGTTCCACCACACACCA 58.584 55.556 0.00 0.00 44.79 4.17
6063 7504 1.691823 TGGTTCCACCACACACCAA 59.308 52.632 0.00 0.00 44.79 3.67
6064 7505 0.039764 TGGTTCCACCACACACCAAA 59.960 50.000 0.00 0.00 44.79 3.28
6065 7506 0.458260 GGTTCCACCACACACCAAAC 59.542 55.000 0.00 0.00 38.42 2.93
6066 7507 1.470051 GTTCCACCACACACCAAACT 58.530 50.000 0.00 0.00 0.00 2.66
6067 7508 1.822371 GTTCCACCACACACCAAACTT 59.178 47.619 0.00 0.00 0.00 2.66
6068 7509 1.468985 TCCACCACACACCAAACTTG 58.531 50.000 0.00 0.00 0.00 3.16
6069 7510 1.004862 TCCACCACACACCAAACTTGA 59.995 47.619 0.00 0.00 0.00 3.02
6070 7511 2.031120 CCACCACACACCAAACTTGAT 58.969 47.619 0.00 0.00 0.00 2.57
6071 7512 2.034558 CCACCACACACCAAACTTGATC 59.965 50.000 0.00 0.00 0.00 2.92
6072 7513 2.034558 CACCACACACCAAACTTGATCC 59.965 50.000 0.00 0.00 0.00 3.36
6073 7514 2.091885 ACCACACACCAAACTTGATCCT 60.092 45.455 0.00 0.00 0.00 3.24
6074 7515 2.554032 CCACACACCAAACTTGATCCTC 59.446 50.000 0.00 0.00 0.00 3.71
6075 7516 3.213506 CACACACCAAACTTGATCCTCA 58.786 45.455 0.00 0.00 0.00 3.86
6076 7517 3.631686 CACACACCAAACTTGATCCTCAA 59.368 43.478 0.00 0.00 34.79 3.02
6077 7518 4.279169 CACACACCAAACTTGATCCTCAAT 59.721 41.667 0.00 0.00 35.59 2.57
6078 7519 5.473162 CACACACCAAACTTGATCCTCAATA 59.527 40.000 0.00 0.00 35.59 1.90
6079 7520 6.016360 CACACACCAAACTTGATCCTCAATAA 60.016 38.462 0.00 0.00 35.59 1.40
6080 7521 6.549364 ACACACCAAACTTGATCCTCAATAAA 59.451 34.615 0.00 0.00 35.59 1.40
6081 7522 7.233348 ACACACCAAACTTGATCCTCAATAAAT 59.767 33.333 0.00 0.00 35.59 1.40
6082 7523 7.543172 CACACCAAACTTGATCCTCAATAAATG 59.457 37.037 0.00 0.00 35.59 2.32
6083 7524 7.037438 CACCAAACTTGATCCTCAATAAATGG 58.963 38.462 0.00 0.00 35.59 3.16
6084 7525 6.155049 ACCAAACTTGATCCTCAATAAATGGG 59.845 38.462 12.02 0.00 35.59 4.00
6094 7535 5.598416 CTCAATAAATGGGGGAAAACTCC 57.402 43.478 0.00 0.00 0.00 3.85
6101 7542 4.415783 GGGAAAACTCCCGTGCAT 57.584 55.556 0.00 0.00 40.59 3.96
6102 7543 2.180674 GGGAAAACTCCCGTGCATC 58.819 57.895 0.00 0.00 40.59 3.91
6103 7544 0.608035 GGGAAAACTCCCGTGCATCA 60.608 55.000 0.00 0.00 40.59 3.07
6104 7545 0.521735 GGAAAACTCCCGTGCATCAC 59.478 55.000 0.00 0.00 0.00 3.06
6105 7546 0.521735 GAAAACTCCCGTGCATCACC 59.478 55.000 0.00 0.00 0.00 4.02
6106 7547 0.110486 AAAACTCCCGTGCATCACCT 59.890 50.000 0.00 0.00 0.00 4.00
6107 7548 0.606401 AAACTCCCGTGCATCACCTG 60.606 55.000 0.00 0.00 0.00 4.00
6108 7549 1.768684 AACTCCCGTGCATCACCTGT 61.769 55.000 0.00 0.00 0.00 4.00
6109 7550 1.448540 CTCCCGTGCATCACCTGTC 60.449 63.158 0.00 0.00 0.00 3.51
6110 7551 2.171209 CTCCCGTGCATCACCTGTCA 62.171 60.000 0.00 0.00 0.00 3.58
6111 7552 1.302431 CCCGTGCATCACCTGTCAA 60.302 57.895 0.00 0.00 0.00 3.18
6112 7553 0.677731 CCCGTGCATCACCTGTCAAT 60.678 55.000 0.00 0.00 0.00 2.57
6113 7554 1.167851 CCGTGCATCACCTGTCAATT 58.832 50.000 0.00 0.00 0.00 2.32
6114 7555 1.131126 CCGTGCATCACCTGTCAATTC 59.869 52.381 0.00 0.00 0.00 2.17
6115 7556 2.079158 CGTGCATCACCTGTCAATTCT 58.921 47.619 0.00 0.00 0.00 2.40
6116 7557 3.261580 CGTGCATCACCTGTCAATTCTA 58.738 45.455 0.00 0.00 0.00 2.10
6117 7558 3.308053 CGTGCATCACCTGTCAATTCTAG 59.692 47.826 0.00 0.00 0.00 2.43
6118 7559 3.624861 GTGCATCACCTGTCAATTCTAGG 59.375 47.826 0.00 0.00 37.61 3.02
6119 7560 3.519107 TGCATCACCTGTCAATTCTAGGA 59.481 43.478 6.24 0.00 35.55 2.94
6120 7561 4.019411 TGCATCACCTGTCAATTCTAGGAA 60.019 41.667 6.24 0.00 35.55 3.36
6121 7562 5.128919 GCATCACCTGTCAATTCTAGGAAT 58.871 41.667 6.24 0.00 35.55 3.01
6122 7563 5.591877 GCATCACCTGTCAATTCTAGGAATT 59.408 40.000 6.24 0.31 35.55 2.17
6123 7564 6.459298 GCATCACCTGTCAATTCTAGGAATTG 60.459 42.308 20.45 20.45 38.60 2.32
6124 7565 6.373005 TCACCTGTCAATTCTAGGAATTGA 57.627 37.500 23.36 23.36 42.44 2.57
6125 7566 6.778821 TCACCTGTCAATTCTAGGAATTGAA 58.221 36.000 26.66 18.77 45.06 2.69
6126 7567 6.655003 TCACCTGTCAATTCTAGGAATTGAAC 59.345 38.462 26.66 21.66 45.06 3.18
6127 7568 6.656693 CACCTGTCAATTCTAGGAATTGAACT 59.343 38.462 26.66 13.22 45.06 3.01
6128 7569 6.881602 ACCTGTCAATTCTAGGAATTGAACTC 59.118 38.462 26.66 18.75 45.06 3.01
6129 7570 6.036517 CCTGTCAATTCTAGGAATTGAACTCG 59.963 42.308 26.66 17.94 45.06 4.18
6130 7571 5.874810 TGTCAATTCTAGGAATTGAACTCGG 59.125 40.000 26.66 7.30 45.06 4.63
6131 7572 5.294552 GTCAATTCTAGGAATTGAACTCGGG 59.705 44.000 26.66 6.75 45.06 5.14
6132 7573 5.045869 TCAATTCTAGGAATTGAACTCGGGT 60.046 40.000 24.34 0.00 41.92 5.28
6133 7574 4.467198 TTCTAGGAATTGAACTCGGGTC 57.533 45.455 0.00 0.00 0.00 4.46
6134 7575 2.426024 TCTAGGAATTGAACTCGGGTCG 59.574 50.000 0.00 0.00 0.00 4.79
6135 7576 0.974383 AGGAATTGAACTCGGGTCGT 59.026 50.000 0.00 0.00 0.00 4.34
6136 7577 1.346722 AGGAATTGAACTCGGGTCGTT 59.653 47.619 0.00 0.00 0.00 3.85
6137 7578 2.564062 AGGAATTGAACTCGGGTCGTTA 59.436 45.455 0.00 0.00 0.00 3.18
6138 7579 2.928116 GGAATTGAACTCGGGTCGTTAG 59.072 50.000 0.00 0.00 0.00 2.34
6139 7580 2.667473 ATTGAACTCGGGTCGTTAGG 57.333 50.000 0.00 0.00 0.00 2.69
6140 7581 0.037975 TTGAACTCGGGTCGTTAGGC 60.038 55.000 0.00 0.00 0.00 3.93
6141 7582 0.896940 TGAACTCGGGTCGTTAGGCT 60.897 55.000 0.00 0.00 0.00 4.58
6142 7583 0.458025 GAACTCGGGTCGTTAGGCTG 60.458 60.000 0.00 0.00 0.00 4.85
6143 7584 2.202756 CTCGGGTCGTTAGGCTGC 60.203 66.667 0.00 0.00 0.00 5.25
6144 7585 2.992689 TCGGGTCGTTAGGCTGCA 60.993 61.111 0.50 0.00 0.00 4.41
6145 7586 2.813908 CGGGTCGTTAGGCTGCAC 60.814 66.667 0.50 0.00 0.00 4.57
6146 7587 2.345991 GGGTCGTTAGGCTGCACA 59.654 61.111 0.50 0.00 0.00 4.57
6147 7588 1.302192 GGGTCGTTAGGCTGCACAA 60.302 57.895 0.50 0.00 0.00 3.33
