Multiple sequence alignment - TraesCS2D01G223000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G223000 chr2D 100.000 5173 0 0 1 5173 190036508 190031336 0.000000e+00 9553.0
1 TraesCS2D01G223000 chr2D 88.184 1041 86 12 858 1883 638341971 638340953 0.000000e+00 1206.0
2 TraesCS2D01G223000 chr2D 86.004 1086 100 28 2047 3124 638340601 638339560 0.000000e+00 1116.0
3 TraesCS2D01G223000 chr2D 90.638 470 32 8 3814 4271 638338844 638338375 9.520000e-172 614.0
4 TraesCS2D01G223000 chr2D 86.711 301 22 9 3225 3516 638339437 638339146 8.360000e-83 318.0
5 TraesCS2D01G223000 chr2D 78.509 228 46 2 2885 3112 180993854 180994078 4.170000e-31 147.0
6 TraesCS2D01G223000 chr2D 97.436 39 0 1 4305 4343 638338364 638338327 1.200000e-06 65.8
7 TraesCS2D01G223000 chr2D 85.000 60 9 0 1625 1684 190116097 190116038 1.560000e-05 62.1
8 TraesCS2D01G223000 chr2A 95.431 1554 52 7 346 1889 203906773 203905229 0.000000e+00 2459.0
9 TraesCS2D01G223000 chr2A 91.417 1701 81 29 1955 3622 203905225 203903557 0.000000e+00 2272.0
10 TraesCS2D01G223000 chr2A 88.332 1037 89 12 863 1883 763867632 763868652 0.000000e+00 1216.0
11 TraesCS2D01G223000 chr2A 85.820 811 86 20 1955 2761 763868655 763869440 0.000000e+00 833.0
12 TraesCS2D01G223000 chr2A 96.368 413 11 3 3797 4208 203903555 203903146 0.000000e+00 676.0
13 TraesCS2D01G223000 chr2A 89.019 428 36 7 3797 4221 763870570 763870989 2.130000e-143 520.0
14 TraesCS2D01G223000 chr2A 89.474 418 28 7 4248 4659 203903141 203902734 9.930000e-142 514.0
15 TraesCS2D01G223000 chr2A 94.393 321 15 2 4673 4991 203902453 203902134 1.670000e-134 490.0
16 TraesCS2D01G223000 chr2A 93.023 258 18 0 2862 3119 763869933 763870190 1.360000e-100 377.0
17 TraesCS2D01G223000 chr2A 88.255 298 32 3 9 305 431582539 431582244 2.290000e-93 353.0
18 TraesCS2D01G223000 chr2A 88.015 267 17 7 3220 3478 763870265 763870524 8.420000e-78 302.0
19 TraesCS2D01G223000 chr2A 97.500 120 3 0 5034 5153 203899083 203898964 6.790000e-49 206.0
20 TraesCS2D01G223000 chr2A 91.241 137 11 1 3619 3754 702114328 702114192 8.850000e-43 185.0
21 TraesCS2D01G223000 chr2A 96.491 57 2 0 515 571 763866045 763866101 1.530000e-15 95.3
22 TraesCS2D01G223000 chr2A 85.915 71 9 1 4973 5042 203901541 203901471 2.000000e-09 75.0
23 TraesCS2D01G223000 chr2B 94.770 1568 58 7 344 1889 246264860 246263295 0.000000e+00 2420.0
24 TraesCS2D01G223000 chr2B 92.102 1684 91 22 1955 3622 246263287 246261630 0.000000e+00 2335.0
25 TraesCS2D01G223000 chr2B 88.612 1045 85 15 858 1887 797262408 797261383 0.000000e+00 1240.0
26 TraesCS2D01G223000 chr2B 88.325 1045 88 15 858 1887 797233915 797232890 0.000000e+00 1223.0
27 TraesCS2D01G223000 chr2B 85.860 1082 108 25 2039 3119 797261284 797260247 0.000000e+00 1109.0
28 TraesCS2D01G223000 chr2B 91.834 796 41 8 3797 4590 246261628 246260855 0.000000e+00 1088.0
29 TraesCS2D01G223000 chr2B 84.277 1113 110 28 2039 3119 797232804 797231725 0.000000e+00 1026.0
30 TraesCS2D01G223000 chr2B 95.431 394 16 2 4637 5029 246260844 246260452 1.220000e-175 627.0
31 TraesCS2D01G223000 chr2B 88.488 443 34 13 3800 4231 797231200 797230764 2.130000e-143 520.0
32 TraesCS2D01G223000 chr2B 85.596 361 32 8 3218 3564 797231654 797231300 1.370000e-95 361.0
33 TraesCS2D01G223000 chr2B 90.598 234 18 2 3218 3447 797260176 797259943 1.810000e-79 307.0
34 TraesCS2D01G223000 chr2B 92.308 156 12 0 5017 5172 246258437 246258282 6.740000e-54 222.0
35 TraesCS2D01G223000 chr2B 91.667 132 10 1 3623 3754 351605419 351605549 1.140000e-41 182.0
36 TraesCS2D01G223000 chr2B 79.724 217 44 0 2896 3112 237642897 237643113 1.930000e-34 158.0
37 TraesCS2D01G223000 chr2B 88.889 126 11 1 3800 3922 797259766 797259641 8.970000e-33 152.0
38 TraesCS2D01G223000 chr2B 87.218 133 6 3 3623 3755 233272044 233271923 1.940000e-29 141.0
39 TraesCS2D01G223000 chr2B 93.846 65 3 1 1894 1958 5757400 5757337 4.260000e-16 97.1
40 TraesCS2D01G223000 chr2B 92.188 64 4 1 1894 1957 107889070 107889008 7.130000e-14 89.8
41 TraesCS2D01G223000 chr2B 100.000 29 0 0 1628 1656 246367667 246367639 3.000000e-03 54.7
42 TraesCS2D01G223000 chrUn 85.347 1167 118 29 1955 3119 302673662 302674777 0.000000e+00 1158.0
43 TraesCS2D01G223000 chrUn 91.120 518 45 1 1376 1893 302673148 302673664 0.000000e+00 701.0
44 TraesCS2D01G223000 chrUn 90.691 376 26 5 1005 1380 280179314 280179680 4.650000e-135 492.0
45 TraesCS2D01G223000 chrUn 87.658 316 25 9 3924 4231 376029887 376030196 6.370000e-94 355.0
46 TraesCS2D01G223000 chrUn 91.556 225 15 2 3218 3438 302674848 302675072 1.810000e-79 307.0
47 TraesCS2D01G223000 chrUn 88.889 126 11 1 3800 3922 302675258 302675383 8.970000e-33 152.0
48 TraesCS2D01G223000 chr3D 84.452 566 62 16 4623 5172 45010252 45010807 7.620000e-148 534.0
49 TraesCS2D01G223000 chr3D 83.766 308 40 5 2 308 284990765 284991063 3.050000e-72 283.0
50 TraesCS2D01G223000 chr3D 94.286 70 3 1 1887 1956 590028418 590028350 7.080000e-19 106.0
51 TraesCS2D01G223000 chr3B 81.754 570 60 18 4623 5172 70117866 70118411 2.210000e-118 436.0
52 TraesCS2D01G223000 chr3B 83.234 334 39 10 4623 4949 70108609 70108932 1.820000e-74 291.0
53 TraesCS2D01G223000 chr3B 82.201 309 45 8 2 308 378214432 378214132 1.850000e-64 257.0
54 TraesCS2D01G223000 chr3B 93.985 133 8 0 3623 3755 801445376 801445244 8.780000e-48 202.0
55 TraesCS2D01G223000 chr3B 78.846 104 18 4 2644 2745 10390270 10390371 3.340000e-07 67.6
56 TraesCS2D01G223000 chr5B 88.925 307 25 8 3 304 268285842 268285540 2.280000e-98 370.0
57 TraesCS2D01G223000 chr5B 85.668 307 35 7 4 308 535389888 535389589 1.080000e-81 315.0
58 TraesCS2D01G223000 chr5B 84.039 307 37 9 3 305 491985555 491985853 8.480000e-73 285.0
59 TraesCS2D01G223000 chr5B 87.218 133 7 2 3624 3756 568820222 568820344 5.400000e-30 143.0
60 TraesCS2D01G223000 chr1D 87.043 301 31 8 9 305 223468938 223468642 2.990000e-87 333.0
61 TraesCS2D01G223000 chr6D 87.043 301 28 11 9 305 462688014 462688307 3.860000e-86 329.0
62 TraesCS2D01G223000 chr6D 79.851 402 39 20 4782 5172 95795139 95795509 6.650000e-64 255.0
63 TraesCS2D01G223000 chr6D 96.825 63 2 0 1894 1956 224660329 224660391 7.080000e-19 106.0
64 TraesCS2D01G223000 chr6D 93.651 63 4 0 1894 1956 174394459 174394397 1.530000e-15 95.3
65 TraesCS2D01G223000 chr6B 81.527 406 49 11 4782 5173 176772756 176772363 1.400000e-80 311.0
66 TraesCS2D01G223000 chr5D 83.557 298 37 10 9 302 134915062 134915351 8.540000e-68 268.0
67 TraesCS2D01G223000 chr5D 93.077 130 9 0 3623 3752 393559020 393559149 1.900000e-44 191.0
68 TraesCS2D01G223000 chr5D 95.238 63 3 0 1894 1956 133865963 133866025 3.300000e-17 100.0
69 TraesCS2D01G223000 chr5D 89.041 73 6 2 1884 1956 444540557 444540627 7.130000e-14 89.8
70 TraesCS2D01G223000 chr1B 91.736 121 9 1 3635 3755 600929429 600929310 3.200000e-37 167.0
71 TraesCS2D01G223000 chr5A 88.722 133 12 1 3624 3756 582630874 582631003 5.360000e-35 159.0
72 TraesCS2D01G223000 chr5A 88.060 134 13 3 3623 3755 596562915 596562784 6.940000e-34 156.0
73 TraesCS2D01G223000 chr5A 92.308 78 3 3 1882 1959 57448564 57448638 1.970000e-19 108.0
74 TraesCS2D01G223000 chr7D 82.759 174 22 7 4635 4808 39967808 39967973 1.160000e-31 148.0
75 TraesCS2D01G223000 chr4D 86.765 136 8 2 3617 3752 354879615 354879740 5.400000e-30 143.0
76 TraesCS2D01G223000 chr7B 95.238 63 2 1 1894 1956 203031990 203031929 1.190000e-16 99.0
77 TraesCS2D01G223000 chr6A 97.500 40 1 0 4239 4278 119338265 119338304 9.290000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G223000 chr2D 190031336 190036508 5172 True 9553.000000 9553 100.000000 1 5173 1 chr2D.!!$R1 5172
1 TraesCS2D01G223000 chr2D 638338327 638341971 3644 True 663.960000 1206 89.794600 858 4343 5 chr2D.!!$R3 3485
2 TraesCS2D01G223000 chr2A 203898964 203906773 7809 True 956.000000 2459 92.928286 346 5153 7 chr2A.!!$R3 4807
3 TraesCS2D01G223000 chr2A 763866045 763870989 4944 False 557.216667 1216 90.116667 515 4221 6 chr2A.!!$F1 3706
4 TraesCS2D01G223000 chr2B 246258282 246264860 6578 True 1338.400000 2420 93.289000 344 5172 5 chr2B.!!$R5 4828
5 TraesCS2D01G223000 chr2B 797230764 797233915 3151 True 782.500000 1223 86.671500 858 4231 4 chr2B.!!$R6 3373
6 TraesCS2D01G223000 chr2B 797259641 797262408 2767 True 702.000000 1240 88.489750 858 3922 4 chr2B.!!$R7 3064
7 TraesCS2D01G223000 chrUn 302673148 302675383 2235 False 579.500000 1158 89.228000 1376 3922 4 chrUn.!!$F3 2546
8 TraesCS2D01G223000 chr3D 45010252 45010807 555 False 534.000000 534 84.452000 4623 5172 1 chr3D.!!$F1 549
9 TraesCS2D01G223000 chr3B 70117866 70118411 545 False 436.000000 436 81.754000 4623 5172 1 chr3B.!!$F3 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.034863 TAAGAACCATGGAACGGGCC 60.035 55.0 21.47 0.00 0.00 5.80 F
275 276 0.039256 AGCAGCGTAAAACGGACGTA 60.039 50.0 0.00 0.00 42.82 3.57 F
