Multiple sequence alignment - TraesCS2D01G222100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G222100 chr2D 100.000 8718 0 0 1 8718 189377800 189369083 0.000000e+00 16100.0
1 TraesCS2D01G222100 chr2D 90.119 2186 180 28 4186 6360 382184314 382182154 0.000000e+00 2808.0
2 TraesCS2D01G222100 chr2D 97.110 173 5 0 6275 6447 189373985 189373813 8.560000e-75 292.0
3 TraesCS2D01G222100 chr2D 94.220 173 9 1 6276 6447 347796683 347796511 6.710000e-66 263.0
4 TraesCS2D01G222100 chr7D 90.328 2595 210 34 3817 6390 4651656 4649082 0.000000e+00 3363.0
5 TraesCS2D01G222100 chr7D 80.104 960 110 31 2840 3754 47109934 47110857 2.650000e-179 640.0
6 TraesCS2D01G222100 chr7D 87.103 504 51 11 3812 4302 327401870 327402372 7.640000e-155 558.0
7 TraesCS2D01G222100 chr7D 86.250 480 54 10 3812 4285 37551727 37552200 2.170000e-140 510.0
8 TraesCS2D01G222100 chr7D 85.872 453 60 4 3857 4305 337562899 337562447 6.120000e-131 479.0
9 TraesCS2D01G222100 chr7D 78.704 540 65 24 2843 3372 17214033 17213534 1.830000e-81 315.0
10 TraesCS2D01G222100 chr7D 89.268 205 20 2 7735 7937 388997190 388996986 1.120000e-63 255.0
11 TraesCS2D01G222100 chr7D 86.614 127 17 0 3620 3746 17213115 17212989 3.280000e-29 141.0
12 TraesCS2D01G222100 chr6D 90.342 2599 189 44 3817 6390 49841289 49838728 0.000000e+00 3352.0
13 TraesCS2D01G222100 chr6D 88.845 2268 202 38 4108 6360 293606391 293608622 0.000000e+00 2739.0
14 TraesCS2D01G222100 chr6D 87.245 980 100 15 3816 4790 164817587 164818546 0.000000e+00 1094.0
15 TraesCS2D01G222100 chr6D 86.224 980 106 16 3815 4786 164815412 164816370 0.000000e+00 1035.0
16 TraesCS2D01G222100 chr6D 87.413 286 19 9 3817 4089 155248953 155249234 6.570000e-81 313.0
17 TraesCS2D01G222100 chr6D 95.946 148 6 0 3841 3988 56664450 56664303 3.140000e-59 241.0
18 TraesCS2D01G222100 chr6D 92.308 169 8 5 3816 3980 164820858 164821025 1.460000e-57 235.0
19 TraesCS2D01G222100 chr6D 89.714 175 13 3 3816 3989 123057182 123057012 1.470000e-52 219.0
20 TraesCS2D01G222100 chr6D 88.281 128 15 0 2843 2970 409753198 409753071 4.210000e-33 154.0
21 TraesCS2D01G222100 chr6D 96.774 93 1 1 6464 6556 431311850 431311760 4.210000e-33 154.0
22 TraesCS2D01G222100 chr6D 96.154 52 2 0 3755 3806 385916955 385917006 1.560000e-12 86.1
23 TraesCS2D01G222100 chr6D 96.154 52 2 0 3755 3806 441898366 441898315 1.560000e-12 86.1
24 TraesCS2D01G222100 chr6B 87.529 2582 281 29 3817 6379 10379440 10381999 0.000000e+00 2946.0
25 TraesCS2D01G222100 chr6B 89.404 2265 203 32 4108 6356 674359648 674361891 0.000000e+00 2819.0
26 TraesCS2D01G222100 chr3D 90.231 2252 181 31 4121 6359 12218472 12216247 0.000000e+00 2904.0
27 TraesCS2D01G222100 chr3D 89.041 2263 209 29 4108 6356 317304 315067 0.000000e+00 2769.0
28 TraesCS2D01G222100 chr3D 88.550 917 39 23 2852 3755 506003231 506004094 0.000000e+00 1051.0
29 TraesCS2D01G222100 chr3D 86.088 611 74 6 30 636 61696865 61696262 0.000000e+00 647.0
30 TraesCS2D01G222100 chr3D 92.486 173 11 2 6276 6447 537634341 537634170 6.760000e-61 246.0
31 TraesCS2D01G222100 chr1D 89.671 2188 186 30 4158 6332 418311837 418309677 0.000000e+00 2752.0
32 TraesCS2D01G222100 chr1D 96.377 138 5 0 3841 3978 89042930 89042793 2.450000e-55 228.0
33 TraesCS2D01G222100 chr1D 90.805 174 10 6 3814 3985 456663537 456663706 2.450000e-55 228.0
34 TraesCS2D01G222100 chr1D 96.154 52 2 0 3755 3806 345281734 345281683 1.560000e-12 86.1
35 TraesCS2D01G222100 chr1D 96.226 53 0 2 3755 3806 389214574 389214625 1.560000e-12 86.1
36 TraesCS2D01G222100 chr1D 94.231 52 3 0 3755 3806 10816223 10816172 7.260000e-11 80.5
37 TraesCS2D01G222100 chr2B 90.918 1938 139 23 6754 8666 245687790 245685865 0.000000e+00 2569.0
38 TraesCS2D01G222100 chr2B 91.582 1770 82 29 993 2723 245691725 245689984 0.000000e+00 2381.0
39 TraesCS2D01G222100 chr2B 90.951 1072 44 16 1 1056 245785122 245784088 0.000000e+00 1393.0
40 TraesCS2D01G222100 chr2B 86.918 1009 101 21 3817 4818 214693870 214692886 0.000000e+00 1103.0
41 TraesCS2D01G222100 chr2B 92.857 154 11 0 845 998 245691906 245691753 3.170000e-54 224.0
42 TraesCS2D01G222100 chr2B 94.118 136 7 1 6571 6705 245687923 245687788 1.150000e-48 206.0
43 TraesCS2D01G222100 chr2B 95.876 97 1 2 6464 6558 206371184 206371279 4.210000e-33 154.0
44 TraesCS2D01G222100 chr2B 95.833 96 1 2 6464 6557 206371277 206371183 1.520000e-32 152.0
45 TraesCS2D01G222100 chr2B 85.926 135 8 6 6448 6572 6316525 6316392 5.490000e-27 134.0
46 TraesCS2D01G222100 chr2B 96.104 77 3 0 2720 2796 245689718 245689642 9.190000e-25 126.0
47 TraesCS2D01G222100 chr2B 89.423 104 5 2 1043 1140 245773339 245773236 9.190000e-25 126.0
48 TraesCS2D01G222100 chr2B 76.000 200 28 13 1541 1736 245319876 245319693 1.560000e-12 86.1
49 TraesCS2D01G222100 chr1B 82.366 2620 325 73 3853 6437 457326864 457329381 0.000000e+00 2152.0
50 TraesCS2D01G222100 chr1B 93.778 225 14 0 2876 3100 662820843 662820619 1.080000e-88 339.0
51 TraesCS2D01G222100 chr1B 92.478 226 15 1 3852 4077 457329255 457329478 1.090000e-83 322.0
52 TraesCS2D01G222100 chr1B 89.109 202 18 4 3817 4017 424175938 424175740 1.880000e-61 248.0
53 TraesCS2D01G222100 chr1B 91.525 177 13 2 3816 3992 424173650 424173476 8.740000e-60 243.0
54 TraesCS2D01G222100 chr1B 95.620 137 6 0 3568 3704 662820618 662820482 4.100000e-53 220.0
55 TraesCS2D01G222100 chr1B 78.551 345 35 16 3441 3755 430099901 430100236 3.210000e-44 191.0
56 TraesCS2D01G222100 chr2A 92.333 1200 78 6 6730 7927 203281017 203279830 0.000000e+00 1694.0
57 TraesCS2D01G222100 chr2A 91.105 697 49 4 1 696 203298237 203297553 0.000000e+00 931.0
58 TraesCS2D01G222100 chr2A 87.546 811 59 25 1398 2193 203288448 203287665 0.000000e+00 900.0
59 TraesCS2D01G222100 chr2A 86.536 817 87 14 7921 8718 203265549 203264737 0.000000e+00 878.0
60 TraesCS2D01G222100 chr2A 91.026 390 29 3 2331 2718 203281974 203281589 1.000000e-143 521.0
61 TraesCS2D01G222100 chr2A 88.319 351 25 6 999 1348 203297561 203297226 2.930000e-109 407.0
62 TraesCS2D01G222100 chr2A 83.537 328 36 12 2843 3158 48551795 48552116 3.080000e-74 291.0
63 TraesCS2D01G222100 chr2A 93.413 167 9 2 6571 6736 203281358 203281193 6.760000e-61 246.0
64 TraesCS2D01G222100 chr2A 99.048 105 1 0 2719 2823 203281460 203281356 1.160000e-43 189.0
65 TraesCS2D01G222100 chr2A 90.977 133 11 1 3621 3753 769557994 769558125 2.500000e-40 178.0
66 TraesCS2D01G222100 chr2A 75.500 200 29 13 1541 1736 203257594 203257411 7.260000e-11 80.5
67 TraesCS2D01G222100 chr2A 83.333 78 9 3 1800 1875 203257350 203257275 1.570000e-07 69.4
68 TraesCS2D01G222100 chr4A 86.356 1268 135 22 3827 5087 743788852 743787616 0.000000e+00 1349.0
69 TraesCS2D01G222100 chr4A 92.649 925 47 7 2851 3754 7163353 7162429 0.000000e+00 1312.0
70 TraesCS2D01G222100 chr4A 83.768 345 34 11 2851 3191 632784243 632783917 3.060000e-79 307.0
71 TraesCS2D01G222100 chr4A 80.092 437 42 18 3349 3752 632765884 632765460 5.150000e-72 283.0
72 TraesCS2D01G222100 chr4A 77.778 531 64 28 2842 3358 607239998 607239508 2.400000e-70 278.0
73 TraesCS2D01G222100 chr4B 93.239 917 56 5 2841 3754 75037343 75036430 0.000000e+00 1345.0
74 TraesCS2D01G222100 chr4B 80.315 381 43 7 3404 3754 466641514 466641892 8.680000e-65 259.0
75 TraesCS2D01G222100 chr4B 98.077 52 1 0 3755 3806 171114566 171114617 3.350000e-14 91.6
76 TraesCS2D01G222100 chr4B 96.154 52 2 0 3755 3806 29271852 29271903 1.560000e-12 86.1
77 TraesCS2D01G222100 chr5D 83.448 1305 156 26 3817 5115 255474699 255473449 0.000000e+00 1158.0
78 TraesCS2D01G222100 chr5D 87.118 458 48 10 3854 4302 558714917 558714462 7.810000e-140 508.0
79 TraesCS2D01G222100 chr5D 87.576 330 17 7 6788 7108 510919427 510919741 2.310000e-95 361.0
80 TraesCS2D01G222100 chr5D 83.784 333 31 16 2843 3161 548627596 548627273 2.380000e-75 294.0
81 TraesCS2D01G222100 chr5D 97.110 173 4 1 6276 6447 486817679 486817507 3.080000e-74 291.0
82 TraesCS2D01G222100 chr5D 96.067 178 5 2 3816 3991 486815256 486815079 1.110000e-73 289.0
83 TraesCS2D01G222100 chr5D 81.769 373 36 16 3404 3746 46615815 46615445 5.150000e-72 283.0
84 TraesCS2D01G222100 chr5D 77.820 532 63 25 2843 3372 46616394 46615916 2.400000e-70 278.0
85 TraesCS2D01G222100 chr5D 95.376 173 7 1 6276 6447 1550577 1550405 3.100000e-69 274.0
86 TraesCS2D01G222100 chr5D 90.374 187 9 3 2264 2445 510919122 510919304 4.070000e-58 237.0
87 TraesCS2D01G222100 chr5D 88.421 190 13 5 7380 7560 510919881 510920070 4.100000e-53 220.0
88 TraesCS2D01G222100 chr5D 93.617 141 6 1 7140 7277 510919743 510919883 3.190000e-49 207.0
89 TraesCS2D01G222100 chr5D 90.511 137 11 2 3621 3756 548626775 548626640 6.950000e-41 180.0
90 TraesCS2D01G222100 chr5D 88.722 133 5 7 6448 6573 395728095 395728224 4.210000e-33 154.0
91 TraesCS2D01G222100 chrUn 86.282 1006 111 20 3817 4804 105630120 105631116 0.000000e+00 1068.0
92 TraesCS2D01G222100 chrUn 86.864 708 77 12 3817 4514 404904894 404904193 0.000000e+00 778.0
93 TraesCS2D01G222100 chrUn 86.864 708 77 13 3817 4514 404906382 404905681 0.000000e+00 778.0
94 TraesCS2D01G222100 chrUn 89.278 457 33 13 3814 4260 385927411 385926961 7.640000e-155 558.0
95 TraesCS2D01G222100 chrUn 94.000 100 5 1 3816 3914 41914582 41914681 5.450000e-32 150.0
96 TraesCS2D01G222100 chrUn 94.000 100 5 1 3816 3915 370562721 370562623 5.450000e-32 150.0
97 TraesCS2D01G222100 chrUn 94.000 100 5 1 3816 3915 370568158 370568256 5.450000e-32 150.0
98 TraesCS2D01G222100 chrUn 94.000 100 5 1 3816 3915 473314381 473314283 5.450000e-32 150.0
99 TraesCS2D01G222100 chrUn 90.000 120 4 8 3816 3931 293898311 293898196 1.960000e-31 148.0
100 TraesCS2D01G222100 chrUn 92.381 105 7 1 3817 3920 466074820 466074716 1.960000e-31 148.0
101 TraesCS2D01G222100 chrUn 83.140 172 16 7 3816 3986 132222551 132222392 2.540000e-30 145.0
102 TraesCS2D01G222100 chrUn 94.231 52 3 0 3755 3806 36436905 36436956 7.260000e-11 80.5
103 TraesCS2D01G222100 chrUn 94.231 52 3 0 3755 3806 371558119 371558068 7.260000e-11 80.5
