Multiple sequence alignment - TraesCS2D01G223600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G223600 chr2D 100.000 3308 0 0 1 3308 190368661 190371968 0.000000e+00 6109.0
1 TraesCS2D01G223600 chr2D 95.536 448 20 0 2861 3308 117212524 117212077 0.000000e+00 717.0
2 TraesCS2D01G223600 chr2D 79.825 228 26 12 1 208 625154697 625154470 7.400000e-32 148.0
3 TraesCS2D01G223600 chr2D 93.617 94 2 2 287 380 624563498 624563587 1.600000e-28 137.0
4 TraesCS2D01G223600 chr2D 80.000 120 16 6 1257 1372 190437363 190437478 7.610000e-12 82.4
5 TraesCS2D01G223600 chr2A 95.610 2073 74 11 386 2442 204929249 204931320 0.000000e+00 3308.0
6 TraesCS2D01G223600 chr2A 95.759 448 19 0 2861 3308 104321435 104320988 0.000000e+00 723.0
7 TraesCS2D01G223600 chr2A 92.593 297 22 0 2480 2776 62529565 62529861 8.480000e-116 427.0
8 TraesCS2D01G223600 chr2A 80.165 121 15 7 1257 1372 204993376 204993492 7.610000e-12 82.4
9 TraesCS2D01G223600 chr2B 95.152 1609 68 5 873 2479 247517581 247519181 0.000000e+00 2531.0
10 TraesCS2D01G223600 chr2B 96.491 456 15 1 399 854 247516843 247517297 0.000000e+00 752.0
11 TraesCS2D01G223600 chr2B 87.132 272 15 8 1 252 158359847 158359576 1.160000e-74 291.0
12 TraesCS2D01G223600 chr5D 96.854 445 14 0 2861 3305 544397106 544397550 0.000000e+00 745.0
13 TraesCS2D01G223600 chr5D 93.182 88 2 1 297 380 36492546 36492459 3.470000e-25 126.0
14 TraesCS2D01G223600 chr5D 86.538 104 11 3 1235 1336 350676185 350676287 9.700000e-21 111.0
15 TraesCS2D01G223600 chr5D 82.353 102 14 4 1238 1337 350703975 350704074 5.880000e-13 86.1
16 TraesCS2D01G223600 chr5D 86.667 75 8 2 1258 1331 505818469 505818396 7.610000e-12 82.4
17 TraesCS2D01G223600 chr6D 96.205 448 17 0 2861 3308 55385430 55384983 0.000000e+00 734.0
18 TraesCS2D01G223600 chr6D 96.205 448 16 1 2861 3308 30224826 30224380 0.000000e+00 732.0
19 TraesCS2D01G223600 chr6D 94.344 389 12 5 1 380 86025777 86026164 3.680000e-164 588.0
20 TraesCS2D01G223600 chr6D 93.088 217 14 1 1 216 97187027 97187243 1.920000e-82 316.0
21 TraesCS2D01G223600 chr6D 84.466 103 5 2 289 380 86023637 86023535 1.260000e-14 91.6
22 TraesCS2D01G223600 chr4D 96.404 445 16 0 2861 3305 36426374 36426818 0.000000e+00 734.0
23 TraesCS2D01G223600 chr7D 96.180 445 17 0 2861 3305 29607797 29608241 0.000000e+00 728.0
24 TraesCS2D01G223600 chr7D 96.180 445 15 2 2861 3305 41494480 41494922 0.000000e+00 726.0
25 TraesCS2D01G223600 chr7D 90.414 532 31 12 2776 3305 37560162 37560675 0.000000e+00 682.0
26 TraesCS2D01G223600 chrUn 96.154 442 17 0 2861 3302 21698623 21699064 0.000000e+00 723.0
27 TraesCS2D01G223600 chr1A 88.395 405 13 11 1 380 528934021 528934416 1.080000e-124 457.0
28 TraesCS2D01G223600 chr1A 94.276 297 17 0 2480 2776 101760699 101760403 3.890000e-124 455.0
29 TraesCS2D01G223600 chr1A 88.333 300 34 1 2481 2779 31690735 31691034 3.140000e-95 359.0
30 TraesCS2D01G223600 chr1A 96.078 51 2 0 330 380 528932281 528932231 2.120000e-12 84.2
31 TraesCS2D01G223600 chr7A 94.276 297 17 0 2480 2776 406057282 406056986 3.890000e-124 455.0
32 TraesCS2D01G223600 chr6A 93.939 297 18 0 2480 2776 593548791 593548495 1.810000e-122 449.0
33 TraesCS2D01G223600 chr5A 90.459 283 27 0 2480 2762 501415748 501415466 1.120000e-99 374.0
34 TraesCS2D01G223600 chr5A 86.538 104 11 3 1235 1336 451138355 451138457 9.700000e-21 111.0
35 TraesCS2D01G223600 chr5A 82.353 102 14 4 1238 1337 451248290 451248389 5.880000e-13 86.1
36 TraesCS2D01G223600 chr3A 89.583 144 13 2 2776 2917 45514090 45514233 7.290000e-42 182.0
37 TraesCS2D01G223600 chr3A 93.407 91 6 0 290 380 554216531 554216621 5.760000e-28 135.0
38 TraesCS2D01G223600 chr5B 88.971 136 14 1 2776 2910 672233506 672233371 2.040000e-37 167.0
39 TraesCS2D01G223600 chr5B 85.714 140 15 5 2775 2912 710328701 710328837 3.440000e-30 143.0
40 TraesCS2D01G223600 chr5B 84.783 138 18 3 2776 2912 522132813 522132948 5.760000e-28 135.0
41 TraesCS2D01G223600 chr5B 87.500 104 10 3 1235 1336 411621830 411621932 2.090000e-22 117.0
42 TraesCS2D01G223600 chr5B 82.353 102 14 4 1238 1337 411757714 411757813 5.880000e-13 86.1
43 TraesCS2D01G223600 chr5B 86.667 75 8 2 1258 1331 635808601 635808528 7.610000e-12 82.4
44 TraesCS2D01G223600 chr5B 83.117 77 7 3 134 204 546814277 546814353 7.660000e-07 65.8
45 TraesCS2D01G223600 chr6B 85.507 138 17 3 2776 2912 652168145 652168280 1.240000e-29 141.0
46 TraesCS2D01G223600 chr6B 84.173 139 19 3 2775 2912 157942522 157942386 7.450000e-27 132.0
47 TraesCS2D01G223600 chr4A 84.672 137 19 2 2776 2912 656711411 656711545 5.760000e-28 135.0
48 TraesCS2D01G223600 chr3B 84.892 139 16 5 2776 2912 488374604 488374469 5.760000e-28 135.0
49 TraesCS2D01G223600 chr7B 84.444 135 19 2 2776 2910 749399803 749399671 7.450000e-27 132.0
50 TraesCS2D01G223600 chr1B 82.000 100 18 0 8 107 131795837 131795936 5.880000e-13 86.1
51 TraesCS2D01G223600 chr1B 94.595 37 2 0 129 165 136640502 136640538 1.280000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G223600 chr2D 190368661 190371968 3307 False 6109.0 6109 100.0000 1 3308 1 chr2D.!!$F1 3307
1 TraesCS2D01G223600 chr2A 204929249 204931320 2071 False 3308.0 3308 95.6100 386 2442 1 chr2A.!!$F2 2056
2 TraesCS2D01G223600 chr2B 247516843 247519181 2338 False 1641.5 2531 95.8215 399 2479 2 chr2B.!!$F1 2080
3 TraesCS2D01G223600 chr7D 37560162 37560675 513 False 682.0 682 90.4140 2776 3305 1 chr7D.!!$F2 529


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
59 60 0.028902 GGATTTATGTTGCCGGCGAC 59.971 55.0 35.68 35.68 0.0 5.19 F
60 61 0.028902 GATTTATGTTGCCGGCGACC 59.971 55.0 37.89 23.05 0.0 4.79 F
204 205 0.249868 CGGTGCCTCTGTTTCTGTGA 60.250 55.0 0.00 0.00 0.0 3.58 F
295 296 0.321034 TGCAGTGTGAAGCTAGCTGG 60.321 55.0 20.16 0.00 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1704 1982 0.179004 TGTTGGCGTTCTGGAATGGT 60.179 50.000 4.95 0.00 0.00 3.55 R
1992 2270 0.737715 GCAGCGTCACTAGGGACTTG 60.738 60.000 22.47 19.65 41.75 3.16 R
1993 2271 1.592223 GCAGCGTCACTAGGGACTT 59.408 57.895 22.47 8.28 41.75 3.01 R
2400 2678 3.380479 TTACACTCTGAACTCAACCGG 57.620 47.619 0.00 0.00 0.00 5.28 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.896133 CTGCCCATGCGTGCCATC 61.896 66.667 0.00 0.00 41.78 3.51
29 30 4.856801 GCGTGCCATCCCCGTGAT 62.857 66.667 0.00 0.00 0.00 3.06
30 31 2.588877 CGTGCCATCCCCGTGATC 60.589 66.667 0.00 0.00 0.00 2.92
31 32 2.589540 GTGCCATCCCCGTGATCA 59.410 61.111 0.00 0.00 0.00 2.92
32 33 1.819632 GTGCCATCCCCGTGATCAC 60.820 63.158 16.21 16.21 0.00 3.06
33 34 1.995066 TGCCATCCCCGTGATCACT 60.995 57.895 22.95 1.27 0.00 3.41
34 35 1.224592 GCCATCCCCGTGATCACTT 59.775 57.895 22.95 0.81 0.00 3.16
35 36 0.468226 GCCATCCCCGTGATCACTTA 59.532 55.000 22.95 6.53 0.00 2.24
36 37 1.072331 GCCATCCCCGTGATCACTTAT 59.928 52.381 22.95 8.46 0.00 1.73
37 38 2.872038 GCCATCCCCGTGATCACTTATC 60.872 54.545 22.95 0.00 34.93 1.75
38 39 2.634940 CCATCCCCGTGATCACTTATCT 59.365 50.000 22.95 3.06 35.45 1.98
39 40 3.555795 CCATCCCCGTGATCACTTATCTG 60.556 52.174 22.95 14.01 35.45 2.90
40 41 2.039418 TCCCCGTGATCACTTATCTGG 58.961 52.381 22.95 14.93 35.45 3.86
41 42 1.070758 CCCCGTGATCACTTATCTGGG 59.929 57.143 22.95 21.99 44.42 4.45
42 43 2.039418 CCCGTGATCACTTATCTGGGA 58.961 52.381 22.91 0.00 46.16 4.37
43 44 2.634940 CCCGTGATCACTTATCTGGGAT 59.365 50.000 22.91 0.00 46.16 3.85
44 45 3.071602 CCCGTGATCACTTATCTGGGATT 59.928 47.826 22.91 0.00 46.16 3.01
45 46 4.444876 CCCGTGATCACTTATCTGGGATTT 60.445 45.833 22.91 0.00 46.16 2.17
46 47 5.221641 CCCGTGATCACTTATCTGGGATTTA 60.222 44.000 22.91 0.00 46.16 1.40
47 48 6.467677 CCGTGATCACTTATCTGGGATTTAT 58.532 40.000 22.95 0.00 35.45 1.40
48 49 6.369890 CCGTGATCACTTATCTGGGATTTATG 59.630 42.308 22.95 1.80 35.45 1.90
49 50 6.931281 CGTGATCACTTATCTGGGATTTATGT 59.069 38.462 22.95 0.00 35.45 2.29
50 51 7.442364 CGTGATCACTTATCTGGGATTTATGTT 59.558 37.037 22.95 0.00 35.45 2.71
51 52 8.562892 GTGATCACTTATCTGGGATTTATGTTG 58.437 37.037 18.83 0.00 35.45 3.33
52 53 6.942532 TCACTTATCTGGGATTTATGTTGC 57.057 37.500 0.00 0.00 0.00 4.17
53 54 5.827797 TCACTTATCTGGGATTTATGTTGCC 59.172 40.000 0.00 0.00 0.00 4.52
54 55 4.821805 ACTTATCTGGGATTTATGTTGCCG 59.178 41.667 0.00 0.00 0.00 5.69
55 56 2.051334 TCTGGGATTTATGTTGCCGG 57.949 50.000 0.00 0.00 32.54 6.13
56 57 0.385390 CTGGGATTTATGTTGCCGGC 59.615 55.000 22.73 22.73 0.00 6.13
57 58 1.358759 GGGATTTATGTTGCCGGCG 59.641 57.895 23.90 0.00 0.00 6.46
58 59 1.098712 GGGATTTATGTTGCCGGCGA 61.099 55.000 23.90 19.26 0.00 5.54
59 60 0.028902 GGATTTATGTTGCCGGCGAC 59.971 55.000 35.68 35.68 0.00 5.19
60 61 0.028902 GATTTATGTTGCCGGCGACC 59.971 55.000 37.89 23.05 0.00 4.79
61 62 0.393808 ATTTATGTTGCCGGCGACCT 60.394 50.000 37.89 31.59 0.00 3.85