276 277 0.091846 GCAGCGTAAAACGGACGTAC 59.908 55.0 0.00 0.00 42.82 3.67 F
277 278 0.359863 CAGCGTAAAACGGACGTACG 59.640 55.0 20.85 20.85 42.82 3.67 F
290 291 0.387239 ACGTACGTTTAGGGTCGTGC 60.387 55.0 16.72 0.00 40.50 5.34 F
861 2187 0.899720 CAACCCGGCCAACTAGACTA 59.100 55.0 2.24 0.00 0.00 2.59 F
1928 3283 0.392336 ATCTCTTCGATGCAGAGGCC 59.608 55.0 11.70 0.00 38.71 5.19 F
3635 6026 0.105246 TCCCATGGCCTTGTTTGGTT 60.105 50.0 16.81 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1909 3264 0.392336 GGCCTCTGCATCGAAGAGAT 59.608 55.000 13.12 0.00 43.27 2.75 R
1911 3266 1.591059 CGGCCTCTGCATCGAAGAG 60.591 63.158 0.00 5.75 43.63 2.85 R
1912 3267 2.496341 CGGCCTCTGCATCGAAGA 59.504 61.111 0.00 0.00 45.75 2.87 R
1913 3268 2.587194 CCGGCCTCTGCATCGAAG 60.587 66.667 0.00 0.00 40.13 3.79 R
1921 3276 3.866582 GTCATCCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35 R
2433 4060 1.004679 GTAAACCGGACCGAAGCCA 60.005 57.895 17.49 0.00 0.00 4.75 R
3704 6095 0.031817 AAGGGGATTGGCAGGGATTG 60.032 55.000 0.00 0.00 0.00 2.67 R
4518 6925 0.739462 TTGACTTGTCGCCGGCATAG 60.739 55.000 28.98 18.68 0.00 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 6.904498 TGTTTATGTTAAGAACCATGGAACG 58.096 36.000 21.47 0.00 0.00 3.95
46 47 6.072397 TGTTTATGTTAAGAACCATGGAACGG 60.072 38.462 21.47 0.00 0.00 4.44
47 48 2.785562 TGTTAAGAACCATGGAACGGG 58.214 47.619 21.47 0.00 0.00 5.28
48 49 1.471287 GTTAAGAACCATGGAACGGGC 59.529 52.381 21.47 0.43 0.00 6.13
49 50 0.034863 TAAGAACCATGGAACGGGCC 60.035 55.000 21.47 0.00 0.00 5.80
50 51 2.034999 GAACCATGGAACGGGCCA 59.965 61.111 21.47 0.78 43.23 5.36
51 52 2.035626 AACCATGGAACGGGCCAG 59.964 61.111 21.47 1.85 42.15 4.85
52 53 2.764637 GAACCATGGAACGGGCCAGT 62.765 60.000 21.47 2.79 42.15 4.00
53 54 2.035626 CCATGGAACGGGCCAGTT 59.964 61.111 21.91 21.91 42.15 3.16
55 56 1.002134 CATGGAACGGGCCAGTTCT 60.002 57.895 36.75 22.42 46.99 3.01
56 57 0.251916 CATGGAACGGGCCAGTTCTA 59.748 55.000 36.75 33.88 46.99 2.10
57 58 0.988832 ATGGAACGGGCCAGTTCTAA 59.011 50.000 36.75 28.29 46.99 2.10
58 59 0.323629 TGGAACGGGCCAGTTCTAAG 59.676 55.000 36.75 8.55 46.99 2.18
59 60 0.392595 GGAACGGGCCAGTTCTAAGG 60.393 60.000 36.75 5.75 46.99 2.69
68 69 3.685139 CCAGTTCTAAGGCTGTGAAGA 57.315 47.619 3.17 0.00 0.00 2.87
69 70 3.330267 CCAGTTCTAAGGCTGTGAAGAC 58.670 50.000 3.17 0.00 0.00 3.01
70 71 3.007398 CCAGTTCTAAGGCTGTGAAGACT 59.993 47.826 3.17 0.00 0.00 3.24
71 72 3.993081 CAGTTCTAAGGCTGTGAAGACTG 59.007 47.826 3.17 5.46 0.00 3.51
72 73 3.643792 AGTTCTAAGGCTGTGAAGACTGT 59.356 43.478 3.17 0.00 0.00 3.55
73 74 4.101741 AGTTCTAAGGCTGTGAAGACTGTT 59.898 41.667 3.17 0.00 0.00 3.16
74 75 4.689612 TCTAAGGCTGTGAAGACTGTTT 57.310 40.909 0.00 0.00 0.00 2.83
75 76 5.801531 TCTAAGGCTGTGAAGACTGTTTA 57.198 39.130 0.00 0.00 0.00 2.01
76 77 6.169557 TCTAAGGCTGTGAAGACTGTTTAA 57.830 37.500 0.00 0.00 0.00 1.52
77 78 6.769512 TCTAAGGCTGTGAAGACTGTTTAAT 58.230 36.000 0.00 0.00 0.00 1.40
78 79 7.224297 TCTAAGGCTGTGAAGACTGTTTAATT 58.776 34.615 0.00 0.00 0.00 1.40
79 80 8.372459 TCTAAGGCTGTGAAGACTGTTTAATTA 58.628 33.333 0.00 0.00 0.00 1.40
80 81 9.167311 CTAAGGCTGTGAAGACTGTTTAATTAT 57.833 33.333 0.00 0.00 0.00 1.28
81 82 7.383102 AGGCTGTGAAGACTGTTTAATTATG 57.617 36.000 0.00 0.00 0.00 1.90
82 83 6.942576 AGGCTGTGAAGACTGTTTAATTATGT 59.057 34.615 0.00 0.00 0.00 2.29
83 84 7.448469 AGGCTGTGAAGACTGTTTAATTATGTT 59.552 33.333 0.00 0.00 0.00 2.71
84 85 8.082242 GGCTGTGAAGACTGTTTAATTATGTTT 58.918 33.333 0.00 0.00 0.00 2.83
85 86 9.463443 GCTGTGAAGACTGTTTAATTATGTTTT 57.537 29.630 0.00 0.00 0.00 2.43
134 135 5.971895 TCAGCATTTCTTTGAGTTTTTGC 57.028 34.783 0.00 0.00 0.00 3.68
135 136 4.503734 TCAGCATTTCTTTGAGTTTTTGCG 59.496 37.500 0.00 0.00 34.20 4.85
136 137 4.503734 CAGCATTTCTTTGAGTTTTTGCGA 59.496 37.500 0.00 0.00 34.20 5.10
137 138 5.176223 CAGCATTTCTTTGAGTTTTTGCGAT 59.824 36.000 0.00 0.00 34.20 4.58
138 139 5.754890 AGCATTTCTTTGAGTTTTTGCGATT 59.245 32.000 0.00 0.00 34.20 3.34
139 140 6.258507 AGCATTTCTTTGAGTTTTTGCGATTT 59.741 30.769 0.00 0.00 34.20 2.17
140 141 6.906678 GCATTTCTTTGAGTTTTTGCGATTTT 59.093 30.769 0.00 0.00 0.00 1.82
141 142 7.429051 GCATTTCTTTGAGTTTTTGCGATTTTT 59.571 29.630 0.00 0.00 0.00 1.94
159 160 2.894763 TTTATATCACGTCCACCCCG 57.105 50.000 0.00 0.00 0.00 5.73
160 161 1.042229 TTATATCACGTCCACCCCGG 58.958 55.000 0.00 0.00 0.00 5.73
161 162 0.185658 TATATCACGTCCACCCCGGA 59.814 55.000 0.73 0.00 43.61 5.14
169 170 3.646932 TCCACCCCGGACTTGATAT 57.353 52.632 0.73 0.00 39.64 1.63
170 171 1.128200 TCCACCCCGGACTTGATATG 58.872 55.000 0.73 0.00 39.64 1.78
171 172 0.535102 CCACCCCGGACTTGATATGC 60.535 60.000 0.73 0.00 36.56 3.14
172 173 0.469917 CACCCCGGACTTGATATGCT 59.530 55.000 0.73 0.00 0.00 3.79
173 174 0.469917 ACCCCGGACTTGATATGCTG 59.530 55.000 0.73 0.00 0.00 4.41
174 175 0.469917 CCCCGGACTTGATATGCTGT 59.530 55.000 0.73 0.00 0.00 4.40
175 176 1.586422 CCCGGACTTGATATGCTGTG 58.414 55.000 0.73 0.00 0.00 3.66
176 177 0.940126 CCGGACTTGATATGCTGTGC 59.060 55.000 0.00 0.00 0.00 4.57
177 178 0.578683 CGGACTTGATATGCTGTGCG 59.421 55.000 0.00 0.00 37.83 5.34
178 179 0.940126 GGACTTGATATGCTGTGCGG 59.060 55.000 0.00 0.00 0.00 5.69
179 180 0.305922 GACTTGATATGCTGTGCGGC 59.694 55.000 0.00 0.00 0.00 6.53
180 181 1.097547 ACTTGATATGCTGTGCGGCC 61.098 55.000 0.00 0.00 0.00 6.13
181 182 2.109538 CTTGATATGCTGTGCGGCCG 62.110 60.000 24.05 24.05 0.00 6.13
182 183 4.017877 GATATGCTGTGCGGCCGC 62.018 66.667 42.35 42.35 42.35 6.53
212 213 3.414700 CCGACACGGCAACAGCTC 61.415 66.667 0.00 0.00 41.17 4.09
213 214 3.414700 CGACACGGCAACAGCTCC 61.415 66.667 0.00 0.00 0.00 4.70
214 215 2.280797 GACACGGCAACAGCTCCA 60.281 61.111 0.00 0.00 0.00 3.86
215 216 1.891919 GACACGGCAACAGCTCCAA 60.892 57.895 0.00 0.00 0.00 3.53
216 217 1.444119 GACACGGCAACAGCTCCAAA 61.444 55.000 0.00 0.00 0.00 3.28
217 218 1.008538 CACGGCAACAGCTCCAAAC 60.009 57.895 0.00 0.00 0.00 2.93
218 219 1.453015 ACGGCAACAGCTCCAAACA 60.453 52.632 0.00 0.00 0.00 2.83
219 220 1.034838 ACGGCAACAGCTCCAAACAA 61.035 50.000 0.00 0.00 0.00 2.83
220 221 0.102120 CGGCAACAGCTCCAAACAAA 59.898 50.000 0.00 0.00 0.00 2.83
221 222 1.570813 GGCAACAGCTCCAAACAAAC 58.429 50.000 0.00 0.00 0.00 2.93
222 223 1.134848 GGCAACAGCTCCAAACAAACA 60.135 47.619 0.00 0.00 0.00 2.83
223 224 2.483538 GGCAACAGCTCCAAACAAACAT 60.484 45.455 0.00 0.00 0.00 2.71
224 225 2.540931 GCAACAGCTCCAAACAAACATG 59.459 45.455 0.00 0.00 0.00 3.21
225 226 3.125316 CAACAGCTCCAAACAAACATGG 58.875 45.455 0.00 0.00 38.09 3.66
226 227 1.688197 ACAGCTCCAAACAAACATGGG 59.312 47.619 0.00 0.00 37.31 4.00
227 228 0.681175 AGCTCCAAACAAACATGGGC 59.319 50.000 0.00 0.00 37.31 5.36
228 229 0.667184 GCTCCAAACAAACATGGGCG 60.667 55.000 0.00 0.00 37.31 6.13
229 230 0.958091 CTCCAAACAAACATGGGCGA 59.042 50.000 0.00 0.00 37.31 5.54
230 231 1.545582 CTCCAAACAAACATGGGCGAT 59.454 47.619 0.00 0.00 37.31 4.58
231 232 1.543802 TCCAAACAAACATGGGCGATC 59.456 47.619 0.00 0.00 37.31 3.69
232 233 1.404047 CCAAACAAACATGGGCGATCC 60.404 52.381 0.00 0.00 32.87 3.36
233 234 1.545582 CAAACAAACATGGGCGATCCT 59.454 47.619 0.00 0.00 36.20 3.24
234 235 2.752354 CAAACAAACATGGGCGATCCTA 59.248 45.455 0.00 0.00 36.20 2.94
235 236 3.297134 AACAAACATGGGCGATCCTAT 57.703 42.857 0.00 0.00 33.32 2.57
236 237 3.297134 ACAAACATGGGCGATCCTATT 57.703 42.857 0.00 0.00 30.26 1.73
237 238 2.951642 ACAAACATGGGCGATCCTATTG 59.048 45.455 0.00 0.00 30.26 1.90
238 239 1.609208 AACATGGGCGATCCTATTGC 58.391 50.000 0.00 0.00 39.00 3.56
239 240 0.767375 ACATGGGCGATCCTATTGCT 59.233 50.000 0.00 0.00 39.67 3.91
240 241 1.162698 CATGGGCGATCCTATTGCTG 58.837 55.000 0.00 0.00 39.67 4.41
241 242 0.607489 ATGGGCGATCCTATTGCTGC 60.607 55.000 0.00 0.00 39.67 5.25
242 243 1.968540 GGGCGATCCTATTGCTGCC 60.969 63.158 0.00 0.00 39.67 4.85
243 244 1.968540 GGCGATCCTATTGCTGCCC 60.969 63.158 0.00 0.00 39.67 5.36
244 245 1.968540 GCGATCCTATTGCTGCCCC 60.969 63.158 0.00 0.00 36.71 5.80
245 246 1.451504 CGATCCTATTGCTGCCCCA 59.548 57.895 0.00 0.00 0.00 4.96
246 247 0.179020 CGATCCTATTGCTGCCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
247 248 1.750332 CGATCCTATTGCTGCCCCAAA 60.750 52.381 0.00 0.00 0.00 3.28
248 249 1.683385 GATCCTATTGCTGCCCCAAAC 59.317 52.381 0.00 0.00 0.00 2.93
249 250 0.679640 TCCTATTGCTGCCCCAAACG 60.680 55.000 0.00 0.00 0.00 3.60
250 251 1.666209 CCTATTGCTGCCCCAAACGG 61.666 60.000 0.00 0.00 0.00 4.44
251 252 0.679640 CTATTGCTGCCCCAAACGGA 60.680 55.000 0.00 0.00 0.00 4.69
252 253 0.963355 TATTGCTGCCCCAAACGGAC 60.963 55.000 0.00 0.00 0.00 4.79
255 256 2.281208 CTGCCCCAAACGGACGAA 60.281 61.111 0.00 0.00 0.00 3.85
256 257 1.894756 CTGCCCCAAACGGACGAAA 60.895 57.895 0.00 0.00 0.00 3.46
257 258 1.852067 CTGCCCCAAACGGACGAAAG 61.852 60.000 0.00 0.00 0.00 2.62
258 259 2.951458 CCCCAAACGGACGAAAGC 59.049 61.111 0.00 0.00 0.00 3.51