6148 7589 1.574702 GGGTCGTTAGGCTGCACAAC 61.575 60.000 0.50 3.77 0.00 3.32
6149 7590 1.574702 GGTCGTTAGGCTGCACAACC 61.575 60.000 0.50 0.00 0.00 3.77
6150 7591 1.666553 TCGTTAGGCTGCACAACCG 60.667 57.895 0.50 0.00 0.00 4.44
6151 7592 2.561373 GTTAGGCTGCACAACCGC 59.439 61.111 0.50 0.00 0.00 5.68
6152 7593 2.112087 TTAGGCTGCACAACCGCA 59.888 55.556 0.50 0.00 40.32 5.69
6153 7594 1.303236 TTAGGCTGCACAACCGCAT 60.303 52.632 0.50 0.00 42.06 4.73
6154 7595 1.585267 TTAGGCTGCACAACCGCATG 61.585 55.000 0.50 0.00 42.06 4.06
6157 7598 4.424566 CTGCACAACCGCATGCCC 62.425 66.667 13.15 0.00 42.06 5.36
6159 7600 3.988525 GCACAACCGCATGCCCAA 61.989 61.111 13.15 0.00 35.73 4.12
6160 7601 2.049248 CACAACCGCATGCCCAAC 60.049 61.111 13.15 0.00 0.00 3.77
6161 7602 3.302344 ACAACCGCATGCCCAACC 61.302 61.111 13.15 0.00 0.00 3.77
6162 7603 3.301554 CAACCGCATGCCCAACCA 61.302 61.111 13.15 0.00 0.00 3.67
6163 7604 3.302344 AACCGCATGCCCAACCAC 61.302 61.111 13.15 0.00 0.00 4.16
6164 7605 3.808218 AACCGCATGCCCAACCACT 62.808 57.895 13.15 0.00 0.00 4.00
6165 7606 3.751246 CCGCATGCCCAACCACTG 61.751 66.667 13.15 0.00 0.00 3.66
6166 7607 2.672651 CGCATGCCCAACCACTGA 60.673 61.111 13.15 0.00 0.00 3.41
6167 7608 2.693762 CGCATGCCCAACCACTGAG 61.694 63.158 13.15 0.00 0.00 3.35
6168 7609 2.998279 GCATGCCCAACCACTGAGC 61.998 63.158 6.36 0.00 0.00 4.26
6169 7610 2.036256 ATGCCCAACCACTGAGCC 59.964 61.111 0.00 0.00 0.00 4.70
6170 7611 2.844195 ATGCCCAACCACTGAGCCA 61.844 57.895 0.00 0.00 0.00 4.75
6171 7612 2.203480 GCCCAACCACTGAGCCAA 60.203 61.111 0.00 0.00 0.00 4.52
6172 7613 2.270986 GCCCAACCACTGAGCCAAG 61.271 63.158 0.00 0.00 0.00 3.61
6173 7614 1.604593 CCCAACCACTGAGCCAAGG 60.605 63.158 0.00 0.00 0.00 3.61
6174 7615 2.270986 CCAACCACTGAGCCAAGGC 61.271 63.158 2.02 2.02 42.33 4.35
6337 7894 7.095439 CCTCAGAACTCTGTTCATCTTTGTAAC 60.095 40.741 12.16 0.00 44.12 2.50
6514 8071 8.703336 CACGTTGAATATCCTGTGAATATGTAG 58.297 37.037 0.00 0.00 0.00 2.74
6516 8073 9.476202 CGTTGAATATCCTGTGAATATGTAGAA 57.524 33.333 0.00 0.00 0.00 2.10
6551 8113 5.956642 TCTTCAAAACACAACAAGGGTTAC 58.043 37.500 0.00 0.00 44.99 2.50
6758 8802 2.231964 TGCATCTGCTGGAAACATTTCC 59.768 45.455 15.28 15.28 46.50 3.13
6804 8848 6.931790 ATGATACTTCTCCAGCATATGTCT 57.068 37.500 4.29 0.00 0.00 3.41
6818 8862 5.768662 AGCATATGTCTCAGATTCAAATGGG 59.231 40.000 4.29 0.00 0.00 4.00
6857 8901 1.341209 GCTGCTAAAATGGGGTATGGC 59.659 52.381 0.00 0.00 0.00 4.40
6860 8904 1.963515 GCTAAAATGGGGTATGGCCAG 59.036 52.381 13.05 0.00 39.65 4.85
6995 9039 1.599047 CTGTGGTACCCCAGAGCTG 59.401 63.158 18.73 0.00 44.34 4.24
7076 9120 4.958509 AGAATGCAGACCAGATGATAGTG 58.041 43.478 0.00 0.00 0.00 2.74
7232 9276 7.121168 CCAAATCTATTCTTCTTGGCACAGTTA 59.879 37.037 0.00 0.00 42.39 2.24
7237 9281 4.503741 TCTTCTTGGCACAGTTAAATGC 57.496 40.909 2.17 0.97 42.39 3.56
7240 9284 2.621055 TCTTGGCACAGTTAAATGCGTT 59.379 40.909 2.17 0.00 43.02 4.84
7518 9562 1.538419 GCAGTATTCACTCTACCCGGC 60.538 57.143 0.00 0.00 30.46 6.13
7784 9828 2.846193 TGTTGTCTTGAGCCCAGTTAC 58.154 47.619 0.00 0.00 0.00 2.50
7830 9874 3.502595 GCATGTCTACCATCGCTACTCTA 59.497 47.826 0.00 0.00 0.00 2.43
7971 10015 4.058817 CAGTAGGTATCGGCTCCAATTTC 58.941 47.826 0.00 0.00 0.00 2.17
8048 10092 9.823098 CATCTTTCTATTAGCATTGCTATGAAC 57.177 33.333 18.62 0.00 41.01 3.18
8199 10247 3.390967 TCAAGAGTCTCCAATGGTGTGAA 59.609 43.478 0.00 0.00 0.00 3.18
8233 10289 2.849942 CGTGCAAGGGATATCCAATGA 58.150 47.619 23.27 8.54 38.24 2.57
8364 10443 2.411904 CTCCAACTTCTCTCACACTGC 58.588 52.381 0.00 0.00 0.00 4.40
8433 10512 7.575414 TTCTGAATCTACTTTATCTCTCGCT 57.425 36.000 0.00 0.00 0.00 4.93
8492 10572 8.181904 AGTTCCAAAACATGATGAAACTGTAT 57.818 30.769 0.00 0.00 37.88 2.29
8606 10686 7.349711 ACGAATTTATAATAAACATTCGCGCT 58.650 30.769 20.93 6.92 46.50 5.92
8620 10700 4.994220 TTCGCGCTTATCAAGTTTTACA 57.006 36.364 5.56 0.00 0.00 2.41
8636 10716 8.370321 CAAGTTTTACAAGGTTTTCTCGTTTTC 58.630 33.333 0.00 0.00 0.00 2.29
8638 10718 8.949177 AGTTTTACAAGGTTTTCTCGTTTTCTA 58.051 29.630 0.00 0.00 0.00 2.10
8639 10719 9.218359 GTTTTACAAGGTTTTCTCGTTTTCTAG 57.782 33.333 0.00 0.00 0.00 2.43
8660 10740 7.539436 TCTAGAGTGTATCACTGTGTTTCATC 58.461 38.462 7.79 4.44 45.44 2.92
8903 10984 4.804868 TGTCTTTGCATTACATGGCATT 57.195 36.364 0.00 0.00 40.17 3.56
8909 10990 7.973388 GTCTTTGCATTACATGGCATTAGTTTA 59.027 33.333 0.00 0.00 40.17 2.01
8937 11018 4.142315 CGAAGGATCAAGGGTAACTAACGA 60.142 45.833 0.00 0.00 0.00 3.85
8942 11023 2.629137 TCAAGGGTAACTAACGAGTGCA 59.371 45.455 0.00 0.00 35.52 4.57
8962 11044 5.566774 GTGCAAAGATCGTCATTGAGAAAAG 59.433 40.000 0.00 0.00 27.31 2.27
8963 11045 5.091431 GCAAAGATCGTCATTGAGAAAAGG 58.909 41.667 7.01 0.00 27.31 3.11
8964 11046 5.634896 CAAAGATCGTCATTGAGAAAAGGG 58.365 41.667 0.00 0.00 27.31 3.95
8965 11047 4.826274 AGATCGTCATTGAGAAAAGGGA 57.174 40.909 0.00 0.00 0.00 4.20
8966 11048 4.508662 AGATCGTCATTGAGAAAAGGGAC 58.491 43.478 0.00 0.00 0.00 4.46
8967 11049 3.762407 TCGTCATTGAGAAAAGGGACA 57.238 42.857 0.00 0.00 0.00 4.02
8968 11050 4.079980 TCGTCATTGAGAAAAGGGACAA 57.920 40.909 0.00 0.00 0.00 3.18
8969 11051 4.065088 TCGTCATTGAGAAAAGGGACAAG 58.935 43.478 0.00 0.00 0.00 3.16
8970 11052 3.815401 CGTCATTGAGAAAAGGGACAAGT 59.185 43.478 0.00 0.00 0.00 3.16
8971 11053 4.994852 CGTCATTGAGAAAAGGGACAAGTA 59.005 41.667 0.00 0.00 0.00 2.24
8972 11054 5.643777 CGTCATTGAGAAAAGGGACAAGTAT 59.356 40.000 0.00 0.00 0.00 2.12
8973 11055 6.816640 CGTCATTGAGAAAAGGGACAAGTATA 59.183 38.462 0.00 0.00 0.00 1.47