62 63 1.302383 TTTATGTTGCCGGCGACCTG 61.302 55.000 37.89 0.00 0.00 4.00
63 64 2.457743 TTATGTTGCCGGCGACCTGT 62.458 55.000 37.89 26.83 0.00 4.00
64 65 1.605971 TATGTTGCCGGCGACCTGTA 61.606 55.000 37.89 25.90 0.00 2.74
65 66 2.813908 GTTGCCGGCGACCTGTAG 60.814 66.667 33.16 0.00 0.00 2.74
66 67 4.077184 TTGCCGGCGACCTGTAGG 62.077 66.667 23.90 0.00 42.17 3.18
76 77 2.267961 CCTGTAGGTCGGGGTTGC 59.732 66.667 0.00 0.00 38.86 4.17
77 78 2.125673 CTGTAGGTCGGGGTTGCG 60.126 66.667 0.00 0.00 0.00 4.85
78 79 3.659089 CTGTAGGTCGGGGTTGCGG 62.659 68.421 0.00 0.00 0.00 5.69
93 94 4.514577 CGGCTGGCGGTGACCTAG 62.515 72.222 16.53 0.00 0.00 3.02
94 95 4.840005 GGCTGGCGGTGACCTAGC 62.840 72.222 12.14 12.14 34.83 3.42
99 100 2.109181 GCGGTGACCTAGCCATCC 59.891 66.667 0.00 0.00 0.00 3.51
100 101 2.822399 CGGTGACCTAGCCATCCC 59.178 66.667 0.00 0.00 0.00 3.85
101 102 2.822399 GGTGACCTAGCCATCCCG 59.178 66.667 0.00 0.00 0.00 5.14
102 103 2.064581 GGTGACCTAGCCATCCCGT 61.065 63.158 0.00 0.00 0.00 5.28
103 104 1.442148 GTGACCTAGCCATCCCGTC 59.558 63.158 0.00 0.00 0.00 4.79
104 105 1.760875 TGACCTAGCCATCCCGTCC 60.761 63.158 0.00 0.00 0.00 4.79
105 106 2.838225 ACCTAGCCATCCCGTCCG 60.838 66.667 0.00 0.00 0.00 4.79
106 107 3.616721 CCTAGCCATCCCGTCCGG 61.617 72.222 0.00 0.00 0.00 5.14
107 108 4.301027 CTAGCCATCCCGTCCGGC 62.301 72.222 0.00 0.00 46.62 6.13
127 128 4.162690 GGGTAGCGCAGGTGGGAG 62.163 72.222 11.47 0.00 40.22 4.30
128 129 3.075005 GGTAGCGCAGGTGGGAGA 61.075 66.667 11.47 0.00 40.22 3.71
129 130 2.496817 GTAGCGCAGGTGGGAGAG 59.503 66.667 11.47 0.00 40.22 3.20
130 131 2.759973 TAGCGCAGGTGGGAGAGG 60.760 66.667 11.47 0.00 40.22 3.69
131 132 3.602075 TAGCGCAGGTGGGAGAGGT 62.602 63.158 11.47 0.00 40.22 3.85
132 133 4.767255 GCGCAGGTGGGAGAGGTG 62.767 72.222 0.30 0.00 0.00 4.00
133 134 4.767255 CGCAGGTGGGAGAGGTGC 62.767 72.222 0.00 0.00 0.00 5.01
134 135 4.767255 GCAGGTGGGAGAGGTGCG 62.767 72.222 0.00 0.00 0.00 5.34
135 136 2.997315 CAGGTGGGAGAGGTGCGA 60.997 66.667 0.00 0.00 0.00 5.10
136 137 2.681778 AGGTGGGAGAGGTGCGAG 60.682 66.667 0.00 0.00 0.00 5.03
137 138 3.775654 GGTGGGAGAGGTGCGAGG 61.776 72.222 0.00 0.00 0.00 4.63
138 139 2.680352 GTGGGAGAGGTGCGAGGA 60.680 66.667 0.00 0.00 0.00 3.71
139 140 2.119611 TGGGAGAGGTGCGAGGAA 59.880 61.111 0.00 0.00 0.00 3.36
140 141 1.984570 TGGGAGAGGTGCGAGGAAG 60.985 63.158 0.00 0.00 0.00 3.46
141 142 2.726351 GGGAGAGGTGCGAGGAAGG 61.726 68.421 0.00 0.00 0.00 3.46
142 143 2.726351 GGAGAGGTGCGAGGAAGGG 61.726 68.421 0.00 0.00 0.00 3.95
143 144 2.685380 AGAGGTGCGAGGAAGGGG 60.685 66.667 0.00 0.00 0.00 4.79
144 145 2.683933 GAGGTGCGAGGAAGGGGA 60.684 66.667 0.00 0.00 0.00 4.81
145 146 2.685380 AGGTGCGAGGAAGGGGAG 60.685 66.667 0.00 0.00 0.00 4.30
146 147 3.787001 GGTGCGAGGAAGGGGAGG 61.787 72.222 0.00 0.00 0.00 4.30
147 148 2.683933 GTGCGAGGAAGGGGAGGA 60.684 66.667 0.00 0.00 0.00 3.71
148 149 2.683933 TGCGAGGAAGGGGAGGAC 60.684 66.667 0.00 0.00 0.00 3.85
149 150 3.839432 GCGAGGAAGGGGAGGACG 61.839 72.222 0.00 0.00 0.00 4.79
150 151 3.148279 CGAGGAAGGGGAGGACGG 61.148 72.222 0.00 0.00 0.00 4.79
151 152 2.764547 GAGGAAGGGGAGGACGGG 60.765 72.222 0.00 0.00 0.00 5.28
152 153 3.281787 AGGAAGGGGAGGACGGGA 61.282 66.667 0.00 0.00 0.00 5.14
153 154 2.764547 GGAAGGGGAGGACGGGAG 60.765 72.222 0.00 0.00 0.00 4.30
154 155 2.764547 GAAGGGGAGGACGGGAGG 60.765 72.222 0.00 0.00 0.00 4.30
155 156 4.416601 AAGGGGAGGACGGGAGGG 62.417 72.222 0.00 0.00 0.00 4.30
158 159 4.173701 GGGAGGACGGGAGGGGAT 62.174 72.222 0.00 0.00 0.00 3.85
159 160 2.844839 GGAGGACGGGAGGGGATG 60.845 72.222 0.00 0.00 0.00 3.51
160 161 3.551407 GAGGACGGGAGGGGATGC 61.551 72.222 0.00 0.00 0.00 3.91
199 200 3.423154 CCGCGGTGCCTCTGTTTC 61.423 66.667 19.50 0.00 0.00 2.78
200 201 2.357517 CGCGGTGCCTCTGTTTCT 60.358 61.111 0.00 0.00 0.00 2.52
201 202 2.671177 CGCGGTGCCTCTGTTTCTG 61.671 63.158 0.00 0.00 0.00 3.02
202 203 1.598130 GCGGTGCCTCTGTTTCTGT 60.598 57.895 0.00 0.00 0.00 3.41
203 204 1.845809 GCGGTGCCTCTGTTTCTGTG 61.846 60.000 0.00 0.00 0.00 3.66
204 205 0.249868 CGGTGCCTCTGTTTCTGTGA 60.250 55.000 0.00 0.00 0.00 3.58
205 206 1.517242 GGTGCCTCTGTTTCTGTGAG 58.483 55.000 0.00 0.00 0.00 3.51
207 208 0.397941 TGCCTCTGTTTCTGTGAGGG 59.602 55.000 9.85 0.00 45.41 4.30
208 209 0.398318 GCCTCTGTTTCTGTGAGGGT 59.602 55.000 9.85 0.00 45.41 4.34
209 210 1.623811 GCCTCTGTTTCTGTGAGGGTA 59.376 52.381 9.85 0.00 45.41 3.69
210 211 2.038557 GCCTCTGTTTCTGTGAGGGTAA 59.961 50.000 9.85 0.00 45.41 2.85
211 212 3.866449 GCCTCTGTTTCTGTGAGGGTAAG 60.866 52.174 9.85 0.00 45.41 2.34
212 213 3.325135 CCTCTGTTTCTGTGAGGGTAAGT 59.675 47.826 0.00 0.00 42.55 2.24
213 214 4.310769 CTCTGTTTCTGTGAGGGTAAGTG 58.689 47.826 0.00 0.00 0.00 3.16
214 215 3.071023 TCTGTTTCTGTGAGGGTAAGTGG 59.929 47.826 0.00 0.00 0.00 4.00
215 216 2.105821 TGTTTCTGTGAGGGTAAGTGGG 59.894 50.000 0.00 0.00 0.00 4.61
216 217 2.370849 GTTTCTGTGAGGGTAAGTGGGA 59.629 50.000 0.00 0.00 0.00 4.37
217 218 2.409064 TCTGTGAGGGTAAGTGGGAA 57.591 50.000 0.00 0.00 0.00 3.97
218 219 1.975680 TCTGTGAGGGTAAGTGGGAAC 59.024 52.381 0.00 0.00 0.00 3.62
219 220 1.978580 CTGTGAGGGTAAGTGGGAACT 59.021 52.381 0.00 0.00 0.00 3.01
220 221 1.697432 TGTGAGGGTAAGTGGGAACTG 59.303 52.381 0.00 0.00 0.00 3.16
221 222 1.003233 GTGAGGGTAAGTGGGAACTGG 59.997 57.143 0.00 0.00 0.00 4.00
222 223 0.618981 GAGGGTAAGTGGGAACTGGG 59.381 60.000 0.00 0.00 0.00 4.45
223 224 1.001269 GGGTAAGTGGGAACTGGGC 60.001 63.158 0.00 0.00 0.00 5.36
224 225 1.498176 GGGTAAGTGGGAACTGGGCT 61.498 60.000 0.00 0.00 0.00 5.19
225 226 0.322546 GGTAAGTGGGAACTGGGCTG 60.323 60.000 0.00 0.00 0.00 4.85
226 227 0.690762 GTAAGTGGGAACTGGGCTGA 59.309 55.000 0.00 0.00 0.00 4.26
227 228 1.282157 GTAAGTGGGAACTGGGCTGAT 59.718 52.381 0.00 0.00 0.00 2.90
228 229 1.668826 AAGTGGGAACTGGGCTGATA 58.331 50.000 0.00 0.00 0.00 2.15
229 230 1.898863 AGTGGGAACTGGGCTGATAT 58.101 50.000 0.00 0.00 0.00 1.63
230 231 3.060479 AGTGGGAACTGGGCTGATATA 57.940 47.619 0.00 0.00 0.00 0.86
231 232 2.975489 AGTGGGAACTGGGCTGATATAG 59.025 50.000 0.00 0.00 0.00 1.31
291 292 4.558538 AAAAACTGCAGTGTGAAGCTAG 57.441 40.909 22.49 0.00 0.00 3.42
292 293 1.517242 AACTGCAGTGTGAAGCTAGC 58.483 50.000 22.49 6.62 0.00 3.42
293 294 0.683973 ACTGCAGTGTGAAGCTAGCT 59.316 50.000 20.97 12.68 0.00 3.32
294 295 1.077123 CTGCAGTGTGAAGCTAGCTG 58.923 55.000 20.16 5.70 0.00 4.24
295 296 0.321034 TGCAGTGTGAAGCTAGCTGG 60.321 55.000 20.16 0.00 0.00 4.85
296 297 0.321122 GCAGTGTGAAGCTAGCTGGT 60.321 55.000 20.16 2.53 0.00 4.00
297 298 1.879796 GCAGTGTGAAGCTAGCTGGTT 60.880 52.381 20.16 1.61 39.32 3.67
298 299 2.612972 GCAGTGTGAAGCTAGCTGGTTA 60.613 50.000 20.16 2.78 36.40 2.85
299 300 2.996621 CAGTGTGAAGCTAGCTGGTTAC 59.003 50.000 20.16 15.13 36.40 2.50
300 301 2.028020 AGTGTGAAGCTAGCTGGTTACC 60.028 50.000 20.16 5.26 36.40 2.85
301 302 2.028020 GTGTGAAGCTAGCTGGTTACCT 60.028 50.000 20.16 0.00 36.40 3.08
302 303 3.194968 GTGTGAAGCTAGCTGGTTACCTA 59.805 47.826 20.16 0.00 36.40 3.08
303 304 4.030913 TGTGAAGCTAGCTGGTTACCTAT 58.969 43.478 20.16 0.00 36.40 2.57
304 305 5.068723 GTGTGAAGCTAGCTGGTTACCTATA 59.931 44.000 20.16 0.00 36.40 1.31
305 306 5.839063 TGTGAAGCTAGCTGGTTACCTATAT 59.161 40.000 20.16 0.00 36.40 0.86
306 307 6.015350 TGTGAAGCTAGCTGGTTACCTATATC 60.015 42.308 20.16 7.84 36.40 1.63
307 308 6.209788 GTGAAGCTAGCTGGTTACCTATATCT 59.790 42.308 20.16 0.00 36.40 1.98
308 309 6.209589 TGAAGCTAGCTGGTTACCTATATCTG 59.790 42.308 20.16 0.00 36.40 2.90
309 310 5.646215 AGCTAGCTGGTTACCTATATCTGT 58.354 41.667 18.57 0.00 0.00 3.41
310 311 5.478679 AGCTAGCTGGTTACCTATATCTGTG 59.521 44.000 18.57 0.00 0.00 3.66
311 312 5.336849 GCTAGCTGGTTACCTATATCTGTGG 60.337 48.000 7.70 0.00 0.00 4.17
312 313 3.325135 AGCTGGTTACCTATATCTGTGGC 59.675 47.826 2.07 0.00 0.00 5.01
313 314 3.071023 GCTGGTTACCTATATCTGTGGCA 59.929 47.826 2.07 0.00 0.00 4.92
314 315 4.263068 GCTGGTTACCTATATCTGTGGCAT 60.263 45.833 2.07 0.00 0.00 4.40
315 316 5.227569 TGGTTACCTATATCTGTGGCATG 57.772 43.478 2.07 0.00 0.00 4.06
316 317 4.003648 GGTTACCTATATCTGTGGCATGC 58.996 47.826 9.90 9.90 0.00 4.06
317 318 4.504864 GGTTACCTATATCTGTGGCATGCA 60.505 45.833 21.36 2.54 0.00 3.96
318 319 5.248640 GTTACCTATATCTGTGGCATGCAT 58.751 41.667 21.36 6.35 0.00 3.96
319 320 3.682696 ACCTATATCTGTGGCATGCATG 58.317 45.455 22.70 22.70 0.00 4.06
340 341 4.476361 GCATGGTTGCGTTTAGGC 57.524 55.556 0.00 0.00 39.49 3.93
341 342 1.153842 GCATGGTTGCGTTTAGGCC 60.154 57.895 0.00 0.00 39.49 5.19
342 343 1.136565 CATGGTTGCGTTTAGGCCG 59.863 57.895 0.00 0.00 0.00 6.13
343 344 2.043980 ATGGTTGCGTTTAGGCCGG 61.044 57.895 0.00 0.00 0.00 6.13
344 345 2.358984 GGTTGCGTTTAGGCCGGA 60.359 61.111 5.05 0.00 0.00 5.14