259 260 1.894756 CCCCAAACGGACGAAAGCA 60.895 57.895 0.00 0.00 0.00 3.91
260 261 1.574428 CCCAAACGGACGAAAGCAG 59.426 57.895 0.00 0.00 0.00 4.24
261 262 1.082104 CCAAACGGACGAAAGCAGC 60.082 57.895 0.00 0.00 0.00 5.25
262 263 1.438710 CAAACGGACGAAAGCAGCG 60.439 57.895 0.00 0.00 0.00 5.18
263 264 1.885850 AAACGGACGAAAGCAGCGT 60.886 52.632 0.00 0.00 45.79 5.07
264 265 0.598158 AAACGGACGAAAGCAGCGTA 60.598 50.000 0.00 0.00 42.77 4.42
265 266 0.598158 AACGGACGAAAGCAGCGTAA 60.598 50.000 0.00 0.00 42.77 3.18
266 267 0.598158 ACGGACGAAAGCAGCGTAAA 60.598 50.000 0.00 0.00 42.77 2.01
267 268 0.509499 CGGACGAAAGCAGCGTAAAA 59.491 50.000 0.00 0.00 42.77 1.52
268 269 1.720547 CGGACGAAAGCAGCGTAAAAC 60.721 52.381 0.00 0.00 42.77 2.43
269 270 1.577221 GACGAAAGCAGCGTAAAACG 58.423 50.000 0.00 0.00 45.88 3.60
270 271 0.233848 ACGAAAGCAGCGTAAAACGG 59.766 50.000 1.25 0.00 42.82 4.44
271 272 0.509499 CGAAAGCAGCGTAAAACGGA 59.491 50.000 1.25 0.00 42.82 4.69
272 273 1.720547 CGAAAGCAGCGTAAAACGGAC 60.721 52.381 1.25 0.00 42.82 4.79
273 274 0.233848 AAAGCAGCGTAAAACGGACG 59.766 50.000 1.25 0.00 42.82 4.79
274 275 0.877213 AAGCAGCGTAAAACGGACGT 60.877 50.000 1.25 0.00 42.82 4.34
275 276 0.039256 AGCAGCGTAAAACGGACGTA 60.039 50.000 0.00 0.00 42.82 3.57
276 277 0.091846 GCAGCGTAAAACGGACGTAC 59.908 55.000 0.00 0.00 42.82 3.67
277 278 0.359863 CAGCGTAAAACGGACGTACG 59.640 55.000 20.85 20.85 42.82 3.67
285 286 2.641197 ACGGACGTACGTTTAGGGT 58.359 52.632 22.62 12.79 46.25 4.34
286 287 0.521735 ACGGACGTACGTTTAGGGTC 59.478 55.000 22.62 7.43 46.25 4.46
287 288 0.521242 CGGACGTACGTTTAGGGTCG 60.521 60.000 23.70 13.18 0.00 4.79
288 289 0.521735 GGACGTACGTTTAGGGTCGT 59.478 55.000 23.70 0.00 42.82 4.34
289 290 1.606606 GACGTACGTTTAGGGTCGTG 58.393 55.000 23.70 0.00 40.50 4.35
290 291 0.387239 ACGTACGTTTAGGGTCGTGC 60.387 55.000 16.72 0.00 40.50 5.34
291 292 2.352814 GTACGTTTAGGGTCGTGCG 58.647 57.895 0.00 0.00 40.50 5.34
292 293 1.444212 TACGTTTAGGGTCGTGCGC 60.444 57.895 0.00 0.00 40.50 6.09
293 294 1.865788 TACGTTTAGGGTCGTGCGCT 61.866 55.000 9.73 5.00 43.25 5.92
294 295 2.726691 CGTTTAGGGTCGTGCGCTG 61.727 63.158 9.73 0.40 40.80 5.18
295 296 2.047655 TTTAGGGTCGTGCGCTGG 60.048 61.111 9.73 0.00 40.80 4.85
296 297 2.575893 TTTAGGGTCGTGCGCTGGA 61.576 57.895 9.73 2.32 40.80 3.86
297 298 2.501223 TTTAGGGTCGTGCGCTGGAG 62.501 60.000 9.73 0.00 40.80 3.86
299 300 4.681978 GGGTCGTGCGCTGGAGTT 62.682 66.667 9.73 0.00 0.00 3.01
300 301 3.414700 GGTCGTGCGCTGGAGTTG 61.415 66.667 9.73 0.00 0.00 3.16
301 302 3.414700 GTCGTGCGCTGGAGTTGG 61.415 66.667 9.73 0.00 0.00 3.77
305 306 4.269523 TGCGCTGGAGTTGGCCTT 62.270 61.111 9.73 0.00 0.00 4.35
306 307 2.046314 GCGCTGGAGTTGGCCTTA 60.046 61.111 3.32 0.00 0.00 2.69
307 308 1.452108 GCGCTGGAGTTGGCCTTAT 60.452 57.895 3.32 0.00 0.00 1.73
308 309 1.718757 GCGCTGGAGTTGGCCTTATG 61.719 60.000 3.32 0.00 0.00 1.90
309 310 1.718757 CGCTGGAGTTGGCCTTATGC 61.719 60.000 3.32 0.00 40.16 3.14
318 319 3.737824 GCCTTATGCCTCCGCTTC 58.262 61.111 0.00 0.00 35.36 3.86
319 320 2.247437 GCCTTATGCCTCCGCTTCG 61.247 63.158 0.00 0.00 35.36 3.79
449 450 4.562000 GGTAGAAACTAGAAGCAAGTACGC 59.438 45.833 0.00 0.00 0.00 4.42
589 671 5.240891 ACTGTGTATCTGGTGAACATCAAG 58.759 41.667 0.00 0.00 0.00 3.02
624 706 3.108289 CACACGCTGAGACGCAGG 61.108 66.667 8.36 1.22 45.03 4.85
679 1722 1.199327 CTCAGCTCAGCATGGTTGTTG 59.801 52.381 0.00 0.00 36.16 3.33
721 1764 3.192466 GGTATTTACACGTGCAGGGTAG 58.808 50.000 17.22 2.95 40.31 3.18
766 2091 4.355543 TCTGCGTAATCAAATTCTTGCC 57.644 40.909 0.00 0.00 32.14 4.52
854 2180 2.203294 ACTGTCAACCCGGCCAAC 60.203 61.111 2.24 0.00 0.00 3.77
861 2187 0.899720 CAACCCGGCCAACTAGACTA 59.100 55.000 2.24 0.00 0.00 2.59
870 2196 3.008704 GGCCAACTAGACTAAAGGAACCA 59.991 47.826 0.00 0.00 0.00 3.67
891 2218 2.881074 TCGCAGAAAAATCGGAGAGAG 58.119 47.619 0.00 0.00 43.63 3.20
913 2240 3.784338 CAAATGACAGCAACCAACAACT 58.216 40.909 0.00 0.00 0.00 3.16
938 2265 4.154918 CCATCTTGTTGTAGCCTTTGACTC 59.845 45.833 0.00 0.00 0.00 3.36
955 2284 2.619646 GACTCTGCCAACCCGTTTAAAA 59.380 45.455 0.00 0.00 0.00 1.52
1367 2718 2.156051 GAGAGGGACGCCACGTTCTT 62.156 60.000 0.00 0.00 41.37 2.52
1518 2869 1.261238 CCCGGAGCTTCTTCCTGTCT 61.261 60.000 0.73 0.00 34.96 3.41
1855 3206 3.005791 ACCAACAGAAAGCAATGGTAAGC 59.994 43.478 0.00 0.00 42.38 3.09
1908 3263 6.897259 TTATCAAGTAAAGTGGTCGTATGC 57.103 37.500 0.00 0.00 0.00 3.14
1909 3264 4.260139 TCAAGTAAAGTGGTCGTATGCA 57.740 40.909 0.00 0.00 0.00 3.96
1910 3265 4.827692 TCAAGTAAAGTGGTCGTATGCAT 58.172 39.130 3.79 3.79 0.00 3.96
1911 3266 4.868171 TCAAGTAAAGTGGTCGTATGCATC 59.132 41.667 0.19 0.00 0.00 3.91
1912 3267 4.737855 AGTAAAGTGGTCGTATGCATCT 57.262 40.909 0.19 0.00 0.00 2.90
1913 3268 4.683832 AGTAAAGTGGTCGTATGCATCTC 58.316 43.478 0.19 0.00 0.00 2.75
1914 3269 3.895232 AAAGTGGTCGTATGCATCTCT 57.105 42.857 0.19 0.00 0.00 3.10
1915 3270 3.895232 AAGTGGTCGTATGCATCTCTT 57.105 42.857 0.19 0.00 0.00 2.85
1916 3271 3.444703 AGTGGTCGTATGCATCTCTTC 57.555 47.619 0.19 0.00 0.00 2.87
1917 3272 2.120232 GTGGTCGTATGCATCTCTTCG 58.880 52.381 0.19 2.20 0.00 3.79
1918 3273 2.021457 TGGTCGTATGCATCTCTTCGA 58.979 47.619 0.19 4.68 0.00 3.71
1919 3274 2.623416 TGGTCGTATGCATCTCTTCGAT 59.377 45.455 0.19 0.00 0.00 3.59
1927 3282 1.500108 CATCTCTTCGATGCAGAGGC 58.500 55.000 11.70 0.00 42.75 4.70
1928 3283 0.392336 ATCTCTTCGATGCAGAGGCC 59.608 55.000 11.70 0.00 38.71 5.19
1929 3284 1.591059 CTCTTCGATGCAGAGGCCG 60.591 63.158 0.00 0.00 40.13 6.13
1930 3285 2.587194 CTTCGATGCAGAGGCCGG 60.587 66.667 0.00 0.00 40.13 6.13
1931 3286 4.161295 TTCGATGCAGAGGCCGGG 62.161 66.667 2.18 0.00 40.13 5.73
1938 3293 3.866582 CAGAGGCCGGGGGATGAC 61.867 72.222 2.18 0.00 0.00 3.06
1951 3306 4.586306 GGGGATGACCTCCTTTTCTAAA 57.414 45.455 0.00 0.00 44.28 1.85
1952 3307 4.930696 GGGGATGACCTCCTTTTCTAAAA 58.069 43.478 0.00 0.00 44.28 1.52
1953 3308 5.330233 GGGGATGACCTCCTTTTCTAAAAA 58.670 41.667 0.00 0.00 44.28 1.94
2142 3759 1.108727 TGTTGGTTGGCTGCCTTCTG 61.109 55.000 21.03 0.00 0.00 3.02
2205 3828 6.209192 AGACAACACATTGCAAGAATATTCCA 59.791 34.615 11.92 0.47 39.66 3.53
2212 3837 6.759827 ACATTGCAAGAATATTCCATGCTTTC 59.240 34.615 29.30 12.73 39.71 2.62
2226 3851 3.953712 TGCTTTCTCTCGACACCATTA 57.046 42.857 0.00 0.00 0.00 1.90
2228 3853 4.832248 TGCTTTCTCTCGACACCATTAAT 58.168 39.130 0.00 0.00 0.00 1.40
2229 3854 5.245531 TGCTTTCTCTCGACACCATTAATT 58.754 37.500 0.00 0.00 0.00 1.40
2240 3865 7.327975 TCGACACCATTAATTCTAACTCATGT 58.672 34.615 0.00 0.00 0.00 3.21
2433 4060 0.759346 AGAACAAGCTCGGACAAGGT 59.241 50.000 0.00 0.00 0.00 3.50
2467 4106 3.119280 GGTTTACAAGGCACGCCATTTAT 60.119 43.478 11.35 0.00 38.92 1.40
2468 4107 4.096682 GGTTTACAAGGCACGCCATTTATA 59.903 41.667 11.35 0.00 38.92 0.98
2470 4109 3.775661 ACAAGGCACGCCATTTATAAC 57.224 42.857 11.35 0.00 38.92 1.89
2471 4110 2.425668 ACAAGGCACGCCATTTATAACC 59.574 45.455 11.35 0.00 38.92 2.85
2472 4111 2.425312 CAAGGCACGCCATTTATAACCA 59.575 45.455 11.35 0.00 38.92 3.67
2473 4112 2.944129 AGGCACGCCATTTATAACCAT 58.056 42.857 11.35 0.00 38.92 3.55
2474 4113 2.622942 AGGCACGCCATTTATAACCATG 59.377 45.455 11.35 0.00 38.92 3.66
2475 4114 2.360801 GGCACGCCATTTATAACCATGT 59.639 45.455 2.36 0.00 35.81 3.21
2491 4130 6.554334 AACCATGTATGTAATAATGCGACC 57.446 37.500 0.00 0.00 0.00 4.79
2518 4166 6.267496 TGATTGATCGATCGAAGGCTAATA 57.733 37.500 23.50 2.19 0.00 0.98
2522 4170 7.582435 TTGATCGATCGAAGGCTAATATTTC 57.418 36.000 23.50 10.71 0.00 2.17
2531 4185 6.759827 TCGAAGGCTAATATTTCTGTTACCAC 59.240 38.462 0.00 0.00 0.00 4.16
2533 4187 7.042658 CGAAGGCTAATATTTCTGTTACCACTC 60.043 40.741 0.00 0.00 0.00 3.51
2534 4188 6.592870 AGGCTAATATTTCTGTTACCACTCC 58.407 40.000 0.00 0.00 0.00 3.85
2741 4395 3.058160 CTGCCCAACCGAAGCCTG 61.058 66.667 0.00 0.00 0.00 4.85
2763 4417 7.146648 CCTGGACTTCTTTATCTTCGGTATAC 58.853 42.308 0.00 0.00 0.00 1.47
2881 4983 7.592938 TGATAACTTTTTGCAATGTAGACCAG 58.407 34.615 0.00 0.00 0.00 4.00
2929 5031 1.095228 AACGGCGGCACATAATGGAG 61.095 55.000 13.24 0.00 0.00 3.86
3223 5368 7.555554 GCTGATTGGATTATACTAATGCTCCAT 59.444 37.037 0.00 0.00 33.10 3.41
3439 5588 4.678509 TTTTAGCTGCATGAGTTAACGG 57.321 40.909 1.02 0.00 27.88 4.44
3445 5594 2.147958 TGCATGAGTTAACGGGAACAC 58.852 47.619 0.00 0.00 0.00 3.32
3469 5625 1.269206 ACACGCTTCCGACGAACTTAA 60.269 47.619 0.00 0.00 38.29 1.85
3470 5626 1.385743 CACGCTTCCGACGAACTTAAG 59.614 52.381 0.00 0.00 38.29 1.85
3471 5627 1.267806 ACGCTTCCGACGAACTTAAGA 59.732 47.619 10.09 0.00 38.29 2.10
3472 5628 1.647702 CGCTTCCGACGAACTTAAGAC 59.352 52.381 10.09 2.05 36.29 3.01
3473 5629 2.669364 GCTTCCGACGAACTTAAGACA 58.331 47.619 10.09 0.00 0.00 3.41
3476 5632 4.151867 GCTTCCGACGAACTTAAGACATTT 59.848 41.667 10.09 0.00 0.00 2.32
3478 5634 5.130292 TCCGACGAACTTAAGACATTTCT 57.870 39.130 10.09 0.00 0.00 2.52