104 TraesCS2D01G222100 chrUn 94.231 52 3 0 3755 3806 371616926 371616875 7.260000e-11 80.5
105 TraesCS2D01G222100 chrUn 94.000 50 3 0 3757 3806 319198412 319198461 9.390000e-10 76.8
106 TraesCS2D01G222100 chrUn 94.000 50 3 0 3757 3806 347747213 347747262 9.390000e-10 76.8
107 TraesCS2D01G222100 chrUn 92.308 52 4 0 3755 3806 16341813 16341762 3.380000e-09 75.0
108 TraesCS2D01G222100 chrUn 92.308 52 4 0 3755 3806 335557663 335557714 3.380000e-09 75.0
109 TraesCS2D01G222100 chrUn 90.909 55 2 1 3755 3806 88050315 88050369 4.370000e-08 71.3
110 TraesCS2D01G222100 chrUn 91.837 49 4 0 3758 3806 29813984 29814032 1.570000e-07 69.4
111 TraesCS2D01G222100 chr1A 90.673 654 43 6 2843 3479 557994559 557993907 0.000000e+00 854.0
112 TraesCS2D01G222100 chr1A 94.306 281 10 2 3483 3758 557993597 557993318 8.090000e-115 425.0
113 TraesCS2D01G222100 chr1A 96.154 52 2 0 3755 3806 69995899 69995950 1.560000e-12 86.1
114 TraesCS2D01G222100 chr4D 88.576 674 60 12 3817 4484 93072440 93073102 0.000000e+00 802.0
115 TraesCS2D01G222100 chr4D 90.438 502 34 10 3817 4307 95828768 95828270 0.000000e+00 649.0
116 TraesCS2D01G222100 chr4D 94.460 361 19 1 2980 3340 93072435 93072076 9.890000e-154 555.0
117 TraesCS2D01G222100 chr4D 81.579 266 32 9 3854 4116 9071829 9072080 4.130000e-48 204.0
118 TraesCS2D01G222100 chr4D 94.030 134 7 1 2843 2976 93075547 93075415 1.480000e-47 202.0
119 TraesCS2D01G222100 chr4D 93.220 118 5 2 3816 3931 95827909 95827793 4.180000e-38 171.0
120 TraesCS2D01G222100 chr4D 91.270 126 7 3 3816 3937 93075253 93075378 1.510000e-37 169.0
121 TraesCS2D01G222100 chr4D 91.597 119 7 3 3816 3931 34655429 34655547 2.520000e-35 161.0
122 TraesCS2D01G222100 chr4D 89.062 128 4 8 6448 6572 116821895 116822015 5.450000e-32 150.0
123 TraesCS2D01G222100 chr4D 93.750 80 5 0 2843 2922 127565395 127565316 4.270000e-23 121.0
124 TraesCS2D01G222100 chr4D 94.203 69 4 0 3367 3435 93072075 93072007 1.200000e-18 106.0
125 TraesCS2D01G222100 chr4D 96.154 52 2 0 3755 3806 14928741 14928690 1.560000e-12 86.1
126 TraesCS2D01G222100 chr5A 86.495 659 79 10 3817 4471 11230727 11231379 0.000000e+00 715.0
127 TraesCS2D01G222100 chr5A 86.593 455 36 9 6832 7277 639188808 639189246 6.120000e-131 479.0
128 TraesCS2D01G222100 chr5A 84.000 250 21 10 7463 7706 639189423 639189659 1.140000e-53 222.0
129 TraesCS2D01G222100 chr5A 85.514 214 9 7 2363 2575 639188521 639188713 4.130000e-48 204.0
130 TraesCS2D01G222100 chr5A 73.978 538 109 26 24 547 546239535 546239015 1.160000e-43 189.0
131 TraesCS2D01G222100 chr5A 74.833 449 91 13 2222 2656 546307757 546307317 5.380000e-42 183.0
132 TraesCS2D01G222100 chr5A 74.554 448 85 19 32 464 546237531 546237964 1.510000e-37 169.0
133 TraesCS2D01G222100 chr7A 90.090 444 40 4 3857 4296 327915793 327915350 2.730000e-159 573.0
134 TraesCS2D01G222100 chr7A 89.268 205 20 2 7735 7937 439633027 439632823 1.120000e-63 255.0
135 TraesCS2D01G222100 chr7A 100.000 29 0 0 2814 2842 461522578 461522606 4.000000e-03 54.7
136 TraesCS2D01G222100 chr7B 87.276 503 50 11 3812 4302 364212481 364212981 5.910000e-156 562.0
137 TraesCS2D01G222100 chr7B 87.805 205 23 2 7735 7937 384200836 384200632 1.130000e-58 239.0
138 TraesCS2D01G222100 chr7B 87.597 129 12 1 6448 6572 750049397 750049269 7.050000e-31 147.0
139 TraesCS2D01G222100 chr7B 88.421 95 11 0 3662 3756 215968651 215968557 1.990000e-21 115.0
140 TraesCS2D01G222100 chr3A 83.580 609 72 15 30 634 70721734 70721150 5.950000e-151 545.0
141 TraesCS2D01G222100 chr3A 94.253 174 8 2 6276 6447 716397928 716397755 1.870000e-66 265.0
142 TraesCS2D01G222100 chr5B 84.521 491 62 8 3817 4302 704140753 704141234 2.850000e-129 473.0
143 TraesCS2D01G222100 chr5B 84.454 476 61 13 3815 4285 696086968 696087435 2.870000e-124 457.0
144 TraesCS2D01G222100 chr5B 84.195 329 35 13 2839 3158 513852852 513853172 3.950000e-78 303.0
145 TraesCS2D01G222100 chr5B 84.262 305 14 11 2296 2600 641928915 641929185 5.190000e-67 267.0
146 TraesCS2D01G222100 chr5B 85.946 185 11 6 7079 7250 641929373 641929555 5.380000e-42 183.0
147 TraesCS2D01G222100 chr5B 97.333 75 2 0 2324 2398 642262696 642262770 2.550000e-25 128.0
148 TraesCS2D01G222100 chr5B 92.941 85 6 0 2488 2572 642262809 642262893 3.300000e-24 124.0
149 TraesCS2D01G222100 chr5B 100.000 29 0 0 3727 3755 377838379 377838351 4.000000e-03 54.7
150 TraesCS2D01G222100 chr3B 80.052 386 40 11 3404 3754 30445869 30445486 1.450000e-62 252.0
151 TraesCS2D01G222100 chr3B 95.192 104 2 3 6455 6557 187150391 187150492 2.520000e-35 161.0
152 TraesCS2D01G222100 chr3B 94.175 103 4 2 6464 6566 187150491 187150391 1.170000e-33 156.0
153 TraesCS2D01G222100 chr6A 96.154 52 2 0 3755 3806 558041336 558041285 1.560000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G222100 chr2D 189369083 189377800 8717 True 8196.000000 16100 98.555000 1 8718 2 chr2D.!!$R3 8717
1 TraesCS2D01G222100 chr2D 382182154 382184314 2160 True 2808.000000 2808 90.119000 4186 6360 1 chr2D.!!$R2 2174
2 TraesCS2D01G222100 chr7D 4649082 4651656 2574 True 3363.000000 3363 90.328000 3817 6390 1 chr7D.!!$R1 2573
3 TraesCS2D01G222100 chr7D 47109934 47110857 923 False 640.000000 640 80.104000 2840 3754 1 chr7D.!!$F2 914
4 TraesCS2D01G222100 chr7D 327401870 327402372 502 False 558.000000 558 87.103000 3812 4302 1 chr7D.!!$F3 490
5 TraesCS2D01G222100 chr7D 17212989 17214033 1044 True 228.000000 315 82.659000 2843 3746 2 chr7D.!!$R4 903
6 TraesCS2D01G222100 chr6D 49838728 49841289 2561 True 3352.000000 3352 90.342000 3817 6390 1 chr6D.!!$R1 2573
7 TraesCS2D01G222100 chr6D 293606391 293608622 2231 False 2739.000000 2739 88.845000 4108 6360 1 chr6D.!!$F2 2252
8 TraesCS2D01G222100 chr6D 164815412 164821025 5613 False 788.000000 1094 88.592333 3815 4790 3 chr6D.!!$F4 975
9 TraesCS2D01G222100 chr6B 10379440 10381999 2559 False 2946.000000 2946 87.529000 3817 6379 1 chr6B.!!$F1 2562
10 TraesCS2D01G222100 chr6B 674359648 674361891 2243 False 2819.000000 2819 89.404000 4108 6356 1 chr6B.!!$F2 2248
11 TraesCS2D01G222100 chr3D 12216247 12218472 2225 True 2904.000000 2904 90.231000 4121 6359 1 chr3D.!!$R2 2238
12 TraesCS2D01G222100 chr3D 315067 317304 2237 True 2769.000000 2769 89.041000 4108 6356 1 chr3D.!!$R1 2248
13 TraesCS2D01G222100 chr3D 506003231 506004094 863 False 1051.000000 1051 88.550000 2852 3755 1 chr3D.!!$F1 903
14 TraesCS2D01G222100 chr3D 61696262 61696865 603 True 647.000000 647 86.088000 30 636 1 chr3D.!!$R3 606
15 TraesCS2D01G222100 chr1D 418309677 418311837 2160 True 2752.000000 2752 89.671000 4158 6332 1 chr1D.!!$R4 2174
16 TraesCS2D01G222100 chr2B 245784088 245785122 1034 True 1393.000000 1393 90.951000 1 1056 1 chr2B.!!$R6 1055
17 TraesCS2D01G222100 chr2B 214692886 214693870 984 True 1103.000000 1103 86.918000 3817 4818 1 chr2B.!!$R3 1001
18 TraesCS2D01G222100 chr2B 245685865 245691906 6041 True 1101.200000 2569 93.115800 845 8666 5 chr2B.!!$R7 7821
19 TraesCS2D01G222100 chr1B 457326864 457329478 2614 False 1237.000000 2152 87.422000 3852 6437 2 chr1B.!!$F2 2585
20 TraesCS2D01G222100 chr1B 424173476 424175938 2462 True 245.500000 248 90.317000 3816 4017 2 chr1B.!!$R1 201
21 TraesCS2D01G222100 chr2A 203287665 203288448 783 True 900.000000 900 87.546000 1398 2193 1 chr2A.!!$R2 795
22 TraesCS2D01G222100 chr2A 203264737 203265549 812 True 878.000000 878 86.536000 7921 8718 1 chr2A.!!$R1 797
23 TraesCS2D01G222100 chr2A 203297226 203298237 1011 True 669.000000 931 89.712000 1 1348 2 chr2A.!!$R5 1347
24 TraesCS2D01G222100 chr2A 203279830 203281974 2144 True 662.500000 1694 93.955000 2331 7927 4 chr2A.!!$R4 5596
25 TraesCS2D01G222100 chr4A 743787616 743788852 1236 True 1349.000000 1349 86.356000 3827 5087 1 chr4A.!!$R5 1260
26 TraesCS2D01G222100 chr4A 7162429 7163353 924 True 1312.000000 1312 92.649000 2851 3754 1 chr4A.!!$R1 903
27 TraesCS2D01G222100 chr4B 75036430 75037343 913 True 1345.000000 1345 93.239000 2841 3754 1 chr4B.!!$R1 913
28 TraesCS2D01G222100 chr5D 255473449 255474699 1250 True 1158.000000 1158 83.448000 3817 5115 1 chr5D.!!$R2 1298
29 TraesCS2D01G222100 chr5D 486815079 486817679 2600 True 290.000000 291 96.588500 3816 6447 2 chr5D.!!$R5 2631
30 TraesCS2D01G222100 chr5D 46615445 46616394 949 True 280.500000 283 79.794500 2843 3746 2 chr5D.!!$R4 903
31 TraesCS2D01G222100 chr5D 510919122 510920070 948 False 256.250000 361 89.997000 2264 7560 4 chr5D.!!$F2 5296
32 TraesCS2D01G222100 chr5D 548626640 548627596 956 True 237.000000 294 87.147500 2843 3756 2 chr5D.!!$R6 913
33 TraesCS2D01G222100 chrUn 105630120 105631116 996 False 1068.000000 1068 86.282000 3817 4804 1 chrUn.!!$F5 987
34 TraesCS2D01G222100 chrUn 404904193 404906382 2189 True 778.000000 778 86.864000 3817 4514 2 chrUn.!!$R10 697
35 TraesCS2D01G222100 chr1A 557993318 557994559 1241 True 639.500000 854 92.489500 2843 3758 2 chr1A.!!$R1 915
36 TraesCS2D01G222100 chr4D 93072440 93075378 2938 False 485.500000 802 89.923000 3816 4484 2 chr4D.!!$F4 668
37 TraesCS2D01G222100 chr4D 95827793 95828768 975 True 410.000000 649 91.829000 3816 4307 2 chr4D.!!$R4 491
38 TraesCS2D01G222100 chr4D 93072007 93075547 3540 True 287.666667 555 94.231000 2843 3435 3 chr4D.!!$R3 592
39 TraesCS2D01G222100 chr5A 11230727 11231379 652 False 715.000000 715 86.495000 3817 4471 1 chr5A.!!$F1 654
40 TraesCS2D01G222100 chr5A 639188521 639189659 1138 False 301.666667 479 85.369000 2363 7706 3 chr5A.!!$F3 5343
41 TraesCS2D01G222100 chr7B 364212481 364212981 500 False 562.000000 562 87.276000 3812 4302 1 chr7B.!!$F1 490
42 TraesCS2D01G222100 chr3A 70721150 70721734 584 True 545.000000 545 83.580000 30 634 1 chr3A.!!$R1 604
43 TraesCS2D01G222100 chr5B 641928915 641929555 640 False 225.000000 267 85.104000 2296 7250 2 chr5B.!!$F4 4954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
811 819 0.168788 ATCATCAACTTGGCAACGCG 59.831 50.000 3.53 3.53 42.51 6.01 F
1057 1114 0.322975 AGCCAACTCGTGCTTGATCT 59.677 50.000 0.00 0.00 32.94 2.75 F
1832 1892 0.603569 AACCTGAGGTACAGCGTGAG 59.396 55.000 3.68 0.00 44.52 3.51 F
