Multiple sequence alignment - TraesCS2D01G221400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G221400 chr2D 100.000 5093 0 0 1 5093 188836538 188831446 0.000000e+00 9406.0
1 TraesCS2D01G221400 chr2D 75.000 656 131 23 1139 1779 189389542 189388905 6.500000e-69 272.0
2 TraesCS2D01G221400 chr2A 94.650 2486 91 17 2288 4753 202885813 202883350 0.000000e+00 3816.0
3 TraesCS2D01G221400 chr2A 92.080 1692 84 16 627 2290 202887577 202885908 0.000000e+00 2337.0
4 TraesCS2D01G221400 chr2A 91.143 621 29 5 1 618 202888148 202887551 0.000000e+00 819.0
5 TraesCS2D01G221400 chr2A 76.641 655 122 21 1139 1779 203321774 203321137 2.940000e-87 333.0
6 TraesCS2D01G221400 chr2A 88.112 143 7 7 4952 5093 202882716 202882583 1.470000e-35 161.0
7 TraesCS2D01G221400 chr2A 86.139 101 10 4 3521 3619 747381826 747381924 6.970000e-19 106.0
8 TraesCS2D01G221400 chr2A 90.909 77 4 2 4736 4809 202882815 202882739 3.240000e-17 100.0
9 TraesCS2D01G221400 chr2A 82.243 107 17 2 3521 3627 203315597 203315701 1.950000e-14 91.6
10 TraesCS2D01G221400 chr2B 93.670 2038 70 27 2632 4657 244918218 244916228 0.000000e+00 2994.0
11 TraesCS2D01G221400 chr2B 93.943 1684 63 16 627 2290 244920248 244918584 0.000000e+00 2508.0
12 TraesCS2D01G221400 chr2B 87.867 511 41 11 1 493 244934739 244934232 9.510000e-162 580.0
13 TraesCS2D01G221400 chr2B 93.116 276 9 3 2288 2556 244918487 244918215 3.700000e-106 396.0
14 TraesCS2D01G221400 chr2B 74.159 654 128 22 1139 1779 245794066 245793441 3.070000e-57 233.0
15 TraesCS2D01G221400 chr2B 94.253 87 4 1 4811 4897 791070042 791070127 1.150000e-26 132.0
16 TraesCS2D01G221400 chr2B 88.679 106 12 0 4385 4490 21856124 21856229 4.140000e-26 130.0
17 TraesCS2D01G221400 chr6D 85.667 1814 209 23 2291 4091 5479952 5478177 0.000000e+00 1862.0
18 TraesCS2D01G221400 chr6D 84.698 928 131 9 959 1877 5481629 5480704 0.000000e+00 917.0
19 TraesCS2D01G221400 chr6D 94.318 88 4 1 4811 4898 4643807 4643721 3.200000e-27 134.0
20 TraesCS2D01G221400 chr1A 75.708 1095 229 31 2874 3952 96464303 96465376 9.780000e-142 514.0
21 TraesCS2D01G221400 chr1A 76.221 778 160 24 3206 3972 96472442 96473205 6.180000e-104 388.0
22 TraesCS2D01G221400 chr1A 90.476 105 6 3 4796 4897 544732068 544732171 8.890000e-28 135.0
23 TraesCS2D01G221400 chr6A 75.420 1131 222 41 2876 3971 573000 571891 9.850000e-137 497.0
24 TraesCS2D01G221400 chr1B 76.282 780 158 25 3205 3971 123965980 123965215 1.720000e-104 390.0