3479 5635 5.535333 TCCGACGAACTTAAGACATTTCTT 58.465 37.500 10.09 0.00 44.70 2.52
3480 5636 6.680810 TCCGACGAACTTAAGACATTTCTTA 58.319 36.000 10.09 0.00 42.44 2.10
3508 5673 5.533528 GGTTAAACCCTAGCTTTCTTGTTCA 59.466 40.000 0.00 0.00 30.04 3.18
3602 5943 0.944311 AACGTAAGCCACTGACAGCG 60.944 55.000 1.25 0.00 45.62 5.18
3616 6007 0.319728 ACAGCGACTGTCTGCAGAAT 59.680 50.000 20.19 7.08 41.21 2.40
3622 6013 2.286872 GACTGTCTGCAGAATCCCATG 58.713 52.381 20.19 8.61 45.28 3.66
3623 6014 1.064906 ACTGTCTGCAGAATCCCATGG 60.065 52.381 20.19 4.14 45.28 3.66
3624 6015 0.394762 TGTCTGCAGAATCCCATGGC 60.395 55.000 20.19 2.87 0.00 4.40
3625 6016 1.105759 GTCTGCAGAATCCCATGGCC 61.106 60.000 20.19 0.00 0.00 5.36
3626 6017 1.229359 CTGCAGAATCCCATGGCCT 59.771 57.895 8.42 0.00 0.00 5.19
3627 6018 0.396695 CTGCAGAATCCCATGGCCTT 60.397 55.000 8.42 0.85 0.00 4.35
3628 6019 0.685131 TGCAGAATCCCATGGCCTTG 60.685 55.000 6.09 11.68 0.00 3.61
3629 6020 0.685458 GCAGAATCCCATGGCCTTGT 60.685 55.000 16.81 0.00 0.00 3.16
3630 6021 1.856629 CAGAATCCCATGGCCTTGTT 58.143 50.000 16.81 5.38 0.00 2.83
3631 6022 2.181975 CAGAATCCCATGGCCTTGTTT 58.818 47.619 16.81 7.90 0.00 2.83
3632 6023 2.093869 CAGAATCCCATGGCCTTGTTTG 60.094 50.000 16.81 5.91 0.00 2.93
3633 6024 1.207811 GAATCCCATGGCCTTGTTTGG 59.792 52.381 16.81 11.18 0.00 3.28
3634 6025 0.116940 ATCCCATGGCCTTGTTTGGT 59.883 50.000 16.81 0.00 0.00 3.67
3635 6026 0.105246 TCCCATGGCCTTGTTTGGTT 60.105 50.000 16.81 0.00 0.00 3.67
3636 6027 1.148027 TCCCATGGCCTTGTTTGGTTA 59.852 47.619 16.81 0.00 0.00 2.85
3637 6028 1.974236 CCCATGGCCTTGTTTGGTTAA 59.026 47.619 16.81 0.00 0.00 2.01
3638 6029 2.571202 CCCATGGCCTTGTTTGGTTAAT 59.429 45.455 16.81 0.00 0.00 1.40
3639 6030 3.369366 CCCATGGCCTTGTTTGGTTAATC 60.369 47.826 16.81 0.00 0.00 1.75
3640 6031 3.369366 CCATGGCCTTGTTTGGTTAATCC 60.369 47.826 16.81 0.00 0.00 3.01
3641 6032 3.252554 TGGCCTTGTTTGGTTAATCCT 57.747 42.857 3.32 0.00 37.07 3.24
3642 6033 3.582164 TGGCCTTGTTTGGTTAATCCTT 58.418 40.909 3.32 0.00 37.07 3.36
3643 6034 3.576550 TGGCCTTGTTTGGTTAATCCTTC 59.423 43.478 3.32 0.00 37.07 3.46
3644 6035 3.832490 GGCCTTGTTTGGTTAATCCTTCT 59.168 43.478 0.00 0.00 37.07 2.85
3645 6036 4.082190 GGCCTTGTTTGGTTAATCCTTCTC 60.082 45.833 0.00 0.00 37.07 2.87
3646 6037 4.082190 GCCTTGTTTGGTTAATCCTTCTCC 60.082 45.833 0.00 0.00 37.07 3.71
3647 6038 4.462834 CCTTGTTTGGTTAATCCTTCTCCC 59.537 45.833 0.00 0.00 37.07 4.30
3648 6039 4.733077 TGTTTGGTTAATCCTTCTCCCA 57.267 40.909 0.00 0.00 37.07 4.37
3649 6040 5.068215 TGTTTGGTTAATCCTTCTCCCAA 57.932 39.130 0.00 0.00 37.07 4.12
3650 6041 5.076873 TGTTTGGTTAATCCTTCTCCCAAG 58.923 41.667 0.00 0.00 33.82 3.61
3651 6042 4.316025 TTGGTTAATCCTTCTCCCAAGG 57.684 45.455 0.00 0.00 38.78 3.61
3652 6043 2.580783 TGGTTAATCCTTCTCCCAAGGG 59.419 50.000 0.00 0.00 37.99 3.95
3653 6044 2.091830 GGTTAATCCTTCTCCCAAGGGG 60.092 54.545 5.08 0.00 46.11 4.79
3654 6045 6.893814 TGGTTAATCCTTCTCCCAAGGGGA 62.894 50.000 5.08 3.57 42.79 4.81
3667 6058 2.941480 CAAGGGGATTGGAGAGGATTG 58.059 52.381 0.00 0.00 35.08 2.67
3668 6059 2.511218 CAAGGGGATTGGAGAGGATTGA 59.489 50.000 0.00 0.00 35.08 2.57
3669 6060 2.863884 AGGGGATTGGAGAGGATTGAA 58.136 47.619 0.00 0.00 0.00 2.69
3670 6061 2.782341 AGGGGATTGGAGAGGATTGAAG 59.218 50.000 0.00 0.00 0.00 3.02
3671 6062 2.158549 GGGGATTGGAGAGGATTGAAGG 60.159 54.545 0.00 0.00 0.00 3.46
3672 6063 2.780010 GGGATTGGAGAGGATTGAAGGA 59.220 50.000 0.00 0.00 0.00 3.36
3673 6064 3.181446 GGGATTGGAGAGGATTGAAGGAG 60.181 52.174 0.00 0.00 0.00 3.69
3674 6065 3.713764 GGATTGGAGAGGATTGAAGGAGA 59.286 47.826 0.00 0.00 0.00 3.71
3675 6066 4.350520 GGATTGGAGAGGATTGAAGGAGAT 59.649 45.833 0.00 0.00 0.00 2.75
3676 6067 5.163109 GGATTGGAGAGGATTGAAGGAGATT 60.163 44.000 0.00 0.00 0.00 2.40
3677 6068 5.786121 TTGGAGAGGATTGAAGGAGATTT 57.214 39.130 0.00 0.00 0.00 2.17
3678 6069 5.786121 TGGAGAGGATTGAAGGAGATTTT 57.214 39.130 0.00 0.00 0.00 1.82
3679 6070 5.503927 TGGAGAGGATTGAAGGAGATTTTG 58.496 41.667 0.00 0.00 0.00 2.44
3680 6071 4.886489 GGAGAGGATTGAAGGAGATTTTGG 59.114 45.833 0.00 0.00 0.00 3.28
3681 6072 4.276642 AGAGGATTGAAGGAGATTTTGGC 58.723 43.478 0.00 0.00 0.00 4.52
3682 6073 4.017683 AGAGGATTGAAGGAGATTTTGGCT 60.018 41.667 0.00 0.00 0.00 4.75
3683 6074 4.681484 AGGATTGAAGGAGATTTTGGCTT 58.319 39.130 0.00 0.00 0.00 4.35
3684 6075 4.465305 AGGATTGAAGGAGATTTTGGCTTG 59.535 41.667 0.00 0.00 0.00 4.01
3685 6076 3.665745 TTGAAGGAGATTTTGGCTTGC 57.334 42.857 0.00 0.00 0.00 4.01
3686 6077 2.596346 TGAAGGAGATTTTGGCTTGCA 58.404 42.857 0.00 0.00 0.00 4.08
3687 6078 2.559668 TGAAGGAGATTTTGGCTTGCAG 59.440 45.455 0.00 0.00 0.00 4.41
3688 6079 1.553706 AGGAGATTTTGGCTTGCAGG 58.446 50.000 0.00 0.00 0.00 4.85
3689 6080 0.533951 GGAGATTTTGGCTTGCAGGG 59.466 55.000 0.00 0.00 0.00 4.45
3690 6081 0.533951 GAGATTTTGGCTTGCAGGGG 59.466 55.000 0.00 0.00 0.00 4.79
3691 6082 0.114954 AGATTTTGGCTTGCAGGGGA 59.885 50.000 0.00 0.00 0.00 4.81
3692 6083 1.197812 GATTTTGGCTTGCAGGGGAT 58.802 50.000 0.00 0.00 0.00 3.85
3693 6084 1.556451 GATTTTGGCTTGCAGGGGATT 59.444 47.619 0.00 0.00 0.00 3.01
3694 6085 1.433121 TTTTGGCTTGCAGGGGATTT 58.567 45.000 0.00 0.00 0.00 2.17
3695 6086 2.317371 TTTGGCTTGCAGGGGATTTA 57.683 45.000 0.00 0.00 0.00 1.40
3696 6087 2.317371 TTGGCTTGCAGGGGATTTAA 57.683 45.000 0.00 0.00 0.00 1.52
3697 6088 2.548464 TGGCTTGCAGGGGATTTAAT 57.452 45.000 0.00 0.00 0.00 1.40
3698 6089 2.387757 TGGCTTGCAGGGGATTTAATC 58.612 47.619 0.00 0.00 0.00 1.75
3713 6104 3.297134 TTAATCCACCTCAATCCCTGC 57.703 47.619 0.00 0.00 0.00 4.85
3714 6105 0.259938 AATCCACCTCAATCCCTGCC 59.740 55.000 0.00 0.00 0.00 4.85
3715 6106 0.920763 ATCCACCTCAATCCCTGCCA 60.921 55.000 0.00 0.00 0.00 4.92
3716 6107 1.139498 TCCACCTCAATCCCTGCCAA 61.139 55.000 0.00 0.00 0.00 4.52
3717 6108 0.032813 CCACCTCAATCCCTGCCAAT 60.033 55.000 0.00 0.00 0.00 3.16
3718 6109 1.396653 CACCTCAATCCCTGCCAATC 58.603 55.000 0.00 0.00 0.00 2.67
3719 6110 0.259938 ACCTCAATCCCTGCCAATCC 59.740 55.000 0.00 0.00 0.00 3.01
3720 6111 0.468771 CCTCAATCCCTGCCAATCCC 60.469 60.000 0.00 0.00 0.00 3.85
3721 6112 0.468771 CTCAATCCCTGCCAATCCCC 60.469 60.000 0.00 0.00 0.00 4.81
3722 6113 0.925720 TCAATCCCTGCCAATCCCCT 60.926 55.000 0.00 0.00 0.00 4.79
3723 6114 0.031817 CAATCCCTGCCAATCCCCTT 60.032 55.000 0.00 0.00 0.00 3.95
3724 6115 0.262876 AATCCCTGCCAATCCCCTTC 59.737 55.000 0.00 0.00 0.00 3.46
3725 6116 0.925720 ATCCCTGCCAATCCCCTTCA 60.926 55.000 0.00 0.00 0.00 3.02
3726 6117 1.145900 TCCCTGCCAATCCCCTTCAA 61.146 55.000 0.00 0.00 0.00 2.69
3727 6118 0.252193 CCCTGCCAATCCCCTTCAAA 60.252 55.000 0.00 0.00 0.00 2.69
3728 6119 1.623279 CCCTGCCAATCCCCTTCAAAT 60.623 52.381 0.00 0.00 0.00 2.32
3729 6120 1.758862 CCTGCCAATCCCCTTCAAATC 59.241 52.381 0.00 0.00 0.00 2.17
3730 6121 1.758862 CTGCCAATCCCCTTCAAATCC 59.241 52.381 0.00 0.00 0.00 3.01
3731 6122 1.078490 TGCCAATCCCCTTCAAATCCA 59.922 47.619 0.00 0.00 0.00 3.41
3732 6123 1.482182 GCCAATCCCCTTCAAATCCAC 59.518 52.381 0.00 0.00 0.00 4.02
3733 6124 2.110578 CCAATCCCCTTCAAATCCACC 58.889 52.381 0.00 0.00 0.00 4.61
3734 6125 2.292455 CCAATCCCCTTCAAATCCACCT 60.292 50.000 0.00 0.00 0.00 4.00
3735 6126 3.026694 CAATCCCCTTCAAATCCACCTC 58.973 50.000 0.00 0.00 0.00 3.85
3736 6127 1.753903 TCCCCTTCAAATCCACCTCA 58.246 50.000 0.00 0.00 0.00 3.86
3737 6128 2.069775 TCCCCTTCAAATCCACCTCAA 58.930 47.619 0.00 0.00 0.00 3.02
3738 6129 2.448961 TCCCCTTCAAATCCACCTCAAA 59.551 45.455 0.00 0.00 0.00 2.69
3739 6130 2.562738 CCCCTTCAAATCCACCTCAAAC 59.437 50.000 0.00 0.00 0.00 2.93
3740 6131 2.562738 CCCTTCAAATCCACCTCAAACC 59.437 50.000 0.00 0.00 0.00 3.27
3741 6132 2.228822 CCTTCAAATCCACCTCAAACCG 59.771 50.000 0.00 0.00 0.00 4.44
3742 6133 2.940994 TCAAATCCACCTCAAACCGA 57.059 45.000 0.00 0.00 0.00 4.69
3743 6134 3.216187 TCAAATCCACCTCAAACCGAA 57.784 42.857 0.00 0.00 0.00 4.30
3744 6135 2.882137 TCAAATCCACCTCAAACCGAAC 59.118 45.455 0.00 0.00 0.00 3.95
3745 6136 2.621055 CAAATCCACCTCAAACCGAACA 59.379 45.455 0.00 0.00 0.00 3.18
3746 6137 2.649531 ATCCACCTCAAACCGAACAA 57.350 45.000 0.00 0.00 0.00 2.83
3747 6138 2.421751 TCCACCTCAAACCGAACAAA 57.578 45.000 0.00 0.00 0.00 2.83
3748 6139 2.294074 TCCACCTCAAACCGAACAAAG 58.706 47.619 0.00 0.00 0.00 2.77
3749 6140 1.269051 CCACCTCAAACCGAACAAAGC 60.269 52.381 0.00 0.00 0.00 3.51
3750 6141 1.029681 ACCTCAAACCGAACAAAGCC 58.970 50.000 0.00 0.00 0.00 4.35
3755 6146 4.287720 CTCAAACCGAACAAAGCCTTAAC 58.712 43.478 0.00 0.00 0.00 2.01
3763 6154 4.851558 CGAACAAAGCCTTAACTAATGTGC 59.148 41.667 0.00 0.00 0.00 4.57
3767 6158 2.356135 AGCCTTAACTAATGTGCCGTG 58.644 47.619 0.00 0.00 0.00 4.94
3768 6159 2.081462 GCCTTAACTAATGTGCCGTGT 58.919 47.619 0.00 0.00 0.00 4.49
3769 6160 3.055675 AGCCTTAACTAATGTGCCGTGTA 60.056 43.478 0.00 0.00 0.00 2.90
3772 6163 5.503520 GCCTTAACTAATGTGCCGTGTAATC 60.504 44.000 0.00 0.00 0.00 1.75