345 346 2.683859 GGTTGCGTTTAGGCCGGAC 61.684 63.158 5.05 0.00 0.00 4.79
346 347 2.739287 TTGCGTTTAGGCCGGACG 60.739 61.111 19.70 19.70 39.61 4.79
347 348 4.745751 TGCGTTTAGGCCGGACGG 62.746 66.667 23.35 6.35 37.28 4.79
348 349 4.440127 GCGTTTAGGCCGGACGGA 62.440 66.667 23.35 0.00 37.28 4.69
349 350 2.507769 CGTTTAGGCCGGACGGAC 60.508 66.667 15.99 12.63 45.79 4.79
357 358 4.657824 CCGGACGGACGTGTGCTT 62.658 66.667 4.40 0.00 37.50 3.91
358 359 3.403057 CGGACGGACGTGTGCTTG 61.403 66.667 0.53 0.00 0.00 4.01
359 360 3.712881 GGACGGACGTGTGCTTGC 61.713 66.667 0.53 0.00 0.00 4.01
360 361 4.059459 GACGGACGTGTGCTTGCG 62.059 66.667 0.53 0.00 34.17 4.85
361 362 4.884257 ACGGACGTGTGCTTGCGT 62.884 61.111 0.00 0.21 44.50 5.24
362 363 3.636043 CGGACGTGTGCTTGCGTT 61.636 61.111 0.00 0.00 41.70 4.84
363 364 2.713154 GGACGTGTGCTTGCGTTT 59.287 55.556 0.00 0.00 41.70 3.60
364 365 1.063488 GGACGTGTGCTTGCGTTTT 59.937 52.632 0.00 0.00 41.70 2.43
365 366 1.199852 GGACGTGTGCTTGCGTTTTG 61.200 55.000 0.00 0.00 41.70 2.44
366 367 1.199852 GACGTGTGCTTGCGTTTTGG 61.200 55.000 0.00 0.00 41.70 3.28
367 368 1.226547 CGTGTGCTTGCGTTTTGGT 60.227 52.632 0.00 0.00 0.00 3.67
368 369 0.800300 CGTGTGCTTGCGTTTTGGTT 60.800 50.000 0.00 0.00 0.00 3.67
369 370 0.920664 GTGTGCTTGCGTTTTGGTTC 59.079 50.000 0.00 0.00 0.00 3.62
370 371 0.814457 TGTGCTTGCGTTTTGGTTCT 59.186 45.000 0.00 0.00 0.00 3.01
371 372 1.203523 TGTGCTTGCGTTTTGGTTCTT 59.796 42.857 0.00 0.00 0.00 2.52
372 373 2.267426 GTGCTTGCGTTTTGGTTCTTT 58.733 42.857 0.00 0.00 0.00 2.52
373 374 2.281498 GTGCTTGCGTTTTGGTTCTTTC 59.719 45.455 0.00 0.00 0.00 2.62
374 375 1.516864 GCTTGCGTTTTGGTTCTTTCG 59.483 47.619 0.00 0.00 0.00 3.46
375 376 2.792749 CTTGCGTTTTGGTTCTTTCGT 58.207 42.857 0.00 0.00 0.00 3.85
376 377 2.923605 TGCGTTTTGGTTCTTTCGTT 57.076 40.000 0.00 0.00 0.00 3.85
377 378 3.219052 TGCGTTTTGGTTCTTTCGTTT 57.781 38.095 0.00 0.00 0.00 3.60
378 379 2.917971 TGCGTTTTGGTTCTTTCGTTTG 59.082 40.909 0.00 0.00 0.00 2.93
379 380 3.172824 GCGTTTTGGTTCTTTCGTTTGA 58.827 40.909 0.00 0.00 0.00 2.69
380 381 3.794564 GCGTTTTGGTTCTTTCGTTTGAT 59.205 39.130 0.00 0.00 0.00 2.57
381 382 4.317069 GCGTTTTGGTTCTTTCGTTTGATG 60.317 41.667 0.00 0.00 0.00 3.07
382 383 5.031578 CGTTTTGGTTCTTTCGTTTGATGA 58.968 37.500 0.00 0.00 0.00 2.92
383 384 5.685511 CGTTTTGGTTCTTTCGTTTGATGAT 59.314 36.000 0.00 0.00 0.00 2.45
384 385 6.198216 CGTTTTGGTTCTTTCGTTTGATGATT 59.802 34.615 0.00 0.00 0.00 2.57
474 478 7.473735 TTGCACATATCACCAATTTTTCCTA 57.526 32.000 0.00 0.00 0.00 2.94
554 565 1.134788 CCCAACGCGGTTCTCTCTTAT 60.135 52.381 12.47 0.00 0.00 1.73
567 578 9.352784 CGGTTCTCTCTTATTATCTGATTGATC 57.647 37.037 0.00 0.00 36.65 2.92
649 660 2.881539 ATCCGGCGACCACGAGTCTA 62.882 60.000 9.30 0.00 43.91 2.59
830 841 1.668101 TTTCCCGGCAACACACCAAC 61.668 55.000 0.00 0.00 0.00 3.77
871 1147 3.189910 TGTGCTTGACCTAGTACGTACTG 59.810 47.826 33.23 21.78 37.10 2.74
960 1238 9.754382 ATTTCATTACATATTCCATTCTTGTGC 57.246 29.630 0.00 0.00 0.00 4.57
962 1240 8.467963 TCATTACATATTCCATTCTTGTGCAT 57.532 30.769 0.00 0.00 0.00 3.96
970 1248 2.190161 CATTCTTGTGCATTGCATCGG 58.810 47.619 15.49 7.84 41.91 4.18
973 1251 0.806868 CTTGTGCATTGCATCGGTCT 59.193 50.000 15.49 0.00 41.91 3.85
982 1260 0.747255 TGCATCGGTCTTCTAGCTCC 59.253 55.000 0.00 0.00 0.00 4.70
991 1269 1.678627 TCTTCTAGCTCCAGACATCGC 59.321 52.381 0.00 0.00 0.00 4.58
1704 1982 1.324383 TGTTCTCGTACTGCCTCACA 58.676 50.000 0.00 0.00 0.00 3.58
1714 1992 0.325933 CTGCCTCACACCATTCCAGA 59.674 55.000 0.00 0.00 0.00 3.86
1733 2011 3.425713 CGCCAACAGCACGAGCAT 61.426 61.111 7.77 0.00 45.49 3.79
2197 2475 1.971167 GCAATGCGGAACCAGACCA 60.971 57.895 0.00 0.00 0.00 4.02
2199 2477 0.734889 CAATGCGGAACCAGACCATC 59.265 55.000 0.00 0.00 0.00 3.51
2311 2589 0.740164 ATGCAGCACGCTCTGAAGAG 60.740 55.000 0.00 2.81 44.75 2.85
2342 2620 6.324042 ACAAATATGTGTGTACATGCATGTG 58.676 36.000 36.72 19.96 46.63 3.21
2345 2623 2.095110 ATGTGTGTACATGCATGTGTGC 60.095 45.455 36.72 26.27 45.54 4.57
2415 2697 3.386768 TTTCTCCGGTTGAGTTCAGAG 57.613 47.619 0.00 0.00 42.12 3.35
2432 2714 8.034058 AGTTCAGAGTGTAAATTGTATGCTTC 57.966 34.615 0.00 0.00 0.00 3.86
2448 2730 3.351740 TGCTTCAGATTTATTTGCGGGA 58.648 40.909 0.00 0.00 0.00 5.14
2475 2757 1.816863 CTAGTGCCCGCCCGACATAT 61.817 60.000 0.00 0.00 0.00 1.78
2479 2761 0.821517 TGCCCGCCCGACATATATAG 59.178 55.000 0.00 0.00 0.00 1.31
2480 2762 0.104304 GCCCGCCCGACATATATAGG 59.896 60.000 0.00 0.00 0.00 2.57
2481 2763 1.771565 CCCGCCCGACATATATAGGA 58.228 55.000 0.54 0.00 0.00 2.94
2482 2764 1.407979 CCCGCCCGACATATATAGGAC 59.592 57.143 0.54 0.00 0.00 3.85
2483 2765 2.097036 CCGCCCGACATATATAGGACA 58.903 52.381 0.54 0.00 0.00 4.02
2484 2766 2.693591 CCGCCCGACATATATAGGACAT 59.306 50.000 0.54 0.00 0.00 3.06
2485 2767 3.887110 CCGCCCGACATATATAGGACATA 59.113 47.826 0.54 0.00 0.00 2.29
2486 2768 4.523173 CCGCCCGACATATATAGGACATAT 59.477 45.833 0.54 0.00 0.00 1.78
2487 2769 5.010719 CCGCCCGACATATATAGGACATATT 59.989 44.000 0.54 0.00 0.00 1.28
2488 2770 5.920840 CGCCCGACATATATAGGACATATTG 59.079 44.000 0.54 0.00 0.00 1.90
2489 2771 5.696724 GCCCGACATATATAGGACATATTGC 59.303 44.000 0.54 0.00 0.00 3.56
2490 2772 5.920840 CCCGACATATATAGGACATATTGCG 59.079 44.000 0.54 0.00 0.00 4.85
2491 2773 5.402568 CCGACATATATAGGACATATTGCGC 59.597 44.000 0.00 0.00 0.00 6.09
2492 2774 5.402568 CGACATATATAGGACATATTGCGCC 59.597 44.000 4.18 0.00 0.00 6.53
2493 2775 5.289595 ACATATATAGGACATATTGCGCCG 58.710 41.667 4.18 0.00 0.00 6.46
2494 2776 2.004583 TATAGGACATATTGCGCCGC 57.995 50.000 4.18 0.00 0.00 6.53
2495 2777 0.673644 ATAGGACATATTGCGCCGCC 60.674 55.000 6.63 0.00 0.00 6.13
2496 2778 1.754380 TAGGACATATTGCGCCGCCT 61.754 55.000 6.63 3.48 0.00 5.52
2497 2779 2.607892 GGACATATTGCGCCGCCTC 61.608 63.158 6.63 0.00 0.00 4.70
2498 2780 2.943345 GACATATTGCGCCGCCTCG 61.943 63.158 6.63 0.00 0.00 4.63
2516 2798 3.998672 GGTTCGGACCACGCTGGA 61.999 66.667 8.43 0.00 45.77 3.86
2517 2799 2.432628 GTTCGGACCACGCTGGAG 60.433 66.667 10.46 3.00 40.96 3.86
2518 2800 3.691342 TTCGGACCACGCTGGAGG 61.691 66.667 10.46 0.00 40.96 4.30
2521 2803 3.775654 GGACCACGCTGGAGGGAG 61.776 72.222 10.46 0.00 40.96 4.30
2522 2804 2.997897 GACCACGCTGGAGGGAGT 60.998 66.667 10.46 0.00 40.96 3.85
2523 2805 3.302347 GACCACGCTGGAGGGAGTG 62.302 68.421 10.46 0.00 40.96 3.51
2524 2806 4.087892 CCACGCTGGAGGGAGTGG 62.088 72.222 3.33 3.33 46.92 4.00
2525 2807 4.087892 CACGCTGGAGGGAGTGGG 62.088 72.222 0.00 0.00 34.29 4.61
2526 2808 4.640690 ACGCTGGAGGGAGTGGGT 62.641 66.667 0.00 0.00 0.00 4.51
2527 2809 3.775654 CGCTGGAGGGAGTGGGTC 61.776 72.222 0.00 0.00 0.00 4.46
2528 2810 3.403558 GCTGGAGGGAGTGGGTCC 61.404 72.222 0.00 0.00 46.10 4.46
2540 2822 3.021356 TGGGTCCCCATCCTACTTG 57.979 57.895 5.13 0.00 41.89 3.16
2541 2823 0.623324 TGGGTCCCCATCCTACTTGG 60.623 60.000 5.13 0.00 41.89 3.61
2542 2824 1.532238 GGTCCCCATCCTACTTGGC 59.468 63.158 0.00 0.00 35.26 4.52
2543 2825 1.279025 GGTCCCCATCCTACTTGGCA 61.279 60.000 0.00 0.00 35.26 4.92
2544 2826 0.107165 GTCCCCATCCTACTTGGCAC 60.107 60.000 0.00 0.00 35.26 5.01
2545 2827 1.153168 CCCCATCCTACTTGGCACG 60.153 63.158 0.00 0.00 35.26 5.34
2546 2828 1.153168 CCCATCCTACTTGGCACGG 60.153 63.158 0.00 0.00 35.26 4.94
2547 2829 1.819632 CCATCCTACTTGGCACGGC 60.820 63.158 0.00 0.00 35.26 5.68
2548 2830 1.078497 CATCCTACTTGGCACGGCA 60.078 57.895 0.00 0.00 35.26 5.69
2549 2831 0.676466 CATCCTACTTGGCACGGCAA 60.676 55.000 5.85 5.85 35.26 4.52
2550 2832 0.392998 ATCCTACTTGGCACGGCAAG 60.393 55.000 26.40 26.40 35.26 4.01
2551 2833 1.302511 CCTACTTGGCACGGCAAGT 60.303 57.895 32.83 32.83 43.24 3.16
2552 2834 0.036765 CCTACTTGGCACGGCAAGTA 60.037 55.000 31.86 31.86 41.34 2.24
2553 2835 1.076332 CTACTTGGCACGGCAAGTAC 58.924 55.000 31.07 0.00 41.34 2.73
2554 2836 0.668096 TACTTGGCACGGCAAGTACG 60.668 55.000 31.07 13.46 41.34 3.67
2555 2837 3.308878 CTTGGCACGGCAAGTACGC 62.309 63.158 21.60 0.00 34.00 4.42
2563 2845 3.788766 GCAAGTACGCGGGTGCTG 61.789 66.667 23.02 17.01 39.20 4.41
2564 2846 3.788766 CAAGTACGCGGGTGCTGC 61.789 66.667 23.02 7.04 39.20 5.25
2565 2847 4.003788 AAGTACGCGGGTGCTGCT 62.004 61.111 23.02 6.54 39.20 4.24
2566 2848 3.934391 AAGTACGCGGGTGCTGCTC 62.934 63.158 23.02 0.00 39.20 4.26
2567 2849 4.735132 GTACGCGGGTGCTGCTCA 62.735 66.667 16.34 0.00 39.65 4.26
2568 2850 3.997397 TACGCGGGTGCTGCTCAA 61.997 61.111 16.34 0.00 39.65 3.02
2578 2860 2.345244 CTGCTCAACGGCTGTCCT 59.655 61.111 0.00 0.00 0.00 3.85
2579 2861 2.031012 TGCTCAACGGCTGTCCTG 59.969 61.111 0.00 0.00 0.00 3.86
2580 2862 2.743928 GCTCAACGGCTGTCCTGG 60.744 66.667 0.00 0.00 0.00 4.45
2581 2863 3.059982 CTCAACGGCTGTCCTGGA 58.940 61.111 0.00 0.00 0.00 3.86