25 TraesCS2D01G221400 chr1B 77.113 485 95 13 3192 3674 123973985 123973515 3.020000e-67 267.0
26 TraesCS2D01G221400 chr1B 95.349 86 3 1 4811 4896 670065059 670065143 8.890000e-28 135.0
27 TraesCS2D01G221400 chr6B 76.463 803 137 32 2676 3453 3824423 3823648 6.180000e-104 388.0
28 TraesCS2D01G221400 chr4D 94.845 97 4 1 4799 4895 546967 547062 3.180000e-32 150.0
29 TraesCS2D01G221400 chr3D 97.619 84 1 1 4811 4894 137021021 137020939 5.320000e-30 143.0
30 TraesCS2D01G221400 chr7B 95.349 86 3 1 4811 4896 18114594 18114678 8.890000e-28 135.0
31 TraesCS2D01G221400 chr7B 93.182 88 6 0 4811 4898 676406604 676406517 4.140000e-26 130.0
32 TraesCS2D01G221400 chr7B 91.667 48 4 0 4439 4486 144088044 144088091 3.290000e-07 67.6
33 TraesCS2D01G221400 chr3A 91.579 95 5 2 4804 4898 691350206 691350115 1.490000e-25 128.0
34 TraesCS2D01G221400 chr3A 85.849 106 15 0 4385 4490 736632918 736633023 4.170000e-21 113.0
35 TraesCS2D01G221400 chr3A 93.750 48 3 0 4430 4477 598894002 598893955 7.070000e-09 73.1
36 TraesCS2D01G221400 chrUn 84.000 100 15 1 4391 4490 86899592 86899690 1.510000e-15 95.3
37 TraesCS2D01G221400 chr4B 80.159 126 21 2 4354 4476 15201416 15201540 1.950000e-14 91.6
38 TraesCS2D01G221400 chr4B 81.481 108 16 2 4372 4476 14844309 14844415 9.090000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G221400 chr2D 188831446 188836538 5092 True 9406.0 9406 100.000000 1 5093 1 chr2D.!!$R1 5092
1 TraesCS2D01G221400 chr2D 189388905 189389542 637 True 272.0 272 75.000000 1139 1779 1 chr2D.!!$R2 640
2 TraesCS2D01G221400 chr2A 202882583 202888148 5565 True 1446.6 3816 91.378800 1 5093 5 chr2A.!!$R2 5092
3 TraesCS2D01G221400 chr2A 203321137 203321774 637 True 333.0 333 76.641000 1139 1779 1 chr2A.!!$R1 640
4 TraesCS2D01G221400 chr2B 244916228 244920248 4020 True 1966.0 2994 93.576333 627 4657 3 chr2B.!!$R3 4030
5 TraesCS2D01G221400 chr2B 244934232 244934739 507 True 580.0 580 87.867000 1 493 1 chr2B.!!$R1 492
6 TraesCS2D01G221400 chr2B 245793441 245794066 625 True 233.0 233 74.159000 1139 1779 1 chr2B.!!$R2 640
7 TraesCS2D01G221400 chr6D 5478177 5481629 3452 True 1389.5 1862 85.182500 959 4091 2 chr6D.!!$R2 3132
8 TraesCS2D01G221400 chr1A 96464303 96465376 1073 False 514.0 514 75.708000 2874 3952 1 chr1A.!!$F1 1078
9 TraesCS2D01G221400 chr1A 96472442 96473205 763 False 388.0 388 76.221000 3206 3972 1 chr1A.!!$F2 766
10 TraesCS2D01G221400 chr6A 571891 573000 1109 True 497.0 497 75.420000 2876 3971 1 chr6A.!!$R1 1095