3773 6164 5.815740 CCTTAACTAATGTGCCGTGTAATCT 59.184 40.000 0.00 0.00 0.00 2.40
3775 6166 7.148306 CCTTAACTAATGTGCCGTGTAATCTTT 60.148 37.037 0.00 0.00 0.00 2.52
3776 6167 6.569179 AACTAATGTGCCGTGTAATCTTTT 57.431 33.333 0.00 0.00 0.00 2.27
3777 6168 5.938322 ACTAATGTGCCGTGTAATCTTTTG 58.062 37.500 0.00 0.00 0.00 2.44
3778 6169 2.697431 TGTGCCGTGTAATCTTTTGC 57.303 45.000 0.00 0.00 0.00 3.68
3779 6170 1.268352 TGTGCCGTGTAATCTTTTGCC 59.732 47.619 0.00 0.00 0.00 4.52
3780 6171 1.539827 GTGCCGTGTAATCTTTTGCCT 59.460 47.619 0.00 0.00 0.00 4.75
3781 6172 2.030274 GTGCCGTGTAATCTTTTGCCTT 60.030 45.455 0.00 0.00 0.00 4.35
3782 6173 2.030363 TGCCGTGTAATCTTTTGCCTTG 60.030 45.455 0.00 0.00 0.00 3.61
3783 6174 2.030274 GCCGTGTAATCTTTTGCCTTGT 60.030 45.455 0.00 0.00 0.00 3.16
3784 6175 3.552068 GCCGTGTAATCTTTTGCCTTGTT 60.552 43.478 0.00 0.00 0.00 2.83
3785 6176 4.616953 CCGTGTAATCTTTTGCCTTGTTT 58.383 39.130 0.00 0.00 0.00 2.83
3786 6177 4.679654 CCGTGTAATCTTTTGCCTTGTTTC 59.320 41.667 0.00 0.00 0.00 2.78
3787 6178 5.277825 CGTGTAATCTTTTGCCTTGTTTCA 58.722 37.500 0.00 0.00 0.00 2.69
3788 6179 5.746245 CGTGTAATCTTTTGCCTTGTTTCAA 59.254 36.000 0.00 0.00 0.00 2.69
3789 6180 6.254589 CGTGTAATCTTTTGCCTTGTTTCAAA 59.745 34.615 0.00 0.00 0.00 2.69
3790 6181 7.201478 CGTGTAATCTTTTGCCTTGTTTCAAAA 60.201 33.333 0.00 0.00 39.13 2.44
3791 6182 8.447053 GTGTAATCTTTTGCCTTGTTTCAAAAA 58.553 29.630 0.00 0.00 40.36 1.94
4191 6586 4.034510 GGTGATTGCTTTCTCCTATTCGTG 59.965 45.833 0.00 0.00 0.00 4.35
4225 6631 1.067416 TGTGTCTCAGTGTCCGTGC 59.933 57.895 0.00 0.00 0.00 5.34
4230 6636 0.319813 TCTCAGTGTCCGTGCATGTG 60.320 55.000 4.96 0.00 0.00 3.21
4246 6652 1.153549 GTGGACAGGCAGACGGATC 60.154 63.158 0.00 0.00 0.00 3.36
4277 6683 1.971167 GATGTTTCCGGCTGTGGCA 60.971 57.895 0.00 0.00 40.87 4.92
4279 6685 2.594592 GTTTCCGGCTGTGGCACT 60.595 61.111 19.83 0.00 40.87 4.40
4281 6687 4.680237 TTCCGGCTGTGGCACTCG 62.680 66.667 19.83 18.11 40.87 4.18
4292 6698 3.075005 GCACTCGGCCTACTGGGA 61.075 66.667 0.00 0.00 37.23 4.37
4345 6751 7.940178 TGTTGTACAGATTATACGCTATTGG 57.060 36.000 0.00 0.00 0.00 3.16
4360 6766 3.995199 CTATTGGATAGCGCAAGAGGAA 58.005 45.455 11.47 0.00 43.02 3.36
4361 6767 2.779755 TTGGATAGCGCAAGAGGAAA 57.220 45.000 11.47 0.00 43.02 3.13
4371 6777 5.007682 AGCGCAAGAGGAAACCTAAAATTA 58.992 37.500 11.47 0.00 43.02 1.40
4374 6780 7.012421 AGCGCAAGAGGAAACCTAAAATTATAG 59.988 37.037 11.47 0.00 43.02 1.31
4375 6781 7.639945 CGCAAGAGGAAACCTAAAATTATAGG 58.360 38.462 0.00 0.00 44.19 2.57
4376 6782 7.497909 CGCAAGAGGAAACCTAAAATTATAGGA 59.502 37.037 7.34 0.00 42.33 2.94
4435 6842 6.700081 ACGAAAAAGGAAAAAGGAAATGTAGC 59.300 34.615 0.00 0.00 0.00 3.58
4483 6890 2.604686 TCGCAGAGGGTTGGCTCT 60.605 61.111 0.00 0.00 0.00 4.09
4484 6891 2.217038 TCGCAGAGGGTTGGCTCTT 61.217 57.895 0.00 0.00 0.00 2.85
4485 6892 2.037136 CGCAGAGGGTTGGCTCTTG 61.037 63.158 0.00 0.00 0.00 3.02
4486 6893 2.338785 GCAGAGGGTTGGCTCTTGC 61.339 63.158 0.00 0.00 38.76 4.01
4487 6894 1.377994 CAGAGGGTTGGCTCTTGCT 59.622 57.895 0.00 0.00 39.59 3.91
4490 6897 0.037447 GAGGGTTGGCTCTTGCTCTT 59.963 55.000 0.00 0.00 39.59 2.85
4500 6907 3.929610 GGCTCTTGCTCTTACAGTAACAG 59.070 47.826 0.00 0.00 39.59 3.16
4508 6915 5.243954 TGCTCTTACAGTAACAGATGTGAGT 59.756 40.000 0.00 0.00 35.27 3.41
4518 6925 2.289072 ACAGATGTGAGTGTAGGTGTGC 60.289 50.000 0.00 0.00 0.00 4.57
4560 6968 1.401409 CGTGCAAATGCGAACCTGATT 60.401 47.619 0.35 0.00 45.83 2.57
4634 7053 5.393678 GGCGAATATGGGTATTGTTTGTGTT 60.394 40.000 0.00 0.00 30.75 3.32
4640 7059 4.290942 TGGGTATTGTTTGTGTTTTCCCT 58.709 39.130 0.00 0.00 34.14 4.20
4815 7510 7.065563 CAGACTAAAGTTGCTCTTAGATTGCAT 59.934 37.037 0.00 0.00 36.55 3.96
4907 7602 7.347448 GGCAACTGAAAATTAGCAAAAGAAAG 58.653 34.615 0.00 0.00 0.00 2.62
4973 7671 5.235516 TCAGTTCTCATACGAAGAAAACCC 58.764 41.667 0.00 0.00 0.00 4.11
5112 12849 1.078143 ACCTCCGCAGAAGCAATCC 60.078 57.895 0.00 0.00 42.27 3.01
5157 12894 1.200716 CGTAGCACACTAGAAACCCGA 59.799 52.381 0.00 0.00 0.00 5.14
5172 12909 4.508128 CGATAGCCGGCCGTGTGT 62.508 66.667 26.15 8.85 33.91 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 8.670135 CGTTCCATGGTTCTTAACATAAACATA 58.330 33.333 12.58 0.00 31.33 2.29
20 21 7.362574 CCGTTCCATGGTTCTTAACATAAACAT 60.363 37.037 12.58 0.00 33.31 2.71
21 22 6.072397 CCGTTCCATGGTTCTTAACATAAACA 60.072 38.462 12.58 0.00 0.00 2.83
22 23 6.319399 CCGTTCCATGGTTCTTAACATAAAC 58.681 40.000 12.58 3.12 0.00 2.01
23 24 5.416326 CCCGTTCCATGGTTCTTAACATAAA 59.584 40.000 12.58 0.00 0.00 1.40
24 25 4.944930 CCCGTTCCATGGTTCTTAACATAA 59.055 41.667 12.58 0.00 0.00 1.90
25 26 4.519213 CCCGTTCCATGGTTCTTAACATA 58.481 43.478 12.58 0.00 0.00 2.29
26 27 3.352648 CCCGTTCCATGGTTCTTAACAT 58.647 45.455 12.58 0.00 0.00 2.71
27 28 2.785562 CCCGTTCCATGGTTCTTAACA 58.214 47.619 12.58 0.00 0.00 2.41
28 29 1.471287 GCCCGTTCCATGGTTCTTAAC 59.529 52.381 12.58 7.41 0.00 2.01
29 30 1.614850 GGCCCGTTCCATGGTTCTTAA 60.615 52.381 12.58 0.00 0.00 1.85
30 31 0.034863 GGCCCGTTCCATGGTTCTTA 60.035 55.000 12.58 0.00 0.00 2.10
31 32 1.304134 GGCCCGTTCCATGGTTCTT 60.304 57.895 12.58 0.00 0.00 2.52
32 33 2.355115 GGCCCGTTCCATGGTTCT 59.645 61.111 12.58 0.00 0.00 3.01
33 34 2.034999 TGGCCCGTTCCATGGTTC 59.965 61.111 12.58 5.28 0.00 3.62
34 35 2.035626 CTGGCCCGTTCCATGGTT 59.964 61.111 12.58 0.00 35.22 3.67
35 36 2.764637 GAACTGGCCCGTTCCATGGT 62.765 60.000 25.10 0.00 37.82 3.55
36 37 2.035626 AACTGGCCCGTTCCATGG 59.964 61.111 6.74 4.97 35.22 3.66
37 38 0.251916 TAGAACTGGCCCGTTCCATG 59.748 55.000 29.84 1.27 43.27 3.66
38 39 0.988832 TTAGAACTGGCCCGTTCCAT 59.011 50.000 29.84 18.43 43.27 3.41
39 40 0.323629 CTTAGAACTGGCCCGTTCCA 59.676 55.000 29.84 18.45 43.27 3.53
40 41 0.392595 CCTTAGAACTGGCCCGTTCC 60.393 60.000 29.84 16.02 43.27 3.62
41 42 1.025113 GCCTTAGAACTGGCCCGTTC 61.025 60.000 27.35 27.35 43.11 3.95
42 43 1.002502 GCCTTAGAACTGGCCCGTT 60.003 57.895 12.90 12.90 43.11 4.44
43 44 2.669240 GCCTTAGAACTGGCCCGT 59.331 61.111 0.00 0.00 43.11 5.28
48 49 3.007398 AGTCTTCACAGCCTTAGAACTGG 59.993 47.826 7.06 0.00 38.25 4.00
49 50 3.993081 CAGTCTTCACAGCCTTAGAACTG 59.007 47.826 1.59 1.59 39.86 3.16
50 51 3.643792 ACAGTCTTCACAGCCTTAGAACT 59.356 43.478 0.00 0.00 0.00 3.01
51 52 3.996480 ACAGTCTTCACAGCCTTAGAAC 58.004 45.455 0.00 0.00 0.00 3.01
52 53 4.689612 AACAGTCTTCACAGCCTTAGAA 57.310 40.909 0.00 0.00 0.00 2.10
53 54 4.689612 AAACAGTCTTCACAGCCTTAGA 57.310 40.909 0.00 0.00 0.00 2.10
54 55 7.440523 AATTAAACAGTCTTCACAGCCTTAG 57.559 36.000 0.00 0.00 0.00 2.18
55 56 8.946085 CATAATTAAACAGTCTTCACAGCCTTA 58.054 33.333 0.00 0.00 0.00 2.69
56 57 7.448469 ACATAATTAAACAGTCTTCACAGCCTT 59.552 33.333 0.00 0.00 0.00 4.35
57 58 6.942576 ACATAATTAAACAGTCTTCACAGCCT 59.057 34.615 0.00 0.00 0.00 4.58
58 59 7.145932 ACATAATTAAACAGTCTTCACAGCC 57.854 36.000 0.00 0.00 0.00 4.85
59 60 9.463443 AAAACATAATTAAACAGTCTTCACAGC 57.537 29.630 0.00 0.00 0.00 4.40
108 109 7.750014 GCAAAAACTCAAAGAAATGCTGAAAAA 59.250 29.630 0.00 0.00 0.00 1.94
109 110 7.242783 GCAAAAACTCAAAGAAATGCTGAAAA 58.757 30.769 0.00 0.00 0.00 2.29
110 111 6.455380 CGCAAAAACTCAAAGAAATGCTGAAA 60.455 34.615 0.00 0.00 0.00 2.69
111 112 5.005586 CGCAAAAACTCAAAGAAATGCTGAA 59.994 36.000 0.00 0.00 0.00 3.02
112 113 4.503734 CGCAAAAACTCAAAGAAATGCTGA 59.496 37.500 0.00 0.00 0.00 4.26
113 114 4.503734 TCGCAAAAACTCAAAGAAATGCTG 59.496 37.500 0.00 0.00 0.00 4.41
114 115 4.681744 TCGCAAAAACTCAAAGAAATGCT 58.318 34.783 0.00 0.00 0.00 3.79
115 116 5.580911 ATCGCAAAAACTCAAAGAAATGC 57.419 34.783 0.00 0.00 0.00 3.56
116 117 8.825064 AAAAATCGCAAAAACTCAAAGAAATG 57.175 26.923 0.00 0.00 0.00 2.32
138 139 3.533547 CGGGGTGGACGTGATATAAAAA 58.466 45.455 0.00 0.00 0.00 1.94
139 140 2.158928 CCGGGGTGGACGTGATATAAAA 60.159 50.000 0.00 0.00 42.00 1.52
140 141 1.413445 CCGGGGTGGACGTGATATAAA 59.587 52.381 0.00 0.00 42.00 1.40
141 142 1.042229 CCGGGGTGGACGTGATATAA 58.958 55.000 0.00 0.00 42.00 0.98
142 143 0.185658 TCCGGGGTGGACGTGATATA 59.814 55.000 0.00 0.00 43.74 0.86
143 144 1.075822 TCCGGGGTGGACGTGATAT 60.076 57.895 0.00 0.00 43.74 1.63
144 145 2.359797 TCCGGGGTGGACGTGATA 59.640 61.111 0.00 0.00 43.74 2.15
152 153 0.535102 GCATATCAAGTCCGGGGTGG 60.535 60.000 0.00 0.00 40.09 4.61
153 154 0.469917 AGCATATCAAGTCCGGGGTG 59.530 55.000 0.00 0.00 0.00 4.61
154 155 0.469917 CAGCATATCAAGTCCGGGGT 59.530 55.000 0.00 0.00 0.00 4.95
155 156 0.469917 ACAGCATATCAAGTCCGGGG 59.530 55.000 0.00 0.00 0.00 5.73
156 157 1.586422 CACAGCATATCAAGTCCGGG 58.414 55.000 0.00 0.00 0.00 5.73
157 158 0.940126 GCACAGCATATCAAGTCCGG 59.060 55.000 0.00 0.00 0.00 5.14
158 159 0.578683 CGCACAGCATATCAAGTCCG 59.421 55.000 0.00 0.00 0.00 4.79
159 160 0.940126 CCGCACAGCATATCAAGTCC 59.060 55.000 0.00 0.00 0.00 3.85
160 161 0.305922 GCCGCACAGCATATCAAGTC 59.694 55.000 0.00 0.00 0.00 3.01