2582 2864 1.374758 CTCAACGGCTGTCCTGGAC 60.375 63.158 19.96 19.96 0.00 4.02
2583 2865 2.358737 CAACGGCTGTCCTGGACC 60.359 66.667 23.42 9.31 0.00 4.46
2588 2870 4.767255 GCTGTCCTGGACCGCCTG 62.767 72.222 26.93 12.46 36.93 4.85
2589 2871 3.314331 CTGTCCTGGACCGCCTGT 61.314 66.667 23.42 0.00 34.31 4.00
2590 2872 3.302347 CTGTCCTGGACCGCCTGTC 62.302 68.421 23.42 0.00 43.67 3.51
2591 2873 3.311110 GTCCTGGACCGCCTGTCA 61.311 66.667 16.14 0.00 46.38 3.58
2592 2874 3.311110 TCCTGGACCGCCTGTCAC 61.311 66.667 0.00 0.00 46.38 3.67
2593 2875 3.314331 CCTGGACCGCCTGTCACT 61.314 66.667 3.70 0.00 46.38 3.41
2594 2876 2.262915 CTGGACCGCCTGTCACTC 59.737 66.667 3.70 0.00 46.38 3.51
2595 2877 2.523168 TGGACCGCCTGTCACTCA 60.523 61.111 3.70 0.00 46.38 3.41
2596 2878 2.048127 GGACCGCCTGTCACTCAC 60.048 66.667 3.70 0.00 46.38 3.51
2597 2879 2.574955 GGACCGCCTGTCACTCACT 61.575 63.158 3.70 0.00 46.38 3.41
2598 2880 1.373497 GACCGCCTGTCACTCACTG 60.373 63.158 0.00 0.00 43.85 3.66
2599 2881 2.740055 CCGCCTGTCACTCACTGC 60.740 66.667 0.00 0.00 0.00 4.40
2600 2882 2.029518 CGCCTGTCACTCACTGCA 59.970 61.111 0.00 0.00 0.00 4.41
2601 2883 1.595109 CGCCTGTCACTCACTGCAA 60.595 57.895 0.00 0.00 0.00 4.08
2602 2884 1.563435 CGCCTGTCACTCACTGCAAG 61.563 60.000 0.00 0.00 42.29 4.01
2603 2885 1.233285 GCCTGTCACTCACTGCAAGG 61.233 60.000 0.00 0.00 39.30 3.61
2604 2886 0.604780 CCTGTCACTCACTGCAAGGG 60.605 60.000 0.00 0.00 40.34 3.95
2605 2887 0.604780 CTGTCACTCACTGCAAGGGG 60.605 60.000 0.00 0.00 38.52 4.79
2606 2888 1.968540 GTCACTCACTGCAAGGGGC 60.969 63.158 0.00 0.00 38.52 5.80
2607 2889 2.149383 TCACTCACTGCAAGGGGCT 61.149 57.895 0.00 0.00 38.52 5.19
2608 2890 1.673665 CACTCACTGCAAGGGGCTC 60.674 63.158 0.00 0.00 38.52 4.70
2609 2891 1.845205 ACTCACTGCAAGGGGCTCT 60.845 57.895 0.00 0.00 38.52 4.09
2610 2892 1.376942 CTCACTGCAAGGGGCTCTG 60.377 63.158 0.00 0.00 38.52 3.35
2611 2893 2.360852 CACTGCAAGGGGCTCTGG 60.361 66.667 0.00 0.00 45.15 3.86
2612 2894 4.357279 ACTGCAAGGGGCTCTGGC 62.357 66.667 6.86 6.86 45.15 4.85
2614 2896 4.355720 TGCAAGGGGCTCTGGCAG 62.356 66.667 13.80 8.58 46.89 4.85
2616 2898 4.437587 CAAGGGGCTCTGGCAGGG 62.438 72.222 15.73 13.42 40.87 4.45
2621 2903 4.925861 GGCTCTGGCAGGGCGATC 62.926 72.222 31.44 15.55 40.87 3.69
2622 2904 4.925861 GCTCTGGCAGGGCGATCC 62.926 72.222 25.64 0.00 38.54 3.36
2623 2905 4.598894 CTCTGGCAGGGCGATCCG 62.599 72.222 15.73 0.00 41.52 4.18
2627 2909 4.796495 GGCAGGGCGATCCGGTTT 62.796 66.667 0.00 0.00 41.52 3.27
2628 2910 3.202706 GCAGGGCGATCCGGTTTC 61.203 66.667 0.00 0.00 41.52 2.78
2629 2911 2.584608 CAGGGCGATCCGGTTTCT 59.415 61.111 0.00 0.00 41.52 2.52
2630 2912 1.521681 CAGGGCGATCCGGTTTCTC 60.522 63.158 0.00 0.00 41.52 2.87
2631 2913 2.203029 GGGCGATCCGGTTTCTCC 60.203 66.667 0.00 4.44 0.00 3.71
2632 2914 2.203029 GGCGATCCGGTTTCTCCC 60.203 66.667 0.00 0.07 0.00 4.30
2633 2915 2.582436 GCGATCCGGTTTCTCCCA 59.418 61.111 0.00 0.00 0.00 4.37
2634 2916 1.146263 GCGATCCGGTTTCTCCCAT 59.854 57.895 0.00 0.00 0.00 4.00
2635 2917 1.160329 GCGATCCGGTTTCTCCCATG 61.160 60.000 0.00 0.00 0.00 3.66
2636 2918 0.178068 CGATCCGGTTTCTCCCATGT 59.822 55.000 0.00 0.00 0.00 3.21
2637 2919 1.406887 CGATCCGGTTTCTCCCATGTT 60.407 52.381 0.00 0.00 0.00 2.71
2638 2920 2.017049 GATCCGGTTTCTCCCATGTTG 58.983 52.381 0.00 0.00 0.00 3.33
2639 2921 0.768622 TCCGGTTTCTCCCATGTTGT 59.231 50.000 0.00 0.00 0.00 3.32
2640 2922 1.144093 TCCGGTTTCTCCCATGTTGTT 59.856 47.619 0.00 0.00 0.00 2.83
2641 2923 1.960689 CCGGTTTCTCCCATGTTGTTT 59.039 47.619 0.00 0.00 0.00 2.83
2642 2924 2.288152 CCGGTTTCTCCCATGTTGTTTG 60.288 50.000 0.00 0.00 0.00 2.93
2643 2925 2.360801 CGGTTTCTCCCATGTTGTTTGT 59.639 45.455 0.00 0.00 0.00 2.83
2644 2926 3.550030 CGGTTTCTCCCATGTTGTTTGTC 60.550 47.826 0.00 0.00 0.00 3.18
2645 2927 3.243737 GGTTTCTCCCATGTTGTTTGTCC 60.244 47.826 0.00 0.00 0.00 4.02
2646 2928 3.593442 TTCTCCCATGTTGTTTGTCCT 57.407 42.857 0.00 0.00 0.00 3.85
2647 2929 2.862541 TCTCCCATGTTGTTTGTCCTG 58.137 47.619 0.00 0.00 0.00 3.86
2648 2930 1.888512 CTCCCATGTTGTTTGTCCTGG 59.111 52.381 0.00 0.00 0.00 4.45
2649 2931 1.216678 TCCCATGTTGTTTGTCCTGGT 59.783 47.619 0.00 0.00 0.00 4.00
2650 2932 1.340889 CCCATGTTGTTTGTCCTGGTG 59.659 52.381 0.00 0.00 0.00 4.17
2651 2933 2.305928 CCATGTTGTTTGTCCTGGTGA 58.694 47.619 0.00 0.00 0.00 4.02
2652 2934 2.892852 CCATGTTGTTTGTCCTGGTGAT 59.107 45.455 0.00 0.00 0.00 3.06
2653 2935 3.321682 CCATGTTGTTTGTCCTGGTGATT 59.678 43.478 0.00 0.00 0.00 2.57
2654 2936 4.300803 CATGTTGTTTGTCCTGGTGATTG 58.699 43.478 0.00 0.00 0.00 2.67
2655 2937 3.625853 TGTTGTTTGTCCTGGTGATTGA 58.374 40.909 0.00 0.00 0.00 2.57
2656 2938 3.380004 TGTTGTTTGTCCTGGTGATTGAC 59.620 43.478 0.00 0.00 0.00 3.18
2657 2939 2.217750 TGTTTGTCCTGGTGATTGACG 58.782 47.619 0.00 0.00 0.00 4.35
2658 2940 2.218603 GTTTGTCCTGGTGATTGACGT 58.781 47.619 0.00 0.00 0.00 4.34
2659 2941 2.163818 TTGTCCTGGTGATTGACGTC 57.836 50.000 9.11 9.11 0.00 4.34
2660 2942 0.320374 TGTCCTGGTGATTGACGTCC 59.680 55.000 14.12 0.00 0.00 4.79
2661 2943 0.608640 GTCCTGGTGATTGACGTCCT 59.391 55.000 14.12 0.00 0.00 3.85
2662 2944 0.895530 TCCTGGTGATTGACGTCCTC 59.104 55.000 14.12 10.53 0.00 3.71
2663 2945 0.458543 CCTGGTGATTGACGTCCTCG 60.459 60.000 14.12 0.00 43.34 4.63
2664 2946 0.526211 CTGGTGATTGACGTCCTCGA 59.474 55.000 14.12 0.00 40.62 4.04
2665 2947 0.242825 TGGTGATTGACGTCCTCGAC 59.757 55.000 14.12 10.18 40.62 4.20
2666 2948 0.458025 GGTGATTGACGTCCTCGACC 60.458 60.000 14.12 14.55 40.62 4.79
2667 2949 0.797249 GTGATTGACGTCCTCGACCG 60.797 60.000 14.12 0.00 40.62 4.79
2668 2950 0.956902 TGATTGACGTCCTCGACCGA 60.957 55.000 14.12 0.00 40.62 4.69
2669 2951 0.522915 GATTGACGTCCTCGACCGAC 60.523 60.000 14.12 0.31 40.62 4.79
2670 2952 0.959372 ATTGACGTCCTCGACCGACT 60.959 55.000 14.12 0.00 40.62 4.18
2671 2953 1.572085 TTGACGTCCTCGACCGACTC 61.572 60.000 14.12 4.36 40.62 3.36
2672 2954 2.745492 ACGTCCTCGACCGACTCC 60.745 66.667 6.38 0.00 40.62 3.85
2673 2955 2.436292 CGTCCTCGACCGACTCCT 60.436 66.667 6.38 0.00 39.71 3.69
2674 2956 2.039405 CGTCCTCGACCGACTCCTT 61.039 63.158 6.38 0.00 39.71 3.36
2675 2957 1.801983 GTCCTCGACCGACTCCTTC 59.198 63.158 1.44 0.00 0.00 3.46
2676 2958 0.959372 GTCCTCGACCGACTCCTTCA 60.959 60.000 1.44 0.00 0.00 3.02
2677 2959 0.677098 TCCTCGACCGACTCCTTCAG 60.677 60.000 0.00 0.00 0.00 3.02
2678 2960 1.137825 CTCGACCGACTCCTTCAGC 59.862 63.158 0.00 0.00 0.00 4.26
2679 2961 1.587043 CTCGACCGACTCCTTCAGCA 61.587 60.000 0.00 0.00 0.00 4.41
2680 2962 0.965866 TCGACCGACTCCTTCAGCAT 60.966 55.000 0.00 0.00 0.00 3.79
2681 2963 0.803768 CGACCGACTCCTTCAGCATG 60.804 60.000 0.00 0.00 37.54 4.06
2682 2964 1.078848 ACCGACTCCTTCAGCATGC 60.079 57.895 10.51 10.51 34.76 4.06
2683 2965 1.220206 CCGACTCCTTCAGCATGCT 59.780 57.895 16.30 16.30 34.76 3.79
2684 2966 1.088340 CCGACTCCTTCAGCATGCTG 61.088 60.000 36.80 36.80 44.86 4.41
2685 2967 0.390866 CGACTCCTTCAGCATGCTGT 60.391 55.000 39.08 24.00 43.96 4.40
2686 2968 1.367659 GACTCCTTCAGCATGCTGTC 58.632 55.000 39.08 27.08 43.96 3.51
2687 2969 0.390866 ACTCCTTCAGCATGCTGTCG 60.391 55.000 39.08 30.31 43.96 4.35
2688 2970 1.703438 CTCCTTCAGCATGCTGTCGC 61.703 60.000 39.08 4.85 43.96 5.19
2689 2971 1.744368 CCTTCAGCATGCTGTCGCT 60.744 57.895 39.08 8.39 43.96 4.93
2711 2993 2.202878 GCGTCCTCATGCGGCTTA 60.203 61.111 0.00 0.00 0.00 3.09
2712 2994 2.526120 GCGTCCTCATGCGGCTTAC 61.526 63.158 0.00 0.00 0.00 2.34
2713 2995 1.141881 CGTCCTCATGCGGCTTACT 59.858 57.895 0.00 0.00 0.00 2.24
2714 2996 0.872021 CGTCCTCATGCGGCTTACTC 60.872 60.000 0.00 0.00 0.00 2.59
2715 2997 0.530870 GTCCTCATGCGGCTTACTCC 60.531 60.000 0.00 0.00 0.00 3.85
2723 3005 4.752879 GGCTTACTCCGCGCCACA 62.753 66.667 0.00 0.00 43.25 4.17
2724 3006 2.511600 GCTTACTCCGCGCCACAT 60.512 61.111 0.00 0.00 0.00 3.21
2725 3007 2.813179 GCTTACTCCGCGCCACATG 61.813 63.158 0.00 0.00 0.00 3.21
2726 3008 2.125310 TTACTCCGCGCCACATGG 60.125 61.111 0.00 0.00 38.53 3.66
2737 3019 3.319135 CCACATGGCCTCTAGCATC 57.681 57.895 3.32 0.00 46.50 3.91
2738 3020 0.763652 CCACATGGCCTCTAGCATCT 59.236 55.000 3.32 0.00 46.50 2.90
2739 3021 1.270732 CCACATGGCCTCTAGCATCTC 60.271 57.143 3.32 0.00 46.50 2.75
2740 3022 1.055040 ACATGGCCTCTAGCATCTCC 58.945 55.000 3.32 0.00 46.50 3.71
2741 3023 0.324285 CATGGCCTCTAGCATCTCCC 59.676 60.000 3.32 0.00 46.50 4.30
2742 3024 0.193069 ATGGCCTCTAGCATCTCCCT 59.807 55.000 3.32 0.00 46.50 4.20
2743 3025 0.860457 TGGCCTCTAGCATCTCCCTA 59.140 55.000 3.32 0.00 46.50 3.53
2744 3026 1.434773 TGGCCTCTAGCATCTCCCTAT 59.565 52.381 3.32 0.00 46.50 2.57
2745 3027 2.654896 TGGCCTCTAGCATCTCCCTATA 59.345 50.000 3.32 0.00 46.50 1.31
2746 3028 3.273351 TGGCCTCTAGCATCTCCCTATAT 59.727 47.826 3.32 0.00 46.50 0.86