11 TraesCS2D01G221400 chr1B 123965215 123965980 765 True 390.0 390 76.282000 3205 3971 1 chr1B.!!$R1 766
12 TraesCS2D01G221400 chr6B 3823648 3824423 775 True 388.0 388 76.463000 2676 3453 1 chr6B.!!$R1 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
625 659 0.179100 CTGGACTACTGGCGGTGATG 60.179 60.000 9.79 1.82 0.00 3.07 F
631 665 1.273606 CTACTGGCGGTGATGGATAGG 59.726 57.143 9.79 0.00 0.00 2.57 F
650 684 1.472728 GGTACGGCCTGATTACTGGTG 60.473 57.143 0.00 0.00 37.43 4.17 F
1429 1490 1.884235 CTTCTCCAACCGCAACTTCT 58.116 50.000 0.00 0.00 0.00 2.85 F
1902 1978 1.299541 ACTCGTGGTTTTGTCTGCTG 58.700 50.000 0.00 0.00 0.00 4.41 F
2600 3239 1.675714 CCGTACATTGGAGCAGAAGCA 60.676 52.381 0.00 0.00 45.49 3.91 F
3032 3673 1.748493 TGAGACTTGTTGGTGTTTGCC 59.252 47.619 0.00 0.00 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1429 1490 0.036952 AGGTAGTCGTCGTCGAGGAA 60.037 55.000 18.39 2.37 46.96 3.36 R
1802 1878 2.104530 GCGGCCTCTCTACGAACC 59.895 66.667 0.00 0.00 0.00 3.62 R
1887 1963 2.514205 ATTGCAGCAGACAAAACCAC 57.486 45.000 0.00 0.00 0.00 4.16 R
2248 2608 4.809958 CACACAAACCATTTGCAAGATTGA 59.190 37.500 12.21 0.00 44.39 2.57 R
3556 4263 1.009829 CCGACTTGCTGGAATACTGC 58.990 55.000 0.00 0.00 43.59 4.40 R
3995 4722 1.536284 CCGAATAGGCAGTCGAGGTTC 60.536 57.143 8.03 0.00 44.71 3.62 R
4925 6224 0.108615 CTGTCCAGTAGGAGCAACCG 60.109 60.000 0.00 0.00 46.92 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
316 326 1.673665 GAGTTGAGCTGCTGGGTGG 60.674 63.158 7.01 0.00 0.00 4.61
318 328 2.113774 TTGAGCTGCTGGGTGGTG 59.886 61.111 7.01 0.00 0.00 4.17
331 341 1.664321 GGTGGTGTCGCCGAGTAGAT 61.664 60.000 0.00 0.00 41.21 1.98
338 348 0.661552 TCGCCGAGTAGATGTACAGC 59.338 55.000 2.01 2.01 0.00 4.40
368 402 6.183360 GCGTACTGGTAGTTTCCAAGTAAATC 60.183 42.308 0.00 0.00 37.01 2.17
406 440 2.427905 CCGACGCTGACGAACGAA 60.428 61.111 0.14 0.00 43.93 3.85
407 441 2.704193 CCGACGCTGACGAACGAAC 61.704 63.158 0.14 0.00 43.93 3.95
408 442 2.007114 CGACGCTGACGAACGAACA 61.007 57.895 0.14 0.62 43.93 3.18
409 443 1.767388 GACGCTGACGAACGAACAG 59.233 57.895 15.88 15.88 43.93 3.16
410 444 0.659417 GACGCTGACGAACGAACAGA 60.659 55.000 20.81 0.00 43.93 3.41
411 445 0.933509 ACGCTGACGAACGAACAGAC 60.934 55.000 20.81 14.26 43.93 3.51
461 495 3.182967 CAGCTGATGTCGAAAGGAGTAC 58.817 50.000 8.42 0.00 0.00 2.73
468 502 2.159421 TGTCGAAAGGAGTACGATGAGC 60.159 50.000 0.00 0.00 38.27 4.26
486 520 1.210413 CAGAGTGAGGTCGTGGTCG 59.790 63.158 0.00 0.00 38.55 4.79