161 162 1.097547 GGCCGCACAGCATATCAAGT 61.098 55.000 0.00 0.00 0.00 3.16
162 163 1.650912 GGCCGCACAGCATATCAAG 59.349 57.895 0.00 0.00 0.00 3.02
163 164 2.179547 CGGCCGCACAGCATATCAA 61.180 57.895 14.67 0.00 0.00 2.57
164 165 2.588596 CGGCCGCACAGCATATCA 60.589 61.111 14.67 0.00 0.00 2.15
165 166 4.017877 GCGGCCGCACAGCATATC 62.018 66.667 43.55 11.09 39.55 1.63
183 184 2.586635 TGTCGGTGCGTCCAACAC 60.587 61.111 0.00 0.00 37.31 3.32
184 185 2.586635 GTGTCGGTGCGTCCAACA 60.587 61.111 0.00 0.00 35.57 3.33
185 186 3.698463 CGTGTCGGTGCGTCCAAC 61.698 66.667 0.00 0.00 35.57 3.77
186 187 4.953868 CCGTGTCGGTGCGTCCAA 62.954 66.667 0.00 0.00 42.73 3.53
196 197 3.414700 GGAGCTGTTGCCGTGTCG 61.415 66.667 0.00 0.00 40.80 4.35
197 198 1.444119 TTTGGAGCTGTTGCCGTGTC 61.444 55.000 0.00 0.00 40.80 3.67
198 199 1.453015 TTTGGAGCTGTTGCCGTGT 60.453 52.632 0.00 0.00 40.80 4.49
199 200 1.008538 GTTTGGAGCTGTTGCCGTG 60.009 57.895 0.00 0.00 40.80 4.94
200 201 1.034838 TTGTTTGGAGCTGTTGCCGT 61.035 50.000 0.00 0.00 40.80 5.68
201 202 0.102120 TTTGTTTGGAGCTGTTGCCG 59.898 50.000 0.00 0.00 40.80 5.69
202 203 1.134848 TGTTTGTTTGGAGCTGTTGCC 60.135 47.619 0.00 0.00 40.80 4.52
203 204 2.292103 TGTTTGTTTGGAGCTGTTGC 57.708 45.000 0.00 0.00 40.05 4.17
204 205 3.125316 CCATGTTTGTTTGGAGCTGTTG 58.875 45.455 0.00 0.00 34.81 3.33
205 206 2.102925 CCCATGTTTGTTTGGAGCTGTT 59.897 45.455 0.00 0.00 34.81 3.16
206 207 1.688197 CCCATGTTTGTTTGGAGCTGT 59.312 47.619 0.00 0.00 34.81 4.40
207 208 1.606224 GCCCATGTTTGTTTGGAGCTG 60.606 52.381 0.00 0.00 34.81 4.24
208 209 0.681175 GCCCATGTTTGTTTGGAGCT 59.319 50.000 0.00 0.00 34.81 4.09
209 210 0.667184 CGCCCATGTTTGTTTGGAGC 60.667 55.000 0.00 0.00 34.81 4.70
210 211 0.958091 TCGCCCATGTTTGTTTGGAG 59.042 50.000 0.00 0.00 34.81 3.86
211 212 1.543802 GATCGCCCATGTTTGTTTGGA 59.456 47.619 0.00 0.00 34.81 3.53
212 213 1.404047 GGATCGCCCATGTTTGTTTGG 60.404 52.381 0.00 0.00 34.14 3.28
213 214 1.545582 AGGATCGCCCATGTTTGTTTG 59.454 47.619 0.00 0.00 37.41 2.93
214 215 1.923356 AGGATCGCCCATGTTTGTTT 58.077 45.000 0.00 0.00 37.41 2.83
215 216 2.799126 TAGGATCGCCCATGTTTGTT 57.201 45.000 0.00 0.00 37.41 2.83
216 217 2.951642 CAATAGGATCGCCCATGTTTGT 59.048 45.455 0.00 0.00 37.41 2.83
217 218 2.287788 GCAATAGGATCGCCCATGTTTG 60.288 50.000 0.00 0.00 37.41 2.93
218 219 1.956477 GCAATAGGATCGCCCATGTTT 59.044 47.619 0.00 0.00 37.41 2.83
219 220 1.143684 AGCAATAGGATCGCCCATGTT 59.856 47.619 0.00 0.00 37.41 2.71
220 221 0.767375 AGCAATAGGATCGCCCATGT 59.233 50.000 0.00 0.00 37.41 3.21
221 222 1.162698 CAGCAATAGGATCGCCCATG 58.837 55.000 0.00 0.00 37.41 3.66
222 223 0.607489 GCAGCAATAGGATCGCCCAT 60.607 55.000 0.00 0.00 37.41 4.00
223 224 1.227943 GCAGCAATAGGATCGCCCA 60.228 57.895 0.00 0.00 37.41 5.36
224 225 1.968540 GGCAGCAATAGGATCGCCC 60.969 63.158 0.00 0.00 33.31 6.13
225 226 1.968540 GGGCAGCAATAGGATCGCC 60.969 63.158 0.00 0.00 38.85 5.54
226 227 1.968540 GGGGCAGCAATAGGATCGC 60.969 63.158 0.00 0.00 0.00 4.58
227 228 0.179020 TTGGGGCAGCAATAGGATCG 60.179 55.000 0.00 0.00 0.00 3.69
228 229 1.683385 GTTTGGGGCAGCAATAGGATC 59.317 52.381 0.00 0.00 0.00 3.36
229 230 1.780503 GTTTGGGGCAGCAATAGGAT 58.219 50.000 0.00 0.00 0.00 3.24
230 231 0.679640 CGTTTGGGGCAGCAATAGGA 60.680 55.000 0.00 0.00 0.00 2.94
231 232 1.666209 CCGTTTGGGGCAGCAATAGG 61.666 60.000 0.00 0.00 0.00 2.57
232 233 0.679640 TCCGTTTGGGGCAGCAATAG 60.680 55.000 0.00 0.00 36.01 1.73
233 234 0.963355 GTCCGTTTGGGGCAGCAATA 60.963 55.000 0.00 0.00 41.38 1.90
234 235 2.117206 TCCGTTTGGGGCAGCAAT 59.883 55.556 0.00 0.00 36.01 3.56
235 236 2.909965 GTCCGTTTGGGGCAGCAA 60.910 61.111 0.00 0.00 41.38 3.91
238 239 1.852067 CTTTCGTCCGTTTGGGGCAG 61.852 60.000 0.00 0.00 42.07 4.85
239 240 1.894756 CTTTCGTCCGTTTGGGGCA 60.895 57.895 0.00 0.00 42.07 5.36
240 241 2.951458 CTTTCGTCCGTTTGGGGC 59.049 61.111 0.00 0.00 36.91 5.80
241 242 1.852067 CTGCTTTCGTCCGTTTGGGG 61.852 60.000 0.00 0.00 36.01 4.96
242 243 1.574428 CTGCTTTCGTCCGTTTGGG 59.426 57.895 0.00 0.00 35.24 4.12
243 244 1.082104 GCTGCTTTCGTCCGTTTGG 60.082 57.895 0.00 0.00 0.00 3.28
244 245 1.438710 CGCTGCTTTCGTCCGTTTG 60.439 57.895 0.00 0.00 0.00 2.93
245 246 0.598158 TACGCTGCTTTCGTCCGTTT 60.598 50.000 0.00 0.00 40.89 3.60
246 247 0.598158 TTACGCTGCTTTCGTCCGTT 60.598 50.000 0.00 0.00 40.89 4.44
247 248 0.598158 TTTACGCTGCTTTCGTCCGT 60.598 50.000 0.00 0.00 40.89 4.69
248 249 0.509499 TTTTACGCTGCTTTCGTCCG 59.491 50.000 0.00 0.00 40.89 4.79
249 250 1.720547 CGTTTTACGCTGCTTTCGTCC 60.721 52.381 0.00 0.00 40.89 4.79
250 251 1.577221 CGTTTTACGCTGCTTTCGTC 58.423 50.000 0.00 0.00 40.89 4.20
251 252 0.233848 CCGTTTTACGCTGCTTTCGT 59.766 50.000 0.00 4.20 40.91 3.85
252 253 0.509499 TCCGTTTTACGCTGCTTTCG 59.491 50.000 0.00 0.00 40.91 3.46
253 254 1.720547 CGTCCGTTTTACGCTGCTTTC 60.721 52.381 0.00 0.00 40.91 2.62
254 255 0.233848 CGTCCGTTTTACGCTGCTTT 59.766 50.000 0.00 0.00 40.91 3.51
255 256 0.877213 ACGTCCGTTTTACGCTGCTT 60.877 50.000 0.00 0.00 44.04 3.91
256 257 0.039256 TACGTCCGTTTTACGCTGCT 60.039 50.000 0.00 0.00 44.04 4.24
257 258 0.091846 GTACGTCCGTTTTACGCTGC 59.908 55.000 0.00 0.00 44.04 5.25
258 259 0.359863 CGTACGTCCGTTTTACGCTG 59.640 55.000 7.22 0.00 44.04 5.18
259 260 0.040425 ACGTACGTCCGTTTTACGCT 60.040 50.000 16.72 0.00 44.04 5.07
260 261 2.420097 ACGTACGTCCGTTTTACGC 58.580 52.632 16.72 0.00 44.04 4.42
267 268 0.521735 GACCCTAAACGTACGTCCGT 59.478 55.000 23.05 12.80 44.23 4.69
268 269 0.521242 CGACCCTAAACGTACGTCCG 60.521 60.000 23.05 12.46 0.00 4.79
269 270 0.521735 ACGACCCTAAACGTACGTCC 59.478 55.000 23.05 4.46 40.92 4.79
270 271 1.606606 CACGACCCTAAACGTACGTC 58.393 55.000 23.05 6.14 40.76 4.34
271 272 0.387239 GCACGACCCTAAACGTACGT 60.387 55.000 16.72 16.72 40.76 3.57
272 273 1.398022 CGCACGACCCTAAACGTACG 61.398 60.000 15.01 15.01 41.39 3.67
273 274 1.677353 GCGCACGACCCTAAACGTAC 61.677 60.000 0.30 0.00 40.76 3.67
274 275 1.444212 GCGCACGACCCTAAACGTA 60.444 57.895 0.30 0.00 40.76 3.57
275 276 2.735857 GCGCACGACCCTAAACGT 60.736 61.111 0.30 0.00 43.50 3.99
276 277 2.431942 AGCGCACGACCCTAAACG 60.432 61.111 11.47 0.00 0.00 3.60
277 278 2.388232 CCAGCGCACGACCCTAAAC 61.388 63.158 11.47 0.00 0.00 2.01
278 279 2.047655 CCAGCGCACGACCCTAAA 60.048 61.111 11.47 0.00 0.00 1.85
279 280 2.992689 TCCAGCGCACGACCCTAA 60.993 61.111 11.47 0.00 0.00 2.69
280 281 3.449227 CTCCAGCGCACGACCCTA 61.449 66.667 11.47 0.00 0.00 3.53
282 283 4.681978 AACTCCAGCGCACGACCC 62.682 66.667 11.47 0.00 0.00 4.46
283 284 3.414700 CAACTCCAGCGCACGACC 61.415 66.667 11.47 0.00 0.00 4.79
284 285 3.414700 CCAACTCCAGCGCACGAC 61.415 66.667 11.47 0.00 0.00 4.34
288 289 2.196997 ATAAGGCCAACTCCAGCGCA 62.197 55.000 11.47 0.00 0.00 6.09
289 290 1.452108 ATAAGGCCAACTCCAGCGC 60.452 57.895 5.01 0.00 0.00 5.92
290 291 1.718757 GCATAAGGCCAACTCCAGCG 61.719 60.000 5.01 0.00 36.11 5.18
291 292 2.110296 GCATAAGGCCAACTCCAGC 58.890 57.895 5.01 0.00 36.11 4.85
301 302 2.247437 CGAAGCGGAGGCATAAGGC 61.247 63.158 0.00 0.00 43.41 4.35
302 303 4.033894 CGAAGCGGAGGCATAAGG 57.966 61.111 0.00 0.00 43.41 2.69
325 326 5.365314 TCAATGCCTGTCTTAAAGGGTTTTT 59.635 36.000 0.00 0.00 35.17 1.94
326 327 4.898861 TCAATGCCTGTCTTAAAGGGTTTT 59.101 37.500 0.00 0.00 35.17 2.43
327 328 4.479158 TCAATGCCTGTCTTAAAGGGTTT 58.521 39.130 0.00 0.00 35.17 3.27
328 329 4.112634 TCAATGCCTGTCTTAAAGGGTT 57.887 40.909 0.00 0.00 35.17 4.11
329 330 3.806949 TCAATGCCTGTCTTAAAGGGT 57.193 42.857 0.00 0.00 35.17 4.34
330 331 3.382546 CCATCAATGCCTGTCTTAAAGGG 59.617 47.826 0.00 0.00 35.17 3.95
331 332 4.019174 ACCATCAATGCCTGTCTTAAAGG 58.981 43.478 0.00 0.00 37.91 3.11
332 333 5.183713 TGAACCATCAATGCCTGTCTTAAAG 59.816 40.000 0.00 0.00 30.99 1.85
333 334 5.076182 TGAACCATCAATGCCTGTCTTAAA 58.924 37.500 0.00 0.00 30.99 1.52
334 335 4.661222 TGAACCATCAATGCCTGTCTTAA 58.339 39.130 0.00 0.00 30.99 1.85
335 336 4.299586 TGAACCATCAATGCCTGTCTTA 57.700 40.909 0.00 0.00 30.99 2.10
336 337 3.159213 TGAACCATCAATGCCTGTCTT 57.841 42.857 0.00 0.00 30.99 3.01
337 338 2.885135 TGAACCATCAATGCCTGTCT 57.115 45.000 0.00 0.00 30.99 3.41
338 339 3.940209 TTTGAACCATCAATGCCTGTC 57.060 42.857 0.00 0.00 44.70 3.51
339 340 3.007182 CCTTTTGAACCATCAATGCCTGT 59.993 43.478 0.00 0.00 44.70 4.00
340 341 3.592059 CCTTTTGAACCATCAATGCCTG 58.408 45.455 0.00 0.00 44.70 4.85
341 342 2.027837 GCCTTTTGAACCATCAATGCCT 60.028 45.455 0.00 0.00 44.70 4.75
342 343 2.027837 AGCCTTTTGAACCATCAATGCC 60.028 45.455 0.00 0.00 44.70 4.40
449 450 1.413812 AGGCTGGCCTGTTTTCAAAAG 59.586 47.619 13.84 0.00 46.22 2.27
476 477 1.351153 GCAGACGACTTTGAGGCTAC 58.649 55.000 0.00 0.00 0.00 3.58
624 706 9.130312 CAATTCTTTGTAGTAGTATATCTCGGC 57.870 37.037 0.00 0.00 0.00 5.54
691 1734 1.655099 CGTGTAAATACCAACGACCCG 59.345 52.381 0.00 0.00 38.27 5.28
766 2091 4.228912 AGAAAGCAAAATTCGTCAGGTG 57.771 40.909 0.00 0.00 32.04 4.00