2747 3029 3.640967 GGCCTCTAGCATCTCCCTATATG 59.359 52.174 0.00 0.00 46.50 1.78
2753 3035 2.886081 GCATCTCCCTATATGCTGACG 58.114 52.381 0.00 0.00 44.08 4.35
2754 3036 2.493675 GCATCTCCCTATATGCTGACGA 59.506 50.000 0.00 0.00 44.08 4.20
2755 3037 3.674682 GCATCTCCCTATATGCTGACGAC 60.675 52.174 0.00 0.00 44.08 4.34
2756 3038 2.152016 TCTCCCTATATGCTGACGACG 58.848 52.381 0.00 0.00 0.00 5.12
2757 3039 1.880675 CTCCCTATATGCTGACGACGT 59.119 52.381 0.00 0.00 0.00 4.34
2758 3040 1.607148 TCCCTATATGCTGACGACGTG 59.393 52.381 4.58 0.00 0.00 4.49
2759 3041 1.335964 CCCTATATGCTGACGACGTGG 60.336 57.143 4.58 0.00 0.00 4.94
2760 3042 1.337071 CCTATATGCTGACGACGTGGT 59.663 52.381 4.58 1.66 0.00 4.16
2761 3043 2.604855 CCTATATGCTGACGACGTGGTC 60.605 54.545 22.17 22.17 37.45 4.02
2774 3056 0.580104 CGTGGTCGTTTTCTGTCACC 59.420 55.000 0.00 0.00 0.00 4.02
2780 3062 3.460103 GTCGTTTTCTGTCACCCACTAA 58.540 45.455 0.00 0.00 0.00 2.24
2788 3070 8.626526 GTTTTCTGTCACCCACTAATAGAAAAA 58.373 33.333 0.00 0.00 41.47 1.94
2848 3130 0.838554 TCAATCCAGAACCGGGACCA 60.839 55.000 6.32 0.00 37.23 4.02
2869 3151 4.717313 GGGCACTGGTCCCGGTTC 62.717 72.222 0.00 0.00 33.43 3.62
2870 3152 3.948719 GGCACTGGTCCCGGTTCA 61.949 66.667 0.00 0.00 32.44 3.18
2871 3153 2.358737 GCACTGGTCCCGGTTCAG 60.359 66.667 0.00 7.54 32.44 3.02
2872 3154 3.148084 CACTGGTCCCGGTTCAGT 58.852 61.111 13.58 13.58 41.81 3.41
2873 3155 1.004918 CACTGGTCCCGGTTCAGTC 60.005 63.158 15.68 0.00 39.43 3.51
2874 3156 2.214920 ACTGGTCCCGGTTCAGTCC 61.215 63.158 13.58 1.12 37.16 3.85
2875 3157 2.122769 TGGTCCCGGTTCAGTCCA 60.123 61.111 0.00 0.00 0.00 4.02
2876 3158 2.172483 CTGGTCCCGGTTCAGTCCAG 62.172 65.000 0.00 3.96 36.87 3.86
2877 3159 1.911766 GGTCCCGGTTCAGTCCAGA 60.912 63.158 0.00 0.00 0.00 3.86
2878 3160 1.477685 GGTCCCGGTTCAGTCCAGAA 61.478 60.000 0.00 0.00 0.00 3.02
2879 3161 0.320508 GTCCCGGTTCAGTCCAGAAC 60.321 60.000 0.00 0.00 45.50 3.01
2883 3165 4.695560 GTTCAGTCCAGAACCGGG 57.304 61.111 6.32 0.00 41.52 5.73
2884 3166 2.055299 GTTCAGTCCAGAACCGGGA 58.945 57.895 6.32 0.00 41.52 5.14
2889 3171 4.243550 TCCAGAACCGGGACCAAT 57.756 55.556 6.32 0.00 0.00 3.16
2890 3172 1.682849 TCCAGAACCGGGACCAATG 59.317 57.895 6.32 0.00 0.00 2.82
2891 3173 1.378514 CCAGAACCGGGACCAATGG 60.379 63.158 6.32 0.00 0.00 3.16
2892 3174 1.378514 CAGAACCGGGACCAATGGG 60.379 63.158 6.32 0.00 41.29 4.00
2893 3175 2.044352 GAACCGGGACCAATGGGG 60.044 66.667 6.32 0.00 44.81 4.96
2894 3176 3.655350 GAACCGGGACCAATGGGGG 62.655 68.421 6.32 1.69 42.91 5.40
2901 3183 3.192630 ACCAATGGGGGCACTGGT 61.193 61.111 3.55 0.00 42.91 4.00
2902 3184 2.362889 CCAATGGGGGCACTGGTC 60.363 66.667 0.00 0.00 0.00 4.02
2903 3185 2.362889 CAATGGGGGCACTGGTCC 60.363 66.667 0.00 0.00 38.40 4.46
2975 3281 4.383861 GTGGGACGAACCGGGACC 62.384 72.222 6.32 0.00 40.11 4.46
2979 3285 1.449070 GGACGAACCGGGACCAATC 60.449 63.158 6.32 0.00 0.00 2.67
3039 3345 1.302511 CTTGAACCGGGACCACAGG 60.303 63.158 6.32 0.00 0.00 4.00
3066 3372 0.035820 TTAGTCCCGGTTCATGCCAC 60.036 55.000 0.00 0.00 0.00 5.01
3076 3382 3.124921 CATGCCACGAACCGGGAC 61.125 66.667 6.32 0.00 28.17 4.46
3099 3405 6.814954 CCAATGAGGTGCCTATATATACCT 57.185 41.667 4.82 4.82 45.77 3.08
3124 3430 2.047844 GCGAGCAGAGCACTCCAA 60.048 61.111 0.00 0.00 34.19 3.53
3144 3450 4.427312 CAATGCTATGTTTTTCTCTGGCC 58.573 43.478 0.00 0.00 0.00 5.36
3150 3456 1.228003 TTTTTCTCTGGCCGGCGAA 60.228 52.632 22.54 13.08 0.00 4.70
3220 3526 2.051804 GATGAAATGCCCGAGCCACG 62.052 60.000 0.00 0.00 38.69 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.896133 GATGGCACGCATGGGCAG 61.896 66.667 10.10 4.04 44.45 4.85
12 13 4.856801 ATCACGGGGATGGCACGC 62.857 66.667 0.00 0.00 34.06 5.34
13 14 2.588877 GATCACGGGGATGGCACG 60.589 66.667 0.00 0.00 36.00 5.34
14 15 1.819632 GTGATCACGGGGATGGCAC 60.820 63.158 10.69 0.00 36.00 5.01
15 16 1.561769 AAGTGATCACGGGGATGGCA 61.562 55.000 19.85 0.00 36.00 4.92
16 17 0.468226 TAAGTGATCACGGGGATGGC 59.532 55.000 19.85 0.00 36.00 4.40
17 18 2.634940 AGATAAGTGATCACGGGGATGG 59.365 50.000 19.85 0.00 36.00 3.51
18 19 3.555795 CCAGATAAGTGATCACGGGGATG 60.556 52.174 19.85 15.95 36.00 3.51
19 20 2.634940 CCAGATAAGTGATCACGGGGAT 59.365 50.000 19.85 11.56 39.53 3.85
20 21 2.039418 CCAGATAAGTGATCACGGGGA 58.961 52.381 19.85 7.28 36.98 4.81
21 22 1.070758 CCCAGATAAGTGATCACGGGG 59.929 57.143 20.72 19.16 42.24 5.73
22 23 2.039418 TCCCAGATAAGTGATCACGGG 58.961 52.381 21.86 21.86 45.14 5.28
23 24 4.342862 AATCCCAGATAAGTGATCACGG 57.657 45.455 19.85 13.33 36.98 4.94
24 25 6.931281 ACATAAATCCCAGATAAGTGATCACG 59.069 38.462 19.85 4.78 36.98 4.35
25 26 8.562892 CAACATAAATCCCAGATAAGTGATCAC 58.437 37.037 18.47 18.47 36.98 3.06
26 27 7.229306 GCAACATAAATCCCAGATAAGTGATCA 59.771 37.037 0.00 0.00 36.98 2.92
27 28 7.308830 GGCAACATAAATCCCAGATAAGTGATC 60.309 40.741 0.00 0.00 34.40 2.92
28 29 6.491403 GGCAACATAAATCCCAGATAAGTGAT 59.509 38.462 0.00 0.00 0.00 3.06
29 30 5.827797 GGCAACATAAATCCCAGATAAGTGA 59.172 40.000 0.00 0.00 0.00 3.41
30 31 5.277974 CGGCAACATAAATCCCAGATAAGTG 60.278 44.000 0.00 0.00 0.00 3.16
31 32 4.821805 CGGCAACATAAATCCCAGATAAGT 59.178 41.667 0.00 0.00 0.00 2.24
32 33 4.216257 CCGGCAACATAAATCCCAGATAAG 59.784 45.833 0.00 0.00 0.00 1.73
33 34 4.141287 CCGGCAACATAAATCCCAGATAA 58.859 43.478 0.00 0.00 0.00 1.75
34 35 3.750371 CCGGCAACATAAATCCCAGATA 58.250 45.455 0.00 0.00 0.00 1.98
35 36 2.586425 CCGGCAACATAAATCCCAGAT 58.414 47.619 0.00 0.00 0.00 2.90
36 37 2.021723 GCCGGCAACATAAATCCCAGA 61.022 52.381 24.80 0.00 0.00 3.86
37 38 0.385390 GCCGGCAACATAAATCCCAG 59.615 55.000 24.80 0.00 0.00 4.45
38 39 1.380403 CGCCGGCAACATAAATCCCA 61.380 55.000 28.98 0.00 0.00 4.37
39 40 1.098712 TCGCCGGCAACATAAATCCC 61.099 55.000 28.98 0.00 0.00 3.85
40 41 0.028902 GTCGCCGGCAACATAAATCC 59.971 55.000 28.98 0.00 0.00 3.01
41 42 0.028902 GGTCGCCGGCAACATAAATC 59.971 55.000 28.98 0.00 0.00 2.17
42 43 0.393808 AGGTCGCCGGCAACATAAAT 60.394 50.000 28.98 0.00 0.00 1.40
43 44 1.003112 AGGTCGCCGGCAACATAAA 60.003 52.632 28.98 0.00 0.00 1.40
44 45 1.743623 CAGGTCGCCGGCAACATAA 60.744 57.895 28.98 0.35 0.00 1.90
45 46 1.605971 TACAGGTCGCCGGCAACATA 61.606 55.000 28.98 9.31 0.00 2.29
46 47 2.852495 CTACAGGTCGCCGGCAACAT 62.852 60.000 28.98 14.72 0.00 2.71
47 48 3.583276 CTACAGGTCGCCGGCAACA 62.583 63.158 28.98 6.41 0.00 3.33
48 49 2.813908 CTACAGGTCGCCGGCAAC 60.814 66.667 28.98 20.17 0.00 4.17
49 50 4.077184 CCTACAGGTCGCCGGCAA 62.077 66.667 28.98 4.39 0.00 4.52
59 60 2.267961 GCAACCCCGACCTACAGG 59.732 66.667 0.00 0.00 42.17 4.00
60 61 2.125673 CGCAACCCCGACCTACAG 60.126 66.667 0.00 0.00 0.00 2.74
61 62 3.697747 CCGCAACCCCGACCTACA 61.698 66.667 0.00 0.00 0.00 2.74
76 77 4.514577 CTAGGTCACCGCCAGCCG 62.515 72.222 0.00 0.00 0.00 5.52
77 78 4.840005 GCTAGGTCACCGCCAGCC 62.840 72.222 6.82 0.00 31.26 4.85
78 79 4.840005 GGCTAGGTCACCGCCAGC 62.840 72.222 7.85 8.51 43.25 4.85
81 82 2.109181 GATGGCTAGGTCACCGCC 59.891 66.667 5.80 5.80 44.02 6.13
82 83 2.109181 GGATGGCTAGGTCACCGC 59.891 66.667 0.00 0.00 0.00 5.68
83 84 2.822399 GGGATGGCTAGGTCACCG 59.178 66.667 0.00 0.00 0.00 4.94
84 85 2.029307 GACGGGATGGCTAGGTCACC 62.029 65.000 0.00 0.00 0.00 4.02
85 86 1.442148 GACGGGATGGCTAGGTCAC 59.558 63.158 0.00 0.00 0.00 3.67
86 87 1.760875 GGACGGGATGGCTAGGTCA 60.761 63.158 0.00 0.00 0.00 4.02
87 88 2.857744 CGGACGGGATGGCTAGGTC 61.858 68.421 0.00 0.00 0.00 3.85
88 89 2.838225 CGGACGGGATGGCTAGGT 60.838 66.667 0.00 0.00 0.00 3.08
89 90 3.616721 CCGGACGGGATGGCTAGG 61.617 72.222 0.00 0.00 38.47 3.02
90 91 4.301027 GCCGGACGGGATGGCTAG 62.301 72.222 5.05 0.00 45.40 3.42
110 111 4.162690 CTCCCACCTGCGCTACCC 62.163 72.222 9.73 0.00 0.00 3.69
111 112 3.075005 TCTCCCACCTGCGCTACC 61.075 66.667 9.73 0.00 0.00 3.18
112 113 2.496817 CTCTCCCACCTGCGCTAC 59.503 66.667 9.73 0.00 0.00 3.58
113 114 2.759973 CCTCTCCCACCTGCGCTA 60.760 66.667 9.73 0.00 0.00 4.26
115 116 4.767255 CACCTCTCCCACCTGCGC 62.767 72.222 0.00 0.00 0.00 6.09
116 117 4.767255 GCACCTCTCCCACCTGCG 62.767 72.222 0.00 0.00 0.00 5.18
117 118 4.767255 CGCACCTCTCCCACCTGC 62.767 72.222 0.00 0.00 0.00 4.85
118 119 2.997315 TCGCACCTCTCCCACCTG 60.997 66.667 0.00 0.00 0.00 4.00
119 120 2.681778 CTCGCACCTCTCCCACCT 60.682 66.667 0.00 0.00 0.00 4.00
120 121 3.775654 CCTCGCACCTCTCCCACC 61.776 72.222 0.00 0.00 0.00 4.61
121 122 2.232298 CTTCCTCGCACCTCTCCCAC 62.232 65.000 0.00 0.00 0.00 4.61
122 123 1.984570 CTTCCTCGCACCTCTCCCA 60.985 63.158 0.00 0.00 0.00 4.37
123 124 2.726351 CCTTCCTCGCACCTCTCCC 61.726 68.421 0.00 0.00 0.00 4.30
124 125 2.726351 CCCTTCCTCGCACCTCTCC 61.726 68.421 0.00 0.00 0.00 3.71
125 126 2.726351 CCCCTTCCTCGCACCTCTC 61.726 68.421 0.00 0.00 0.00 3.20