487 521 1.228184 AGAGTGAGGTCGTGGTCGT 60.228 57.895 0.00 0.00 38.33 4.34
488 522 1.081376 GAGTGAGGTCGTGGTCGTG 60.081 63.158 0.00 0.00 38.33 4.35
489 523 1.512996 GAGTGAGGTCGTGGTCGTGA 61.513 60.000 0.00 0.00 38.33 4.35
493 527 4.034258 GGTCGTGGTCGTGAGCGA 62.034 66.667 0.00 0.00 45.79 4.93
518 552 4.728102 CGGTTAGGTGGCGTCGCA 62.728 66.667 20.50 2.14 0.00 5.10
537 571 1.820519 CACATGGTGGGATTGGTCAAG 59.179 52.381 0.00 0.00 0.00 3.02
569 603 2.768527 TGACCATTTGTTTCTTTGGCCA 59.231 40.909 0.00 0.00 32.26 5.36
585 619 1.448985 GCCATTTTCTGCGTCAGGTA 58.551 50.000 6.95 0.00 31.51 3.08
604 638 3.688673 GGTATTCTAGATAGCTACGGCGT 59.311 47.826 19.64 19.64 44.37 5.68
605 639 3.833545 ATTCTAGATAGCTACGGCGTG 57.166 47.619 24.86 13.74 44.37 5.34
618 652 2.815647 GCGTGCTGGACTACTGGC 60.816 66.667 0.00 0.00 0.00 4.85
619 653 2.507102 CGTGCTGGACTACTGGCG 60.507 66.667 0.00 0.00 0.00 5.69
620 654 2.125512 GTGCTGGACTACTGGCGG 60.126 66.667 0.00 0.00 0.00 6.13
621 655 2.603473 TGCTGGACTACTGGCGGT 60.603 61.111 3.57 3.57 0.00 5.68
622 656 2.125512 GCTGGACTACTGGCGGTG 60.126 66.667 9.79 1.69 0.00 4.94
623 657 2.646175 GCTGGACTACTGGCGGTGA 61.646 63.158 9.79 0.00 0.00 4.02
624 658 1.961180 GCTGGACTACTGGCGGTGAT 61.961 60.000 9.79 0.00 0.00 3.06
625 659 0.179100 CTGGACTACTGGCGGTGATG 60.179 60.000 9.79 1.82 0.00 3.07
631 665 1.273606 CTACTGGCGGTGATGGATAGG 59.726 57.143 9.79 0.00 0.00 2.57
650 684 1.472728 GGTACGGCCTGATTACTGGTG 60.473 57.143 0.00 0.00 37.43 4.17
662 696 5.482006 TGATTACTGGTGAGTGTCAAGATG 58.518 41.667 0.00 0.00 33.21 2.90
667 701 3.732212 TGGTGAGTGTCAAGATGAACAG 58.268 45.455 0.00 0.00 0.00 3.16
700 739 7.181143 TGGAGAAACGTCAAATAAACTGTAC 57.819 36.000 0.00 0.00 0.00 2.90
707 751 9.748708 AAACGTCAAATAAACTGTACAGTAGTA 57.251 29.630 28.13 21.84 41.58 1.82
708 752 8.961294 ACGTCAAATAAACTGTACAGTAGTAG 57.039 34.615 28.13 15.70 41.58 2.57
709 753 8.571336 ACGTCAAATAAACTGTACAGTAGTAGT 58.429 33.333 28.13 18.68 41.58 2.73
935 989 4.464244 CCCCTTCTCCTTTTGATTTCCTTC 59.536 45.833 0.00 0.00 0.00 3.46
936 990 5.328565 CCCTTCTCCTTTTGATTTCCTTCT 58.671 41.667 0.00 0.00 0.00 2.85
937 991 5.777223 CCCTTCTCCTTTTGATTTCCTTCTT 59.223 40.000 0.00 0.00 0.00 2.52
938 992 6.294955 CCCTTCTCCTTTTGATTTCCTTCTTG 60.295 42.308 0.00 0.00 0.00 3.02
939 993 6.266330 CCTTCTCCTTTTGATTTCCTTCTTGT 59.734 38.462 0.00 0.00 0.00 3.16
940 994 7.201947 CCTTCTCCTTTTGATTTCCTTCTTGTT 60.202 37.037 0.00 0.00 0.00 2.83
941 995 7.660030 TCTCCTTTTGATTTCCTTCTTGTTT 57.340 32.000 0.00 0.00 0.00 2.83