854 2180 4.098044 TCTGCGATGGTTCCTTTAGTCTAG 59.902 45.833 0.00 0.00 0.00 2.43
861 2187 4.615912 CGATTTTTCTGCGATGGTTCCTTT 60.616 41.667 0.00 0.00 0.00 3.11
870 2196 3.452474 CTCTCTCCGATTTTTCTGCGAT 58.548 45.455 0.00 0.00 0.00 4.58
891 2218 2.222007 TGTTGGTTGCTGTCATTTGC 57.778 45.000 0.00 0.00 0.00 3.68
913 2240 5.001232 GTCAAAGGCTACAACAAGATGGTA 58.999 41.667 0.00 0.00 0.00 3.25
938 2265 6.846325 TTTAAATTTTAAACGGGTTGGCAG 57.154 33.333 9.69 0.00 0.00 4.85
1367 2718 3.311110 GGGTGCAGAGGTCGTGGA 61.311 66.667 0.00 0.00 0.00 4.02
1518 2869 3.858868 GAACAGCGTGCCGACCAGA 62.859 63.158 0.00 0.00 0.00 3.86
1752 3103 4.136796 AGCCTTCATAGCGAATATTGCAA 58.863 39.130 0.00 0.00 31.69 4.08
1855 3206 3.690139 AGGATGTACACAGTACACTCTCG 59.310 47.826 11.74 0.00 0.00 4.04
1889 3244 4.870426 AGATGCATACGACCACTTTACTTG 59.130 41.667 0.00 0.00 0.00 3.16
1890 3245 5.086104 AGATGCATACGACCACTTTACTT 57.914 39.130 0.00 0.00 0.00 2.24
1891 3246 4.402793 AGAGATGCATACGACCACTTTACT 59.597 41.667 0.00 0.00 0.00 2.24
1892 3247 4.683832 AGAGATGCATACGACCACTTTAC 58.316 43.478 0.00 0.00 0.00 2.01
1893 3248 5.339008 AAGAGATGCATACGACCACTTTA 57.661 39.130 0.00 0.00 0.00 1.85
1894 3249 3.895232 AGAGATGCATACGACCACTTT 57.105 42.857 0.00 0.00 0.00 2.66
1895 3250 3.735208 CGAAGAGATGCATACGACCACTT 60.735 47.826 0.00 0.00 0.00 3.16
1896 3251 2.223595 CGAAGAGATGCATACGACCACT 60.224 50.000 0.00 0.00 0.00 4.00
1897 3252 2.120232 CGAAGAGATGCATACGACCAC 58.880 52.381 0.00 0.00 0.00 4.16
1898 3253 2.021457 TCGAAGAGATGCATACGACCA 58.979 47.619 0.00 0.00 0.00 4.02
1899 3254 2.776312 TCGAAGAGATGCATACGACC 57.224 50.000 0.00 0.00 0.00 4.79
1909 3264 0.392336 GGCCTCTGCATCGAAGAGAT 59.608 55.000 13.12 0.00 43.27 2.75
1910 3265 1.819229 GGCCTCTGCATCGAAGAGA 59.181 57.895 13.12 3.21 43.27 3.10
1911 3266 1.591059 CGGCCTCTGCATCGAAGAG 60.591 63.158 0.00 5.75 43.63 2.85
1912 3267 2.496341 CGGCCTCTGCATCGAAGA 59.504 61.111 0.00 0.00 45.75 2.87
1913 3268 2.587194 CCGGCCTCTGCATCGAAG 60.587 66.667 0.00 0.00 40.13 3.79
1914 3269 4.161295 CCCGGCCTCTGCATCGAA 62.161 66.667 0.00 0.00 40.13 3.71
1921 3276 3.866582 GTCATCCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
1951 3306 9.045223 GTTCTTCATGTTTTTATGGCTCTTTTT 57.955 29.630 0.00 0.00 0.00 1.94
1952 3307 8.424133 AGTTCTTCATGTTTTTATGGCTCTTTT 58.576 29.630 0.00 0.00 0.00 2.27
1953 3308 7.955918 AGTTCTTCATGTTTTTATGGCTCTTT 58.044 30.769 0.00 0.00 0.00 2.52
2142 3759 6.402222 TCCTTTTCTTAGTCTTCTGATGAGC 58.598 40.000 0.00 0.00 0.00 4.26
2212 3837 7.258441 TGAGTTAGAATTAATGGTGTCGAGAG 58.742 38.462 0.00 0.00 0.00 3.20
2226 3851 7.182817 TGCAGGTAGTACATGAGTTAGAATT 57.817 36.000 18.69 0.00 30.30 2.17
2228 3853 6.599356 TTGCAGGTAGTACATGAGTTAGAA 57.401 37.500 18.69 0.00 30.30 2.10
2229 3854 6.599356 TTTGCAGGTAGTACATGAGTTAGA 57.401 37.500 18.69 0.00 30.30 2.10
2355 3982 3.315418 GAAGTCGTACAAGGTGAACTCC 58.685 50.000 0.00 0.00 0.00 3.85
2433 4060 1.004679 GTAAACCGGACCGAAGCCA 60.005 57.895 17.49 0.00 0.00 4.75
2467 4106 6.366604 CGGTCGCATTATTACATACATGGTTA 59.633 38.462 0.00 0.00 0.00 2.85
2468 4107 5.178623 CGGTCGCATTATTACATACATGGTT 59.821 40.000 0.00 0.00 0.00 3.67
2470 4109 4.926832 TCGGTCGCATTATTACATACATGG 59.073 41.667 0.00 0.00 0.00 3.66
2471 4110 6.647212 ATCGGTCGCATTATTACATACATG 57.353 37.500 0.00 0.00 0.00 3.21
2472 4111 6.871492 TCAATCGGTCGCATTATTACATACAT 59.129 34.615 0.00 0.00 0.00 2.29
2473 4112 6.217294 TCAATCGGTCGCATTATTACATACA 58.783 36.000 0.00 0.00 0.00 2.29
2474 4113 6.699895 TCAATCGGTCGCATTATTACATAC 57.300 37.500 0.00 0.00 0.00 2.39
2475 4114 7.600752 TCAATCAATCGGTCGCATTATTACATA 59.399 33.333 0.00 0.00 0.00 2.29
2489 4128 3.643159 TCGATCGATCAATCAATCGGT 57.357 42.857 24.40 0.00 46.59 4.69
2490 4129 3.366121 CCTTCGATCGATCAATCAATCGG 59.634 47.826 24.40 10.30 46.59 4.18
2531 4185 3.883489 ACTTTCCCTGAAAAGAAACGGAG 59.117 43.478 3.56 0.00 38.30 4.63
2533 4187 4.649088 AACTTTCCCTGAAAAGAAACGG 57.351 40.909 3.56 0.00 38.30 4.44
2534 4188 6.253512 CAGAAAACTTTCCCTGAAAAGAAACG 59.746 38.462 3.56 0.00 38.30 3.60
2788 4471 9.579932 AAGAACTGAAGATGGTCTTAAGAAATT 57.420 29.630 6.78 0.00 37.17 1.82
2789 4472 9.225436 GAAGAACTGAAGATGGTCTTAAGAAAT 57.775 33.333 6.78 4.16 37.17 2.17
2858 4957 6.719370 TCCTGGTCTACATTGCAAAAAGTTAT 59.281 34.615 1.71 0.00 0.00 1.89
3169 5276 4.512944 CGCTGCATTTAGTATTCATCAGGT 59.487 41.667 0.00 0.00 0.00 4.00
3223 5368 2.103934 GCGGCACAGCACAAAACA 59.896 55.556 0.00 0.00 37.05 2.83
3424 5573 2.159627 GTGTTCCCGTTAACTCATGCAG 59.840 50.000 3.71 0.00 0.00 4.41
3438 5587 1.782028 GAAGCGTGTGGTGTGTTCCC 61.782 60.000 0.00 0.00 0.00 3.97
3439 5588 1.647084 GAAGCGTGTGGTGTGTTCC 59.353 57.895 0.00 0.00 0.00 3.62
3445 5594 3.403057 CGTCGGAAGCGTGTGGTG 61.403 66.667 0.00 0.00 0.00 4.17
3469 5625 6.774170 AGGGTTTAACCGTTTAAGAAATGTCT 59.226 34.615 8.14 0.00 39.83 3.41
3470 5626 6.973843 AGGGTTTAACCGTTTAAGAAATGTC 58.026 36.000 8.14 0.00 39.83 3.06
3471 5627 6.964807 AGGGTTTAACCGTTTAAGAAATGT 57.035 33.333 8.14 0.00 39.83 2.71
3472 5628 7.025365 GCTAGGGTTTAACCGTTTAAGAAATG 58.975 38.462 14.69 0.00 39.83 2.32
3473 5629 6.944290 AGCTAGGGTTTAACCGTTTAAGAAAT 59.056 34.615 14.69 0.00 39.83 2.17
3476 5632 5.488262 AGCTAGGGTTTAACCGTTTAAGA 57.512 39.130 14.69 0.00 39.83 2.10
3478 5634 6.298361 AGAAAGCTAGGGTTTAACCGTTTAA 58.702 36.000 14.69 0.00 39.83 1.52
3479 5635 5.868454 AGAAAGCTAGGGTTTAACCGTTTA 58.132 37.500 14.69 3.47 39.83 2.01
3480 5636 4.722220 AGAAAGCTAGGGTTTAACCGTTT 58.278 39.130 14.69 3.08 39.83 3.60
3483 5639 4.070009 ACAAGAAAGCTAGGGTTTAACCG 58.930 43.478 8.14 0.00 39.83 4.44
3484 5640 5.533528 TGAACAAGAAAGCTAGGGTTTAACC 59.466 40.000 5.40 5.40 33.25 2.85
3485 5641 6.628919 TGAACAAGAAAGCTAGGGTTTAAC 57.371 37.500 0.00 0.00 33.25 2.01
3486 5642 8.380099 TCTATGAACAAGAAAGCTAGGGTTTAA 58.620 33.333 0.00 0.00 33.25 1.52
3487 5643 7.822822 GTCTATGAACAAGAAAGCTAGGGTTTA 59.177 37.037 0.00 0.00 33.25 2.01
3508 5673 5.233689 GCCGCTCGTTTTGTATTTAGTCTAT 59.766 40.000 0.00 0.00 0.00 1.98
3602 5943 2.286872 CATGGGATTCTGCAGACAGTC 58.713 52.381 18.03 14.47 44.77 3.51
3616 6007 0.105246 AACCAAACAAGGCCATGGGA 60.105 50.000 15.13 0.00 37.26 4.37
3622 6013 3.832490 AGAAGGATTAACCAAACAAGGCC 59.168 43.478 0.00 0.00 42.04 5.19
3623 6014 4.082190 GGAGAAGGATTAACCAAACAAGGC 60.082 45.833 0.00 0.00 42.04 4.35
3624 6015 4.462834 GGGAGAAGGATTAACCAAACAAGG 59.537 45.833 0.00 0.00 42.04 3.61
3625 6016 5.076873 TGGGAGAAGGATTAACCAAACAAG 58.923 41.667 0.00 0.00 42.04 3.16
3626 6017 5.068215 TGGGAGAAGGATTAACCAAACAA 57.932 39.130 0.00 0.00 42.04 2.83
3627 6018 4.733077 TGGGAGAAGGATTAACCAAACA 57.267 40.909 0.00 0.00 42.04 2.83
3628 6019 4.462834 CCTTGGGAGAAGGATTAACCAAAC 59.537 45.833 0.00 0.00 39.81 2.93
3629 6020 4.510205 CCCTTGGGAGAAGGATTAACCAAA 60.510 45.833 0.00 0.00 39.81 3.28
3630 6021 3.011257 CCCTTGGGAGAAGGATTAACCAA 59.989 47.826 0.00 0.00 39.81 3.67
3631 6022 2.580783 CCCTTGGGAGAAGGATTAACCA 59.419 50.000 0.00 0.00 39.81 3.67
3632 6023 3.298686 CCCTTGGGAGAAGGATTAACC 57.701 52.381 0.00 0.00 39.81 2.85
3647 6038 2.511218 TCAATCCTCTCCAATCCCCTTG 59.489 50.000 0.00 0.00 34.42 3.61
3648 6039 2.863884 TCAATCCTCTCCAATCCCCTT 58.136 47.619 0.00 0.00 0.00 3.95
3649 6040 2.594536 TCAATCCTCTCCAATCCCCT 57.405 50.000 0.00 0.00 0.00 4.79
3650 6041 2.158549 CCTTCAATCCTCTCCAATCCCC 60.159 54.545 0.00 0.00 0.00 4.81
3651 6042 2.780010 TCCTTCAATCCTCTCCAATCCC 59.220 50.000 0.00 0.00 0.00 3.85
3652 6043 3.713764 TCTCCTTCAATCCTCTCCAATCC 59.286 47.826 0.00 0.00 0.00 3.01
3653 6044 5.565455 ATCTCCTTCAATCCTCTCCAATC 57.435 43.478 0.00 0.00 0.00 2.67
3654 6045 5.990713 AATCTCCTTCAATCCTCTCCAAT 57.009 39.130 0.00 0.00 0.00 3.16
3655 6046 5.786121 AAATCTCCTTCAATCCTCTCCAA 57.214 39.130 0.00 0.00 0.00 3.53
3656 6047 5.503927 CAAAATCTCCTTCAATCCTCTCCA 58.496 41.667 0.00 0.00 0.00 3.86
3657 6048 4.886489 CCAAAATCTCCTTCAATCCTCTCC 59.114 45.833 0.00 0.00 0.00 3.71
3658 6049 4.337836 GCCAAAATCTCCTTCAATCCTCTC 59.662 45.833 0.00 0.00 0.00 3.20
3659 6050 4.017683 AGCCAAAATCTCCTTCAATCCTCT 60.018 41.667 0.00 0.00 0.00 3.69
3660 6051 4.276642 AGCCAAAATCTCCTTCAATCCTC 58.723 43.478 0.00 0.00 0.00 3.71
3661 6052 4.328118 AGCCAAAATCTCCTTCAATCCT 57.672 40.909 0.00 0.00 0.00 3.24
3662 6053 4.752146 CAAGCCAAAATCTCCTTCAATCC 58.248 43.478 0.00 0.00 0.00 3.01
3663 6054 4.179298 GCAAGCCAAAATCTCCTTCAATC 58.821 43.478 0.00 0.00 0.00 2.67
3664 6055 3.579586 TGCAAGCCAAAATCTCCTTCAAT 59.420 39.130 0.00 0.00 0.00 2.57
3665 6056 2.964464 TGCAAGCCAAAATCTCCTTCAA 59.036 40.909 0.00 0.00 0.00 2.69
3666 6057 2.559668 CTGCAAGCCAAAATCTCCTTCA 59.440 45.455 0.00 0.00 0.00 3.02
3667 6058 2.094338 CCTGCAAGCCAAAATCTCCTTC 60.094 50.000 0.00 0.00 0.00 3.46
3668 6059 1.897802 CCTGCAAGCCAAAATCTCCTT 59.102 47.619 0.00 0.00 0.00 3.36
3669 6060 1.553706 CCTGCAAGCCAAAATCTCCT 58.446 50.000 0.00 0.00 0.00 3.69