8974 11056 7.495934 CGTCATTGAGAAAAGGGACAAGTATAT 59.504 37.037 0.00 0.00 0.00 0.86
8975 11057 9.178758 GTCATTGAGAAAAGGGACAAGTATATT 57.821 33.333 0.00 0.00 0.00 1.28
8976 11058 9.753674 TCATTGAGAAAAGGGACAAGTATATTT 57.246 29.630 0.00 0.00 0.00 1.40
8980 11062 8.726988 TGAGAAAAGGGACAAGTATATTTTTCG 58.273 33.333 0.00 0.00 37.83 3.46
8981 11063 8.631480 AGAAAAGGGACAAGTATATTTTTCGT 57.369 30.769 0.00 0.00 37.83 3.85
8982 11064 8.727910 AGAAAAGGGACAAGTATATTTTTCGTC 58.272 33.333 0.00 0.00 37.83 4.20
8983 11065 6.997239 AAGGGACAAGTATATTTTTCGTCC 57.003 37.500 7.19 7.19 40.58 4.79
8984 11066 6.309389 AGGGACAAGTATATTTTTCGTCCT 57.691 37.500 12.70 2.65 40.99 3.85
8985 11067 6.346896 AGGGACAAGTATATTTTTCGTCCTC 58.653 40.000 12.70 6.31 40.99 3.71
8986 11068 5.233689 GGGACAAGTATATTTTTCGTCCTCG 59.766 44.000 12.70 0.00 40.99 4.63
8987 11069 6.038356 GGACAAGTATATTTTTCGTCCTCGA 58.962 40.000 8.08 0.00 44.66 4.04
9011 11093 5.169295 ACTCTTTCGGGAGTTTAGAAATCG 58.831 41.667 0.00 0.00 43.14 3.34
9012 11094 5.143376 TCTTTCGGGAGTTTAGAAATCGT 57.857 39.130 0.00 0.00 34.00 3.73
9013 11095 5.166398 TCTTTCGGGAGTTTAGAAATCGTC 58.834 41.667 0.00 0.00 34.00 4.20
9014 11096 3.515330 TCGGGAGTTTAGAAATCGTCC 57.485 47.619 0.00 0.00 0.00 4.79
9015 11097 2.167075 TCGGGAGTTTAGAAATCGTCCC 59.833 50.000 8.83 8.83 40.38 4.46
9016 11098 2.167900 CGGGAGTTTAGAAATCGTCCCT 59.832 50.000 13.83 0.00 41.45 4.20
9017 11099 3.737355 CGGGAGTTTAGAAATCGTCCCTC 60.737 52.174 13.83 0.00 41.45 4.30
9018 11100 3.197116 GGGAGTTTAGAAATCGTCCCTCA 59.803 47.826 10.62 0.00 40.58 3.86
9019 11101 4.323257 GGGAGTTTAGAAATCGTCCCTCAA 60.323 45.833 10.62 0.00 40.58 3.02
9020 11102 4.630505 GGAGTTTAGAAATCGTCCCTCAAC 59.369 45.833 0.00 0.00 0.00 3.18
9021 11103 5.480205 GAGTTTAGAAATCGTCCCTCAACT 58.520 41.667 0.00 0.00 0.00 3.16
9022 11104 5.866207 AGTTTAGAAATCGTCCCTCAACTT 58.134 37.500 0.00 0.00 0.00 2.66
9023 11105 5.932883 AGTTTAGAAATCGTCCCTCAACTTC 59.067 40.000 0.00 0.00 0.00 3.01
9024 11106 5.477607 TTAGAAATCGTCCCTCAACTTCA 57.522 39.130 0.00 0.00 0.00 3.02
9025 11107 4.351874 AGAAATCGTCCCTCAACTTCAA 57.648 40.909 0.00 0.00 0.00 2.69
9026 11108 4.714632 AGAAATCGTCCCTCAACTTCAAA 58.285 39.130 0.00 0.00 0.00 2.69
9027 11109 4.515567 AGAAATCGTCCCTCAACTTCAAAC 59.484 41.667 0.00 0.00 0.00 2.93
9028 11110 2.249844 TCGTCCCTCAACTTCAAACC 57.750 50.000 0.00 0.00 0.00 3.27
9029 11111 0.865769 CGTCCCTCAACTTCAAACCG 59.134 55.000 0.00 0.00 0.00 4.44
9030 11112 1.235724 GTCCCTCAACTTCAAACCGG 58.764 55.000 0.00 0.00 0.00 5.28
9031 11113 1.133363 TCCCTCAACTTCAAACCGGA 58.867 50.000 9.46 0.00 0.00 5.14
9032 11114 1.702957 TCCCTCAACTTCAAACCGGAT 59.297 47.619 9.46 0.00 0.00 4.18
9033 11115 2.907696 TCCCTCAACTTCAAACCGGATA 59.092 45.455 9.46 0.00 0.00 2.59
9034 11116 3.055385 TCCCTCAACTTCAAACCGGATAG 60.055 47.826 9.46 0.00 0.00 2.08
9035 11117 3.307480 CCCTCAACTTCAAACCGGATAGT 60.307 47.826 9.46 0.00 0.00 2.12
9036 11118 4.324267 CCTCAACTTCAAACCGGATAGTT 58.676 43.478 9.46 0.00 0.00 2.24
9037 11119 4.760204 CCTCAACTTCAAACCGGATAGTTT 59.240 41.667 9.46 0.00 40.57 2.66
9038 11120 5.240844 CCTCAACTTCAAACCGGATAGTTTT 59.759 40.000 9.46 0.00 37.87 2.43
9039 11121 6.308371 TCAACTTCAAACCGGATAGTTTTC 57.692 37.500 9.46 0.00 37.87 2.29
9040 11122 5.049954 TCAACTTCAAACCGGATAGTTTTCG 60.050 40.000 9.46 0.00 37.87 3.46
9041 11123 4.383173 ACTTCAAACCGGATAGTTTTCGT 58.617 39.130 9.46 0.00 37.87 3.85
9042 11124 4.450080 ACTTCAAACCGGATAGTTTTCGTC 59.550 41.667 9.46 0.00 37.87 4.20
9043 11125 3.328505 TCAAACCGGATAGTTTTCGTCC 58.671 45.455 9.46 0.00 37.87 4.79
9044 11126 2.391616 AACCGGATAGTTTTCGTCCC 57.608 50.000 9.46 0.00 0.00 4.46
9045 11127 1.565067 ACCGGATAGTTTTCGTCCCT 58.435 50.000 9.46 0.00 0.00 4.20
9046 11128 1.479730 ACCGGATAGTTTTCGTCCCTC 59.520 52.381 9.46 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.196971 GGATAAATACGCCACTTCAACCT 58.803 43.478 0.00 0.00 0.00 3.50
1 2 3.001939 CGGATAAATACGCCACTTCAACC 59.998 47.826 0.00 0.00 0.00 3.77
2 3 3.001939 CCGGATAAATACGCCACTTCAAC 59.998 47.826 0.00 0.00 31.29 3.18
4 5 2.431419 TCCGGATAAATACGCCACTTCA 59.569 45.455 0.00 0.00 31.29 3.02
5 6 3.057734 CTCCGGATAAATACGCCACTTC 58.942 50.000 3.57 0.00 31.29 3.01
6 7 2.696707 TCTCCGGATAAATACGCCACTT 59.303 45.455 3.57 0.00 31.29 3.16
7 8 2.313317 TCTCCGGATAAATACGCCACT 58.687 47.619 3.57 0.00 31.29 4.00
8 9 2.806608 TCTCCGGATAAATACGCCAC 57.193 50.000 3.57 0.00 31.29 5.01
9 10 2.036733 CCTTCTCCGGATAAATACGCCA 59.963 50.000 3.57 0.00 31.29 5.69
10 11 2.685100 CCTTCTCCGGATAAATACGCC 58.315 52.381 3.57 0.00 31.29 5.68
11 12 2.067013 GCCTTCTCCGGATAAATACGC 58.933 52.381 3.57 0.00 31.29 4.42
12 13 3.380479 TGCCTTCTCCGGATAAATACG 57.620 47.619 3.57 0.00 0.00 3.06
13 14 4.704965 ACTTGCCTTCTCCGGATAAATAC 58.295 43.478 3.57 0.00 0.00 1.89
14 15 5.601313 AGTACTTGCCTTCTCCGGATAAATA 59.399 40.000 3.57 0.00 0.00 1.40
15 16 3.933861 ACTTGCCTTCTCCGGATAAAT 57.066 42.857 3.57 0.00 0.00 1.40
16 17 3.773119 AGTACTTGCCTTCTCCGGATAAA 59.227 43.478 3.57 1.35 0.00 1.40
17 18 3.371965 AGTACTTGCCTTCTCCGGATAA 58.628 45.455 3.57 2.59 0.00 1.75
18 19 3.028094 AGTACTTGCCTTCTCCGGATA 57.972 47.619 3.57 0.00 0.00 2.59
19 20 1.867363 AGTACTTGCCTTCTCCGGAT 58.133 50.000 3.57 0.00 0.00 4.18
20 21 1.549170 GAAGTACTTGCCTTCTCCGGA 59.451 52.381 14.14 2.93 36.29 5.14
21 22 1.275291 TGAAGTACTTGCCTTCTCCGG 59.725 52.381 14.14 0.00 39.24 5.14
22 23 2.737252 GTTGAAGTACTTGCCTTCTCCG 59.263 50.000 14.14 0.00 39.24 4.63
23 24 4.009370 AGTTGAAGTACTTGCCTTCTCC 57.991 45.455 14.14 0.00 39.24 3.71