1060 1115 2.922503 TCGCTGCCACCTTCCTCA 60.923 61.111 0.00 0.00 0.00 3.86
1429 1490 1.884235 CTTCTCCAACCGCAACTTCT 58.116 50.000 0.00 0.00 0.00 2.85
1887 1963 5.808540 TGTACGAAGGGAAATCATTTACTCG 59.191 40.000 3.09 3.09 0.00 4.18
1895 1971 5.861787 GGGAAATCATTTACTCGTGGTTTTG 59.138 40.000 0.00 0.00 29.34 2.44
1901 1977 2.902705 TACTCGTGGTTTTGTCTGCT 57.097 45.000 0.00 0.00 0.00 4.24
1902 1978 1.299541 ACTCGTGGTTTTGTCTGCTG 58.700 50.000 0.00 0.00 0.00 4.41
2157 2317 4.158579 TGTCAGTCATAGAATTGCTCGACT 59.841 41.667 0.00 0.00 39.05 4.18
2248 2608 8.105829 AGAAAGAACATGATCCTTGAATACAGT 58.894 33.333 0.00 0.00 0.00 3.55
2415 2971 2.903135 CTGTTGGAGGAAGAGAAGACCT 59.097 50.000 0.00 0.00 36.68 3.85
2598 3237 2.672961 TCCGTACATTGGAGCAGAAG 57.327 50.000 0.00 0.00 0.00 2.85
2600 3239 1.675714 CCGTACATTGGAGCAGAAGCA 60.676 52.381 0.00 0.00 45.49 3.91
2852 3493 3.555586 GGGGACGTAGCTTTGTCAGTTAA 60.556 47.826 16.84 0.00 36.83 2.01
3032 3673 1.748493 TGAGACTTGTTGGTGTTTGCC 59.252 47.619 0.00 0.00 0.00 4.52
3326 4029 3.576982 TGAAGATAGTTCACCGTGACCTT 59.423 43.478 3.68 2.27 0.00 3.50
3356 4059 7.174746 CGAGCAATATACTACTAGATGTCGAC 58.825 42.308 9.11 9.11 0.00 4.20
3567 4274 3.272334 GCGCGGGCAGTATTCCAG 61.272 66.667 20.76 0.00 39.62 3.86
3995 4722 0.319728 CAGGAGGTCAGTGTCAGTGG 59.680 60.000 7.82 0.00 0.00 4.00
4099 4831 2.586258 TTCGCCAAGATGAGTCTAGC 57.414 50.000 0.00 0.00 33.30 3.42
4134 4866 2.932614 CTGAACCAGCTGTGTATAGTGC 59.067 50.000 13.81 1.03 0.00 4.40
4142 4874 4.806247 CAGCTGTGTATAGTGCTTCTTACC 59.194 45.833 5.25 0.00 33.03 2.85
4153 4885 3.550678 GTGCTTCTTACCGTACAGTATGC 59.449 47.826 0.00 0.00 42.53 3.14
4165 4897 6.150318 CCGTACAGTATGCCAGTATCTTAAG 58.850 44.000 0.00 0.00 42.53 1.85
4169 4901 5.817816 ACAGTATGCCAGTATCTTAAGTTGC 59.182 40.000 1.63 0.00 42.53 4.17
4371 5111 8.364129 TGCCAATTTTTCTGTTCAACTAAATC 57.636 30.769 0.00 0.00 0.00 2.17
4380 5120 3.192422 TGTTCAACTAAATCATTGCCCGG 59.808 43.478 0.00 0.00 0.00 5.73
4433 5173 7.982354 AGTACTTTAGTCTGTGATTTATCTGCC 59.018 37.037 0.00 0.00 0.00 4.85
4447 5187 9.013229 TGATTTATCTGCCCATATTAATGTGAC 57.987 33.333 13.30 6.10 0.00 3.67
4599 5341 8.381786 TTTTCAAGAAAAACCGGTGAAAAACCA 61.382 33.333 18.96 3.09 42.27 3.67
4611 5353 4.000988 GTGAAAAACCAGCGATAGGAAGA 58.999 43.478 0.00 0.00 0.00 2.87
4648 5391 0.396139 AGAAGGCGGGGACATACGTA 60.396 55.000 0.00 0.00 0.00 3.57
4692 5436 3.181461 CGAAGAGAAGGCAGGGAACATAT 60.181 47.826 0.00 0.00 0.00 1.78