3199 8519 1.913419 GACTGGGAAGTGGGAATGGTA 59.087 52.381 0.00 0.00 0.00 3.25 F
3276 8602 1.640428 CCATCTTTCTCGCGCAACTA 58.360 50.000 8.75 0.00 0.00 2.24 F
3418 8860 1.800586 GTGATGAACTTCTTGCGAGCA 59.199 47.619 0.00 0.00 0.00 4.26 F
4058 10055 3.695060 GACGGTCAGACTGGAGAGAATAA 59.305 47.826 14.20 0.00 0.00 1.40 F
5337 11850 2.044352 TCGATCGGTGGAGAGGCA 60.044 61.111 16.41 0.00 0.00 4.75 F
6067 14305 1.002251 TCAAAAAGAAACCGCGCGATT 60.002 42.857 34.63 25.37 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 2092 0.179089 CCTCCCTGCATCGAAGTCAG 60.179 60.000 0.00 0.0 0.00 3.51 R
2018 2100 0.182299 CTCCCTTTCCTCCCTGCATC 59.818 60.000 0.00 0.0 0.00 3.91 R
3251 8577 0.179127 CGCGAGAAAGATGGCTCTCA 60.179 55.000 0.00 0.0 38.40 3.27 R
4964 11078 0.381089 GTCGACCTCTCGTGGTATGG 59.619 60.000 3.51 0.0 41.00 2.74 R
5121 11244 0.822121 GCCGTTGTGTCTCCCCTTTT 60.822 55.000 0.00 0.0 0.00 2.27 R
5314 11827 0.751643 TCTCCACCGATCGAGCATCA 60.752 55.000 18.66 0.0 33.17 3.07 R
5782 13662 2.943345 GCGACGGCCAATCATAGCG 61.943 63.158 2.24 0.0 0.00 4.26 R
7252 15704 0.738975 CGCTCAGGAGATTCACCGTA 59.261 55.000 0.00 0.0 0.00 4.02 R
7970 16526 0.717224 GTTCGCTCGATTTAACGGCA 59.283 50.000 0.00 0.0 32.76 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
246 254 1.005347 CGTGACGTTCTGGTTGTTGAC 60.005 52.381 0.00 0.00 0.00 3.18
279 287 0.600255 CCGACGTTATCCATGGAGGC 60.600 60.000 21.33 7.59 37.29 4.70
551 559 2.359478 GGTTGGCCTGGTACGTGG 60.359 66.667 3.32 0.00 0.00 4.94
650 658 4.077184 GGGATGCCACGACCACGA 62.077 66.667 0.00 0.00 42.66 4.35
726 734 6.362820 GTGATCGAATCGGACTATTAAGGAAC 59.637 42.308 1.76 0.00 0.00 3.62
727 735 5.840243 TCGAATCGGACTATTAAGGAACA 57.160 39.130 1.76 0.00 0.00 3.18
729 737 5.359009 TCGAATCGGACTATTAAGGAACACT 59.641 40.000 1.76 0.00 0.00 3.55
730 738 6.040878 CGAATCGGACTATTAAGGAACACTT 58.959 40.000 0.00 0.00 43.28 3.16
731 739 6.534079 CGAATCGGACTATTAAGGAACACTTT 59.466 38.462 0.00 0.00 40.64 2.66
732 740 7.064253 CGAATCGGACTATTAAGGAACACTTTT 59.936 37.037 0.00 0.00 40.64 2.27
734 742 8.713737 ATCGGACTATTAAGGAACACTTTTAC 57.286 34.615 0.00 0.00 40.64 2.01
749 757 4.217983 CACTTTTACTACTGGAGACCGAGT 59.782 45.833 0.00 0.00 0.00 4.18
750 758 4.217983 ACTTTTACTACTGGAGACCGAGTG 59.782 45.833 0.00 0.00 0.00 3.51
752 760 0.697079 ACTACTGGAGACCGAGTGGA 59.303 55.000 0.00 0.00 39.21 4.02
753 761 1.340211 ACTACTGGAGACCGAGTGGAG 60.340 57.143 0.00 0.00 39.21 3.86
754 762 0.989602 TACTGGAGACCGAGTGGAGA 59.010 55.000 0.00 0.00 39.21 3.71
755 763 0.609681 ACTGGAGACCGAGTGGAGAC 60.610 60.000 0.00 0.00 39.21 3.36
756 764 1.304217 TGGAGACCGAGTGGAGACC 60.304 63.158 0.00 0.00 39.21 3.85
758 766 1.376942 GAGACCGAGTGGAGACCGA 60.377 63.158 0.00 0.00 39.21 4.69
759 767 1.370587 GAGACCGAGTGGAGACCGAG 61.371 65.000 0.00 0.00 39.21 4.63
760 768 1.376942 GACCGAGTGGAGACCGAGA 60.377 63.158 0.00 0.00 39.21 4.04
761 769 0.959372 GACCGAGTGGAGACCGAGAA 60.959 60.000 0.00 0.00 39.21 2.87
762 770 0.961358 ACCGAGTGGAGACCGAGAAG 60.961 60.000 0.00 0.00 39.21 2.85
803 811 5.097529 CGACCCAATCAAATCATCAACTTG 58.902 41.667 0.00 0.00 0.00 3.16
811 819 0.168788 ATCATCAACTTGGCAACGCG 59.831 50.000 3.53 3.53 42.51 6.01
825 833 2.629002 ACGCGAGTTGCCAATTTCT 58.371 47.368 15.93 0.00 46.40 2.52
826 834 1.803334 ACGCGAGTTGCCAATTTCTA 58.197 45.000 15.93 0.00 46.40 2.10
828 836 1.732259 CGCGAGTTGCCAATTTCTACT 59.268 47.619 0.00 0.00 42.08 2.57
832 840 3.667960 CGAGTTGCCAATTTCTACTGCAC 60.668 47.826 0.00 0.00 0.00 4.57
833 841 3.490348 AGTTGCCAATTTCTACTGCACT 58.510 40.909 0.00 0.00 0.00 4.40
835 843 4.455877 AGTTGCCAATTTCTACTGCACTAC 59.544 41.667 0.00 0.00 0.00 2.73
836 844 4.286297 TGCCAATTTCTACTGCACTACT 57.714 40.909 0.00 0.00 0.00 2.57
838 846 4.020218 TGCCAATTTCTACTGCACTACTCT 60.020 41.667 0.00 0.00 0.00 3.24
839 847 5.186992 TGCCAATTTCTACTGCACTACTCTA 59.813 40.000 0.00 0.00 0.00 2.43
840 848 5.520649 GCCAATTTCTACTGCACTACTCTAC 59.479 44.000 0.00 0.00 0.00 2.59
843 851 4.966965 TTCTACTGCACTACTCTACTGC 57.033 45.455 0.00 0.00 0.00 4.40
906 930 2.048597 TCGTGCGCTTGGGTAGTG 60.049 61.111 9.73 0.00 37.43 2.74
972 996 2.035066 GTCAAAATCAGCCACTTGCAGT 59.965 45.455 0.00 0.00 44.83 4.40
985 1009 4.023193 CCACTTGCAGTAGTACCCTTTTTG 60.023 45.833 0.00 0.00 0.00 2.44
991 1015 4.319984 GCAGTAGTACCCTTTTTGTTTCCG 60.320 45.833 0.00 0.00 0.00 4.30
1056 1113 0.445436 CAGCCAACTCGTGCTTGATC 59.555 55.000 0.00 0.00 35.12 2.92
1057 1114 0.322975 AGCCAACTCGTGCTTGATCT 59.677 50.000 0.00 0.00 32.94 2.75
1058 1115 1.550524 AGCCAACTCGTGCTTGATCTA 59.449 47.619 0.00 0.00 32.94 1.98
1059 1116 1.661112 GCCAACTCGTGCTTGATCTAC 59.339 52.381 0.00 0.00 0.00 2.59
1060 1117 2.271800 CCAACTCGTGCTTGATCTACC 58.728 52.381 0.00 0.00 0.00 3.18
1088 1145 0.795085 CGCTTTCTGCCAGAGACAAG 59.205 55.000 0.00 0.00 38.78 3.16
1110 1167 4.514577 CTCGGCGGCATCCTCGTT 62.515 66.667 10.53 0.00 0.00 3.85
1832 1892 0.603569 AACCTGAGGTACAGCGTGAG 59.396 55.000 3.68 0.00 44.52 3.51
1930 2005 2.265904 GCAGGTCGGGTTTGGTTCC 61.266 63.158 0.00 0.00 0.00 3.62
2004 2086 5.584649 TCTCCGTTTGATGTTGTATCCATTC 59.415 40.000 0.00 0.00 0.00 2.67
2006 2088 4.397730 CCGTTTGATGTTGTATCCATTCCA 59.602 41.667 0.00 0.00 0.00 3.53
2008 2090 6.405731 CCGTTTGATGTTGTATCCATTCCAAT 60.406 38.462 0.00 0.00 0.00 3.16
2009 2091 6.473131 CGTTTGATGTTGTATCCATTCCAATG 59.527 38.462 0.00 0.00 36.17 2.82
2010 2092 5.518848 TGATGTTGTATCCATTCCAATGC 57.481 39.130 0.00 0.00 35.08 3.56
2014 2096 4.398988 TGTTGTATCCATTCCAATGCTGAC 59.601 41.667 0.00 0.00 35.08 3.51
2018 2100 2.358957 TCCATTCCAATGCTGACTTCG 58.641 47.619 0.00 0.00 35.08 3.79
2121 2203 4.419522 TTGCTTTTATTCGCTCCAAGAC 57.580 40.909 0.00 0.00 0.00 3.01
2159 2241 4.217767 AGCATGACGACTGTGAGTAACTAA 59.782 41.667 0.00 0.00 0.00 2.24
2160 2242 4.323868 GCATGACGACTGTGAGTAACTAAC 59.676 45.833 0.00 0.00 0.00 2.34
2161 2243 5.700846 CATGACGACTGTGAGTAACTAACT 58.299 41.667 0.00 0.00 42.80 2.24
2162 2244 5.104562 TGACGACTGTGAGTAACTAACTG 57.895 43.478 0.00 0.00 39.07 3.16
2178 2264 5.376625 ACTAACTGGTCAATTGCTCAAAGA 58.623 37.500 0.00 0.00 0.00 2.52
2194 2280 9.905713 TTGCTCAAAGAACTGGATATTATTAGT 57.094 29.630 0.00 0.00 0.00 2.24
2195 2281 9.330063 TGCTCAAAGAACTGGATATTATTAGTG 57.670 33.333 0.00 0.00 0.00 2.74
2196 2282 9.331282 GCTCAAAGAACTGGATATTATTAGTGT 57.669 33.333 0.00 0.00 0.00 3.55
2198 2284 9.109393 TCAAAGAACTGGATATTATTAGTGTGC 57.891 33.333 0.00 0.00 0.00 4.57
2199 2285 8.892723 CAAAGAACTGGATATTATTAGTGTGCA 58.107 33.333 0.00 0.00 0.00 4.57
2200 2286 8.438676 AAGAACTGGATATTATTAGTGTGCAC 57.561 34.615 10.75 10.75 0.00 4.57
2201 2287 7.796054 AGAACTGGATATTATTAGTGTGCACT 58.204 34.615 19.41 9.90 45.02 4.40
2240 2339 4.754114 GGAACAGCATTTAACAAAATGGCA 59.246 37.500 11.59 0.00 39.79 4.92
2243 2342 5.609423 ACAGCATTTAACAAAATGGCAAGA 58.391 33.333 11.59 0.00 39.79 3.02
2352 2455 7.837202 TTCGGAACTGTATACAAGGTAAATG 57.163 36.000 7.06 0.00 0.00 2.32
2516 2621 2.630098 ACATGGACTGGATCAGATACGG 59.370 50.000 0.00 0.00 35.18 4.02
2659 2958 5.663556 ACAACTTCCTTTTTGGTATTTCCCA 59.336 36.000 0.00 0.00 37.07 4.37
2685 2984 3.054875 TCCTTTCCACTCACATCTCCATG 60.055 47.826 0.00 0.00 35.92 3.66
2816 5135 6.437928 TCATGAAGTGAGTATTGTTGTTTGC 58.562 36.000 0.00 0.00 31.80 3.68
2823 5142 7.940850 AGTGAGTATTGTTGTTTGCAAATACT 58.059 30.769 16.21 16.56 39.47 2.12
2824 5143 8.076178 AGTGAGTATTGTTGTTTGCAAATACTC 58.924 33.333 26.75 26.75 45.05 2.59
2825 5144 7.326063 GTGAGTATTGTTGTTTGCAAATACTCC 59.674 37.037 28.55 21.20 44.70 3.85
2826 5145 6.687604 AGTATTGTTGTTTGCAAATACTCCC 58.312 36.000 16.21 1.50 35.42 4.30
2827 5146 5.806654 ATTGTTGTTTGCAAATACTCCCT 57.193 34.783 16.21 0.00 36.22 4.20
2828 5147 4.846779 TGTTGTTTGCAAATACTCCCTC 57.153 40.909 16.21 0.00 36.22 4.30
2829 5148 4.469657 TGTTGTTTGCAAATACTCCCTCT 58.530 39.130 16.21 0.00 36.22 3.69
2830 5149 4.278170 TGTTGTTTGCAAATACTCCCTCTG 59.722 41.667 16.21 0.00 36.22 3.35
2831 5150 4.098914 TGTTTGCAAATACTCCCTCTGT 57.901 40.909 16.21 0.00 0.00 3.41
2832 5151 5.235850 TGTTTGCAAATACTCCCTCTGTA 57.764 39.130 16.21 0.00 0.00 2.74
2833 5152 5.626142 TGTTTGCAAATACTCCCTCTGTAA 58.374 37.500 16.21 0.00 0.00 2.41
2834 5153 6.065374 TGTTTGCAAATACTCCCTCTGTAAA 58.935 36.000 16.21 0.00 0.00 2.01
2835 5154 6.016610 TGTTTGCAAATACTCCCTCTGTAAAC 60.017 38.462 16.21 7.00 40.67 2.01
2836 5155 5.499004 TGCAAATACTCCCTCTGTAAACT 57.501 39.130 0.00 0.00 0.00 2.66
2837 5156 6.614694 TGCAAATACTCCCTCTGTAAACTA 57.385 37.500 0.00 0.00 0.00 2.24
2838 5157 7.011499 TGCAAATACTCCCTCTGTAAACTAA 57.989 36.000 0.00 0.00 0.00 2.24
2995 8291 4.732065 TGGGGGTAAAAAGGTAAACTGAG 58.268 43.478 0.00 0.00 0.00 3.35
3140 8460 2.049894 TGCGCGCGTACAAGAGAA 60.050 55.556 32.35 0.47 0.00 2.87
3199 8519 1.913419 GACTGGGAAGTGGGAATGGTA 59.087 52.381 0.00 0.00 0.00 3.25
3276 8602 1.640428 CCATCTTTCTCGCGCAACTA 58.360 50.000 8.75 0.00 0.00 2.24
3340 8669 1.828660 CGAGGCGGGATACTCAGGT 60.829 63.158 0.00 0.00 33.36 4.00
3361 8690 2.031870 TGGGTGGAGATCTATCACGTG 58.968 52.381 9.94 9.94 32.65 4.49
3418 8860 1.800586 GTGATGAACTTCTTGCGAGCA 59.199 47.619 0.00 0.00 0.00 4.26
3620 9596 4.695993 TGATGGCGGCTGCGTTGA 62.696 61.111 12.29 0.00 44.10 3.18
3839 9818 5.205056 TGTTAGAAGGGAGAGAGAGGATTC 58.795 45.833 0.00 0.00 0.00 2.52
4058 10055 3.695060 GACGGTCAGACTGGAGAGAATAA 59.305 47.826 14.20 0.00 0.00 1.40
4802 10825 3.962421 CTACGGAGGTAGCGGCGG 61.962 72.222 9.78 0.00 39.72 6.13
5211 11618 4.676444 GCGTATCGCGACACTACA 57.324 55.556 16.44 0.00 44.55 2.74
5337 11850 2.044352 TCGATCGGTGGAGAGGCA 60.044 61.111 16.41 0.00 0.00 4.75
5708 13585 4.477975 GACGAGGCCGACGAGGTG 62.478 72.222 26.51 2.77 43.70 4.00
5996 14228 2.516460 GGAGTAGAGGCGCTCGGA 60.516 66.667 7.64 0.00 35.36 4.55
6067 14305 1.002251 TCAAAAAGAAACCGCGCGATT 60.002 42.857 34.63 25.37 0.00 3.34
6380 14794 3.483587 GAGGGCAAGACACCTCCA 58.516 61.111 0.00 0.00 46.01 3.86
6439 14859 8.041323 CGGGCAATCTCTACTACCAAATATATT 58.959 37.037 0.00 0.00 0.00 1.28
6470 14890 9.490083 ACACTAAACACTCTTATATTACTCCCT 57.510 33.333 0.00 0.00 0.00 4.20