24 25 5.349824 CAAGTTGAAGTACTTGCCTTCTC 57.650 43.478 14.14 0.00 45.85 2.87
32 33 4.931661 TCTCGGACAAGTTGAAGTACTT 57.068 40.909 8.13 8.13 38.87 2.24
33 34 4.931661 TTCTCGGACAAGTTGAAGTACT 57.068 40.909 10.54 0.00 0.00 2.73
34 35 5.978934 TTTTCTCGGACAAGTTGAAGTAC 57.021 39.130 10.54 0.00 0.00 2.73
35 36 6.990349 AGAATTTTCTCGGACAAGTTGAAGTA 59.010 34.615 10.54 0.00 29.94 2.24
36 37 5.823045 AGAATTTTCTCGGACAAGTTGAAGT 59.177 36.000 10.54 0.00 29.94 3.01
37 38 6.305693 AGAATTTTCTCGGACAAGTTGAAG 57.694 37.500 10.54 1.79 29.94 3.02
38 39 6.764085 TGTAGAATTTTCTCGGACAAGTTGAA 59.236 34.615 10.54 0.00 38.70 2.69
39 40 6.285224 TGTAGAATTTTCTCGGACAAGTTGA 58.715 36.000 10.54 0.00 38.70 3.18
40 41 6.539649 TGTAGAATTTTCTCGGACAAGTTG 57.460 37.500 0.00 0.00 38.70 3.16
41 42 6.934645 TCATGTAGAATTTTCTCGGACAAGTT 59.065 34.615 0.00 0.00 38.70 2.66
42 43 6.464222 TCATGTAGAATTTTCTCGGACAAGT 58.536 36.000 0.00 0.00 38.70 3.16
43 44 6.813649 TCTCATGTAGAATTTTCTCGGACAAG 59.186 38.462 0.00 0.00 38.70 3.16
44 45 6.697395 TCTCATGTAGAATTTTCTCGGACAA 58.303 36.000 0.00 0.00 38.70 3.18
45 46 6.280855 TCTCATGTAGAATTTTCTCGGACA 57.719 37.500 0.00 0.00 38.70 4.02
116 117 8.049117 TCTTCTCTTATTATCAACTGGCACATT 58.951 33.333 0.00 0.00 38.20 2.71
136 137 8.641541 AGGTATCTTCATCTTTCAGATCTTCTC 58.358 37.037 0.00 0.00 31.32 2.87
186 189 6.227298 AGAATGACTCCACGACAAAGATAT 57.773 37.500 0.00 0.00 0.00 1.63
248 251 7.258022 TGCTGACAAAATATACATTGCGTAT 57.742 32.000 0.43 0.00 43.45 3.06
361 364 8.836413 GCCAAATATATTAGCAACACTACAAGA 58.164 33.333 13.06 0.00 0.00 3.02
505 508 8.306313 TCTGTAGATAACCTGCATAAGAGAAA 57.694 34.615 0.00 0.00 36.89 2.52
557 560 4.982295 CGATTCTCCACGCATTGTAGATAA 59.018 41.667 0.00 0.00 0.00 1.75
559 562 3.068165 TCGATTCTCCACGCATTGTAGAT 59.932 43.478 0.00 0.00 0.00 1.98
593 596 4.119862 CCTCCAATCGTATACACACCTTG 58.880 47.826 3.32 0.00 0.00 3.61
604 607 1.737816 GCCGTAGCCTCCAATCGTA 59.262 57.895 0.00 0.00 0.00 3.43
657 660 2.632537 GAGGGGCCCAATCCTAAGATA 58.367 52.381 27.72 0.00 32.74 1.98
748 757 5.128663 ACACAGCCAAACAAATAAAGTCCTT 59.871 36.000 0.00 0.00 0.00 3.36
757 766 2.366266 AGATGCACACAGCCAAACAAAT 59.634 40.909 0.00 0.00 44.83 2.32
781 794 7.584122 ACATTACACTCGGACTCTACATAAT 57.416 36.000 0.00 0.00 0.00 1.28
812 825 9.791820 GATAAAGGGCGCTTTATTACTTAAAAA 57.208 29.630 35.43 16.56 38.98 1.94
856 869 4.569719 ATCGAAACTACCATTTGTCCCT 57.430 40.909 0.00 0.00 0.00 4.20
866 879 6.250344 AGGCAAAACTAAATCGAAACTACC 57.750 37.500 0.00 0.00 0.00 3.18
868 881 6.235664 AGGAGGCAAAACTAAATCGAAACTA 58.764 36.000 0.00 0.00 0.00 2.24
872 890 4.454504 GTGAGGAGGCAAAACTAAATCGAA 59.545 41.667 0.00 0.00 0.00 3.71
877 895 4.164843 ACAGTGAGGAGGCAAAACTAAA 57.835 40.909 0.00 0.00 0.00 1.85
880 898 2.736670 AACAGTGAGGAGGCAAAACT 57.263 45.000 0.00 0.00 0.00 2.66
1173 1193 4.388499 CCTGCGGTGGTAGCGGTT 62.388 66.667 0.00 0.00 39.82 4.44
1359 1379 4.825679 GGGGTGGAGGGGGAGGAG 62.826 77.778 0.00 0.00 0.00 3.69
1515 1535 1.259142 TGTAAATCGGCGTCTCCCCA 61.259 55.000 6.85 0.00 0.00 4.96
1591 1611 3.353114 CTTCGTCGGCGTCGTCGTA 62.353 63.158 26.20 17.40 45.17 3.43
1622 1642 1.206578 CCCGTGCACGAACACAATC 59.793 57.895 39.10 0.00 43.02 2.67
1820 1841 5.793026 AATTTCGAATCTCAACTGAGCTC 57.207 39.130 6.82 6.82 41.80 4.09
1836 1857 6.772078 ACCGCTTGATTAAGAAGTAATTTCG 58.228 36.000 0.58 0.00 40.86 3.46
1849 1870 3.907221 AGAGTACCCTACCGCTTGATTA 58.093 45.455 0.00 0.00 0.00 1.75
1963 2040 7.101054 TGCTAGTTGGTACTGTTCGAATTTAT 58.899 34.615 0.00 0.00 35.78 1.40
1989 2069 0.616891 AGATACCCCGAACCCAACAC 59.383 55.000 0.00 0.00 0.00 3.32
2031 2111 3.099141 AGCCCAAATCAATGTTACCCTG 58.901 45.455 0.00 0.00 0.00 4.45
2039 2119 2.034124 CCCCACTAGCCCAAATCAATG 58.966 52.381 0.00 0.00 0.00 2.82
2084 3407 2.297315 TCAGATCCTATAGCGCCACAAG 59.703 50.000 2.29 0.00 0.00 3.16
2141 3464 1.271102 GAGTCACCAGAGTGTCTCCAC 59.729 57.143 8.63 0.00 46.89 4.02
2188 3511 2.860735 CCGCACTACTCATTTCAGTAGC 59.139 50.000 7.42 0.00 46.95 3.58
2236 3559 9.685828 TTTCAAACGGAATATAGGTTCTTTTTG 57.314 29.630 0.00 0.00 34.91 2.44
2327 3653 7.591165 CAGATCCCATAATTGCATTACTTCAG 58.409 38.462 0.00 0.00 0.00 3.02
2338 3664 3.470709 ACTCACGCAGATCCCATAATTG 58.529 45.455 0.00 0.00 0.00 2.32
2385 3712 6.672218 CCTAAAAAGGAAAACCCCATCCTATT 59.328 38.462 0.00 0.00 45.33 1.73
2517 3850 9.685828 GGTTTGAATTGCAGTTTACAAGTTATA 57.314 29.630 0.00 0.00 0.00 0.98
2561 3894 2.926200 CAGAAGTCACAGCGAATACCAG 59.074 50.000 0.00 0.00 0.00 4.00
2753 4086 4.264217 GGGGTCCTCCTCCATTTCTAAAAA 60.264 45.833 0.00 0.00 35.33 1.94
2755 4088 2.850568 GGGGTCCTCCTCCATTTCTAAA 59.149 50.000 0.00 0.00 35.33 1.85
2756 4089 2.488836 GGGGTCCTCCTCCATTTCTAA 58.511 52.381 0.00 0.00 35.33 2.10
2757 4090 1.691482 CGGGGTCCTCCTCCATTTCTA 60.691 57.143 0.00 0.00 35.33 2.10
2758 4091 0.983378 CGGGGTCCTCCTCCATTTCT 60.983 60.000 0.00 0.00 35.33 2.52
2759 4092 1.527370 CGGGGTCCTCCTCCATTTC 59.473 63.158 0.00 0.00 35.33 2.17
2760 4093 2.001269 CCGGGGTCCTCCTCCATTT 61.001 63.158 0.00 0.00 35.33 2.32
2761 4094 2.366972 CCGGGGTCCTCCTCCATT 60.367 66.667 0.00 0.00 35.33 3.16
2762 4095 4.499116 CCCGGGGTCCTCCTCCAT 62.499 72.222 14.71 0.00 35.33 3.41
2773 4106 3.055470 TAAATGCAGAGCCCCGGGG 62.055 63.158 37.09 37.09 38.57 5.73
2774 4107 1.823899 GTAAATGCAGAGCCCCGGG 60.824 63.158 15.80 15.80 0.00 5.73
2775 4108 1.097547 CAGTAAATGCAGAGCCCCGG 61.098 60.000 0.00 0.00 0.00 5.73
2776 4109 0.107703 TCAGTAAATGCAGAGCCCCG 60.108 55.000 0.00 0.00 0.00 5.73
2777 4110 2.128771 TTCAGTAAATGCAGAGCCCC 57.871 50.000 0.00 0.00 0.00 5.80