4696 5440 4.346418 AGAGAAGGCAGGGAACATATGTAG 59.654 45.833 9.21 0.00 0.00 2.74
4711 5455 0.587768 TGTAGAGTTGAACGACGCGA 59.412 50.000 15.93 0.00 0.00 5.87
4728 5472 2.165030 CGCGAGTTCTACCTAAAAGGGA 59.835 50.000 0.00 0.00 40.58 4.20
4780 6079 9.791801 GTAGAGATAGAGATATATGAGGATGCA 57.208 37.037 0.00 0.00 0.00 3.96
4798 6097 3.820557 TGCAAGCCTTTTCAAGTCTAGT 58.179 40.909 0.00 0.00 0.00 2.57
4799 6098 4.968259 TGCAAGCCTTTTCAAGTCTAGTA 58.032 39.130 0.00 0.00 0.00 1.82
4800 6099 5.373222 TGCAAGCCTTTTCAAGTCTAGTAA 58.627 37.500 0.00 0.00 0.00 2.24
4801 6100 5.825679 TGCAAGCCTTTTCAAGTCTAGTAAA 59.174 36.000 0.00 0.00 0.00 2.01
4802 6101 6.320164 TGCAAGCCTTTTCAAGTCTAGTAAAA 59.680 34.615 0.00 0.00 0.00 1.52
4803 6102 6.637254 GCAAGCCTTTTCAAGTCTAGTAAAAC 59.363 38.462 0.00 0.00 0.00 2.43
4804 6103 7.468768 GCAAGCCTTTTCAAGTCTAGTAAAACT 60.469 37.037 0.00 0.00 0.00 2.66
4805 6104 9.052759 CAAGCCTTTTCAAGTCTAGTAAAACTA 57.947 33.333 0.00 0.00 0.00 2.24
4806 6105 9.623000 AAGCCTTTTCAAGTCTAGTAAAACTAA 57.377 29.630 0.00 0.00 29.00 2.24
4807 6106 9.794719 AGCCTTTTCAAGTCTAGTAAAACTAAT 57.205 29.630 0.00 0.00 29.00 1.73
4849 6148 9.039870 CATCTAGATGTTTTCTAAGGATGTCAC 57.960 37.037 22.42 0.00 36.15 3.67
4850 6149 8.134202 TCTAGATGTTTTCTAAGGATGTCACA 57.866 34.615 0.00 0.00 36.50 3.58
4851 6150 8.762645 TCTAGATGTTTTCTAAGGATGTCACAT 58.237 33.333 0.00 0.00 36.50 3.21
4852 6151 7.856145 AGATGTTTTCTAAGGATGTCACATC 57.144 36.000 9.53 9.53 39.62 3.06
4853 6152 7.628234 AGATGTTTTCTAAGGATGTCACATCT 58.372 34.615 17.46 1.18 42.98 2.90
4854 6153 8.762645 AGATGTTTTCTAAGGATGTCACATCTA 58.237 33.333 17.46 2.37 44.89 1.98
4855 6154 9.383519 GATGTTTTCTAAGGATGTCACATCTAA 57.616 33.333 17.46 2.83 37.41 2.10
4856 6155 8.777865 TGTTTTCTAAGGATGTCACATCTAAG 57.222 34.615 17.46 11.83 0.00 2.18
4857 6156 7.334421 TGTTTTCTAAGGATGTCACATCTAAGC 59.666 37.037 17.46 0.73 0.00 3.09
4858 6157 6.798427 TTCTAAGGATGTCACATCTAAGCT 57.202 37.500 17.46 3.19 0.00 3.74
4859 6158 6.798427 TCTAAGGATGTCACATCTAAGCTT 57.202 37.500 17.46 13.56 0.00 3.74
4860 6159 6.810911 TCTAAGGATGTCACATCTAAGCTTC 58.189 40.000 17.46 0.00 0.00 3.86
4861 6160 4.414337 AGGATGTCACATCTAAGCTTCC 57.586 45.455 17.46 0.00 0.00 3.46
4862 6161 3.776969 AGGATGTCACATCTAAGCTTCCA 59.223 43.478 17.46 0.00 0.00 3.53
4863 6162 4.411540 AGGATGTCACATCTAAGCTTCCAT 59.588 41.667 17.46 0.00 0.00 3.41
4864 6163 5.604231 AGGATGTCACATCTAAGCTTCCATA 59.396 40.000 17.46 0.00 0.00 2.74