126 127 2.685380 CCCCTTCCTCGCACCTCT 60.685 66.667 0.00 0.00 0.00 3.69
127 128 2.683933 TCCCCTTCCTCGCACCTC 60.684 66.667 0.00 0.00 0.00 3.85
128 129 2.685380 CTCCCCTTCCTCGCACCT 60.685 66.667 0.00 0.00 0.00 4.00
129 130 3.787001 CCTCCCCTTCCTCGCACC 61.787 72.222 0.00 0.00 0.00 5.01
130 131 2.683933 TCCTCCCCTTCCTCGCAC 60.684 66.667 0.00 0.00 0.00 5.34
131 132 2.683933 GTCCTCCCCTTCCTCGCA 60.684 66.667 0.00 0.00 0.00 5.10
132 133 3.839432 CGTCCTCCCCTTCCTCGC 61.839 72.222 0.00 0.00 0.00 5.03
133 134 3.148279 CCGTCCTCCCCTTCCTCG 61.148 72.222 0.00 0.00 0.00 4.63
134 135 2.764547 CCCGTCCTCCCCTTCCTC 60.765 72.222 0.00 0.00 0.00 3.71
135 136 3.281787 TCCCGTCCTCCCCTTCCT 61.282 66.667 0.00 0.00 0.00 3.36
136 137 2.764547 CTCCCGTCCTCCCCTTCC 60.765 72.222 0.00 0.00 0.00 3.46
137 138 2.764547 CCTCCCGTCCTCCCCTTC 60.765 72.222 0.00 0.00 0.00 3.46
138 139 4.416601 CCCTCCCGTCCTCCCCTT 62.417 72.222 0.00 0.00 0.00 3.95
141 142 4.173701 ATCCCCTCCCGTCCTCCC 62.174 72.222 0.00 0.00 0.00 4.30
142 143 2.844839 CATCCCCTCCCGTCCTCC 60.845 72.222 0.00 0.00 0.00 4.30
143 144 3.551407 GCATCCCCTCCCGTCCTC 61.551 72.222 0.00 0.00 0.00 3.71
182 183 3.423154 GAAACAGAGGCACCGCGG 61.423 66.667 26.86 26.86 0.00 6.46
183 184 2.357517 AGAAACAGAGGCACCGCG 60.358 61.111 0.00 0.00 0.00 6.46
184 185 1.598130 ACAGAAACAGAGGCACCGC 60.598 57.895 0.00 0.00 0.00 5.68
185 186 0.249868 TCACAGAAACAGAGGCACCG 60.250 55.000 0.00 0.00 0.00 4.94
186 187 1.517242 CTCACAGAAACAGAGGCACC 58.483 55.000 0.00 0.00 0.00 5.01
187 188 1.517242 CCTCACAGAAACAGAGGCAC 58.483 55.000 0.00 0.00 42.13 5.01
188 189 0.397941 CCCTCACAGAAACAGAGGCA 59.602 55.000 0.00 0.00 45.99 4.75
189 190 0.398318 ACCCTCACAGAAACAGAGGC 59.602 55.000 0.00 0.00 45.99 4.70
190 191 3.325135 ACTTACCCTCACAGAAACAGAGG 59.675 47.826 0.00 0.00 46.71 3.69
191 192 4.310769 CACTTACCCTCACAGAAACAGAG 58.689 47.826 0.00 0.00 0.00 3.35
192 193 3.071023 CCACTTACCCTCACAGAAACAGA 59.929 47.826 0.00 0.00 0.00 3.41
193 194 3.403038 CCACTTACCCTCACAGAAACAG 58.597 50.000 0.00 0.00 0.00 3.16
194 195 2.105821 CCCACTTACCCTCACAGAAACA 59.894 50.000 0.00 0.00 0.00 2.83
195 196 2.370849 TCCCACTTACCCTCACAGAAAC 59.629 50.000 0.00 0.00 0.00 2.78
196 197 2.696775 TCCCACTTACCCTCACAGAAA 58.303 47.619 0.00 0.00 0.00 2.52
197 198 2.370849 GTTCCCACTTACCCTCACAGAA 59.629 50.000 0.00 0.00 0.00 3.02
198 199 1.975680 GTTCCCACTTACCCTCACAGA 59.024 52.381 0.00 0.00 0.00 3.41
199 200 1.978580 AGTTCCCACTTACCCTCACAG 59.021 52.381 0.00 0.00 0.00 3.66
200 201 1.697432 CAGTTCCCACTTACCCTCACA 59.303 52.381 0.00 0.00 0.00 3.58
201 202 1.003233 CCAGTTCCCACTTACCCTCAC 59.997 57.143 0.00 0.00 0.00 3.51
202 203 1.358152 CCAGTTCCCACTTACCCTCA 58.642 55.000 0.00 0.00 0.00 3.86
203 204 0.618981 CCCAGTTCCCACTTACCCTC 59.381 60.000 0.00 0.00 0.00 4.30
204 205 1.498176 GCCCAGTTCCCACTTACCCT 61.498 60.000 0.00 0.00 0.00 4.34
205 206 1.001269 GCCCAGTTCCCACTTACCC 60.001 63.158 0.00 0.00 0.00 3.69
206 207 0.322546 CAGCCCAGTTCCCACTTACC 60.323 60.000 0.00 0.00 0.00 2.85
207 208 0.690762 TCAGCCCAGTTCCCACTTAC 59.309 55.000 0.00 0.00 0.00 2.34
208 209 1.668826 ATCAGCCCAGTTCCCACTTA 58.331 50.000 0.00 0.00 0.00 2.24
209 210 1.668826 TATCAGCCCAGTTCCCACTT 58.331 50.000 0.00 0.00 0.00 3.16
210 211 1.898863 ATATCAGCCCAGTTCCCACT 58.101 50.000 0.00 0.00 0.00 4.00
211 212 2.551071 GCTATATCAGCCCAGTTCCCAC 60.551 54.545 0.00 0.00 45.23 4.61
212 213 1.699634 GCTATATCAGCCCAGTTCCCA 59.300 52.381 0.00 0.00 45.23 4.37
213 214 2.481289 GCTATATCAGCCCAGTTCCC 57.519 55.000 0.00 0.00 45.23 3.97
270 271 3.243201 GCTAGCTTCACACTGCAGTTTTT 60.243 43.478 18.94 0.91 0.00 1.94
271 272 2.291741 GCTAGCTTCACACTGCAGTTTT 59.708 45.455 18.94 3.92 0.00 2.43
272 273 1.876156 GCTAGCTTCACACTGCAGTTT 59.124 47.619 18.94 8.53 0.00 2.66
273 274 1.071385 AGCTAGCTTCACACTGCAGTT 59.929 47.619 18.94 6.15 0.00 3.16
274 275 0.683973 AGCTAGCTTCACACTGCAGT 59.316 50.000 15.25 15.25 0.00 4.40
275 276 1.077123 CAGCTAGCTTCACACTGCAG 58.923 55.000 16.46 13.48 0.00 4.41
276 277 0.321034 CCAGCTAGCTTCACACTGCA 60.321 55.000 16.46 0.00 0.00 4.41
277 278 0.321122 ACCAGCTAGCTTCACACTGC 60.321 55.000 16.46 0.00 0.00 4.40
278 279 2.175878 AACCAGCTAGCTTCACACTG 57.824 50.000 16.46 2.32 0.00 3.66
279 280 2.028020 GGTAACCAGCTAGCTTCACACT 60.028 50.000 16.46 0.00 0.00 3.55
280 281 2.028020 AGGTAACCAGCTAGCTTCACAC 60.028 50.000 16.46 10.84 37.17 3.82
281 282 2.257207 AGGTAACCAGCTAGCTTCACA 58.743 47.619 16.46 0.00 37.17 3.58
282 283 4.674281 ATAGGTAACCAGCTAGCTTCAC 57.326 45.455 16.46 10.11 38.12 3.18
283 284 6.209589 CAGATATAGGTAACCAGCTAGCTTCA 59.790 42.308 16.46 0.00 38.12 3.02
284 285 6.209788 ACAGATATAGGTAACCAGCTAGCTTC 59.790 42.308 16.46 5.49 38.12 3.86
285 286 6.015010 CACAGATATAGGTAACCAGCTAGCTT 60.015 42.308 16.46 3.11 38.12 3.74
286 287 5.478679 CACAGATATAGGTAACCAGCTAGCT 59.521 44.000 12.68 12.68 38.12 3.32
287 288 5.336849 CCACAGATATAGGTAACCAGCTAGC 60.337 48.000 6.62 6.62 38.12 3.42
288 289 5.336849 GCCACAGATATAGGTAACCAGCTAG 60.337 48.000 0.00 0.00 38.12 3.42
289 290 4.527038 GCCACAGATATAGGTAACCAGCTA 59.473 45.833 0.00 0.00 39.02 3.32
290 291 3.325135 GCCACAGATATAGGTAACCAGCT 59.675 47.826 0.00 0.00 36.25 4.24
291 292 3.071023 TGCCACAGATATAGGTAACCAGC 59.929 47.826 0.00 0.00 37.17 4.85
292 293 4.955811 TGCCACAGATATAGGTAACCAG 57.044 45.455 0.00 0.00 37.17 4.00
293 294 4.504864 GCATGCCACAGATATAGGTAACCA 60.505 45.833 6.36 0.00 37.17 3.67
294 295 4.003648 GCATGCCACAGATATAGGTAACC 58.996 47.826 6.36 0.00 37.17 2.85
295 296 4.641396 TGCATGCCACAGATATAGGTAAC 58.359 43.478 16.68 0.00 0.00 2.50
296 297 4.972751 TGCATGCCACAGATATAGGTAA 57.027 40.909 16.68 0.00 0.00 2.85
297 298 4.835678 CATGCATGCCACAGATATAGGTA 58.164 43.478 14.93 0.00 0.00 3.08
298 299 3.682696 CATGCATGCCACAGATATAGGT 58.317 45.455 14.93 0.00 0.00 3.08
324 325 1.136565 CGGCCTAAACGCAACCATG 59.863 57.895 0.00 0.00 0.00 3.66
325 326 2.043980 CCGGCCTAAACGCAACCAT 61.044 57.895 0.00 0.00 0.00 3.55
326 327 2.670251 CCGGCCTAAACGCAACCA 60.670 61.111 0.00 0.00 0.00 3.67
327 328 2.358984 TCCGGCCTAAACGCAACC 60.359 61.111 0.00 0.00 0.00 3.77
328 329 2.865308 GTCCGGCCTAAACGCAAC 59.135 61.111 0.00 0.00 0.00 4.17
329 330 2.739287 CGTCCGGCCTAAACGCAA 60.739 61.111 0.00 0.00 0.00 4.85
330 331 4.745751 CCGTCCGGCCTAAACGCA 62.746 66.667 13.93 0.00 35.17 5.24
331 332 4.440127 TCCGTCCGGCCTAAACGC 62.440 66.667 13.93 0.00 35.17 4.84
332 333 2.507769 GTCCGTCCGGCCTAAACG 60.508 66.667 12.79 12.79 36.22 3.60
333 334 2.507769 CGTCCGTCCGGCCTAAAC 60.508 66.667 0.00 0.00 34.68 2.01
334 335 2.990967 ACGTCCGTCCGGCCTAAA 60.991 61.111 0.00 0.00 34.68 1.85
335 336 3.751246 CACGTCCGTCCGGCCTAA 61.751 66.667 0.00 0.00 34.68 2.69
340 341 4.657824 AAGCACACGTCCGTCCGG 62.658 66.667 0.00 0.00 0.00 5.14
341 342 3.403057 CAAGCACACGTCCGTCCG 61.403 66.667 0.00 0.00 0.00 4.79
342 343 3.712881 GCAAGCACACGTCCGTCC 61.713 66.667 0.00 0.00 0.00 4.79
343 344 4.059459 CGCAAGCACACGTCCGTC 62.059 66.667 0.00 0.00 0.00 4.79
344 345 4.884257 ACGCAAGCACACGTCCGT 62.884 61.111 0.00 0.00 38.28 4.69
345 346 2.640736 AAAACGCAAGCACACGTCCG 62.641 55.000 0.00 0.00 42.68 4.79
346 347 1.063488 AAAACGCAAGCACACGTCC 59.937 52.632 0.00 0.00 42.68 4.79
347 348 1.199852 CCAAAACGCAAGCACACGTC 61.200 55.000 0.00 0.00 42.68 4.34
348 349 1.226547 CCAAAACGCAAGCACACGT 60.227 52.632 0.00 0.00 46.07 4.49
349 350 0.800300 AACCAAAACGCAAGCACACG 60.800 50.000 0.00 0.00 45.62 4.49
350 351 0.920664 GAACCAAAACGCAAGCACAC 59.079 50.000 0.00 0.00 45.62 3.82
351 352 0.814457 AGAACCAAAACGCAAGCACA 59.186 45.000 0.00 0.00 45.62 4.57
352 353 1.921243 AAGAACCAAAACGCAAGCAC 58.079 45.000 0.00 0.00 45.62 4.40
353 354 2.535331 GAAAGAACCAAAACGCAAGCA 58.465 42.857 0.00 0.00 45.62 3.91
354 355 1.516864 CGAAAGAACCAAAACGCAAGC 59.483 47.619 0.00 0.00 45.62 4.01
356 357 2.923605 ACGAAAGAACCAAAACGCAA 57.076 40.000 0.00 0.00 0.00 4.85
357 358 2.917971 CAAACGAAAGAACCAAAACGCA 59.082 40.909 0.00 0.00 0.00 5.24
358 359 3.172824 TCAAACGAAAGAACCAAAACGC 58.827 40.909 0.00 0.00 0.00 4.84
359 360 5.031578 TCATCAAACGAAAGAACCAAAACG 58.968 37.500 0.00 0.00 0.00 3.60
360 361 7.463469 AATCATCAAACGAAAGAACCAAAAC 57.537 32.000 0.00 0.00 0.00 2.43
361 362 9.757227 ATAAATCATCAAACGAAAGAACCAAAA 57.243 25.926 0.00 0.00 0.00 2.44
474 478 9.730705 ATCATCGTCAACCAGATATAAATGATT 57.269 29.630 0.00 0.00 28.50 2.57
535 540 2.295253 ATAAGAGAGAACCGCGTTGG 57.705 50.000 4.92 0.00 46.41 3.77
567 578 4.333649 ACGTAAGATGCATGAATTGACTGG 59.666 41.667 2.46 0.00 43.62 4.00
649 660 3.175438 ACTTGCCTCCTAAATTGGCTT 57.825 42.857 5.45 0.00 46.23 4.35
830 841 2.483745 CATGCTGCGCTGGTCTTG 59.516 61.111 16.47 5.12 0.00 3.02
860 877 3.250762 ACACTTGTTCGCAGTACGTACTA 59.749 43.478 26.95 10.21 42.03 1.82