2778 4111 4.488879 CTTTTTCAGTAAATGCAGAGCCC 58.511 43.478 0.00 0.00 0.00 5.19
2779 4112 4.488879 CCTTTTTCAGTAAATGCAGAGCC 58.511 43.478 0.00 0.00 0.00 4.70
2780 4113 3.922850 GCCTTTTTCAGTAAATGCAGAGC 59.077 43.478 0.00 0.00 0.00 4.09
2781 4114 5.382618 AGCCTTTTTCAGTAAATGCAGAG 57.617 39.130 0.00 0.00 0.00 3.35
2782 4115 5.789643 AAGCCTTTTTCAGTAAATGCAGA 57.210 34.783 0.00 0.00 0.00 4.26
2783 4116 5.117592 CGAAAGCCTTTTTCAGTAAATGCAG 59.882 40.000 0.00 0.00 0.00 4.41
2784 4117 4.981674 CGAAAGCCTTTTTCAGTAAATGCA 59.018 37.500 0.00 0.00 0.00 3.96
2785 4118 5.500740 CGAAAGCCTTTTTCAGTAAATGC 57.499 39.130 0.00 0.00 0.00 3.56
2846 4179 1.528161 GGTGTAGCGTGTGTTTGTACC 59.472 52.381 0.00 0.00 0.00 3.34
3262 4595 3.103213 AGCCCTGGTGGTGGTTGT 61.103 61.111 0.00 0.00 36.04 3.32
3575 4908 2.338984 GTCCACCGCTTGTCTCGT 59.661 61.111 0.00 0.00 0.00 4.18
3708 5041 4.241555 ATGGATCTGCCCGCGACC 62.242 66.667 8.23 0.00 34.97 4.79
4477 5810 4.179599 CTCCTCCCCTCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
4478 5811 3.036959 TCTCCTCCCCTCCCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
4479 5812 2.612251 CTCTCCTCCCCTCCCCTC 59.388 72.222 0.00 0.00 0.00 4.30
4480 5813 3.039526 CCTCTCCTCCCCTCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
4481 5814 4.179599 CCCTCTCCTCCCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
4482 5815 4.179599 CCCCTCTCCTCCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
4483 5816 4.179599 CCCCCTCTCCTCCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
4576 5909 2.798364 GCTCCGCTAGGGTTCCTCC 61.798 68.421 6.02 0.00 38.33 4.30
4577 5910 2.816012 GCTCCGCTAGGGTTCCTC 59.184 66.667 6.02 0.00 38.33 3.71
4578 5911 3.148279 CGCTCCGCTAGGGTTCCT 61.148 66.667 6.02 0.00 38.33 3.36
4579 5912 4.222847 CCGCTCCGCTAGGGTTCC 62.223 72.222 6.02 0.00 36.43 3.62
4580 5913 2.423290 GATCCGCTCCGCTAGGGTTC 62.423 65.000 6.02 0.00 36.43 3.62
4581 5914 2.444140 ATCCGCTCCGCTAGGGTT 60.444 61.111 6.02 0.00 36.43 4.11
4582 5915 2.913060 GATCCGCTCCGCTAGGGT 60.913 66.667 6.02 0.00 36.43 4.34
4583 5916 4.044484 CGATCCGCTCCGCTAGGG 62.044 72.222 0.00 0.00 38.33 3.53
4606 5939 4.097361 GAAGGCACGGAGGACCCC 62.097 72.222 0.00 0.00 0.00 4.95
4607 5940 3.003763 AGAAGGCACGGAGGACCC 61.004 66.667 0.00 0.00 0.00 4.46
4608 5941 2.579738 GAGAAGGCACGGAGGACC 59.420 66.667 0.00 0.00 0.00 4.46
4609 5942 2.182030 CGAGAAGGCACGGAGGAC 59.818 66.667 0.00 0.00 0.00 3.85
4610 5943 2.035155 TCGAGAAGGCACGGAGGA 59.965 61.111 0.00 0.00 0.00 3.71
4611 5944 2.492090 CTCGAGAAGGCACGGAGG 59.508 66.667 6.58 0.00 0.00 4.30
4612 5945 2.492090 CCTCGAGAAGGCACGGAG 59.508 66.667 15.71 0.00 38.67 4.63
4616 5949 7.224375 GGAGTATCTTACCTCGAGAAGGCAC 62.224 52.000 15.71 11.27 42.04 5.01
4617 5950 5.228145 GGAGTATCTTACCTCGAGAAGGCA 61.228 50.000 15.71 0.00 42.04 4.75
4618 5951 3.253921 GGAGTATCTTACCTCGAGAAGGC 59.746 52.174 15.71 5.21 42.04 4.35
4619 5952 3.499157 CGGAGTATCTTACCTCGAGAAGG 59.501 52.174 15.71 0.00 43.32 3.46
4620 5953 3.058777 GCGGAGTATCTTACCTCGAGAAG 60.059 52.174 15.71 10.81 33.73 2.85
4621 5954 2.877168 GCGGAGTATCTTACCTCGAGAA 59.123 50.000 15.71 0.00 33.73 2.87
4622 5955 2.492012 GCGGAGTATCTTACCTCGAGA 58.508 52.381 15.71 0.00 33.73 4.04
4623 5956 1.194997 CGCGGAGTATCTTACCTCGAG 59.805 57.143 5.13 5.13 33.73 4.04
4624 5957 1.224075 CGCGGAGTATCTTACCTCGA 58.776 55.000 0.00 0.00 33.73 4.04
4625 5958 0.385723 GCGCGGAGTATCTTACCTCG 60.386 60.000 8.83 0.00 33.73 4.63
4626 5959 0.039346 GGCGCGGAGTATCTTACCTC 60.039 60.000 8.83 0.00 33.73 3.85
4627 5960 1.461911 GGGCGCGGAGTATCTTACCT 61.462 60.000 8.83 0.00 33.73 3.08
4628 5961 1.006454 GGGCGCGGAGTATCTTACC 60.006 63.158 8.83 0.00 33.73 2.85
4629 5962 0.596859 GTGGGCGCGGAGTATCTTAC 60.597 60.000 8.83 0.00 33.73 2.34
4630 5963 1.737816 GTGGGCGCGGAGTATCTTA 59.262 57.895 8.83 0.00 33.73 2.10
4631 5964 2.499685 GTGGGCGCGGAGTATCTT 59.500 61.111 8.83 0.00 33.73 2.40
4632 5965 3.900892 CGTGGGCGCGGAGTATCT 61.901 66.667 8.83 0.00 33.73 1.98
4633 5966 1.859427 TATCGTGGGCGCGGAGTATC 61.859 60.000 8.83 0.00 38.14 2.24
4634 5967 1.248785 ATATCGTGGGCGCGGAGTAT 61.249 55.000 8.83 0.00 38.14 2.12
4635 5968 1.859427 GATATCGTGGGCGCGGAGTA 61.859 60.000 8.83 0.00 38.14 2.59
4636 5969 3.208884 GATATCGTGGGCGCGGAGT 62.209 63.158 8.83 0.00 38.14 3.85
4637 5970 2.430921 GATATCGTGGGCGCGGAG 60.431 66.667 8.83 0.00 38.14 4.63
4638 5971 4.337060 CGATATCGTGGGCGCGGA 62.337 66.667 17.06 0.00 38.14 5.54
4645 5978 1.373497 GCAGAGCCCGATATCGTGG 60.373 63.158 22.81 22.06 37.74 4.94
4646 5979 0.037882 ATGCAGAGCCCGATATCGTG 60.038 55.000 22.81 13.72 37.74 4.35
4647 5980 0.681733 AATGCAGAGCCCGATATCGT 59.318 50.000 22.81 5.37 37.74 3.73
4648 5981 1.462283 CAAATGCAGAGCCCGATATCG 59.538 52.381 18.31 18.31 39.44 2.92
4649 5982 1.808945 CCAAATGCAGAGCCCGATATC 59.191 52.381 0.00 0.00 0.00 1.63
4650 5983 1.421268 TCCAAATGCAGAGCCCGATAT 59.579 47.619 0.00 0.00 0.00 1.63
4651 5984 0.836606 TCCAAATGCAGAGCCCGATA 59.163 50.000 0.00 0.00 0.00 2.92
4652 5985 0.749454 GTCCAAATGCAGAGCCCGAT 60.749 55.000 0.00 0.00 0.00 4.18
4666 5999 2.409055 GGCTGCATGCATCGTCCAA 61.409 57.895 22.97 0.00 45.15 3.53
4697 6030 7.962964 TGACTTTGTAAGGTCTTATGTGAAG 57.037 36.000 8.11 0.00 34.01 3.02
4733 6066 1.115467 CCTAGACGGTGGCTTCAGAT 58.885 55.000 0.00 0.00 0.00 2.90
4766 6099 6.327365 TCTTCATCATTTGGATAGGAGTAGCA 59.673 38.462 0.00 0.00 33.95 3.49
4813 6147 1.429463 CTGCGAGGTCTGTTTGGTAC 58.571 55.000 0.00 0.00 0.00 3.34
5116 6451 4.395854 GGTGCTTCATCACACACATTGATA 59.604 41.667 0.00 0.00 38.57 2.15