3670 6061 0.533951 CCCTGCAAGCCAAAATCTCC 59.466 55.000 0.00 0.00 0.00 3.71
3671 6062 0.533951 CCCCTGCAAGCCAAAATCTC 59.466 55.000 0.00 0.00 0.00 2.75
3672 6063 0.114954 TCCCCTGCAAGCCAAAATCT 59.885 50.000 0.00 0.00 0.00 2.40
3673 6064 1.197812 ATCCCCTGCAAGCCAAAATC 58.802 50.000 0.00 0.00 0.00 2.17
3674 6065 1.660242 AATCCCCTGCAAGCCAAAAT 58.340 45.000 0.00 0.00 0.00 1.82
3675 6066 1.433121 AAATCCCCTGCAAGCCAAAA 58.567 45.000 0.00 0.00 0.00 2.44
3676 6067 2.317371 TAAATCCCCTGCAAGCCAAA 57.683 45.000 0.00 0.00 0.00 3.28
3677 6068 2.317371 TTAAATCCCCTGCAAGCCAA 57.683 45.000 0.00 0.00 0.00 4.52
3678 6069 2.387757 GATTAAATCCCCTGCAAGCCA 58.612 47.619 0.00 0.00 0.00 4.75
3679 6070 1.688735 GGATTAAATCCCCTGCAAGCC 59.311 52.381 0.00 0.00 43.88 4.35
3690 6081 4.279420 GCAGGGATTGAGGTGGATTAAATC 59.721 45.833 0.00 0.00 0.00 2.17
3691 6082 4.218312 GCAGGGATTGAGGTGGATTAAAT 58.782 43.478 0.00 0.00 0.00 1.40
3692 6083 3.627237 GGCAGGGATTGAGGTGGATTAAA 60.627 47.826 0.00 0.00 0.00 1.52
3693 6084 2.091885 GGCAGGGATTGAGGTGGATTAA 60.092 50.000 0.00 0.00 0.00 1.40
3694 6085 1.494721 GGCAGGGATTGAGGTGGATTA 59.505 52.381 0.00 0.00 0.00 1.75
3695 6086 0.259938 GGCAGGGATTGAGGTGGATT 59.740 55.000 0.00 0.00 0.00 3.01
3696 6087 0.920763 TGGCAGGGATTGAGGTGGAT 60.921 55.000 0.00 0.00 0.00 3.41
3697 6088 1.139498 TTGGCAGGGATTGAGGTGGA 61.139 55.000 0.00 0.00 0.00 4.02
3698 6089 0.032813 ATTGGCAGGGATTGAGGTGG 60.033 55.000 0.00 0.00 0.00 4.61
3699 6090 1.396653 GATTGGCAGGGATTGAGGTG 58.603 55.000 0.00 0.00 0.00 4.00
3700 6091 0.259938 GGATTGGCAGGGATTGAGGT 59.740 55.000 0.00 0.00 0.00 3.85
3701 6092 0.468771 GGGATTGGCAGGGATTGAGG 60.469 60.000 0.00 0.00 0.00 3.86
3702 6093 0.468771 GGGGATTGGCAGGGATTGAG 60.469 60.000 0.00 0.00 0.00 3.02
3703 6094 0.925720 AGGGGATTGGCAGGGATTGA 60.926 55.000 0.00 0.00 0.00 2.57
3704 6095 0.031817 AAGGGGATTGGCAGGGATTG 60.032 55.000 0.00 0.00 0.00 2.67
3705 6096 0.262876 GAAGGGGATTGGCAGGGATT 59.737 55.000 0.00 0.00 0.00 3.01
3706 6097 0.925720 TGAAGGGGATTGGCAGGGAT 60.926 55.000 0.00 0.00 0.00 3.85
3707 6098 1.145900 TTGAAGGGGATTGGCAGGGA 61.146 55.000 0.00 0.00 0.00 4.20
3708 6099 0.252193 TTTGAAGGGGATTGGCAGGG 60.252 55.000 0.00 0.00 0.00 4.45
3709 6100 1.758862 GATTTGAAGGGGATTGGCAGG 59.241 52.381 0.00 0.00 0.00 4.85
3710 6101 1.758862 GGATTTGAAGGGGATTGGCAG 59.241 52.381 0.00 0.00 0.00 4.85
3711 6102 1.078490 TGGATTTGAAGGGGATTGGCA 59.922 47.619 0.00 0.00 0.00 4.92
3712 6103 1.482182 GTGGATTTGAAGGGGATTGGC 59.518 52.381 0.00 0.00 0.00 4.52
3713 6104 2.110578 GGTGGATTTGAAGGGGATTGG 58.889 52.381 0.00 0.00 0.00 3.16
3714 6105 3.026694 GAGGTGGATTTGAAGGGGATTG 58.973 50.000 0.00 0.00 0.00 2.67
3715 6106 2.654385 TGAGGTGGATTTGAAGGGGATT 59.346 45.455 0.00 0.00 0.00 3.01
3716 6107 2.287584 TGAGGTGGATTTGAAGGGGAT 58.712 47.619 0.00 0.00 0.00 3.85
3717 6108 1.753903 TGAGGTGGATTTGAAGGGGA 58.246 50.000 0.00 0.00 0.00 4.81
3718 6109 2.562738 GTTTGAGGTGGATTTGAAGGGG 59.437 50.000 0.00 0.00 0.00 4.79
3719 6110 2.562738 GGTTTGAGGTGGATTTGAAGGG 59.437 50.000 0.00 0.00 0.00 3.95
3720 6111 2.228822 CGGTTTGAGGTGGATTTGAAGG 59.771 50.000 0.00 0.00 0.00 3.46
3721 6112 3.146066 TCGGTTTGAGGTGGATTTGAAG 58.854 45.455 0.00 0.00 0.00 3.02
3722 6113 3.216187 TCGGTTTGAGGTGGATTTGAA 57.784 42.857 0.00 0.00 0.00 2.69
3723 6114 2.882137 GTTCGGTTTGAGGTGGATTTGA 59.118 45.455 0.00 0.00 0.00 2.69
3724 6115 2.621055 TGTTCGGTTTGAGGTGGATTTG 59.379 45.455 0.00 0.00 0.00 2.32
3725 6116 2.938838 TGTTCGGTTTGAGGTGGATTT 58.061 42.857 0.00 0.00 0.00 2.17
3726 6117 2.649531 TGTTCGGTTTGAGGTGGATT 57.350 45.000 0.00 0.00 0.00 3.01
3727 6118 2.649531 TTGTTCGGTTTGAGGTGGAT 57.350 45.000 0.00 0.00 0.00 3.41
3728 6119 2.294074 CTTTGTTCGGTTTGAGGTGGA 58.706 47.619 0.00 0.00 0.00 4.02
3729 6120 1.269051 GCTTTGTTCGGTTTGAGGTGG 60.269 52.381 0.00 0.00 0.00 4.61
3730 6121 1.269051 GGCTTTGTTCGGTTTGAGGTG 60.269 52.381 0.00 0.00 0.00 4.00
3731 6122 1.029681 GGCTTTGTTCGGTTTGAGGT 58.970 50.000 0.00 0.00 0.00 3.85
3732 6123 1.318576 AGGCTTTGTTCGGTTTGAGG 58.681 50.000 0.00 0.00 0.00 3.86
3733 6124 4.036380 AGTTAAGGCTTTGTTCGGTTTGAG 59.964 41.667 4.45 0.00 0.00 3.02
3734 6125 3.949113 AGTTAAGGCTTTGTTCGGTTTGA 59.051 39.130 4.45 0.00 0.00 2.69
3735 6126 4.301637 AGTTAAGGCTTTGTTCGGTTTG 57.698 40.909 4.45 0.00 0.00 2.93
3736 6127 6.040054 ACATTAGTTAAGGCTTTGTTCGGTTT 59.960 34.615 4.45 0.00 0.00 3.27
3737 6128 5.533528 ACATTAGTTAAGGCTTTGTTCGGTT 59.466 36.000 4.45 0.00 0.00 4.44
3738 6129 5.048991 CACATTAGTTAAGGCTTTGTTCGGT 60.049 40.000 4.45 0.00 0.00 4.69
3739 6130 5.390613 CACATTAGTTAAGGCTTTGTTCGG 58.609 41.667 4.45 0.00 0.00 4.30
3740 6131 4.851558 GCACATTAGTTAAGGCTTTGTTCG 59.148 41.667 4.45 0.00 0.00 3.95
3741 6132 5.161358 GGCACATTAGTTAAGGCTTTGTTC 58.839 41.667 4.45 0.00 0.00 3.18
3742 6133 4.320935 CGGCACATTAGTTAAGGCTTTGTT 60.321 41.667 4.45 0.00 0.00 2.83
3743 6134 3.190535 CGGCACATTAGTTAAGGCTTTGT 59.809 43.478 4.45 0.00 0.00 2.83
3744 6135 3.190535 ACGGCACATTAGTTAAGGCTTTG 59.809 43.478 4.45 0.00 0.00 2.77
3745 6136 3.190535 CACGGCACATTAGTTAAGGCTTT 59.809 43.478 4.45 0.00 0.00 3.51
3746 6137 2.747446 CACGGCACATTAGTTAAGGCTT 59.253 45.455 4.58 4.58 0.00 4.35
3747 6138 2.290071 ACACGGCACATTAGTTAAGGCT 60.290 45.455 0.00 0.00 0.00 4.58
3748 6139 2.081462 ACACGGCACATTAGTTAAGGC 58.919 47.619 0.00 0.00 0.00 4.35
3749 6140 5.815740 AGATTACACGGCACATTAGTTAAGG 59.184 40.000 0.00 0.00 0.00 2.69
3750 6141 6.903883 AGATTACACGGCACATTAGTTAAG 57.096 37.500 0.00 0.00 0.00 1.85
3755 6146 4.793216 GCAAAAGATTACACGGCACATTAG 59.207 41.667 0.00 0.00 0.00 1.73
3763 6154 3.915437 ACAAGGCAAAAGATTACACGG 57.085 42.857 0.00 0.00 0.00 4.94
3793 6184 4.846779 ATCACACGGCACATTAGTTTTT 57.153 36.364 0.00 0.00 0.00 1.94
3794 6185 4.846779 AATCACACGGCACATTAGTTTT 57.153 36.364 0.00 0.00 0.00 2.43
3795 6186 4.846779 AAATCACACGGCACATTAGTTT 57.153 36.364 0.00 0.00 0.00 2.66
3810 6202 1.606668 TGCCTGTCGTCCAAAAATCAC 59.393 47.619 0.00 0.00 0.00 3.06
4191 6586 1.227263 ACACACGTGGCTCACTCAC 60.227 57.895 21.57 0.00 34.19 3.51
4225 6631 1.742880 CCGTCTGCCTGTCCACATG 60.743 63.158 0.00 0.00 0.00 3.21
4230 6636 2.105128 CGATCCGTCTGCCTGTCC 59.895 66.667 0.00 0.00 0.00 4.02
4246 6652 3.000727 GGAAACATCTCAACCCTACACG 58.999 50.000 0.00 0.00 0.00 4.49
4277 6683 1.828660 CGATCCCAGTAGGCCGAGT 60.829 63.158 0.00 0.00 34.57 4.18
4279 6685 3.224324 GCGATCCCAGTAGGCCGA 61.224 66.667 0.00 0.00 34.57 5.54
4281 6687 2.737830 GAGCGATCCCAGTAGGCC 59.262 66.667 0.00 0.00 34.51 5.19
4283 6689 1.360551 CACGAGCGATCCCAGTAGG 59.639 63.158 0.00 0.00 0.00 3.18
4286 6692 1.977009 TGACACGAGCGATCCCAGT 60.977 57.895 0.00 0.00 0.00 4.00
4290 6696 2.579787 CCGTGACACGAGCGATCC 60.580 66.667 28.83 0.00 46.05 3.36
4291 6697 2.152699 CACCGTGACACGAGCGATC 61.153 63.158 28.83 0.00 46.05 3.69
4292 6698 2.126463 CACCGTGACACGAGCGAT 60.126 61.111 28.83 6.23 46.05 4.58
4345 6751 2.317530 AGGTTTCCTCTTGCGCTATC 57.682 50.000 9.73 0.00 0.00 2.08
4351 6757 8.747538 TCCTATAATTTTAGGTTTCCTCTTGC 57.252 34.615 18.18 0.00 39.87 4.01
4371 6777 5.706369 CCAGCAGTATAGTTCGTACTCCTAT 59.294 44.000 0.00 0.00 35.78 2.57
4374 6780 3.550436 GCCAGCAGTATAGTTCGTACTCC 60.550 52.174 0.00 0.00 35.78 3.85
4375 6781 3.066342 TGCCAGCAGTATAGTTCGTACTC 59.934 47.826 0.00 0.00 35.78 2.59
4376 6782 3.021695 TGCCAGCAGTATAGTTCGTACT 58.978 45.455 0.00 0.00 38.44 2.73
4435 6842 5.039984 GCATCCTGTCTATATCATGTAGCG 58.960 45.833 0.00 0.00 0.00 4.26
4483 6890 6.096673 TCACATCTGTTACTGTAAGAGCAA 57.903 37.500 17.25 4.61 37.43 3.91
4484 6891 5.243954 ACTCACATCTGTTACTGTAAGAGCA 59.756 40.000 17.25 8.83 37.43 4.26
4485 6892 5.574830 CACTCACATCTGTTACTGTAAGAGC 59.425 44.000 17.25 0.62 37.43 4.09
4486 6893 6.682746 ACACTCACATCTGTTACTGTAAGAG 58.317 40.000 16.25 16.25 37.43 2.85
4487 6894 6.650427 ACACTCACATCTGTTACTGTAAGA 57.350 37.500 0.00 0.00 37.43 2.10
4490 6897 6.008331 ACCTACACTCACATCTGTTACTGTA 58.992 40.000 0.00 0.00 0.00 2.74
4500 6907 2.751166 AGCACACCTACACTCACATC 57.249 50.000 0.00 0.00 0.00 3.06
4508 6915 1.520192 CCGGCATAGCACACCTACA 59.480 57.895 0.00 0.00 0.00 2.74
4518 6925 0.739462 TTGACTTGTCGCCGGCATAG 60.739 55.000 28.98 18.68 0.00 2.23
4560 6968 5.825593 ACTTCCAAAGTCAAGAGACCATA 57.174 39.130 0.00 0.00 46.15 2.74
4613 7028 7.547722 GGGAAAACACAAACAATACCCATATTC 59.452 37.037 0.00 0.00 35.41 1.75
4634 7053 3.691575 TGACACAAGAACACAAGGGAAA 58.308 40.909 0.00 0.00 0.00 3.13
4640 7059 7.994425 ATTATGGTATGACACAAGAACACAA 57.006 32.000 0.00 0.00 0.00 3.33
4879 7574 7.370383 TCTTTTGCTAATTTTCAGTTGCCTAG 58.630 34.615 0.00 0.00 0.00 3.02
4907 7602 8.391106 CACTAATCAGGTGTGTATCTTTTTAGC 58.609 37.037 0.00 0.00 0.00 3.09
4951 7647 4.994852 TGGGTTTTCTTCGTATGAGAACTG 59.005 41.667 0.00 0.00 31.72 3.16
5112 12849 5.178996 GTGTTAATCATGGCTGCTCTATCTG 59.821 44.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.