959 1237 1.262683 GCTAGAAGACCGATGCAATGC 59.737 52.381 0.00 0.00 0.00 3.56
960 1238 2.799412 GAGCTAGAAGACCGATGCAATG 59.201 50.000 0.00 0.00 0.00 2.82
962 1240 1.137086 GGAGCTAGAAGACCGATGCAA 59.863 52.381 0.00 0.00 0.00 4.08
970 1248 2.542824 GCGATGTCTGGAGCTAGAAGAC 60.543 54.545 13.45 13.45 40.61 3.01
973 1251 0.382158 CGCGATGTCTGGAGCTAGAA 59.618 55.000 0.00 0.00 0.00 2.10
982 1260 0.166597 ATTTGCACACGCGATGTCTG 59.833 50.000 15.93 1.61 40.64 3.51
991 1269 2.499520 CGACGCCATTTGCACACG 60.500 61.111 0.00 0.00 41.33 4.49
1704 1982 0.179004 TGTTGGCGTTCTGGAATGGT 60.179 50.000 4.95 0.00 0.00 3.55
1714 1992 3.649986 GCTCGTGCTGTTGGCGTT 61.650 61.111 1.41 0.00 45.43 4.84
1869 2147 1.264749 CGTTGGGAGGGATGGACAGA 61.265 60.000 0.00 0.00 0.00 3.41
1992 2270 0.737715 GCAGCGTCACTAGGGACTTG 60.738 60.000 22.47 19.65 41.75 3.16
1993 2271 1.592223 GCAGCGTCACTAGGGACTT 59.408 57.895 22.47 8.28 41.75 3.01
2400 2678 3.380479 TTACACTCTGAACTCAACCGG 57.620 47.619 0.00 0.00 0.00 5.28
2432 2714 2.689983 AGCCTTCCCGCAAATAAATCTG 59.310 45.455 0.00 0.00 0.00 2.90
2475 2757 1.404986 GGCGGCGCAATATGTCCTATA 60.405 52.381 34.36 0.00 0.00 1.31
2479 2761 2.591715 AGGCGGCGCAATATGTCC 60.592 61.111 34.36 13.46 0.00 4.02
2480 2762 2.939022 GAGGCGGCGCAATATGTC 59.061 61.111 34.36 14.27 0.00 3.06
2481 2763 2.967076 CGAGGCGGCGCAATATGT 60.967 61.111 34.36 10.04 0.00 2.29
2482 2764 3.716006 CCGAGGCGGCGCAATATG 61.716 66.667 34.36 17.12 41.17 1.78
2483 2765 4.988598 CCCGAGGCGGCGCAATAT 62.989 66.667 34.36 16.11 46.86 1.28
2493 2775 4.754667 GTGGTCCGAACCCGAGGC 62.755 72.222 0.00 0.00 45.83 4.70
2494 2776 4.430765 CGTGGTCCGAACCCGAGG 62.431 72.222 0.00 0.00 45.83 4.63
2499 2781 3.934391 CTCCAGCGTGGTCCGAACC 62.934 68.421 0.00 0.00 46.66 3.62
2500 2782 2.432628 CTCCAGCGTGGTCCGAAC 60.433 66.667 4.33 0.00 39.03 3.95
2501 2783 3.691342 CCTCCAGCGTGGTCCGAA 61.691 66.667 4.33 0.00 39.03 4.30
2504 2786 3.775654 CTCCCTCCAGCGTGGTCC 61.776 72.222 4.33 0.00 39.03 4.46
2505 2787 2.997897 ACTCCCTCCAGCGTGGTC 60.998 66.667 4.33 0.00 39.03 4.02
2506 2788 3.314331 CACTCCCTCCAGCGTGGT 61.314 66.667 4.33 0.00 39.03 4.16
2507 2789 4.087892 CCACTCCCTCCAGCGTGG 62.088 72.222 0.00 0.00 40.71 4.94
2508 2790 4.087892 CCCACTCCCTCCAGCGTG 62.088 72.222 0.00 0.00 0.00 5.34
2509 2791 4.640690 ACCCACTCCCTCCAGCGT 62.641 66.667 0.00 0.00 0.00 5.07
2510 2792 3.775654 GACCCACTCCCTCCAGCG 61.776 72.222 0.00 0.00 0.00 5.18
2511 2793 3.403558 GGACCCACTCCCTCCAGC 61.404 72.222 0.00 0.00 31.83 4.85
2523 2805 1.996070 GCCAAGTAGGATGGGGACCC 61.996 65.000 0.03 0.03 46.60 4.46
2525 2807 0.107165 GTGCCAAGTAGGATGGGGAC 60.107 60.000 0.00 0.00 41.22 4.46
2526 2808 1.622607 CGTGCCAAGTAGGATGGGGA 61.623 60.000 0.00 0.00 41.22 4.81
2527 2809 1.153168 CGTGCCAAGTAGGATGGGG 60.153 63.158 0.00 0.00 41.22 4.96
2528 2810 1.153168 CCGTGCCAAGTAGGATGGG 60.153 63.158 0.00 0.00 41.22 4.00
2529 2811 1.819632 GCCGTGCCAAGTAGGATGG 60.820 63.158 0.00 0.00 41.22 3.51
2530 2812 0.676466 TTGCCGTGCCAAGTAGGATG 60.676 55.000 0.00 0.00 41.22 3.51
2531 2813 0.392998 CTTGCCGTGCCAAGTAGGAT 60.393 55.000 0.00 0.00 41.22 3.24
2532 2814 1.003839 CTTGCCGTGCCAAGTAGGA 60.004 57.895 0.00 0.00 41.22 2.94
2533 2815 3.578456 CTTGCCGTGCCAAGTAGG 58.422 61.111 0.00 0.00 37.89 3.18
2537 2819 2.860293 CGTACTTGCCGTGCCAAG 59.140 61.111 6.27 6.27 45.90 3.61
2538 2820 3.350612 GCGTACTTGCCGTGCCAA 61.351 61.111 0.00 0.00 0.00 4.52
2546 2828 3.788766 CAGCACCCGCGTACTTGC 61.789 66.667 4.92 7.88 45.49 4.01
2547 2829 3.788766 GCAGCACCCGCGTACTTG 61.789 66.667 4.92 0.00 45.49 3.16
2548 2830 3.934391 GAGCAGCACCCGCGTACTT 62.934 63.158 4.92 0.00 45.49 2.24
2549 2831 4.436998 GAGCAGCACCCGCGTACT 62.437 66.667 4.92 0.00 45.49 2.73
2550 2832 4.735132 TGAGCAGCACCCGCGTAC 62.735 66.667 4.92 0.00 45.49 3.67
2551 2833 3.997397 TTGAGCAGCACCCGCGTA 61.997 61.111 4.92 0.00 45.49 4.42
2557 2839 3.730761 CAGCCGTTGAGCAGCACC 61.731 66.667 0.00 0.00 34.23 5.01
2558 2840 2.959357 GACAGCCGTTGAGCAGCAC 61.959 63.158 0.00 0.00 34.23 4.40
2559 2841 2.666190 GACAGCCGTTGAGCAGCA 60.666 61.111 0.00 0.00 34.23 4.41
2560 2842 3.426568 GGACAGCCGTTGAGCAGC 61.427 66.667 0.00 0.00 34.23 5.25
2561 2843 2.031516 CAGGACAGCCGTTGAGCAG 61.032 63.158 0.00 0.00 39.96 4.24
2562 2844 2.031012 CAGGACAGCCGTTGAGCA 59.969 61.111 0.00 0.00 39.96 4.26
2563 2845 2.743928 CCAGGACAGCCGTTGAGC 60.744 66.667 0.00 0.00 39.96 4.26
2564 2846 1.374758 GTCCAGGACAGCCGTTGAG 60.375 63.158 15.43 0.00 39.96 3.02
2565 2847 2.741092 GTCCAGGACAGCCGTTGA 59.259 61.111 15.43 0.00 39.96 3.18
2566 2848 2.358737 GGTCCAGGACAGCCGTTG 60.359 66.667 21.75 0.00 39.96 4.10
2567 2849 4.003788 CGGTCCAGGACAGCCGTT 62.004 66.667 21.75 0.00 39.41 4.44
2572 2854 3.302347 GACAGGCGGTCCAGGACAG 62.302 68.421 21.75 18.38 40.83 3.51
2573 2855 3.311110 GACAGGCGGTCCAGGACA 61.311 66.667 21.75 0.00 40.83 4.02
2574 2856 3.311110 TGACAGGCGGTCCAGGAC 61.311 66.667 11.70 11.70 46.38 3.85
2575 2857 3.311110 GTGACAGGCGGTCCAGGA 61.311 66.667 15.15 0.00 46.38 3.86
2576 2858 3.302347 GAGTGACAGGCGGTCCAGG 62.302 68.421 15.15 0.00 46.38 4.45
2577 2859 2.262915 GAGTGACAGGCGGTCCAG 59.737 66.667 15.15 0.00 46.38 3.86
2578 2860 2.523168 TGAGTGACAGGCGGTCCA 60.523 61.111 15.15 3.36 46.38 4.02
2579 2861 2.048127 GTGAGTGACAGGCGGTCC 60.048 66.667 15.15 6.72 46.38 4.46
2581 2863 2.737180 CAGTGAGTGACAGGCGGT 59.263 61.111 0.00 0.00 0.00 5.68
2582 2864 2.740055 GCAGTGAGTGACAGGCGG 60.740 66.667 0.00 0.00 0.00 6.13
2583 2865 1.563435 CTTGCAGTGAGTGACAGGCG 61.563 60.000 0.00 0.00 34.17 5.52
2584 2866 1.233285 CCTTGCAGTGAGTGACAGGC 61.233 60.000 0.00 0.00 0.00 4.85
2585 2867 0.604780 CCCTTGCAGTGAGTGACAGG 60.605 60.000 0.00 0.00 0.00 4.00
2586 2868 0.604780 CCCCTTGCAGTGAGTGACAG 60.605 60.000 0.00 0.00 0.00 3.51
2587 2869 1.451504 CCCCTTGCAGTGAGTGACA 59.548 57.895 0.00 0.00 0.00 3.58
2588 2870 1.968540 GCCCCTTGCAGTGAGTGAC 60.969 63.158 0.00 0.00 40.77 3.67
2589 2871 2.116983 GAGCCCCTTGCAGTGAGTGA 62.117 60.000 0.00 0.00 44.83 3.41
2590 2872 1.673665 GAGCCCCTTGCAGTGAGTG 60.674 63.158 0.00 0.00 44.83 3.51
2591 2873 1.845205 AGAGCCCCTTGCAGTGAGT 60.845 57.895 0.00 0.00 44.83 3.41
2592 2874 1.376942 CAGAGCCCCTTGCAGTGAG 60.377 63.158 0.00 0.00 44.83 3.51
2593 2875 2.752358 CAGAGCCCCTTGCAGTGA 59.248 61.111 0.00 0.00 44.83 3.41
2594 2876 2.360852 CCAGAGCCCCTTGCAGTG 60.361 66.667 0.00 0.00 44.83 3.66
2595 2877 4.357279 GCCAGAGCCCCTTGCAGT 62.357 66.667 0.00 0.00 44.83 4.40
2596 2878 4.355720 TGCCAGAGCCCCTTGCAG 62.356 66.667 0.00 0.00 44.83 4.41
2597 2879 4.355720 CTGCCAGAGCCCCTTGCA 62.356 66.667 0.00 3.12 44.83 4.08
2599 2881 4.437587 CCCTGCCAGAGCCCCTTG 62.438 72.222 0.00 0.00 38.69 3.61
2604 2886 4.925861 GATCGCCCTGCCAGAGCC 62.926 72.222 0.00 0.00 38.69 4.70
2605 2887 4.925861 GGATCGCCCTGCCAGAGC 62.926 72.222 0.00 0.00 40.48 4.09
2606 2888 4.598894 CGGATCGCCCTGCCAGAG 62.599 72.222 0.00 0.00 0.00 3.35
2610 2892 4.796495 AAACCGGATCGCCCTGCC 62.796 66.667 9.46 0.00 0.00 4.85
2611 2893 3.202706 GAAACCGGATCGCCCTGC 61.203 66.667 9.46 0.00 0.00 4.85
2612 2894 1.521681 GAGAAACCGGATCGCCCTG 60.522 63.158 9.46 0.00 0.00 4.45
2613 2895 2.732619 GGAGAAACCGGATCGCCCT 61.733 63.158 9.46 0.00 31.32 5.19
2614 2896 2.203029 GGAGAAACCGGATCGCCC 60.203 66.667 9.46 9.33 31.32 6.13
2615 2897 2.203029 GGGAGAAACCGGATCGCC 60.203 66.667 20.49 20.49 40.11 5.54
2616 2898 1.146263 ATGGGAGAAACCGGATCGC 59.854 57.895 9.46 7.90 40.11 4.58
2617 2899 0.178068 ACATGGGAGAAACCGGATCG 59.822 55.000 9.46 0.00 40.11 3.69
2618 2900 2.017049 CAACATGGGAGAAACCGGATC 58.983 52.381 9.46 6.12 40.11 3.36
2619 2901 1.354368 ACAACATGGGAGAAACCGGAT 59.646 47.619 9.46 0.00 40.11 4.18
2620 2902 0.768622 ACAACATGGGAGAAACCGGA 59.231 50.000 9.46 0.00 40.11 5.14
2621 2903 1.616159 AACAACATGGGAGAAACCGG 58.384 50.000 0.00 0.00 40.11 5.28
2622 2904 2.360801 ACAAACAACATGGGAGAAACCG 59.639 45.455 0.00 0.00 40.11 4.44
2623 2905 3.243737 GGACAAACAACATGGGAGAAACC 60.244 47.826 0.00 0.00 38.08 3.27
2624 2906 3.636764 AGGACAAACAACATGGGAGAAAC 59.363 43.478 0.00 0.00 0.00 2.78
2625 2907 3.636300 CAGGACAAACAACATGGGAGAAA 59.364 43.478 0.00 0.00 0.00 2.52
2626 2908 3.221771 CAGGACAAACAACATGGGAGAA 58.778 45.455 0.00 0.00 0.00 2.87
2627 2909 2.488891 CCAGGACAAACAACATGGGAGA 60.489 50.000 0.00 0.00 34.84 3.71
2628 2910 1.888512 CCAGGACAAACAACATGGGAG 59.111 52.381 0.00 0.00 34.84 4.30
2629 2911 1.216678 ACCAGGACAAACAACATGGGA 59.783 47.619 0.00 0.00 41.42 4.37
2630 2912 1.340889 CACCAGGACAAACAACATGGG 59.659 52.381 0.00 0.00 41.42 4.00
2631 2913 2.305928 TCACCAGGACAAACAACATGG 58.694 47.619 0.00 0.00 42.56 3.66
2632 2914 4.037803 TCAATCACCAGGACAAACAACATG 59.962 41.667 0.00 0.00 0.00 3.21