5145 6482 1.376553 GCTGGAGGTGACAAGAGGC 60.377 63.158 0.00 0.00 0.00 4.70
5190 6527 6.456584 CGTTCTTAGTAGCGTGTTCTCTCATA 60.457 42.308 0.00 0.00 0.00 2.15
5196 6535 2.593257 GCGTTCTTAGTAGCGTGTTCT 58.407 47.619 0.00 0.00 0.00 3.01
5200 6539 1.852895 GATGGCGTTCTTAGTAGCGTG 59.147 52.381 0.00 0.00 0.00 5.34
5878 7313 4.383861 TGCAGAGCAGGCGACCAG 62.384 66.667 0.00 0.00 33.32 4.00
5887 7322 3.963374 ACATTAGTAGGATCTGCAGAGCA 59.037 43.478 31.24 11.14 36.92 4.26
5888 7323 4.599047 ACATTAGTAGGATCTGCAGAGC 57.401 45.455 23.68 23.68 0.00 4.09
5890 7325 5.211973 AGGAACATTAGTAGGATCTGCAGA 58.788 41.667 20.79 20.79 0.00 4.26
5892 7327 5.957771 AAGGAACATTAGTAGGATCTGCA 57.042 39.130 0.00 0.00 0.00 4.41
5897 7332 9.853177 CCAATAAGAAAGGAACATTAGTAGGAT 57.147 33.333 0.00 0.00 0.00 3.24
5898 7333 8.272173 CCCAATAAGAAAGGAACATTAGTAGGA 58.728 37.037 0.00 0.00 0.00 2.94
5899 7334 7.502561 CCCCAATAAGAAAGGAACATTAGTAGG 59.497 40.741 0.00 0.00 0.00 3.18
5901 7336 7.184936 TCCCCCAATAAGAAAGGAACATTAGTA 59.815 37.037 0.00 0.00 0.00 1.82
5902 7337 6.011096 TCCCCCAATAAGAAAGGAACATTAGT 60.011 38.462 0.00 0.00 0.00 2.24
5903 7338 6.431722 TCCCCCAATAAGAAAGGAACATTAG 58.568 40.000 0.00 0.00 0.00 1.73
5904 7339 6.218730 TCTCCCCCAATAAGAAAGGAACATTA 59.781 38.462 0.00 0.00 0.00 1.90
5905 7340 5.016245 TCTCCCCCAATAAGAAAGGAACATT 59.984 40.000 0.00 0.00 0.00 2.71
5906 7341 4.544152 TCTCCCCCAATAAGAAAGGAACAT 59.456 41.667 0.00 0.00 0.00 2.71
5907 7342 3.920197 TCTCCCCCAATAAGAAAGGAACA 59.080 43.478 0.00 0.00 0.00 3.18
5908 7343 4.586306 TCTCCCCCAATAAGAAAGGAAC 57.414 45.455 0.00 0.00 0.00 3.62
5909 7344 5.813965 ATTCTCCCCCAATAAGAAAGGAA 57.186 39.130 0.00 0.00 33.10 3.36
5910 7345 5.813965 AATTCTCCCCCAATAAGAAAGGA 57.186 39.130 0.00 0.00 33.10 3.36
5912 7347 6.665248 AGTGAAATTCTCCCCCAATAAGAAAG 59.335 38.462 0.00 0.00 33.10 2.62
5913 7348 6.561294 AGTGAAATTCTCCCCCAATAAGAAA 58.439 36.000 0.00 0.00 33.10 2.52
5914 7349 6.152638 AGTGAAATTCTCCCCCAATAAGAA 57.847 37.500 0.00 0.00 33.83 2.52
5915 7350 5.796502 AGTGAAATTCTCCCCCAATAAGA 57.203 39.130 0.00 0.00 0.00 2.10
5916 7351 5.127682 CCAAGTGAAATTCTCCCCCAATAAG 59.872 44.000 0.00 0.00 0.00 1.73
5917 7352 5.022787 CCAAGTGAAATTCTCCCCCAATAA 58.977 41.667 0.00 0.00 0.00 1.40
5918 7353 4.609301 CCAAGTGAAATTCTCCCCCAATA 58.391 43.478 0.00 0.00 0.00 1.90
5933 7370 1.993701 TTGGTGCAGAGGCCAAGTGA 61.994 55.000 5.01 0.00 39.57 3.41
5956 7397 1.039856 AAAATGGCCGTATGCATCCC 58.960 50.000 0.19 0.18 43.89 3.85
5987 7428 7.636150 AATTCTGAGGACCATGTTTATCTTG 57.364 36.000 0.00 0.00 0.00 3.02
6047 7488 1.470051 AGTTTGGTGTGTGGTGGAAC 58.530 50.000 0.00 0.00 0.00 3.62
6048 7489 1.821753 CAAGTTTGGTGTGTGGTGGAA 59.178 47.619 0.00 0.00 0.00 3.53
6049 7490 1.004862 TCAAGTTTGGTGTGTGGTGGA 59.995 47.619 0.00 0.00 0.00 4.02
6050 7491 1.468985 TCAAGTTTGGTGTGTGGTGG 58.531 50.000 0.00 0.00 0.00 4.61
6051 7492 2.034558 GGATCAAGTTTGGTGTGTGGTG 59.965 50.000 0.00 0.00 0.00 4.17
6052 7493 2.091885 AGGATCAAGTTTGGTGTGTGGT 60.092 45.455 0.00 0.00 0.00 4.16
6053 7494 2.554032 GAGGATCAAGTTTGGTGTGTGG 59.446 50.000 0.00 0.00 33.17 4.17
6054 7495 3.213506 TGAGGATCAAGTTTGGTGTGTG 58.786 45.455 0.00 0.00 45.97 3.82
6055 7496 3.576078 TGAGGATCAAGTTTGGTGTGT 57.424 42.857 0.00 0.00 45.97 3.72
6068 7509 5.899547 AGTTTTCCCCCATTTATTGAGGATC 59.100 40.000 0.00 0.00 30.46 3.36
6069 7510 5.853700 AGTTTTCCCCCATTTATTGAGGAT 58.146 37.500 0.00 0.00 30.46 3.24
6070 7511 5.269189 GAGTTTTCCCCCATTTATTGAGGA 58.731 41.667 0.00 0.00 0.00 3.71
6071 7512 4.405680 GGAGTTTTCCCCCATTTATTGAGG 59.594 45.833 0.00 0.00 37.53 3.86
6072 7513 5.598416 GGAGTTTTCCCCCATTTATTGAG 57.402 43.478 0.00 0.00 37.53 3.02
6085 7526 0.521735 GTGATGCACGGGAGTTTTCC 59.478 55.000 0.00 0.00 44.67 3.13
6086 7527 0.521735 GGTGATGCACGGGAGTTTTC 59.478 55.000 0.00 0.00 44.67 2.29
6087 7528 0.110486 AGGTGATGCACGGGAGTTTT 59.890 50.000 0.00 0.00 44.67 2.43
6088 7529 0.606401 CAGGTGATGCACGGGAGTTT 60.606 55.000 0.00 0.00 44.67 2.66
6089 7530 1.003355 CAGGTGATGCACGGGAGTT 60.003 57.895 0.00 0.00 44.67 3.01
6091 7532 1.448540 GACAGGTGATGCACGGGAG 60.449 63.158 0.00 0.00 34.83 4.30
6092 7533 1.763546 TTGACAGGTGATGCACGGGA 61.764 55.000 0.00 0.00 34.83 5.14
6093 7534 0.677731 ATTGACAGGTGATGCACGGG 60.678 55.000 0.00 0.00 34.83 5.28
6094 7535 1.131126 GAATTGACAGGTGATGCACGG 59.869 52.381 0.00 0.00 34.83 4.94
6095 7536 2.079158 AGAATTGACAGGTGATGCACG 58.921 47.619 0.00 0.00 34.83 5.34
6096 7537 3.624861 CCTAGAATTGACAGGTGATGCAC 59.375 47.826 0.00 0.00 0.00 4.57
6097 7538 3.519107 TCCTAGAATTGACAGGTGATGCA 59.481 43.478 0.00 0.00 0.00 3.96
6098 7539 4.142609 TCCTAGAATTGACAGGTGATGC 57.857 45.455 0.00 0.00 0.00 3.91
6099 7540 6.825213 TCAATTCCTAGAATTGACAGGTGATG 59.175 38.462 22.54 1.65 40.53 3.07
6100 7541 6.962182 TCAATTCCTAGAATTGACAGGTGAT 58.038 36.000 22.54 0.00 40.53 3.06
6101 7542 6.373005 TCAATTCCTAGAATTGACAGGTGA 57.627 37.500 22.54 5.42 40.53 4.02
6102 7543 6.656693 AGTTCAATTCCTAGAATTGACAGGTG 59.343 38.462 24.95 4.88 43.81 4.00
6103 7544 6.784031 AGTTCAATTCCTAGAATTGACAGGT 58.216 36.000 24.95 11.97 43.81 4.00
6104 7545 6.036517 CGAGTTCAATTCCTAGAATTGACAGG 59.963 42.308 24.95 14.49 43.81 4.00
6105 7546 6.036517 CCGAGTTCAATTCCTAGAATTGACAG 59.963 42.308 24.95 17.52 43.81 3.51
6106 7547 5.874810 CCGAGTTCAATTCCTAGAATTGACA 59.125 40.000 24.95 16.29 43.81 3.58
6107 7548 5.294552 CCCGAGTTCAATTCCTAGAATTGAC 59.705 44.000 24.95 20.09 43.81 3.18
6108 7549 5.045869 ACCCGAGTTCAATTCCTAGAATTGA 60.046 40.000 22.54 22.54 42.82 2.57