6471 14891 9.968870 CACTAAACACTCTTATATTACTCCCTC 57.031 37.037 0.00 0.00 0.00 4.30
6472 14892 9.145442 ACTAAACACTCTTATATTACTCCCTCC 57.855 37.037 0.00 0.00 0.00 4.30
6473 14893 6.651975 AACACTCTTATATTACTCCCTCCG 57.348 41.667 0.00 0.00 0.00 4.63
6474 14894 5.703310 ACACTCTTATATTACTCCCTCCGT 58.297 41.667 0.00 0.00 0.00 4.69
6475 14895 6.134754 ACACTCTTATATTACTCCCTCCGTT 58.865 40.000 0.00 0.00 0.00 4.44
6476 14896 6.264970 ACACTCTTATATTACTCCCTCCGTTC 59.735 42.308 0.00 0.00 0.00 3.95
6477 14897 5.774184 ACTCTTATATTACTCCCTCCGTTCC 59.226 44.000 0.00 0.00 0.00 3.62
6478 14898 5.708544 TCTTATATTACTCCCTCCGTTCCA 58.291 41.667 0.00 0.00 0.00 3.53
6479 14899 6.138263 TCTTATATTACTCCCTCCGTTCCAA 58.862 40.000 0.00 0.00 0.00 3.53
6480 14900 6.612456 TCTTATATTACTCCCTCCGTTCCAAA 59.388 38.462 0.00 0.00 0.00 3.28
6481 14901 5.703730 ATATTACTCCCTCCGTTCCAAAA 57.296 39.130 0.00 0.00 0.00 2.44
6482 14902 4.586306 ATTACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
6483 14903 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
6484 14904 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
6485 14905 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
6486 14906 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
6487 14907 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
6488 14908 3.118038 TCCCTCCGTTCCAAAATAGATGG 60.118 47.826 0.00 0.00 39.41 3.51
6489 14909 2.618709 CCTCCGTTCCAAAATAGATGGC 59.381 50.000 0.00 0.00 37.88 4.40
6490 14910 3.545703 CTCCGTTCCAAAATAGATGGCT 58.454 45.455 0.00 0.00 37.88 4.75
6491 14911 3.541632 TCCGTTCCAAAATAGATGGCTC 58.458 45.455 0.00 0.00 37.88 4.70
6492 14912 3.054728 TCCGTTCCAAAATAGATGGCTCA 60.055 43.478 0.00 0.00 37.88 4.26
6493 14913 3.694072 CCGTTCCAAAATAGATGGCTCAA 59.306 43.478 0.00 0.00 37.88 3.02
6494 14914 4.438744 CCGTTCCAAAATAGATGGCTCAAC 60.439 45.833 0.00 0.00 37.88 3.18
6495 14915 4.396166 CGTTCCAAAATAGATGGCTCAACT 59.604 41.667 0.00 0.00 37.88 3.16
6496 14916 5.106157 CGTTCCAAAATAGATGGCTCAACTT 60.106 40.000 0.00 0.00 37.88 2.66
6497 14917 6.570378 CGTTCCAAAATAGATGGCTCAACTTT 60.570 38.462 0.00 0.00 37.88 2.66
6498 14918 6.271488 TCCAAAATAGATGGCTCAACTTTG 57.729 37.500 0.00 0.00 37.88 2.77
6499 14919 5.774690 TCCAAAATAGATGGCTCAACTTTGT 59.225 36.000 0.00 0.00 37.88 2.83
6500 14920 6.945435 TCCAAAATAGATGGCTCAACTTTGTA 59.055 34.615 0.00 0.00 37.88 2.41
6501 14921 7.029563 CCAAAATAGATGGCTCAACTTTGTAC 58.970 38.462 0.00 0.00 0.00 2.90
6502 14922 7.094205 CCAAAATAGATGGCTCAACTTTGTACT 60.094 37.037 0.00 0.00 0.00 2.73
6503 14923 8.946085 CAAAATAGATGGCTCAACTTTGTACTA 58.054 33.333 0.00 0.00 0.00 1.82
6504 14924 9.515226 AAAATAGATGGCTCAACTTTGTACTAA 57.485 29.630 0.00 0.00 0.00 2.24
6505 14925 8.494016 AATAGATGGCTCAACTTTGTACTAAC 57.506 34.615 0.00 0.00 0.00 2.34
6506 14926 6.115448 AGATGGCTCAACTTTGTACTAACT 57.885 37.500 0.00 0.00 0.00 2.24
6507 14927 7.241042 AGATGGCTCAACTTTGTACTAACTA 57.759 36.000 0.00 0.00 0.00 2.24
6508 14928 7.852263 AGATGGCTCAACTTTGTACTAACTAT 58.148 34.615 0.00 0.00 0.00 2.12
6509 14929 8.978472 AGATGGCTCAACTTTGTACTAACTATA 58.022 33.333 0.00 0.00 0.00 1.31
6510 14930 9.595823 GATGGCTCAACTTTGTACTAACTATAA 57.404 33.333 0.00 0.00 0.00 0.98
6542 14962 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
6543 14963 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
6544 14964 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
6545 14965 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
6546 14966 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
6547 14967 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
6548 14968 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
6549 14969 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
6550 14970 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
6551 14971 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
6552 14972 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
6553 14973 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
6554 14974 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
6555 14975 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
6556 14976 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
6557 14977 2.019807 TTTGGAACGGAGGGAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
6558 14978 2.019807 TTGGAACGGAGGGAGTAGTT 57.980 50.000 0.00 0.00 0.00 2.24
6559 14979 2.019807 TGGAACGGAGGGAGTAGTTT 57.980 50.000 0.00 0.00 0.00 2.66
6560 14980 3.173953 TGGAACGGAGGGAGTAGTTTA 57.826 47.619 0.00 0.00 0.00 2.01
6561 14981 2.827921 TGGAACGGAGGGAGTAGTTTAC 59.172 50.000 0.00 0.00 0.00 2.01
6562 14982 2.827921 GGAACGGAGGGAGTAGTTTACA 59.172 50.000 0.00 0.00 0.00 2.41
6563 14983 3.119209 GGAACGGAGGGAGTAGTTTACAG 60.119 52.174 0.00 0.00 0.00 2.74
6564 14984 3.446442 ACGGAGGGAGTAGTTTACAGA 57.554 47.619 0.00 0.00 0.00 3.41
6565 14985 3.354467 ACGGAGGGAGTAGTTTACAGAG 58.646 50.000 0.00 0.00 0.00 3.35
6566 14986 2.688958 CGGAGGGAGTAGTTTACAGAGG 59.311 54.545 0.00 0.00 0.00 3.69
6567 14987 3.032459 GGAGGGAGTAGTTTACAGAGGG 58.968 54.545 0.00 0.00 0.00 4.30
6568 14988 3.309701 GGAGGGAGTAGTTTACAGAGGGA 60.310 52.174 0.00 0.00 0.00 4.20
6569 14989 3.955551 GAGGGAGTAGTTTACAGAGGGAG 59.044 52.174 0.00 0.00 0.00 4.30
6570 14990 3.337301 AGGGAGTAGTTTACAGAGGGAGT 59.663 47.826 0.00 0.00 0.00 3.85
6571 14991 4.543337 AGGGAGTAGTTTACAGAGGGAGTA 59.457 45.833 0.00 0.00 0.00 2.59
6572 14992 4.644234 GGGAGTAGTTTACAGAGGGAGTAC 59.356 50.000 0.00 0.00 0.00 2.73
6573 14993 4.644234 GGAGTAGTTTACAGAGGGAGTACC 59.356 50.000 0.00 0.00 40.67 3.34
6590 15010 8.890124 GGGAGTACCTTCTTTAATAGTCATTC 57.110 38.462 0.00 0.00 35.85 2.67
6591 15011 8.483758 GGGAGTACCTTCTTTAATAGTCATTCA 58.516 37.037 0.00 0.00 35.85 2.57
6608 15028 8.743085 AGTCATTCATAATCACTGTAGCATTT 57.257 30.769 0.00 0.00 0.00 2.32
6609 15029 8.834465 AGTCATTCATAATCACTGTAGCATTTC 58.166 33.333 0.00 0.00 0.00 2.17
6610 15030 8.834465 GTCATTCATAATCACTGTAGCATTTCT 58.166 33.333 0.00 0.00 0.00 2.52
6611 15031 8.833493 TCATTCATAATCACTGTAGCATTTCTG 58.167 33.333 0.00 0.00 0.00 3.02
6612 15032 7.558161 TTCATAATCACTGTAGCATTTCTGG 57.442 36.000 0.00 0.00 0.00 3.86
6613 15033 6.888105 TCATAATCACTGTAGCATTTCTGGA 58.112 36.000 0.00 0.00 0.00 3.86
6614 15034 7.337938 TCATAATCACTGTAGCATTTCTGGAA 58.662 34.615 0.00 0.00 0.00 3.53
6615 15035 7.828717 TCATAATCACTGTAGCATTTCTGGAAA 59.171 33.333 0.00 0.00 34.46 3.13
6616 15036 6.506500 AATCACTGTAGCATTTCTGGAAAG 57.493 37.500 2.29 0.00 33.32 2.62
6617 15037 4.326826 TCACTGTAGCATTTCTGGAAAGG 58.673 43.478 3.74 3.74 35.43 3.11
6618 15038 4.041567 TCACTGTAGCATTTCTGGAAAGGA 59.958 41.667 11.16 0.00 34.35 3.36
6619 15039 4.761739 CACTGTAGCATTTCTGGAAAGGAA 59.238 41.667 11.16 0.00 34.35 3.36
6620 15040 5.006386 ACTGTAGCATTTCTGGAAAGGAAG 58.994 41.667 11.16 5.64 34.35 3.46
6621 15041 4.985538 TGTAGCATTTCTGGAAAGGAAGT 58.014 39.130 11.16 0.00 34.35 3.01
6622 15042 5.385198 TGTAGCATTTCTGGAAAGGAAGTT 58.615 37.500 11.16 0.00 34.35 2.66
6623 15043 4.861102 AGCATTTCTGGAAAGGAAGTTG 57.139 40.909 11.16 1.03 34.35 3.16
6624 15044 3.006217 AGCATTTCTGGAAAGGAAGTTGC 59.994 43.478 11.16 9.54 34.35 4.17
6625 15045 3.006217 GCATTTCTGGAAAGGAAGTTGCT 59.994 43.478 11.16 0.00 34.35 3.91
6626 15046 4.218417 GCATTTCTGGAAAGGAAGTTGCTA 59.782 41.667 11.16 0.00 34.35 3.49
6627 15047 5.703876 CATTTCTGGAAAGGAAGTTGCTAC 58.296 41.667 0.00 0.00 34.35 3.58
6628 15048 4.431416 TTCTGGAAAGGAAGTTGCTACA 57.569 40.909 0.00 0.00 0.00 2.74
6629 15049 4.008074 TCTGGAAAGGAAGTTGCTACAG 57.992 45.455 13.79 13.79 0.00 2.74
6630 15050 3.077359 CTGGAAAGGAAGTTGCTACAGG 58.923 50.000 12.74 0.16 0.00 4.00
6631 15051 2.441750 TGGAAAGGAAGTTGCTACAGGT 59.558 45.455 0.00 0.00 0.00 4.00
6632 15052 3.075148 GGAAAGGAAGTTGCTACAGGTC 58.925 50.000 0.00 0.00 0.00 3.85
6633 15053 3.496160 GGAAAGGAAGTTGCTACAGGTCA 60.496 47.826 0.00 0.00 0.00 4.02
6634 15054 4.327680 GAAAGGAAGTTGCTACAGGTCAT 58.672 43.478 0.00 0.00 0.00 3.06
6635 15055 5.488341 GAAAGGAAGTTGCTACAGGTCATA 58.512 41.667 0.00 0.00 0.00 2.15
6636 15056 4.744795 AGGAAGTTGCTACAGGTCATAG 57.255 45.455 0.00 0.00 0.00 2.23
6637 15057 3.118592 AGGAAGTTGCTACAGGTCATAGC 60.119 47.826 0.00 0.00 44.48 2.97
6638 15058 2.586258 AGTTGCTACAGGTCATAGCG 57.414 50.000 0.13 0.00 46.73 4.26
6639 15059 1.825474 AGTTGCTACAGGTCATAGCGT 59.175 47.619 0.13 0.00 46.73 5.07
6640 15060 3.021695 AGTTGCTACAGGTCATAGCGTA 58.978 45.455 0.13 0.00 46.73 4.42
6641 15061 3.637229 AGTTGCTACAGGTCATAGCGTAT 59.363 43.478 0.13 0.00 46.73 3.06
6642 15062 4.825634 AGTTGCTACAGGTCATAGCGTATA 59.174 41.667 0.13 0.00 46.73 1.47
6643 15063 4.761235 TGCTACAGGTCATAGCGTATAC 57.239 45.455 0.00 0.00 46.73 1.47
6644 15064 4.139038 TGCTACAGGTCATAGCGTATACA 58.861 43.478 3.32 0.00 46.73 2.29
6645 15065 4.215613 TGCTACAGGTCATAGCGTATACAG 59.784 45.833 3.32 0.00 46.73 2.74
6646 15066 4.215827 GCTACAGGTCATAGCGTATACAGT 59.784 45.833 3.32 0.00 36.02 3.55
6647 15067 5.278364 GCTACAGGTCATAGCGTATACAGTT 60.278 44.000 3.32 0.00 36.02 3.16
6648 15068 6.072838 GCTACAGGTCATAGCGTATACAGTTA 60.073 42.308 3.32 0.00 36.02 2.24
6649 15069 6.315091 ACAGGTCATAGCGTATACAGTTAG 57.685 41.667 3.32 0.00 0.00 2.34
6650 15070 6.060136 ACAGGTCATAGCGTATACAGTTAGA 58.940 40.000 3.32 0.00 0.00 2.10
6651 15071 6.715718 ACAGGTCATAGCGTATACAGTTAGAT 59.284 38.462 3.32 0.00 0.00 1.98
6652 15072 7.230913 ACAGGTCATAGCGTATACAGTTAGATT 59.769 37.037 3.32 0.00 0.00 2.40
6653 15073 8.727910 CAGGTCATAGCGTATACAGTTAGATTA 58.272 37.037 3.32 0.00 0.00 1.75
6654 15074 8.948145 AGGTCATAGCGTATACAGTTAGATTAG 58.052 37.037 3.32 0.00 0.00 1.73
6655 15075 8.728833 GGTCATAGCGTATACAGTTAGATTAGT 58.271 37.037 3.32 0.00 0.00 2.24
6656 15076 9.544314 GTCATAGCGTATACAGTTAGATTAGTG 57.456 37.037 3.32 0.00 0.00 2.74
6657 15077 8.235226 TCATAGCGTATACAGTTAGATTAGTGC 58.765 37.037 3.32 0.00 0.00 4.40
6658 15078 6.387041 AGCGTATACAGTTAGATTAGTGCA 57.613 37.500 3.32 0.00 0.00 4.57
6659 15079 6.802608 AGCGTATACAGTTAGATTAGTGCAA 58.197 36.000 3.32 0.00 0.00 4.08