2633 2915 4.037923 GTCAATCACCAGGACAAACAACAT 59.962 41.667 0.00 0.00 0.00 2.71
2634 2916 3.380004 GTCAATCACCAGGACAAACAACA 59.620 43.478 0.00 0.00 0.00 3.33
2635 2917 3.548014 CGTCAATCACCAGGACAAACAAC 60.548 47.826 0.00 0.00 0.00 3.32
2636 2918 2.616376 CGTCAATCACCAGGACAAACAA 59.384 45.455 0.00 0.00 0.00 2.83
2637 2919 2.217750 CGTCAATCACCAGGACAAACA 58.782 47.619 0.00 0.00 0.00 2.83
2638 2920 2.218603 ACGTCAATCACCAGGACAAAC 58.781 47.619 0.00 0.00 0.00 2.93
2639 2921 2.489971 GACGTCAATCACCAGGACAAA 58.510 47.619 11.55 0.00 0.00 2.83
2640 2922 1.270625 GGACGTCAATCACCAGGACAA 60.271 52.381 18.91 0.00 0.00 3.18
2641 2923 0.320374 GGACGTCAATCACCAGGACA 59.680 55.000 18.91 0.00 0.00 4.02
2642 2924 0.608640 AGGACGTCAATCACCAGGAC 59.391 55.000 18.91 0.00 0.00 3.85
2643 2925 0.895530 GAGGACGTCAATCACCAGGA 59.104 55.000 18.91 0.00 0.00 3.86
2644 2926 0.458543 CGAGGACGTCAATCACCAGG 60.459 60.000 18.91 0.00 34.56 4.45
2645 2927 0.526211 TCGAGGACGTCAATCACCAG 59.474 55.000 18.91 2.53 40.69 4.00
2646 2928 0.242825 GTCGAGGACGTCAATCACCA 59.757 55.000 18.91 0.00 40.69 4.17
2647 2929 0.458025 GGTCGAGGACGTCAATCACC 60.458 60.000 18.91 17.90 40.69 4.02
2648 2930 0.797249 CGGTCGAGGACGTCAATCAC 60.797 60.000 18.91 13.75 40.69 3.06
2649 2931 0.956902 TCGGTCGAGGACGTCAATCA 60.957 55.000 18.91 3.41 40.69 2.57
2650 2932 0.522915 GTCGGTCGAGGACGTCAATC 60.523 60.000 18.91 13.48 40.69 2.67
2651 2933 0.959372 AGTCGGTCGAGGACGTCAAT 60.959 55.000 18.91 4.87 39.38 2.57
2652 2934 1.572085 GAGTCGGTCGAGGACGTCAA 61.572 60.000 18.91 0.00 39.38 3.18
2653 2935 2.031516 GAGTCGGTCGAGGACGTCA 61.032 63.158 18.91 0.00 39.38 4.35
2654 2936 2.748843 GGAGTCGGTCGAGGACGTC 61.749 68.421 7.13 7.13 39.38 4.34
2655 2937 2.744768 AAGGAGTCGGTCGAGGACGT 62.745 60.000 10.04 0.00 39.38 4.34
2656 2938 1.979831 GAAGGAGTCGGTCGAGGACG 61.980 65.000 10.04 4.63 39.38 4.79
2657 2939 0.959372 TGAAGGAGTCGGTCGAGGAC 60.959 60.000 8.18 8.18 34.62 3.85
2658 2940 0.677098 CTGAAGGAGTCGGTCGAGGA 60.677 60.000 0.00 0.00 0.00 3.71
2659 2941 1.803943 CTGAAGGAGTCGGTCGAGG 59.196 63.158 0.00 0.00 0.00 4.63
2660 2942 1.137825 GCTGAAGGAGTCGGTCGAG 59.862 63.158 0.00 0.00 34.76 4.04
2661 2943 0.965866 ATGCTGAAGGAGTCGGTCGA 60.966 55.000 0.00 0.00 34.76 4.20
2662 2944 0.803768 CATGCTGAAGGAGTCGGTCG 60.804 60.000 0.00 0.00 34.76 4.79
2663 2945 1.086634 GCATGCTGAAGGAGTCGGTC 61.087 60.000 11.37 0.00 34.76 4.79
2664 2946 1.078848 GCATGCTGAAGGAGTCGGT 60.079 57.895 11.37 0.00 34.76 4.69
2665 2947 1.088340 CAGCATGCTGAAGGAGTCGG 61.088 60.000 38.90 10.87 46.30 4.79
2666 2948 0.390866 ACAGCATGCTGAAGGAGTCG 60.391 55.000 45.50 22.18 46.30 4.18
2667 2949 1.367659 GACAGCATGCTGAAGGAGTC 58.632 55.000 45.50 30.10 46.30 3.36
2668 2950 0.390866 CGACAGCATGCTGAAGGAGT 60.391 55.000 45.50 27.29 46.30 3.85
2669 2951 1.703438 GCGACAGCATGCTGAAGGAG 61.703 60.000 45.50 30.73 46.30 3.69
2670 2952 1.742880 GCGACAGCATGCTGAAGGA 60.743 57.895 45.50 0.00 46.30 3.36
2671 2953 1.744368 AGCGACAGCATGCTGAAGG 60.744 57.895 45.50 33.15 46.30 3.46
2672 2954 3.886340 AGCGACAGCATGCTGAAG 58.114 55.556 45.50 36.29 46.30 3.02
2693 2975 3.733344 TAAGCCGCATGAGGACGCC 62.733 63.158 20.86 0.78 0.00 5.68
2694 2976 2.202878 TAAGCCGCATGAGGACGC 60.203 61.111 20.86 3.71 0.00 5.19
2695 2977 0.872021 GAGTAAGCCGCATGAGGACG 60.872 60.000 20.86 1.06 0.00 4.79
2696 2978 0.530870 GGAGTAAGCCGCATGAGGAC 60.531 60.000 20.86 8.69 0.00 3.85
2697 2979 1.823295 GGAGTAAGCCGCATGAGGA 59.177 57.895 20.86 0.00 0.00 3.71
2698 2980 1.592669 CGGAGTAAGCCGCATGAGG 60.593 63.158 11.71 11.71 45.38 3.86
2699 2981 4.018609 CGGAGTAAGCCGCATGAG 57.981 61.111 0.00 0.00 45.38 2.90
2707 2989 2.511600 ATGTGGCGCGGAGTAAGC 60.512 61.111 8.83 0.00 0.00 3.09
2708 2990 2.173669 CCATGTGGCGCGGAGTAAG 61.174 63.158 8.83 0.00 0.00 2.34
2709 2991 2.125310 CCATGTGGCGCGGAGTAA 60.125 61.111 8.83 0.00 0.00 2.24
2719 3001 0.763652 AGATGCTAGAGGCCATGTGG 59.236 55.000 5.01 0.00 40.92 4.17
2720 3002 1.270732 GGAGATGCTAGAGGCCATGTG 60.271 57.143 5.01 0.00 40.92 3.21
2721 3003 1.055040 GGAGATGCTAGAGGCCATGT 58.945 55.000 5.01 0.00 40.92 3.21
2722 3004 0.324285 GGGAGATGCTAGAGGCCATG 59.676 60.000 5.01 0.00 40.92 3.66
2723 3005 0.193069 AGGGAGATGCTAGAGGCCAT 59.807 55.000 5.01 0.00 40.92 4.40
2724 3006 0.860457 TAGGGAGATGCTAGAGGCCA 59.140 55.000 5.01 0.00 40.92 5.36
2725 3007 2.246091 ATAGGGAGATGCTAGAGGCC 57.754 55.000 0.00 0.00 40.92 5.19
2726 3008 3.069443 GCATATAGGGAGATGCTAGAGGC 59.931 52.174 0.00 0.00 45.12 4.70
2727 3009 4.935352 GCATATAGGGAGATGCTAGAGG 57.065 50.000 0.00 0.00 45.12 3.69
2734 3016 3.426829 CGTCGTCAGCATATAGGGAGATG 60.427 52.174 0.00 0.00 0.00 2.90
2735 3017 2.750166 CGTCGTCAGCATATAGGGAGAT 59.250 50.000 0.00 0.00 0.00 2.75
2736 3018 2.152016 CGTCGTCAGCATATAGGGAGA 58.848 52.381 0.00 0.00 0.00 3.71
2737 3019 1.880675 ACGTCGTCAGCATATAGGGAG 59.119 52.381 0.00 0.00 0.00 4.30
2738 3020 1.607148 CACGTCGTCAGCATATAGGGA 59.393 52.381 0.00 0.00 0.00 4.20
2739 3021 1.335964 CCACGTCGTCAGCATATAGGG 60.336 57.143 0.00 0.00 0.00 3.53
2740 3022 1.337071 ACCACGTCGTCAGCATATAGG 59.663 52.381 0.00 0.00 0.00 2.57
2741 3023 2.651701 GACCACGTCGTCAGCATATAG 58.348 52.381 8.54 0.00 32.74 1.31
2742 3024 2.768833 GACCACGTCGTCAGCATATA 57.231 50.000 8.54 0.00 32.74 0.86
2743 3025 3.642901 GACCACGTCGTCAGCATAT 57.357 52.632 8.54 0.00 32.74 1.78
2755 3037 0.580104 GGTGACAGAAAACGACCACG 59.420 55.000 0.00 0.00 45.75 4.94
2756 3038 0.942252 GGGTGACAGAAAACGACCAC 59.058 55.000 0.00 0.00 0.00 4.16
2757 3039 0.542333 TGGGTGACAGAAAACGACCA 59.458 50.000 0.00 0.00 0.00 4.02
2758 3040 0.942252 GTGGGTGACAGAAAACGACC 59.058 55.000 0.00 0.00 0.00 4.79
2759 3041 1.949465 AGTGGGTGACAGAAAACGAC 58.051 50.000 0.00 0.00 0.00 4.34
2760 3042 3.823281 TTAGTGGGTGACAGAAAACGA 57.177 42.857 0.00 0.00 0.00 3.85
2761 3043 5.475719 TCTATTAGTGGGTGACAGAAAACG 58.524 41.667 0.00 0.00 0.00 3.60
2762 3044 7.739498 TTTCTATTAGTGGGTGACAGAAAAC 57.261 36.000 0.00 0.00 30.04 2.43
2763 3045 8.754991 TTTTTCTATTAGTGGGTGACAGAAAA 57.245 30.769 0.00 0.00 38.22 2.29
2788 3070 1.533994 GGCCTGAACCAAAGCCCTT 60.534 57.895 0.00 0.00 39.60 3.95
2848 3130 4.047125 CGGGACCAGTGCCCCATT 62.047 66.667 16.22 0.00 42.92 3.16
2872 3154 1.682849 CATTGGTCCCGGTTCTGGA 59.317 57.895 0.00 0.00 0.00 3.86
2873 3155 1.378514 CCATTGGTCCCGGTTCTGG 60.379 63.158 0.00 0.00 0.00 3.86
2874 3156 1.378514 CCCATTGGTCCCGGTTCTG 60.379 63.158 0.00 0.00 0.00 3.02
2875 3157 2.612493 CCCCATTGGTCCCGGTTCT 61.612 63.158 0.00 0.00 0.00 3.01
2876 3158 2.044352 CCCCATTGGTCCCGGTTC 60.044 66.667 0.00 0.00 0.00 3.62
2877 3159 3.668142 CCCCCATTGGTCCCGGTT 61.668 66.667 0.00 0.00 0.00 4.44
2881 3163 3.672503 AGTGCCCCCATTGGTCCC 61.673 66.667 1.20 0.00 0.00 4.46
2882 3164 2.362889 CAGTGCCCCCATTGGTCC 60.363 66.667 1.20 0.00 0.00 4.46
2883 3165 2.362889 CCAGTGCCCCCATTGGTC 60.363 66.667 1.20 0.00 42.23 4.02
2886 3168 2.362889 GGACCAGTGCCCCCATTG 60.363 66.667 0.00 0.00 0.00 2.82
2887 3169 3.672503 GGGACCAGTGCCCCCATT 61.673 66.667 11.84 0.00 39.81 3.16
2892 3174 4.717313 GAACCGGGACCAGTGCCC 62.717 72.222 6.32 0.00 42.41 5.36
2894 3176 4.309950 ACGAACCGGGACCAGTGC 62.310 66.667 6.32 0.00 0.00 4.40
2895 3177 2.357034 CACGAACCGGGACCAGTG 60.357 66.667 6.32 4.87 28.17 3.66
2896 3178 2.522436 TCACGAACCGGGACCAGT 60.522 61.111 6.32 0.00 32.99 4.00
2897 3179 2.261671 CTCACGAACCGGGACCAG 59.738 66.667 6.32 0.00 32.99 4.00
2898 3180 3.307906 CCTCACGAACCGGGACCA 61.308 66.667 6.32 0.00 32.99 4.02
2899 3181 4.754667 GCCTCACGAACCGGGACC 62.755 72.222 6.32 0.00 32.99 4.46
2900 3182 4.754667 GGCCTCACGAACCGGGAC 62.755 72.222 6.32 0.00 32.99 4.46
2902 3184 4.760047 CTGGCCTCACGAACCGGG 62.760 72.222 6.32 0.00 0.00 5.73
2903 3185 4.760047 CCTGGCCTCACGAACCGG 62.760 72.222 3.32 0.00 0.00 5.28
2904 3186 4.760047 CCCTGGCCTCACGAACCG 62.760 72.222 3.32 0.00 0.00 4.44
2905 3187 4.410400 CCCCTGGCCTCACGAACC 62.410 72.222 3.32 0.00 0.00 3.62
3039 3345 2.124695 CCGGGACTAAAGGGCAGC 60.125 66.667 0.00 0.00 0.00 5.25
3066 3372 1.449601 CCTCATTGGTCCCGGTTCG 60.450 63.158 0.00 0.00 0.00 3.95
3076 3382 6.814954 AGGTATATATAGGCACCTCATTGG 57.185 41.667 7.38 0.00 36.69 3.16
3088 3394 2.223611 CGCGGGCGAGAGGTATATATAG 59.776 54.545 7.38 0.00 42.83 1.31
3121 3427 4.427312 GCCAGAGAAAAACATAGCATTGG 58.573 43.478 0.00 0.00 0.00 3.16
3124 3430 2.684881 CGGCCAGAGAAAAACATAGCAT 59.315 45.455 2.24 0.00 0.00 3.79
3129 3435 1.586154 CGCCGGCCAGAGAAAAACAT 61.586 55.000 23.46 0.00 0.00 2.71
3144 3450 4.410400 AAAGCCCTCCCTTCGCCG 62.410 66.667 0.00 0.00 0.00 6.46
3150 3456 2.846532 CACCACAAAGCCCTCCCT 59.153 61.111 0.00 0.00 0.00 4.20
3220 3526 7.168096 CTTCGAGAGGAGAAAGCTTAACTAGC 61.168 46.154 0.00 0.00 44.93 3.42



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.