6109 7550 5.186198 ACCCGAGTTCAATTCCTAGAATTG 58.814 41.667 19.37 19.37 38.60 2.32
6110 7551 5.429130 GACCCGAGTTCAATTCCTAGAATT 58.571 41.667 0.00 0.00 0.00 2.17
6111 7552 4.441634 CGACCCGAGTTCAATTCCTAGAAT 60.442 45.833 0.00 0.00 0.00 2.40
6112 7553 3.119245 CGACCCGAGTTCAATTCCTAGAA 60.119 47.826 0.00 0.00 0.00 2.10
6113 7554 2.426024 CGACCCGAGTTCAATTCCTAGA 59.574 50.000 0.00 0.00 0.00 2.43
6114 7555 2.165845 ACGACCCGAGTTCAATTCCTAG 59.834 50.000 0.00 0.00 0.00 3.02
6115 7556 2.173519 ACGACCCGAGTTCAATTCCTA 58.826 47.619 0.00 0.00 0.00 2.94
6116 7557 0.974383 ACGACCCGAGTTCAATTCCT 59.026 50.000 0.00 0.00 0.00 3.36
6117 7558 1.804601 AACGACCCGAGTTCAATTCC 58.195 50.000 0.00 0.00 0.00 3.01
6118 7559 2.928116 CCTAACGACCCGAGTTCAATTC 59.072 50.000 0.00 0.00 33.42 2.17
6119 7560 2.933928 GCCTAACGACCCGAGTTCAATT 60.934 50.000 0.00 0.00 33.42 2.32
6120 7561 1.405121 GCCTAACGACCCGAGTTCAAT 60.405 52.381 0.00 0.00 33.42 2.57
6121 7562 0.037975 GCCTAACGACCCGAGTTCAA 60.038 55.000 0.00 0.00 33.42 2.69
6122 7563 0.896940 AGCCTAACGACCCGAGTTCA 60.897 55.000 0.00 0.00 33.42 3.18
6123 7564 0.458025 CAGCCTAACGACCCGAGTTC 60.458 60.000 0.00 0.00 33.42 3.01
6124 7565 1.590147 CAGCCTAACGACCCGAGTT 59.410 57.895 0.00 0.00 35.75 3.01
6125 7566 3.003113 GCAGCCTAACGACCCGAGT 62.003 63.158 0.00 0.00 0.00 4.18
6126 7567 2.202756 GCAGCCTAACGACCCGAG 60.203 66.667 0.00 0.00 0.00 4.63
6127 7568 2.992689 TGCAGCCTAACGACCCGA 60.993 61.111 0.00 0.00 0.00 5.14
6128 7569 2.813908 GTGCAGCCTAACGACCCG 60.814 66.667 0.00 0.00 0.00 5.28
6129 7570 1.302192 TTGTGCAGCCTAACGACCC 60.302 57.895 0.00 0.00 0.00 4.46
6130 7571 1.574702 GGTTGTGCAGCCTAACGACC 61.575 60.000 5.25 5.25 42.26 4.79
6131 7572 1.866925 GGTTGTGCAGCCTAACGAC 59.133 57.895 0.00 0.00 0.00 4.34
6132 7573 1.666553 CGGTTGTGCAGCCTAACGA 60.667 57.895 3.70 0.00 0.00 3.85
6133 7574 2.860293 CGGTTGTGCAGCCTAACG 59.140 61.111 3.70 0.00 0.00 3.18
6134 7575 2.258013 TGCGGTTGTGCAGCCTAAC 61.258 57.895 3.70 0.00 40.62 2.34
6135 7576 2.112087 TGCGGTTGTGCAGCCTAA 59.888 55.556 3.70 0.00 40.62 2.69
6142 7583 3.988525 TTGGGCATGCGGTTGTGC 61.989 61.111 12.44 0.00 40.55 4.57
6143 7584 2.049248 GTTGGGCATGCGGTTGTG 60.049 61.111 12.44 0.00 0.00 3.33
6144 7585 3.302344 GGTTGGGCATGCGGTTGT 61.302 61.111 12.44 0.00 0.00 3.32
6145 7586 3.301554 TGGTTGGGCATGCGGTTG 61.302 61.111 12.44 0.00 0.00 3.77
6146 7587 3.302344 GTGGTTGGGCATGCGGTT 61.302 61.111 12.44 0.00 0.00 4.44
6147 7588 4.284550 AGTGGTTGGGCATGCGGT 62.285 61.111 12.44 0.00 0.00 5.68
6148 7589 3.751246 CAGTGGTTGGGCATGCGG 61.751 66.667 12.44 0.00 0.00 5.69
6149 7590 2.672651 TCAGTGGTTGGGCATGCG 60.673 61.111 12.44 0.00 0.00 4.73
6150 7591 3.281240 CTCAGTGGTTGGGCATGC 58.719 61.111 9.90 9.90 0.00 4.06
6155 7596 1.604593 CCTTGGCTCAGTGGTTGGG 60.605 63.158 0.00 0.00 0.00 4.12
6156 7597 2.270986 GCCTTGGCTCAGTGGTTGG 61.271 63.158 4.11 0.00 0.00 3.77
6157 7598 1.228367 AGCCTTGGCTCAGTGGTTG 60.228 57.895 8.56 0.00 0.00 3.77
6158 7599 1.073897 GAGCCTTGGCTCAGTGGTT 59.926 57.895 30.25 1.25 36.86 3.67
6159 7600 1.835927 GAGAGCCTTGGCTCAGTGGT 61.836 60.000 34.40 19.17 39.13 4.16
6160 7601 1.078567 GAGAGCCTTGGCTCAGTGG 60.079 63.158 34.40 0.00 39.13 4.00
6161 7602 0.324285 AAGAGAGCCTTGGCTCAGTG 59.676 55.000 34.40 0.00 39.13 3.66
6162 7603 1.063183 AAAGAGAGCCTTGGCTCAGT 58.937 50.000 34.40 22.13 39.13 3.41
6163 7604 1.002888 TCAAAGAGAGCCTTGGCTCAG 59.997 52.381 34.40 21.27 39.13 3.35
6164 7605 1.059098 TCAAAGAGAGCCTTGGCTCA 58.941 50.000 34.40 16.37 39.13 4.26
6165 7606 2.416680 ATCAAAGAGAGCCTTGGCTC 57.583 50.000 28.67 28.67 34.79 4.70
6166 7607 4.307032 TTTATCAAAGAGAGCCTTGGCT 57.693 40.909 14.69 14.69 34.79 4.75
6167 7608 4.886489 AGATTTATCAAAGAGAGCCTTGGC 59.114 41.667 2.97 2.97 34.79 4.52
6168 7609 6.827762 AGAAGATTTATCAAAGAGAGCCTTGG 59.172 38.462 0.00 0.00 34.79 3.61
6169 7610 7.862512 AGAAGATTTATCAAAGAGAGCCTTG 57.137 36.000 0.00 0.00 34.79 3.61
6170 7611 7.338957 CCAAGAAGATTTATCAAAGAGAGCCTT 59.661 37.037 0.00 0.00 36.47 4.35
6171 7612 6.827762 CCAAGAAGATTTATCAAAGAGAGCCT 59.172 38.462 0.00 0.00 0.00 4.58
6172 7613 6.601217 ACCAAGAAGATTTATCAAAGAGAGCC 59.399 38.462 0.00 0.00 0.00 4.70
6173 7614 7.622893 ACCAAGAAGATTTATCAAAGAGAGC 57.377 36.000 0.00 0.00 0.00 4.09
6174 7615 9.007901 ACAACCAAGAAGATTTATCAAAGAGAG 57.992 33.333 0.00 0.00 0.00 3.20
6175 7616 8.924511 ACAACCAAGAAGATTTATCAAAGAGA 57.075 30.769 0.00 0.00 0.00 3.10
6265 7707 6.764877 AACTACGTATGCTTACATGTATGC 57.235 37.500 28.07 28.07 37.04 3.14
6310 7867 3.608316 AGATGAACAGAGTTCTGAGGC 57.392 47.619 15.63 5.24 46.59 4.70
6537 8099 4.685628 GCAATGAATGTAACCCTTGTTGTG 59.314 41.667 0.00 0.00 35.87 3.33
6551 8113 8.415192 ACAATAAATTAGTGCTGCAATGAATG 57.585 30.769 13.47 4.88 0.00 2.67
6758 8802 2.995939 TCTCAGTAACAGCTTCAATGCG 59.004 45.455 0.00 0.00 38.13 4.73
6804 8848 5.010922 CAGGAAACAACCCATTTGAATCTGA 59.989 40.000 0.00 0.00 38.73 3.27
6818 8862 4.290155 CAGCAACATGTACAGGAAACAAC 58.710 43.478 15.54 0.00 0.00 3.32
6857 8901 4.953667 TGCAGAGTTCATAGATTAGCTGG 58.046 43.478 0.00 0.00 0.00 4.85
6860 8904 6.314896 AGTGTTTGCAGAGTTCATAGATTAGC 59.685 38.462 0.00 0.00 0.00 3.09
6995 9039 4.706476 TCCATGACATTCACCATTCTTTCC 59.294 41.667 0.00 0.00 0.00 3.13
7099 9143 7.609918 TGTTGTTCACTATATTTGGCAGTACAT 59.390 33.333 0.00 0.00 0.00 2.29
7199 9243 6.261826 CCAAGAAGAATAGATTTGGTAGGCTG 59.738 42.308 0.00 0.00 34.88 4.85
7232 9276 3.309410 CAGCCAAACAAGAAAACGCATTT 59.691 39.130 0.00 0.00 0.00 2.32
7237 9281 4.545823 TCTACAGCCAAACAAGAAAACG 57.454 40.909 0.00 0.00 0.00 3.60