6660 15080 7.434492 AGCGTATACAGTTAGATTAGTGCAAT 58.566 34.615 3.32 0.00 0.00 3.56
6661 15081 7.382488 AGCGTATACAGTTAGATTAGTGCAATG 59.618 37.037 3.32 0.00 0.00 2.82
6662 15082 7.169308 GCGTATACAGTTAGATTAGTGCAATGT 59.831 37.037 3.32 0.00 0.00 2.71
6663 15083 9.673454 CGTATACAGTTAGATTAGTGCAATGTA 57.327 33.333 3.32 0.00 0.00 2.29
6667 15087 8.792830 ACAGTTAGATTAGTGCAATGTACATT 57.207 30.769 15.47 15.47 0.00 2.71
6668 15088 8.883731 ACAGTTAGATTAGTGCAATGTACATTC 58.116 33.333 18.25 13.15 0.00 2.67
6669 15089 9.102757 CAGTTAGATTAGTGCAATGTACATTCT 57.897 33.333 18.25 14.44 0.00 2.40
6670 15090 9.102757 AGTTAGATTAGTGCAATGTACATTCTG 57.897 33.333 18.25 10.43 0.00 3.02
6671 15091 8.883731 GTTAGATTAGTGCAATGTACATTCTGT 58.116 33.333 18.25 6.35 0.00 3.41
6672 15092 7.928307 AGATTAGTGCAATGTACATTCTGTT 57.072 32.000 18.25 7.59 0.00 3.16
6673 15093 7.755591 AGATTAGTGCAATGTACATTCTGTTG 58.244 34.615 18.25 9.73 0.00 3.33
6674 15094 4.771590 AGTGCAATGTACATTCTGTTGG 57.228 40.909 18.25 7.47 0.00 3.77
6675 15095 4.144297 AGTGCAATGTACATTCTGTTGGT 58.856 39.130 18.25 0.00 0.00 3.67
6676 15096 4.022935 AGTGCAATGTACATTCTGTTGGTG 60.023 41.667 18.25 6.82 0.00 4.17
6677 15097 3.888323 TGCAATGTACATTCTGTTGGTGT 59.112 39.130 18.25 0.00 0.00 4.16
6678 15098 5.049060 GTGCAATGTACATTCTGTTGGTGTA 60.049 40.000 18.25 2.54 0.00 2.90
6679 15099 5.532779 TGCAATGTACATTCTGTTGGTGTAA 59.467 36.000 18.25 0.00 30.87 2.41
6680 15100 6.086222 GCAATGTACATTCTGTTGGTGTAAG 58.914 40.000 18.25 4.01 30.87 2.34
6681 15101 6.611381 CAATGTACATTCTGTTGGTGTAAGG 58.389 40.000 18.25 0.00 30.87 2.69
6682 15102 5.554437 TGTACATTCTGTTGGTGTAAGGA 57.446 39.130 0.00 0.00 30.87 3.36
6683 15103 5.931294 TGTACATTCTGTTGGTGTAAGGAA 58.069 37.500 0.00 0.00 30.87 3.36
6684 15104 6.539173 TGTACATTCTGTTGGTGTAAGGAAT 58.461 36.000 0.00 0.00 30.87 3.01
6685 15105 7.001674 TGTACATTCTGTTGGTGTAAGGAATT 58.998 34.615 0.00 0.00 30.87 2.17
6686 15106 8.158132 TGTACATTCTGTTGGTGTAAGGAATTA 58.842 33.333 0.00 0.00 30.87 1.40
6687 15107 7.448748 ACATTCTGTTGGTGTAAGGAATTAC 57.551 36.000 0.00 0.00 0.00 1.89
6688 15108 7.231467 ACATTCTGTTGGTGTAAGGAATTACT 58.769 34.615 0.00 0.00 0.00 2.24
6689 15109 7.174946 ACATTCTGTTGGTGTAAGGAATTACTG 59.825 37.037 0.00 0.00 0.00 2.74
6690 15110 6.428083 TCTGTTGGTGTAAGGAATTACTGA 57.572 37.500 0.00 0.00 0.00 3.41
6691 15111 6.833041 TCTGTTGGTGTAAGGAATTACTGAA 58.167 36.000 0.00 0.00 0.00 3.02
6692 15112 6.934645 TCTGTTGGTGTAAGGAATTACTGAAG 59.065 38.462 0.00 0.00 0.00 3.02
6693 15113 6.597562 TGTTGGTGTAAGGAATTACTGAAGT 58.402 36.000 0.00 0.00 0.00 3.01
6694 15114 7.057894 TGTTGGTGTAAGGAATTACTGAAGTT 58.942 34.615 0.00 0.00 0.00 2.66
6695 15115 7.558444 TGTTGGTGTAAGGAATTACTGAAGTTT 59.442 33.333 0.00 0.00 0.00 2.66
6696 15116 7.739498 TGGTGTAAGGAATTACTGAAGTTTC 57.261 36.000 0.00 0.00 0.00 2.78
6697 15117 6.713450 TGGTGTAAGGAATTACTGAAGTTTCC 59.287 38.462 0.00 5.98 35.94 3.13
6698 15118 6.713450 GGTGTAAGGAATTACTGAAGTTTCCA 59.287 38.462 13.75 0.00 37.38 3.53
6699 15119 7.393515 GGTGTAAGGAATTACTGAAGTTTCCAT 59.606 37.037 13.75 6.74 37.38 3.41
6700 15120 8.793592 GTGTAAGGAATTACTGAAGTTTCCATT 58.206 33.333 13.75 8.90 37.38 3.16
6703 15123 7.631717 AGGAATTACTGAAGTTTCCATTAGC 57.368 36.000 13.75 0.00 37.38 3.09
6704 15124 7.175104 AGGAATTACTGAAGTTTCCATTAGCA 58.825 34.615 13.75 0.00 37.38 3.49
6705 15125 7.669722 AGGAATTACTGAAGTTTCCATTAGCAA 59.330 33.333 13.75 0.00 37.38 3.91
6706 15126 8.303876 GGAATTACTGAAGTTTCCATTAGCAAA 58.696 33.333 8.45 0.00 35.83 3.68
6707 15127 9.346725 GAATTACTGAAGTTTCCATTAGCAAAG 57.653 33.333 0.00 0.00 0.00 2.77
6708 15128 7.817418 TTACTGAAGTTTCCATTAGCAAAGT 57.183 32.000 0.00 0.00 0.00 2.66
6709 15129 6.715347 ACTGAAGTTTCCATTAGCAAAGTT 57.285 33.333 0.00 0.00 0.00 2.66
6710 15130 7.817418 ACTGAAGTTTCCATTAGCAAAGTTA 57.183 32.000 0.00 0.00 0.00 2.24
6711 15131 7.649057 ACTGAAGTTTCCATTAGCAAAGTTAC 58.351 34.615 0.00 0.00 0.00 2.50
6712 15132 7.502561 ACTGAAGTTTCCATTAGCAAAGTTACT 59.497 33.333 0.00 0.00 0.00 2.24
6713 15133 8.911918 TGAAGTTTCCATTAGCAAAGTTACTA 57.088 30.769 0.00 0.00 0.00 1.82
6714 15134 8.780249 TGAAGTTTCCATTAGCAAAGTTACTAC 58.220 33.333 0.00 0.00 0.00 2.73
6715 15135 7.360575 AGTTTCCATTAGCAAAGTTACTACG 57.639 36.000 0.00 0.00 0.00 3.51
6716 15136 6.932960 AGTTTCCATTAGCAAAGTTACTACGT 59.067 34.615 0.00 0.00 0.00 3.57
6717 15137 8.090214 AGTTTCCATTAGCAAAGTTACTACGTA 58.910 33.333 0.00 0.00 0.00 3.57
6718 15138 8.378421 GTTTCCATTAGCAAAGTTACTACGTAG 58.622 37.037 20.97 20.97 0.00 3.51
6719 15139 7.395190 TCCATTAGCAAAGTTACTACGTAGA 57.605 36.000 28.74 9.88 0.00 2.59
6720 15140 7.829725 TCCATTAGCAAAGTTACTACGTAGAA 58.170 34.615 28.74 15.06 0.00 2.10
6721 15141 8.472413 TCCATTAGCAAAGTTACTACGTAGAAT 58.528 33.333 28.74 10.20 0.00 2.40
6722 15142 9.095065 CCATTAGCAAAGTTACTACGTAGAATT 57.905 33.333 28.74 10.19 0.00 2.17
6723 15143 9.901724 CATTAGCAAAGTTACTACGTAGAATTG 57.098 33.333 28.74 21.70 0.00 2.32
6724 15144 9.649167 ATTAGCAAAGTTACTACGTAGAATTGT 57.351 29.630 28.74 9.53 0.00 2.71
6725 15145 7.958053 AGCAAAGTTACTACGTAGAATTGTT 57.042 32.000 28.74 17.71 0.00 2.83
6726 15146 8.015409 AGCAAAGTTACTACGTAGAATTGTTC 57.985 34.615 28.74 10.79 0.00 3.18
6727 15147 7.871463 AGCAAAGTTACTACGTAGAATTGTTCT 59.129 33.333 28.74 12.65 43.72 3.01
6728 15148 8.160976 GCAAAGTTACTACGTAGAATTGTTCTC 58.839 37.037 28.74 7.11 41.14 2.87
6729 15149 9.408069 CAAAGTTACTACGTAGAATTGTTCTCT 57.592 33.333 28.74 4.98 41.14 3.10
6732 15152 9.447157 AGTTACTACGTAGAATTGTTCTCTACT 57.553 33.333 28.74 8.13 42.05 2.57
6735 15155 8.564509 ACTACGTAGAATTGTTCTCTACTCTT 57.435 34.615 28.74 0.00 42.05 2.85
6999 15423 1.115467 AAGTCGGAGGCCATACTCAG 58.885 55.000 5.01 0.00 39.27 3.35
7060 15489 3.821600 TGCATACAAAAGGGCTTTCGTAA 59.178 39.130 0.00 0.00 31.45 3.18
7082 15512 8.736742 CGTAAATTGCAGATATCAACATTCAAC 58.263 33.333 5.32 1.64 0.00 3.18
7111 15549 7.227512 GTGTGCTTCTATGCCTAACTGATAATT 59.772 37.037 0.00 0.00 0.00 1.40
7135 15583 4.373116 AGCGGGTATATGGCGCCG 62.373 66.667 23.90 8.11 0.00 6.46
7252 15704 1.683385 TCAGATGATTGCGAGACGGAT 59.317 47.619 0.00 0.00 0.00 4.18
7270 15722 2.288518 GGATACGGTGAATCTCCTGAGC 60.289 54.545 0.00 0.00 0.00 4.26
7311 15763 3.297620 CAGCAAGCCGGCAACCTT 61.298 61.111 31.54 11.63 35.83 3.50
7312 15764 1.971167 CAGCAAGCCGGCAACCTTA 60.971 57.895 31.54 0.00 35.83 2.69
7464 16013 1.272490 CCGAATCCAGGCGCTAAGATA 59.728 52.381 7.64 0.00 0.00 1.98
7495 16050 2.203195 TTGCTGTGCGTCCAAGCT 60.203 55.556 0.00 0.00 38.13 3.74
7501 16056 3.555324 TGCGTCCAAGCTGACCCA 61.555 61.111 0.00 0.00 38.13 4.51
7542 16097 5.361571 TCCCATCCATCATTTTCATGTTGAG 59.638 40.000 0.00 0.00 33.46 3.02
7594 16149 0.615331 AGCCTGCATTCTTCTTCGGA 59.385 50.000 0.00 0.00 0.00 4.55
7621 16176 1.004918 AAACTCACCTTCTCCGCCG 60.005 57.895 0.00 0.00 0.00 6.46
7675 16230 6.881602 GGTCTGAGGTGATCTTTGAAAATACT 59.118 38.462 0.00 0.00 0.00 2.12
7785 16341 5.140454 AGTGGTTTGGAATATAATCAGGCC 58.860 41.667 0.00 0.00 0.00 5.19
7799 16355 0.463833 CAGGCCCGGTTCTTGGATAC 60.464 60.000 0.00 0.00 0.00 2.24
7863 16419 8.942338 ATATTAAGCAACTAACTCGATGAACA 57.058 30.769 0.00 0.00 0.00 3.18
7899 16455 2.764269 AGCCAGGGAGATGCTAAGTTA 58.236 47.619 0.00 0.00 32.56 2.24
7902 16458 3.071602 GCCAGGGAGATGCTAAGTTATGA 59.928 47.826 0.00 0.00 0.00 2.15
7926 16482 7.602644 TGACATACAAAAGGTCTCACTACATTC 59.397 37.037 0.00 0.00 32.84 2.67
7930 16486 6.053005 ACAAAAGGTCTCACTACATTCGAAA 58.947 36.000 0.00 0.00 0.00 3.46
7963 16519 7.989741 CAGAGTCTGATTAGGGTACATCAAATT 59.010 37.037 15.46 0.00 32.44 1.82
7964 16520 7.989741 AGAGTCTGATTAGGGTACATCAAATTG 59.010 37.037 0.00 0.00 0.00 2.32
7985 16541 3.493129 TGATATGTGCCGTTAAATCGAGC 59.507 43.478 0.00 0.00 0.00 5.03
7991 16547 2.187707 GCCGTTAAATCGAGCGAACTA 58.812 47.619 0.00 0.00 0.00 2.24
7998 16554 1.945387 ATCGAGCGAACTAGACGGTA 58.055 50.000 15.46 5.43 41.38 4.02
8006 16562 3.181503 GCGAACTAGACGGTACAGATTCA 60.182 47.826 0.00 0.00 0.00 2.57
8016 16572 6.971184 AGACGGTACAGATTCATTTTACTACG 59.029 38.462 0.00 0.00 0.00 3.51
8024 16590 9.982651 ACAGATTCATTTTACTACGCATAGTAT 57.017 29.630 0.00 0.00 42.31 2.12
8026 16592 9.424319 AGATTCATTTTACTACGCATAGTATGG 57.576 33.333 12.07 4.92 42.31 2.74
8030 16596 2.688902 ACTACGCATAGTATGGGGGA 57.311 50.000 25.78 15.02 46.33 4.81
8031 16597 3.185880 ACTACGCATAGTATGGGGGAT 57.814 47.619 25.78 11.66 46.33 3.85
8049 16625 6.273260 TGGGGGATATTTTCATTTTCAAACCA 59.727 34.615 0.00 0.00 0.00 3.67
8092 16668 3.964411 AGTAGTCCAAGGGTAAAATGGC 58.036 45.455 0.00 0.00 34.13 4.40
8093 16669 2.990740 AGTCCAAGGGTAAAATGGCA 57.009 45.000 0.00 0.00 34.13 4.92
8132 16709 5.524971 TTGAGTCAAAACGTTCTCCTCTA 57.475 39.130 2.20 0.00 0.00 2.43
8134 16711 4.236147 GAGTCAAAACGTTCTCCTCTACC 58.764 47.826 0.00 0.00 0.00 3.18
8135 16712 3.006644 AGTCAAAACGTTCTCCTCTACCC 59.993 47.826 0.00 0.00 0.00 3.69
8136 16713 2.967201 TCAAAACGTTCTCCTCTACCCA 59.033 45.455 0.00 0.00 0.00 4.51
8156 16733 2.348665 GTGTCGTCCTACACTGGGT 58.651 57.895 0.00 0.00 45.12 4.51
8249 16826 2.041819 CCTCTCCCCGGCCTACTT 60.042 66.667 0.00 0.00 0.00 2.24
8260 16837 3.306780 CCCGGCCTACTTGAAGTATATGG 60.307 52.174 5.39 5.23 29.08 2.74
8301 16880 3.935818 TTCGGATGGGCCTTTAACATA 57.064 42.857 4.53 0.00 0.00 2.29
8318 16897 3.417101 ACATACCGAAAAGGCACATTGA 58.583 40.909 0.00 0.00 46.52 2.57
8329 16908 6.403866 AAAGGCACATTGAACTGTAAATGA 57.596 33.333 17.92 0.00 37.26 2.57
8421 17000 2.955614 ACGGACCGTCAACATTCTAAG 58.044 47.619 15.37 0.00 33.69 2.18
8432 17011 5.289675 GTCAACATTCTAAGAGACACATCGG 59.710 44.000 0.00 0.00 0.00 4.18
8435 17014 1.112113 TCTAAGAGACACATCGGGCC 58.888 55.000 0.00 0.00 0.00 5.80
8589 17175 1.102978 GTCAATGGGCCGCAACTATT 58.897 50.000 0.00 0.00 0.00 1.73
8592 17178 1.682854 CAATGGGCCGCAACTATTGAT 59.317 47.619 6.22 0.00 32.05 2.57
8607 17193 9.013229 GCAACTATTGATGGACCATAATAATGA 57.987 33.333 7.05 0.00 34.84 2.57
8685 17271 2.806945 TGGATCCAGGCTTTAAGTGG 57.193 50.000 11.44 0.00 0.00 4.00