7240 9284 6.463995 AATGTTCTACAGCCAAACAAGAAA 57.536 33.333 0.00 0.00 36.57 2.52
7518 9562 1.441729 ACCGTCAGATATGGTGCCG 59.558 57.895 0.00 0.00 46.34 5.69
7798 9842 3.605634 TGGTAGACATGCATACCACAAC 58.394 45.455 20.39 2.05 45.05 3.32
7890 9934 1.492993 AAGCTCCTCTCCACCCCAAC 61.493 60.000 0.00 0.00 0.00 3.77
7971 10015 4.643675 CGCAGGATTAAACACGCG 57.356 55.556 3.53 3.53 36.47 6.01
8048 10092 1.290955 CAAGGCACACCCATTGCAG 59.709 57.895 0.00 0.00 42.12 4.41
8199 10247 3.807071 CCTTGCACGGTAAATTGCTTTTT 59.193 39.130 0.00 0.00 39.62 1.94
8331 10410 1.912043 AGTTGGAGGAATCCAGGTCAG 59.088 52.381 0.61 0.00 41.35 3.51
8337 10416 3.261897 GTGAGAGAAGTTGGAGGAATCCA 59.738 47.826 0.61 0.00 38.14 3.41
8364 10443 4.188462 TGGACGAGTGTATTATTGCTTGG 58.812 43.478 0.00 0.00 0.00 3.61
8410 10489 7.934665 ACTAGCGAGAGATAAAGTAGATTCAGA 59.065 37.037 0.00 0.00 0.00 3.27
8411 10490 8.094798 ACTAGCGAGAGATAAAGTAGATTCAG 57.905 38.462 0.00 0.00 0.00 3.02
8426 10505 8.076714 TGCATTATAAATTGAACTAGCGAGAG 57.923 34.615 0.00 0.00 0.00 3.20
8479 10559 9.671279 ATCACTATGTTTCATACAGTTTCATCA 57.329 29.630 0.00 0.00 40.83 3.07
8492 10572 9.447157 TCAACAACATATCATCACTATGTTTCA 57.553 29.630 6.07 0.00 43.73 2.69
8603 10683 7.860872 AGAAAACCTTGTAAAACTTGATAAGCG 59.139 33.333 0.00 0.00 0.00 4.68
8606 10686 8.895737 ACGAGAAAACCTTGTAAAACTTGATAA 58.104 29.630 0.00 0.00 37.74 1.75
8620 10700 6.346896 ACACTCTAGAAAACGAGAAAACCTT 58.653 36.000 0.00 0.00 0.00 3.50
8636 10716 6.470556 CGATGAAACACAGTGATACACTCTAG 59.529 42.308 7.81 0.00 43.43 2.43
8638 10718 5.048013 TCGATGAAACACAGTGATACACTCT 60.048 40.000 7.81 0.00 43.43 3.24
8639 10719 5.161358 TCGATGAAACACAGTGATACACTC 58.839 41.667 7.81 0.00 43.43 3.51
8660 10740 2.670414 GACTTCTGAAGCATGGAACTCG 59.330 50.000 17.00 0.00 0.00 4.18
8726 10806 6.223120 GTCAATGTAACAAGGGCTTTGAAAT 58.777 36.000 16.87 4.54 39.21 2.17
8903 10984 5.453339 CCCTTGATCCTTCGAGCATAAACTA 60.453 44.000 0.00 0.00 33.60 2.24
8909 10990 1.207791 ACCCTTGATCCTTCGAGCAT 58.792 50.000 0.00 0.00 33.60 3.79
8937 11018 3.930336 TCTCAATGACGATCTTTGCACT 58.070 40.909 0.00 0.00 33.22 4.40
8942 11023 5.412904 GTCCCTTTTCTCAATGACGATCTTT 59.587 40.000 0.00 0.00 0.00 2.52
8962 11044 5.233689 CGAGGACGAAAAATATACTTGTCCC 59.766 44.000 11.74 5.89 44.21 4.46
8963 11045 6.038356 TCGAGGACGAAAAATATACTTGTCC 58.962 40.000 8.88 8.88 45.74 4.02
8989 11071 5.169295 ACGATTTCTAAACTCCCGAAAGAG 58.831 41.667 0.00 0.00 39.91 2.85
8990 11072 5.143376 ACGATTTCTAAACTCCCGAAAGA 57.857 39.130 0.00 0.00 31.07 2.52
8991 11073 4.329256 GGACGATTTCTAAACTCCCGAAAG 59.671 45.833 0.00 0.00 31.07 2.62
8992 11074 4.248058 GGACGATTTCTAAACTCCCGAAA 58.752 43.478 0.00 0.00 0.00 3.46
8993 11075 3.368739 GGGACGATTTCTAAACTCCCGAA 60.369 47.826 0.00 0.00 0.00 4.30
8994 11076 2.167075 GGGACGATTTCTAAACTCCCGA 59.833 50.000 0.00 0.00 0.00 5.14
8995 11077 2.167900 AGGGACGATTTCTAAACTCCCG 59.832 50.000 0.00 0.00 42.09 5.14
8996 11078 3.197116 TGAGGGACGATTTCTAAACTCCC 59.803 47.826 0.00 0.00 38.13 4.30
8997 11079 4.467198 TGAGGGACGATTTCTAAACTCC 57.533 45.455 0.00 0.00 0.00 3.85
8998 11080 5.480205 AGTTGAGGGACGATTTCTAAACTC 58.520 41.667 0.00 0.00 0.00 3.01
8999 11081 5.485209 AGTTGAGGGACGATTTCTAAACT 57.515 39.130 0.00 0.00 0.00 2.66
9000 11082 5.699458 TGAAGTTGAGGGACGATTTCTAAAC 59.301 40.000 0.00 0.00 32.19 2.01
9001 11083 5.860611 TGAAGTTGAGGGACGATTTCTAAA 58.139 37.500 0.00 0.00 32.19 1.85
9002 11084 5.477607 TGAAGTTGAGGGACGATTTCTAA 57.522 39.130 0.00 0.00 32.19 2.10
9003 11085 5.477607 TTGAAGTTGAGGGACGATTTCTA 57.522 39.130 0.00 0.00 32.19 2.10
9004 11086 4.351874 TTGAAGTTGAGGGACGATTTCT 57.648 40.909 0.00 0.00 32.19 2.52
9005 11087 4.320275 GGTTTGAAGTTGAGGGACGATTTC 60.320 45.833 0.00 0.00 31.77 2.17
9006 11088 3.568430 GGTTTGAAGTTGAGGGACGATTT 59.432 43.478 0.00 0.00 0.00 2.17
9007 11089 3.146847 GGTTTGAAGTTGAGGGACGATT 58.853 45.455 0.00 0.00 0.00 3.34
9008 11090 2.779506 GGTTTGAAGTTGAGGGACGAT 58.220 47.619 0.00 0.00 0.00 3.73
9009 11091 1.539496 CGGTTTGAAGTTGAGGGACGA 60.539 52.381 0.00 0.00 0.00 4.20
9010 11092 0.865769 CGGTTTGAAGTTGAGGGACG 59.134 55.000 0.00 0.00 0.00 4.79
9011 11093 1.202722 TCCGGTTTGAAGTTGAGGGAC 60.203 52.381 0.00 0.00 0.00 4.46
9012 11094 1.133363 TCCGGTTTGAAGTTGAGGGA 58.867 50.000 0.00 0.00 0.00 4.20
9013 11095 2.200373 ATCCGGTTTGAAGTTGAGGG 57.800 50.000 0.00 0.00 0.00 4.30
9014 11096 3.939066 ACTATCCGGTTTGAAGTTGAGG 58.061 45.455 0.00 0.00 0.00 3.86
9015 11097 5.941948 AAACTATCCGGTTTGAAGTTGAG 57.058 39.130 0.00 0.00 37.91 3.02
9016 11098 5.049954 CGAAAACTATCCGGTTTGAAGTTGA 60.050 40.000 0.00 0.00 39.08 3.18
9017 11099 5.144359 CGAAAACTATCCGGTTTGAAGTTG 58.856 41.667 0.00 0.00 39.08 3.16
9018 11100 4.818005 ACGAAAACTATCCGGTTTGAAGTT 59.182 37.500 0.00 2.68 39.08 2.66
9019 11101 4.383173 ACGAAAACTATCCGGTTTGAAGT 58.617 39.130 0.00 0.00 39.08 3.01
9020 11102 4.142966 GGACGAAAACTATCCGGTTTGAAG 60.143 45.833 0.00 0.00 39.08 3.02
9021 11103 3.747529 GGACGAAAACTATCCGGTTTGAA 59.252 43.478 0.00 0.00 39.08 2.69
9022 11104 3.328505 GGACGAAAACTATCCGGTTTGA 58.671 45.455 0.00 0.00 39.08 2.69
9023 11105 2.417586 GGGACGAAAACTATCCGGTTTG 59.582 50.000 0.00 0.00 39.08 2.93
9024 11106 2.303890 AGGGACGAAAACTATCCGGTTT 59.696 45.455 0.00 0.00 40.59 3.27
9025 11107 1.904537 AGGGACGAAAACTATCCGGTT 59.095 47.619 0.00 0.00 32.90 4.44
9026 11108 1.479730 GAGGGACGAAAACTATCCGGT 59.520 52.381 0.00 0.00 32.90 5.28
9027 11109 2.220479 GAGGGACGAAAACTATCCGG 57.780 55.000 0.00 0.00 32.90 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.