8701 17287 1.180029 GTGGGTCATCTGCAAGCATT 58.820 50.000 0.00 0.00 0.00 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.489329 CGGACTCATTGCCAAAATGTCT 59.511 45.455 6.90 0.00 0.00 3.41
18 19 3.664025 CTCGCCGGACTCATTGCCA 62.664 63.158 5.05 0.00 0.00 4.92
268 276 1.840650 CTCCCTCGCCTCCATGGAT 60.841 63.158 16.63 0.00 38.35 3.41
279 287 4.760047 CCAACGCCACCTCCCTCG 62.760 72.222 0.00 0.00 0.00 4.63
486 494 2.630592 GAACATCTCCTCGTCCCGGC 62.631 65.000 0.00 0.00 0.00 6.13
493 501 0.250234 TGCCCAAGAACATCTCCTCG 59.750 55.000 0.00 0.00 0.00 4.63
551 559 1.358759 CCAACTTCACGGCCAACAC 59.641 57.895 2.24 0.00 0.00 3.32
650 658 0.108585 AACACAATGAGCCACCTCGT 59.891 50.000 0.00 0.00 41.13 4.18
726 734 4.217983 ACTCGGTCTCCAGTAGTAAAAGTG 59.782 45.833 0.00 0.00 0.00 3.16
727 735 4.217983 CACTCGGTCTCCAGTAGTAAAAGT 59.782 45.833 0.00 0.00 0.00 2.66
729 737 3.508793 CCACTCGGTCTCCAGTAGTAAAA 59.491 47.826 0.00 0.00 0.00 1.52
730 738 3.087031 CCACTCGGTCTCCAGTAGTAAA 58.913 50.000 0.00 0.00 0.00 2.01
731 739 2.306805 TCCACTCGGTCTCCAGTAGTAA 59.693 50.000 0.00 0.00 0.00 2.24
732 740 1.911357 TCCACTCGGTCTCCAGTAGTA 59.089 52.381 0.00 0.00 0.00 1.82
734 742 1.065345 TCTCCACTCGGTCTCCAGTAG 60.065 57.143 0.00 0.00 0.00 2.57
749 757 1.006043 AGTCCATCTTCTCGGTCTCCA 59.994 52.381 0.00 0.00 0.00 3.86
750 758 1.407258 CAGTCCATCTTCTCGGTCTCC 59.593 57.143 0.00 0.00 0.00 3.71
752 760 2.096248 GTCAGTCCATCTTCTCGGTCT 58.904 52.381 0.00 0.00 0.00 3.85
753 761 2.096248 AGTCAGTCCATCTTCTCGGTC 58.904 52.381 0.00 0.00 0.00 4.79
754 762 1.821753 CAGTCAGTCCATCTTCTCGGT 59.178 52.381 0.00 0.00 0.00 4.69
755 763 1.470632 GCAGTCAGTCCATCTTCTCGG 60.471 57.143 0.00 0.00 0.00 4.63
756 764 1.470632 GGCAGTCAGTCCATCTTCTCG 60.471 57.143 0.00 0.00 0.00 4.04
758 766 0.908198 GGGCAGTCAGTCCATCTTCT 59.092 55.000 0.00 0.00 43.39 2.85
759 767 0.460987 CGGGCAGTCAGTCCATCTTC 60.461 60.000 0.00 0.00 44.49 2.87
760 768 1.194781 ACGGGCAGTCAGTCCATCTT 61.195 55.000 0.00 0.00 44.49 2.40
761 769 1.610673 ACGGGCAGTCAGTCCATCT 60.611 57.895 0.00 0.00 44.49 2.90
762 770 2.982130 ACGGGCAGTCAGTCCATC 59.018 61.111 0.00 0.00 44.49 3.51
811 819 3.503748 AGTGCAGTAGAAATTGGCAACTC 59.496 43.478 0.00 2.19 36.08 3.01
832 840 1.410882 GGGGCTCTTGCAGTAGAGTAG 59.589 57.143 15.22 0.00 42.93 2.57
833 841 1.007238 AGGGGCTCTTGCAGTAGAGTA 59.993 52.381 15.22 0.00 42.93 2.59
835 843 1.781786 TAGGGGCTCTTGCAGTAGAG 58.218 55.000 10.54 10.54 43.66 2.43
836 844 1.831736 GTTAGGGGCTCTTGCAGTAGA 59.168 52.381 0.00 0.00 41.91 2.59
838 846 0.909623 GGTTAGGGGCTCTTGCAGTA 59.090 55.000 0.00 0.00 41.91 2.74
839 847 1.685820 GGTTAGGGGCTCTTGCAGT 59.314 57.895 0.00 0.00 41.91 4.40
840 848 1.077429 GGGTTAGGGGCTCTTGCAG 60.077 63.158 0.00 0.00 41.91 4.41
843 851 1.221021 GTCGGGTTAGGGGCTCTTG 59.779 63.158 0.00 0.00 0.00 3.02
972 996 4.703379 TCCGGAAACAAAAAGGGTACTA 57.297 40.909 0.00 0.00 0.00 1.82
985 1009 0.388520 GCCATGCAACTTCCGGAAAC 60.389 55.000 19.39 8.66 0.00 2.78
1056 1113 3.452474 CAGAAAGCGGAAGAGATGGTAG 58.548 50.000 0.00 0.00 0.00 3.18
1057 1114 2.418746 GCAGAAAGCGGAAGAGATGGTA 60.419 50.000 0.00 0.00 0.00 3.25
1058 1115 1.677217 GCAGAAAGCGGAAGAGATGGT 60.677 52.381 0.00 0.00 0.00 3.55
1059 1116 1.012841 GCAGAAAGCGGAAGAGATGG 58.987 55.000 0.00 0.00 0.00 3.51
1507 1567 3.308705 GAGGTTCCCCACGTCCGT 61.309 66.667 0.00 0.00 34.67 4.69
1517 1577 2.352805 CTGGGGCTGTGAGGTTCC 59.647 66.667 0.00 0.00 0.00 3.62
2004 2086 1.063616 CTGCATCGAAGTCAGCATTGG 59.936 52.381 0.00 0.00 36.28 3.16
2006 2088 1.376543 CCTGCATCGAAGTCAGCATT 58.623 50.000 0.00 0.00 36.28 3.56
2008 2090 1.078918 CCCTGCATCGAAGTCAGCA 60.079 57.895 0.00 0.00 35.43 4.41
2009 2091 0.809241 CTCCCTGCATCGAAGTCAGC 60.809 60.000 0.00 0.00 0.00 4.26
2010 2092 0.179089 CCTCCCTGCATCGAAGTCAG 60.179 60.000 0.00 0.00 0.00 3.51
2014 2096 1.661341 CTTTCCTCCCTGCATCGAAG 58.339 55.000 0.00 0.00 0.00 3.79
2018 2100 0.182299 CTCCCTTTCCTCCCTGCATC 59.818 60.000 0.00 0.00 0.00 3.91
2115 2197 2.586425 TCTTGGCCTTTCTTGTCTTGG 58.414 47.619 3.32 0.00 0.00 3.61
2121 2203 2.559668 TCATGCTTCTTGGCCTTTCTTG 59.440 45.455 3.32 0.00 0.00 3.02
2159 2241 4.037208 CAGTTCTTTGAGCAATTGACCAGT 59.963 41.667 10.34 0.00 0.00 4.00
2160 2242 4.543692 CAGTTCTTTGAGCAATTGACCAG 58.456 43.478 10.34 2.04 0.00 4.00
2161 2243 3.318839 CCAGTTCTTTGAGCAATTGACCA 59.681 43.478 10.34 2.72 0.00 4.02
2162 2244 3.569701 TCCAGTTCTTTGAGCAATTGACC 59.430 43.478 10.34 0.00 0.00 4.02
2178 2264 9.712305 GATAGTGCACACTAATAATATCCAGTT 57.288 33.333 21.04 0.00 45.87 3.16
2194 2280 4.690280 CACACACACATAAGATAGTGCACA 59.310 41.667 21.04 5.47 39.30 4.57
2195 2281 4.093408 CCACACACACATAAGATAGTGCAC 59.907 45.833 9.40 9.40 39.30 4.57
2196 2282 4.020662 TCCACACACACATAAGATAGTGCA 60.021 41.667 0.00 0.00 39.30 4.57
2197 2283 4.503910 TCCACACACACATAAGATAGTGC 58.496 43.478 0.00 0.00 39.30 4.40
2198 2284 5.931724 TGTTCCACACACACATAAGATAGTG 59.068 40.000 0.00 0.00 41.40 2.74
2199 2285 6.109156 TGTTCCACACACACATAAGATAGT 57.891 37.500 0.00 0.00 0.00 2.12
2200 2286 5.063944 GCTGTTCCACACACACATAAGATAG 59.936 44.000 0.00 0.00 0.00 2.08
2201 2287 4.935205 GCTGTTCCACACACACATAAGATA 59.065 41.667 0.00 0.00 0.00 1.98
2240 2339 3.381908 CGTAGATAGTGCACTTCCCTCTT 59.618 47.826 27.06 8.46 0.00 2.85
2243 2342 3.014304 TCGTAGATAGTGCACTTCCCT 57.986 47.619 27.06 20.22 0.00 4.20
2309 2408 0.890996 AACCGCCTTCTCCAAGCTTG 60.891 55.000 19.93 19.93 0.00 4.01
2352 2455 1.471684 CTGCATTCTCCAAGCTTGTCC 59.528 52.381 24.35 5.66 0.00 4.02
2516 2621 2.754552 TGCCAATACCAGCACTTCATTC 59.245 45.455 0.00 0.00 33.08 2.67
2659 2958 2.575279 AGATGTGAGTGGAAAGGATGCT 59.425 45.455 0.00 0.00 0.00 3.79
2823 5142 6.267928 GGAGCTCATATTAGTTTACAGAGGGA 59.732 42.308 17.19 0.00 0.00 4.20
2824 5143 6.268847 AGGAGCTCATATTAGTTTACAGAGGG 59.731 42.308 17.19 0.00 0.00 4.30
2825 5144 7.296628 AGGAGCTCATATTAGTTTACAGAGG 57.703 40.000 17.19 0.00 0.00 3.69
2828 5147 9.817809 TGTAAAGGAGCTCATATTAGTTTACAG 57.182 33.333 17.19 0.00 35.35 2.74
2829 5148 9.817809 CTGTAAAGGAGCTCATATTAGTTTACA 57.182 33.333 17.19 16.47 37.00 2.41
2830 5149 9.819267 ACTGTAAAGGAGCTCATATTAGTTTAC 57.181 33.333 17.19 12.88 32.31 2.01
2832 5151 9.819267 GTACTGTAAAGGAGCTCATATTAGTTT 57.181 33.333 17.19 0.68 0.00 2.66
2833 5152 8.422566 GGTACTGTAAAGGAGCTCATATTAGTT 58.577 37.037 17.19 1.47 0.00 2.24
2834 5153 7.015389 GGGTACTGTAAAGGAGCTCATATTAGT 59.985 40.741 17.19 13.18 0.00 2.24
2835 5154 7.379750 GGGTACTGTAAAGGAGCTCATATTAG 58.620 42.308 17.19 8.03 0.00 1.73
2836 5155 6.269307 GGGGTACTGTAAAGGAGCTCATATTA 59.731 42.308 17.19 8.40 0.00 0.98
2837 5156 5.071923 GGGGTACTGTAAAGGAGCTCATATT 59.928 44.000 17.19 9.40 0.00 1.28
2838 5157 4.593634 GGGGTACTGTAAAGGAGCTCATAT 59.406 45.833 17.19 2.71 0.00 1.78
2995 8291 8.021396 GCACCGATGGGAGAATAATAATAAAAC 58.979 37.037 0.00 0.00 36.97 2.43
3251 8577 0.179127 CGCGAGAAAGATGGCTCTCA 60.179 55.000 0.00 0.00 38.40 3.27
3276 8602 1.676014 CGGGCGAGTTTCCAGAATTCT 60.676 52.381 0.88 0.88 0.00 2.40
3340 8669 2.430694 CACGTGATAGATCTCCACCCAA 59.569 50.000 10.90 0.00 0.00 4.12
3361 8690 1.969923 AGATATCAGGCTGGAGTGCTC 59.030 52.381 15.73 3.78 0.00 4.26
3418 8860 4.122776 GTGGAATACACGCAAGAGATCAT 58.877 43.478 0.00 0.00 40.85 2.45
3470 8917 8.438513 CACACAAAATCTCTAACATGTACTCAG 58.561 37.037 0.00 0.00 0.00 3.35
3685 9662 3.852578 ACCACTTAAATCTGACCCTCCAT 59.147 43.478 0.00 0.00 0.00 3.41
3803 9780 9.661954 TCTCCCTTCTAACATTTAGATCACTAT 57.338 33.333 0.00 0.00 0.00 2.12
3804 9781 9.137459 CTCTCCCTTCTAACATTTAGATCACTA 57.863 37.037 0.00 0.00 0.00 2.74
3805 9782 7.841729 TCTCTCCCTTCTAACATTTAGATCACT 59.158 37.037 0.00 0.00 0.00 3.41
3806 9783 8.012957 TCTCTCCCTTCTAACATTTAGATCAC 57.987 38.462 0.00 0.00 0.00 3.06
3807 9784 8.061920 TCTCTCTCCCTTCTAACATTTAGATCA 58.938 37.037 0.00 0.00 0.00 2.92
3808 9785 8.472007 TCTCTCTCCCTTCTAACATTTAGATC 57.528 38.462 0.00 0.00 0.00 2.75
3809 9786 7.508977 CCTCTCTCTCCCTTCTAACATTTAGAT 59.491 40.741 0.00 0.00 0.00 1.98
3810 9787 6.836527 CCTCTCTCTCCCTTCTAACATTTAGA 59.163 42.308 0.00 0.00 0.00 2.10
3811 9788 6.836527 TCCTCTCTCTCCCTTCTAACATTTAG 59.163 42.308 0.00 0.00 0.00 1.85
3812 9789 6.742756 TCCTCTCTCTCCCTTCTAACATTTA 58.257 40.000 0.00 0.00 0.00 1.40
3813 9790 5.594777 TCCTCTCTCTCCCTTCTAACATTT 58.405 41.667 0.00 0.00 0.00 2.32
3814 9791 5.213868 TCCTCTCTCTCCCTTCTAACATT 57.786 43.478 0.00 0.00 0.00 2.71
3815 9792 4.890499 TCCTCTCTCTCCCTTCTAACAT 57.110 45.455 0.00 0.00 0.00 2.71
4058 10055 2.214181 GATGTCAGTCCGTCGGCTGT 62.214 60.000 25.10 13.25 34.57 4.40
4641 10648 1.369091 GATGGACGCCGCAATTGTCT 61.369 55.000 7.40 0.00 33.21 3.41
4802 10825 3.486252 CTACCTCCGTAGCCGCTGC 62.486 68.421 2.16 0.00 35.83 5.25
4803 10826 2.722487 CTACCTCCGTAGCCGCTG 59.278 66.667 2.16 0.00 35.83 5.18
4809 10832 3.962421 CCGCCGCTACCTCCGTAG 61.962 72.222 0.00 0.00 44.24 3.51
4964 11078 0.381089 GTCGACCTCTCGTGGTATGG 59.619 60.000 3.51 0.00 41.00 2.74
5121 11244 0.822121 GCCGTTGTGTCTCCCCTTTT 60.822 55.000 0.00 0.00 0.00 2.27
5122 11245 1.228154 GCCGTTGTGTCTCCCCTTT 60.228 57.895 0.00 0.00 0.00 3.11
5129 11252 2.660552 CGAACCGCCGTTGTGTCT 60.661 61.111 0.00 0.00 30.30 3.41
5314 11827 0.751643 TCTCCACCGATCGAGCATCA 60.752 55.000 18.66 0.00 33.17 3.07
5337 11850 4.052229 CGTCCCCGAGTTCAGCGT 62.052 66.667 0.00 0.00 35.63 5.07
5782 13662 2.943345 GCGACGGCCAATCATAGCG 61.943 63.158 2.24 0.00 0.00 4.26
6067 14305 1.076559 TCTCCCGCCGGTCATCTTA 60.077 57.895 1.90 0.00 0.00 2.10
6449 14869 6.610425 ACGGAGGGAGTAATATAAGAGTGTTT 59.390 38.462 0.00 0.00 0.00 2.83
6450 14870 6.134754 ACGGAGGGAGTAATATAAGAGTGTT 58.865 40.000 0.00 0.00 0.00 3.32
6451 14871 5.703310 ACGGAGGGAGTAATATAAGAGTGT 58.297 41.667 0.00 0.00 0.00 3.55
6452 14872 6.294620 GGAACGGAGGGAGTAATATAAGAGTG 60.295 46.154 0.00 0.00 0.00 3.51
6453 14873 5.774184 GGAACGGAGGGAGTAATATAAGAGT 59.226 44.000 0.00 0.00 0.00 3.24
6454 14874 5.773680 TGGAACGGAGGGAGTAATATAAGAG 59.226 44.000 0.00 0.00 0.00 2.85
6455 14875 5.708544 TGGAACGGAGGGAGTAATATAAGA 58.291 41.667 0.00 0.00 0.00 2.10
6456 14876 6.415206 TTGGAACGGAGGGAGTAATATAAG 57.585 41.667 0.00 0.00 0.00 1.73
6457 14877 6.811634 TTTGGAACGGAGGGAGTAATATAA 57.188 37.500 0.00 0.00 0.00 0.98
6458 14878 6.811634 TTTTGGAACGGAGGGAGTAATATA 57.188 37.500 0.00 0.00 0.00 0.86
6459 14879 5.703730 TTTTGGAACGGAGGGAGTAATAT 57.296 39.130 0.00 0.00 0.00 1.28
6460 14880 5.703730 ATTTTGGAACGGAGGGAGTAATA 57.296 39.130 0.00 0.00 0.00 0.98
6461 14881 4.586306 ATTTTGGAACGGAGGGAGTAAT 57.414 40.909 0.00 0.00 0.00 1.89
6462 14882 4.778958 TCTATTTTGGAACGGAGGGAGTAA 59.221 41.667 0.00 0.00 0.00 2.24
6463 14883 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
6464 14884 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
6465 14885 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
6466 14886 3.118038 CCATCTATTTTGGAACGGAGGGA 60.118 47.826 0.00 0.00 36.26 4.20
6467 14887 3.214328 CCATCTATTTTGGAACGGAGGG 58.786 50.000 0.00 0.00 36.26 4.30
6468 14888 2.618709 GCCATCTATTTTGGAACGGAGG 59.381 50.000 0.00 0.00 36.26 4.30
6469 14889 3.545703 AGCCATCTATTTTGGAACGGAG 58.454 45.455 0.00 0.00 36.26 4.63
6470 14890 3.054728 TGAGCCATCTATTTTGGAACGGA 60.055 43.478 0.00 0.00 36.26 4.69
6471 14891 3.278574 TGAGCCATCTATTTTGGAACGG 58.721 45.455 0.00 0.00 36.26 4.44
6472 14892 4.396166 AGTTGAGCCATCTATTTTGGAACG 59.604 41.667 0.00 0.00 36.26 3.95
6473 14893 5.904362 AGTTGAGCCATCTATTTTGGAAC 57.096 39.130 0.00 0.00 36.26 3.62
6474 14894 6.267471 ACAAAGTTGAGCCATCTATTTTGGAA 59.733 34.615 10.53 0.00 40.00 3.53
6475 14895 5.774690 ACAAAGTTGAGCCATCTATTTTGGA 59.225 36.000 10.53 0.00 40.00 3.53
6476 14896 6.029346 ACAAAGTTGAGCCATCTATTTTGG 57.971 37.500 10.53 0.00 40.00 3.28
6477 14897 7.820648 AGTACAAAGTTGAGCCATCTATTTTG 58.179 34.615 0.00 6.27 40.82 2.44
6478 14898 9.515226 TTAGTACAAAGTTGAGCCATCTATTTT 57.485 29.630 0.00 0.00 0.00 1.82
6479 14899 8.947115 GTTAGTACAAAGTTGAGCCATCTATTT 58.053 33.333 0.00 0.00 0.00 1.40
6480 14900 8.322091 AGTTAGTACAAAGTTGAGCCATCTATT 58.678 33.333 0.00 0.00 0.00 1.73
6481 14901 7.852263 AGTTAGTACAAAGTTGAGCCATCTAT 58.148 34.615 0.00 0.00 0.00 1.98
6482 14902 7.241042 AGTTAGTACAAAGTTGAGCCATCTA 57.759 36.000 0.00 0.00 0.00 1.98
6483 14903 6.115448 AGTTAGTACAAAGTTGAGCCATCT 57.885 37.500 0.00 0.00 0.00 2.90
6484 14904 9.595823 TTATAGTTAGTACAAAGTTGAGCCATC 57.404 33.333 0.00 0.00 0.00 3.51
6516 14936 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
6517 14937 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
6518 14938 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
6519 14939 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
6520 14940 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
6521 14941 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
6522 14942 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
6523 14943 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
6524 14944 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
6525 14945 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
6526 14946 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
6527 14947 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
6528 14948 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
6529 14949 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
6530 14950 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
6531 14951 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
6532 14952 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
6533 14953 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
6534 14954 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
6535 14955 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
6536 14956 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
6537 14957 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
6538 14958 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
6539 14959 2.019807 AACTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
6540 14960 2.019807 AAACTACTCCCTCCGTTCCA 57.980 50.000 0.00 0.00 0.00 3.53
6541 14961 2.827921 TGTAAACTACTCCCTCCGTTCC 59.172 50.000 0.00 0.00 0.00 3.62
6542 14962 3.760684 TCTGTAAACTACTCCCTCCGTTC 59.239 47.826 0.00 0.00 0.00 3.95
6543 14963 3.762823 CTCTGTAAACTACTCCCTCCGTT 59.237 47.826 0.00 0.00 0.00 4.44
6544 14964 3.354467 CTCTGTAAACTACTCCCTCCGT 58.646 50.000 0.00 0.00 0.00 4.69
6545 14965 2.688958 CCTCTGTAAACTACTCCCTCCG 59.311 54.545 0.00 0.00 0.00 4.63
6546 14966 3.032459 CCCTCTGTAAACTACTCCCTCC 58.968 54.545 0.00 0.00 0.00 4.30
6547 14967 3.955551 CTCCCTCTGTAAACTACTCCCTC 59.044 52.174 0.00 0.00 0.00 4.30
6548 14968 3.337301 ACTCCCTCTGTAAACTACTCCCT 59.663 47.826 0.00 0.00 0.00 4.20
6549 14969 3.710724 ACTCCCTCTGTAAACTACTCCC 58.289 50.000 0.00 0.00 0.00 4.30
6550 14970 4.644234 GGTACTCCCTCTGTAAACTACTCC 59.356 50.000 0.00 0.00 0.00 3.85
6551 14971 5.508567 AGGTACTCCCTCTGTAAACTACTC 58.491 45.833 0.00 0.00 40.71 2.59
6552 14972 5.533333 AGGTACTCCCTCTGTAAACTACT 57.467 43.478 0.00 0.00 40.71 2.57
6553 14973 5.951148 AGAAGGTACTCCCTCTGTAAACTAC 59.049 44.000 0.00 0.00 45.47 2.73
6554 14974 6.150034 AGAAGGTACTCCCTCTGTAAACTA 57.850 41.667 0.00 0.00 45.47 2.24
6555 14975 5.013258 AGAAGGTACTCCCTCTGTAAACT 57.987 43.478 0.00 0.00 45.47 2.66
6556 14976 5.741962 AAGAAGGTACTCCCTCTGTAAAC 57.258 43.478 0.00 0.00 45.47 2.01
6557 14977 7.860649 TTAAAGAAGGTACTCCCTCTGTAAA 57.139 36.000 0.00 0.00 45.47 2.01
6558 14978 9.198475 CTATTAAAGAAGGTACTCCCTCTGTAA 57.802 37.037 0.00 0.00 45.47 2.41
6559 14979 8.342270 ACTATTAAAGAAGGTACTCCCTCTGTA 58.658 37.037 0.00 0.00 45.47 2.74
6560 14980 7.190501 ACTATTAAAGAAGGTACTCCCTCTGT 58.809 38.462 0.00 0.00 45.47 3.41
6561 14981 7.342284 TGACTATTAAAGAAGGTACTCCCTCTG 59.658 40.741 0.00 0.00 45.47 3.35
6562 14982 7.420029 TGACTATTAAAGAAGGTACTCCCTCT 58.580 38.462 0.00 0.00 45.47 3.69
6563 14983 7.657023 TGACTATTAAAGAAGGTACTCCCTC 57.343 40.000 0.00 0.00 45.47 4.30
6565 14985 8.483758 TGAATGACTATTAAAGAAGGTACTCCC 58.516 37.037 0.00 0.00 38.49 4.30
6582 15002 9.836864 AAATGCTACAGTGATTATGAATGACTA 57.163 29.630 0.00 0.00 32.85 2.59
6583 15003 8.743085 AAATGCTACAGTGATTATGAATGACT 57.257 30.769 0.00 0.00 35.66 3.41
6584 15004 8.834465 AGAAATGCTACAGTGATTATGAATGAC 58.166 33.333 0.00 0.00 0.00 3.06
6585 15005 8.833493 CAGAAATGCTACAGTGATTATGAATGA 58.167 33.333 0.00 0.00 0.00 2.57
6586 15006 8.074370 CCAGAAATGCTACAGTGATTATGAATG 58.926 37.037 0.00 0.00 0.00 2.67
6587 15007 7.994911 TCCAGAAATGCTACAGTGATTATGAAT 59.005 33.333 0.00 0.00 0.00 2.57
6588 15008 7.337938 TCCAGAAATGCTACAGTGATTATGAA 58.662 34.615 0.00 0.00 0.00 2.57
6589 15009 6.888105 TCCAGAAATGCTACAGTGATTATGA 58.112 36.000 0.00 0.00 0.00 2.15
6590 15010 7.558161 TTCCAGAAATGCTACAGTGATTATG 57.442 36.000 0.00 0.00 0.00 1.90
6591 15011 7.284034 CCTTTCCAGAAATGCTACAGTGATTAT 59.716 37.037 0.00 0.00 0.00 1.28
6592 15012 6.599244 CCTTTCCAGAAATGCTACAGTGATTA 59.401 38.462 0.00 0.00 0.00 1.75
6593 15013 5.416952 CCTTTCCAGAAATGCTACAGTGATT 59.583 40.000 0.00 0.00 0.00 2.57
6594 15014 4.946157 CCTTTCCAGAAATGCTACAGTGAT 59.054 41.667 0.00 0.00 0.00 3.06
6595 15015 4.041567 TCCTTTCCAGAAATGCTACAGTGA 59.958 41.667 0.00 0.00 0.00 3.41
6596 15016 4.326826 TCCTTTCCAGAAATGCTACAGTG 58.673 43.478 0.00 0.00 0.00 3.66
6597 15017 4.640771 TCCTTTCCAGAAATGCTACAGT 57.359 40.909 0.00 0.00 0.00 3.55
6598 15018 5.006386 ACTTCCTTTCCAGAAATGCTACAG 58.994 41.667 0.00 0.00 0.00 2.74
6599 15019 4.985538 ACTTCCTTTCCAGAAATGCTACA 58.014 39.130 0.00 0.00 0.00 2.74
6600 15020 5.703876 CAACTTCCTTTCCAGAAATGCTAC 58.296 41.667 0.00 0.00 0.00 3.58
6601 15021 4.218417 GCAACTTCCTTTCCAGAAATGCTA 59.782 41.667 6.81 0.00 35.16 3.49
6602 15022 3.006217 GCAACTTCCTTTCCAGAAATGCT 59.994 43.478 6.81 0.00 35.16 3.79
6603 15023 3.006217 AGCAACTTCCTTTCCAGAAATGC 59.994 43.478 6.18 6.18 36.84 3.56
6604 15024 4.861102 AGCAACTTCCTTTCCAGAAATG 57.139 40.909 0.00 0.00 0.00 2.32
6605 15025 5.385198 TGTAGCAACTTCCTTTCCAGAAAT 58.615 37.500 0.00 0.00 0.00 2.17
6606 15026 4.787551 TGTAGCAACTTCCTTTCCAGAAA 58.212 39.130 0.00 0.00 0.00 2.52
6607 15027 4.389374 CTGTAGCAACTTCCTTTCCAGAA 58.611 43.478 0.00 0.00 0.00 3.02
6608 15028 3.244561 CCTGTAGCAACTTCCTTTCCAGA 60.245 47.826 0.00 0.00 0.00 3.86
6609 15029 3.077359 CCTGTAGCAACTTCCTTTCCAG 58.923 50.000 0.00 0.00 0.00 3.86
6610 15030 2.441750 ACCTGTAGCAACTTCCTTTCCA 59.558 45.455 0.00 0.00 0.00 3.53
6611 15031 3.075148 GACCTGTAGCAACTTCCTTTCC 58.925 50.000 0.00 0.00 0.00 3.13
6612 15032 3.740115 TGACCTGTAGCAACTTCCTTTC 58.260 45.455 0.00 0.00 0.00 2.62
6613 15033 3.857157 TGACCTGTAGCAACTTCCTTT 57.143 42.857 0.00 0.00 0.00 3.11
6614 15034 4.624125 GCTATGACCTGTAGCAACTTCCTT 60.624 45.833 0.60 0.00 43.12 3.36
6615 15035 3.118592 GCTATGACCTGTAGCAACTTCCT 60.119 47.826 0.60 0.00 43.12 3.36
6616 15036 3.198872 GCTATGACCTGTAGCAACTTCC 58.801 50.000 0.60 0.00 43.12 3.46
6617 15037 2.860735 CGCTATGACCTGTAGCAACTTC 59.139 50.000 6.04 0.00 43.65 3.01
6618 15038 2.233922 ACGCTATGACCTGTAGCAACTT 59.766 45.455 6.04 0.00 43.65 2.66
6619 15039 1.825474 ACGCTATGACCTGTAGCAACT 59.175 47.619 6.04 0.00 43.65 3.16
6620 15040 2.295253 ACGCTATGACCTGTAGCAAC 57.705 50.000 6.04 0.00 43.65 4.17
6621 15041 4.581409 TGTATACGCTATGACCTGTAGCAA 59.419 41.667 6.04 0.00 43.65 3.91
6622 15042 4.139038 TGTATACGCTATGACCTGTAGCA 58.861 43.478 6.04 0.00 43.65 3.49
6623 15043 4.215827 ACTGTATACGCTATGACCTGTAGC 59.784 45.833 0.00 0.00 40.83 3.58
6624 15044 5.943706 ACTGTATACGCTATGACCTGTAG 57.056 43.478 0.00 0.00 0.00 2.74
6625 15045 7.219322 TCTAACTGTATACGCTATGACCTGTA 58.781 38.462 0.00 0.00 0.00 2.74
6626 15046 6.060136 TCTAACTGTATACGCTATGACCTGT 58.940 40.000 0.00 0.00 0.00 4.00
6627 15047 6.555812 TCTAACTGTATACGCTATGACCTG 57.444 41.667 0.00 0.00 0.00 4.00
6628 15048 7.762588 AATCTAACTGTATACGCTATGACCT 57.237 36.000 0.00 0.00 0.00 3.85
6629 15049 8.728833 ACTAATCTAACTGTATACGCTATGACC 58.271 37.037 0.00 0.00 0.00 4.02
6630 15050 9.544314 CACTAATCTAACTGTATACGCTATGAC 57.456 37.037 0.00 0.00 0.00 3.06
6631 15051 8.235226 GCACTAATCTAACTGTATACGCTATGA 58.765 37.037 0.00 0.00 0.00 2.15
6632 15052 8.021396 TGCACTAATCTAACTGTATACGCTATG 58.979 37.037 0.00 0.00 0.00 2.23
6633 15053 8.107399 TGCACTAATCTAACTGTATACGCTAT 57.893 34.615 0.00 0.00 0.00 2.97
6634 15054 7.500720 TGCACTAATCTAACTGTATACGCTA 57.499 36.000 0.00 0.00 0.00 4.26
6635 15055 6.387041 TGCACTAATCTAACTGTATACGCT 57.613 37.500 0.00 0.00 0.00 5.07
6636 15056 7.169308 ACATTGCACTAATCTAACTGTATACGC 59.831 37.037 0.00 0.00 0.00 4.42
6637 15057 8.575565 ACATTGCACTAATCTAACTGTATACG 57.424 34.615 0.00 0.00 0.00 3.06
6641 15061 9.884636 AATGTACATTGCACTAATCTAACTGTA 57.115 29.630 20.19 0.00 0.00 2.74
6642 15062 8.792830 AATGTACATTGCACTAATCTAACTGT 57.207 30.769 20.19 0.00 0.00 3.55
6643 15063 9.102757 AGAATGTACATTGCACTAATCTAACTG 57.897 33.333 25.42 0.00 0.00 3.16
6644 15064 9.102757 CAGAATGTACATTGCACTAATCTAACT 57.897 33.333 25.42 8.55 0.00 2.24
6661 15081 8.448615 GTAATTCCTTACACCAACAGAATGTAC 58.551 37.037 0.00 0.00 42.27 2.90
6662 15082 8.380099 AGTAATTCCTTACACCAACAGAATGTA 58.620 33.333 0.00 0.00 43.92 2.29
6663 15083 7.174946 CAGTAATTCCTTACACCAACAGAATGT 59.825 37.037 0.00 0.00 45.45 2.71
6664 15084 7.390440 TCAGTAATTCCTTACACCAACAGAATG 59.610 37.037 0.00 0.00 39.81 2.67
6665 15085 7.458397 TCAGTAATTCCTTACACCAACAGAAT 58.542 34.615 0.00 0.00 39.81 2.40
6666 15086 6.833041 TCAGTAATTCCTTACACCAACAGAA 58.167 36.000 0.00 0.00 39.81 3.02
6667 15087 6.428083 TCAGTAATTCCTTACACCAACAGA 57.572 37.500 0.00 0.00 39.81 3.41
6668 15088 6.710744 ACTTCAGTAATTCCTTACACCAACAG 59.289 38.462 0.00 0.00 39.81 3.16
6669 15089 6.597562 ACTTCAGTAATTCCTTACACCAACA 58.402 36.000 0.00 0.00 39.81 3.33
6670 15090 7.506328 AACTTCAGTAATTCCTTACACCAAC 57.494 36.000 0.00 0.00 39.81 3.77
6671 15091 7.229907 GGAAACTTCAGTAATTCCTTACACCAA 59.770 37.037 3.91 0.00 39.81 3.67
6672 15092 6.713450 GGAAACTTCAGTAATTCCTTACACCA 59.287 38.462 3.91 0.00 39.81 4.17
6673 15093 6.713450 TGGAAACTTCAGTAATTCCTTACACC 59.287 38.462 10.46 0.00 41.51 4.16
6674 15094 7.739498 TGGAAACTTCAGTAATTCCTTACAC 57.261 36.000 10.46 0.00 41.51 2.90
6675 15095 8.934023 AATGGAAACTTCAGTAATTCCTTACA 57.066 30.769 10.46 0.00 41.51 2.41
6677 15097 9.174166 GCTAATGGAAACTTCAGTAATTCCTTA 57.826 33.333 10.46 6.89 41.51 2.69
6678 15098 7.669722 TGCTAATGGAAACTTCAGTAATTCCTT 59.330 33.333 10.46 3.57 41.51 3.36
6679 15099 7.175104 TGCTAATGGAAACTTCAGTAATTCCT 58.825 34.615 10.46 0.00 41.51 3.36
6680 15100 7.391148 TGCTAATGGAAACTTCAGTAATTCC 57.609 36.000 4.13 4.13 41.37 3.01
6681 15101 9.346725 CTTTGCTAATGGAAACTTCAGTAATTC 57.653 33.333 0.00 0.00 30.48 2.17
6682 15102 8.860088 ACTTTGCTAATGGAAACTTCAGTAATT 58.140 29.630 0.00 0.00 30.48 1.40
6683 15103 8.409358 ACTTTGCTAATGGAAACTTCAGTAAT 57.591 30.769 0.00 0.00 30.48 1.89
6684 15104 7.817418 ACTTTGCTAATGGAAACTTCAGTAA 57.183 32.000 0.00 0.00 30.48 2.24
6685 15105 7.817418 AACTTTGCTAATGGAAACTTCAGTA 57.183 32.000 0.00 0.00 30.48 2.74
6686 15106 6.715347 AACTTTGCTAATGGAAACTTCAGT 57.285 33.333 0.00 0.00 30.48 3.41
6687 15107 7.875971 AGTAACTTTGCTAATGGAAACTTCAG 58.124 34.615 0.00 0.00 30.48 3.02
6688 15108 7.817418 AGTAACTTTGCTAATGGAAACTTCA 57.183 32.000 0.00 0.00 30.48 3.02
6689 15109 7.955864 CGTAGTAACTTTGCTAATGGAAACTTC 59.044 37.037 0.00 0.00 30.48 3.01
6690 15110 7.443272 ACGTAGTAACTTTGCTAATGGAAACTT 59.557 33.333 0.00 0.00 41.94 2.66
6691 15111 6.932960 ACGTAGTAACTTTGCTAATGGAAACT 59.067 34.615 0.00 0.00 41.94 2.66
6692 15112 7.125536 ACGTAGTAACTTTGCTAATGGAAAC 57.874 36.000 0.00 0.00 41.94 2.78
6693 15113 8.306038 TCTACGTAGTAACTTTGCTAATGGAAA 58.694 33.333 21.53 0.00 45.13 3.13
6694 15114 7.829725 TCTACGTAGTAACTTTGCTAATGGAA 58.170 34.615 21.53 0.00 45.13 3.53
6695 15115 7.395190 TCTACGTAGTAACTTTGCTAATGGA 57.605 36.000 21.53 0.00 45.13 3.41
6696 15116 8.644318 ATTCTACGTAGTAACTTTGCTAATGG 57.356 34.615 21.53 0.00 45.13 3.16
6697 15117 9.901724 CAATTCTACGTAGTAACTTTGCTAATG 57.098 33.333 21.53 3.10 45.13 1.90
6698 15118 9.649167 ACAATTCTACGTAGTAACTTTGCTAAT 57.351 29.630 21.53 7.59 45.13 1.73
6699 15119 9.480053 AACAATTCTACGTAGTAACTTTGCTAA 57.520 29.630 21.53 5.58 45.13 3.09
6700 15120 9.132521 GAACAATTCTACGTAGTAACTTTGCTA 57.867 33.333 21.53 0.00 45.13 3.49
6701 15121 7.871463 AGAACAATTCTACGTAGTAACTTTGCT 59.129 33.333 21.53 6.14 45.13 3.91
6702 15122 8.015409 AGAACAATTCTACGTAGTAACTTTGC 57.985 34.615 21.53 7.33 45.13 3.68
6703 15123 9.408069 AGAGAACAATTCTACGTAGTAACTTTG 57.592 33.333 21.53 15.23 45.13 2.77
6721 15141 9.193133 CGAAAGATAACAAAGAGTAGAGAACAA 57.807 33.333 0.00 0.00 0.00 2.83
6722 15142 8.358148 ACGAAAGATAACAAAGAGTAGAGAACA 58.642 33.333 0.00 0.00 0.00 3.18
6723 15143 8.745464 ACGAAAGATAACAAAGAGTAGAGAAC 57.255 34.615 0.00 0.00 0.00 3.01
6724 15144 8.573885 TGACGAAAGATAACAAAGAGTAGAGAA 58.426 33.333 0.00 0.00 0.00 2.87
6725 15145 8.107399 TGACGAAAGATAACAAAGAGTAGAGA 57.893 34.615 0.00 0.00 0.00 3.10
6726 15146 8.744008 TTGACGAAAGATAACAAAGAGTAGAG 57.256 34.615 0.00 0.00 0.00 2.43
6727 15147 9.140286 CATTGACGAAAGATAACAAAGAGTAGA 57.860 33.333 0.00 0.00 0.00 2.59
6728 15148 7.900352 GCATTGACGAAAGATAACAAAGAGTAG 59.100 37.037 0.00 0.00 0.00 2.57
6729 15149 7.386573 TGCATTGACGAAAGATAACAAAGAGTA 59.613 33.333 0.00 0.00 0.00 2.59
6730 15150 6.204688 TGCATTGACGAAAGATAACAAAGAGT 59.795 34.615 0.00 0.00 0.00 3.24
6731 15151 6.602179 TGCATTGACGAAAGATAACAAAGAG 58.398 36.000 0.00 0.00 0.00 2.85
6732 15152 6.552859 TGCATTGACGAAAGATAACAAAGA 57.447 33.333 0.00 0.00 0.00 2.52
6735 15155 4.455533 AGCTGCATTGACGAAAGATAACAA 59.544 37.500 1.02 0.00 0.00 2.83
6795 15215 6.649557 CCCAGTTTAGTGTATTTCTTCGACTT 59.350 38.462 0.00 0.00 0.00 3.01
6999 15423 3.601443 ACAACTCTAGCTGTCATGGTC 57.399 47.619 0.00 0.00 0.00 4.02
7060 15489 8.255206 ACATGTTGAATGTTGATATCTGCAATT 58.745 29.630 3.98 0.00 0.00 2.32
7082 15512 4.034858 CAGTTAGGCATAGAAGCACACATG 59.965 45.833 0.00 0.00 35.83 3.21
7111 15549 2.432444 GCCATATACCCGCTGCAAATA 58.568 47.619 0.00 0.00 0.00 1.40
7114 15552 1.596752 CGCCATATACCCGCTGCAA 60.597 57.895 0.00 0.00 0.00 4.08
7135 15583 3.000925 CGTTTCCGTGTATTGCATACTCC 59.999 47.826 0.00 0.00 36.70 3.85
7252 15704 0.738975 CGCTCAGGAGATTCACCGTA 59.261 55.000 0.00 0.00 0.00 4.02
7267 15719 3.444703 ACAGATCCACTTACATCGCTC 57.555 47.619 0.00 0.00 0.00 5.03
7270 15722 5.739630 GCGATATACAGATCCACTTACATCG 59.260 44.000 0.00 0.00 35.79 3.84
7464 16013 3.025978 CACAGCAACCCAATGTGGATAT 58.974 45.455 0.00 0.00 40.96 1.63
7495 16050 3.311110 GGCCTGTCGTCTGGGTCA 61.311 66.667 0.00 0.00 33.97 4.02
7501 16056 1.608717 GGATGTCAGGCCTGTCGTCT 61.609 60.000 35.52 20.41 35.80 4.18
7542 16097 1.919600 AAGCTCCATGTCCTCCCTGC 61.920 60.000 0.00 0.00 0.00 4.85
7594 16149 4.039852 GGAGAAGGTGAGTTTGAGTCTTCT 59.960 45.833 0.00 0.00 42.18 2.85
7686 16241 2.455674 TGCGTCAGTAATTGTGAGCT 57.544 45.000 0.00 0.00 0.00 4.09
7777 16332 1.000896 CCAAGAACCGGGCCTGATT 60.001 57.895 15.09 0.00 0.00 2.57
7785 16341 3.192422 TGCATTTTGTATCCAAGAACCGG 59.808 43.478 0.00 0.00 0.00 5.28
7799 16355 3.937706 TGGGTGTTTCAAAGTGCATTTTG 59.062 39.130 24.31 24.31 38.97 2.44
7861 16417 2.543653 GGCTTCATTTCTGTGCGTTTGT 60.544 45.455 0.00 0.00 0.00 2.83
7863 16419 1.680735 TGGCTTCATTTCTGTGCGTTT 59.319 42.857 0.00 0.00 0.00 3.60
7899 16455 7.004555 TGTAGTGAGACCTTTTGTATGTCAT 57.995 36.000 0.00 0.00 0.00 3.06
7902 16458 6.590292 CGAATGTAGTGAGACCTTTTGTATGT 59.410 38.462 0.00 0.00 0.00 2.29
7950 16506 5.562696 CGGCACATATCAATTTGATGTACCC 60.563 44.000 19.81 13.78 37.70 3.69
7963 16519 3.493129 GCTCGATTTAACGGCACATATCA 59.507 43.478 0.00 0.00 32.76 2.15
7964 16520 3.421826 CGCTCGATTTAACGGCACATATC 60.422 47.826 0.00 0.00 32.76 1.63
7970 16526 0.717224 GTTCGCTCGATTTAACGGCA 59.283 50.000 0.00 0.00 32.76 5.69
7985 16541 4.611310 TGAATCTGTACCGTCTAGTTCG 57.389 45.455 0.00 0.00 0.00 3.95
7991 16547 6.971184 CGTAGTAAAATGAATCTGTACCGTCT 59.029 38.462 0.00 0.00 0.00 4.18
7998 16554 9.982651 ATACTATGCGTAGTAAAATGAATCTGT 57.017 29.630 25.62 5.90 44.33 3.41
8006 16562 5.544948 TCCCCCATACTATGCGTAGTAAAAT 59.455 40.000 25.62 11.18 44.33 1.82
8016 16572 7.961326 AATGAAAATATCCCCCATACTATGC 57.039 36.000 0.00 0.00 0.00 3.14
8024 16590 6.273260 TGGTTTGAAAATGAAAATATCCCCCA 59.727 34.615 0.00 0.00 0.00 4.96
8025 16591 6.597672 GTGGTTTGAAAATGAAAATATCCCCC 59.402 38.462 0.00 0.00 0.00 5.40
8026 16592 6.312672 CGTGGTTTGAAAATGAAAATATCCCC 59.687 38.462 0.00 0.00 0.00 4.81
8030 16596 7.666623 AGGACGTGGTTTGAAAATGAAAATAT 58.333 30.769 0.00 0.00 0.00 1.28
8031 16597 7.045126 AGGACGTGGTTTGAAAATGAAAATA 57.955 32.000 0.00 0.00 0.00 1.40
8049 16625 1.420430 TGAGAGGGAACAAAGGACGT 58.580 50.000 0.00 0.00 0.00 4.34
8105 16682 5.588648 AGGAGAACGTTTTGACTCAAATGAA 59.411 36.000 14.47 0.00 33.19 2.57
8121 16698 1.825474 ACACATGGGTAGAGGAGAACG 59.175 52.381 0.00 0.00 0.00 3.95
8132 16709 3.060828 TGTAGGACGACACATGGGT 57.939 52.632 0.00 0.00 0.00 4.51
8156 16733 1.991230 GGCTCAAACCCTAGCTCCA 59.009 57.895 0.00 0.00 38.80 3.86
8184 16761 0.879400 CACATGCAGGGCTCGATCTC 60.879 60.000 2.31 0.00 0.00 2.75
8185 16762 1.145598 CACATGCAGGGCTCGATCT 59.854 57.895 2.31 0.00 0.00 2.75
8249 16826 2.206322 AGGGCCCACCATATACTTCA 57.794 50.000 27.56 0.00 43.89 3.02
8301 16880 2.034558 CAGTTCAATGTGCCTTTTCGGT 59.965 45.455 0.00 0.00 34.25 4.69
8318 16897 6.551601 TGGTGTTATTGGGTTCATTTACAGTT 59.448 34.615 0.00 0.00 0.00 3.16
8329 16908 1.627864 GCCAGTGGTGTTATTGGGTT 58.372 50.000 11.74 0.00 0.00 4.11
8391 16970 0.238289 GACGGTCCGTCGTGTCTTTA 59.762 55.000 27.59 0.00 46.56 1.85
8416 16995 1.112113 GGCCCGATGTGTCTCTTAGA 58.888 55.000 0.00 0.00 0.00 2.10
8421 17000 1.026718 CCTTTGGCCCGATGTGTCTC 61.027 60.000 0.00 0.00 0.00 3.36
8435 17014 1.674519 GCGGTTTTATTGGGCCCTTTG 60.675 52.381 25.70 3.48 0.00 2.77
8525 17111 2.936919 ACAGGCTGATGTGTCTTTCA 57.063 45.000 23.66 0.00 30.46 2.69
8592 17178 8.859090 GGACATTTTCATCATTATTATGGTCCA 58.141 33.333 0.00 0.00 32.40 4.02
8626 17212 2.606272 GTGTCGATTAATCCGGACAACC 59.394 50.000 20.83 10.87 0.00 3.77
8631 17217 3.429822 GGACTTGTGTCGATTAATCCGGA 60.430 47.826 6.61 6.61 43.79 5.14
8633 17219 3.782046 AGGACTTGTGTCGATTAATCCG 58.218 45.455 9.87 5.56 43.79 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.