4865 6164 6.100279 AGGATGTCACATCTAAGCTTCCATAA 59.900 38.462 17.46 0.00 0.00 1.90
4866 6165 6.767902 GGATGTCACATCTAAGCTTCCATAAA 59.232 38.462 17.46 0.00 0.00 1.40
4867 6166 7.446625 GGATGTCACATCTAAGCTTCCATAAAT 59.553 37.037 17.46 0.00 0.00 1.40
4868 6167 9.494271 GATGTCACATCTAAGCTTCCATAAATA 57.506 33.333 10.81 0.00 0.00 1.40
4869 6168 9.851686 ATGTCACATCTAAGCTTCCATAAATAA 57.148 29.630 0.00 0.00 0.00 1.40
4870 6169 9.109393 TGTCACATCTAAGCTTCCATAAATAAC 57.891 33.333 0.00 0.00 0.00 1.89
4871 6170 9.109393 GTCACATCTAAGCTTCCATAAATAACA 57.891 33.333 0.00 0.00 0.00 2.41
4872 6171 9.109393 TCACATCTAAGCTTCCATAAATAACAC 57.891 33.333 0.00 0.00 0.00 3.32
4873 6172 8.892723 CACATCTAAGCTTCCATAAATAACACA 58.107 33.333 0.00 0.00 0.00 3.72
4874 6173 9.113838 ACATCTAAGCTTCCATAAATAACACAG 57.886 33.333 0.00 0.00 0.00 3.66
4875 6174 7.553881 TCTAAGCTTCCATAAATAACACAGC 57.446 36.000 0.00 0.00 0.00 4.40
4876 6175 7.109501 TCTAAGCTTCCATAAATAACACAGCA 58.890 34.615 0.00 0.00 0.00 4.41
4877 6176 6.588719 AAGCTTCCATAAATAACACAGCAA 57.411 33.333 0.00 0.00 0.00 3.91
4878 6177 5.954335 AGCTTCCATAAATAACACAGCAAC 58.046 37.500 0.00 0.00 0.00 4.17
4879 6178 5.476599 AGCTTCCATAAATAACACAGCAACA 59.523 36.000 0.00 0.00 0.00 3.33
4880 6179 6.015519 AGCTTCCATAAATAACACAGCAACAA 60.016 34.615 0.00 0.00 0.00 2.83
4881 6180 6.308766 GCTTCCATAAATAACACAGCAACAAG 59.691 38.462 0.00 0.00 0.00 3.16
4882 6181 6.266168 TCCATAAATAACACAGCAACAAGG 57.734 37.500 0.00 0.00 0.00 3.61
4883 6182 6.007076 TCCATAAATAACACAGCAACAAGGA 58.993 36.000 0.00 0.00 0.00 3.36
4884 6183 6.491745 TCCATAAATAACACAGCAACAAGGAA 59.508 34.615 0.00 0.00 0.00 3.36
4885 6184 6.586082 CCATAAATAACACAGCAACAAGGAAC 59.414 38.462 0.00 0.00 0.00 3.62
4886 6185 5.590530 AAATAACACAGCAACAAGGAACA 57.409 34.783 0.00 0.00 0.00 3.18
4887 6186 5.590530 AATAACACAGCAACAAGGAACAA 57.409 34.783 0.00 0.00 0.00 2.83
4888 6187 2.939460 ACACAGCAACAAGGAACAAC 57.061 45.000 0.00 0.00 0.00 3.32
4889 6188 2.166829 ACACAGCAACAAGGAACAACA 58.833 42.857 0.00 0.00 0.00 3.33
4890 6189 2.560542 ACACAGCAACAAGGAACAACAA 59.439 40.909 0.00 0.00 0.00 2.83
4891 6190 3.006323 ACACAGCAACAAGGAACAACAAA 59.994 39.130 0.00 0.00 0.00 2.83
4892 6191 3.993081 CACAGCAACAAGGAACAACAAAA 59.007 39.130 0.00 0.00 0.00 2.44
4893 6192 4.450419 CACAGCAACAAGGAACAACAAAAA 59.550 37.500 0.00 0.00 0.00 1.94
4935 6234 2.303022 TCTGATTTTCTCGGTTGCTCCT 59.697 45.455 0.00 0.00 0.00 3.69
4936 6235 3.513912 TCTGATTTTCTCGGTTGCTCCTA 59.486 43.478 0.00 0.00 0.00 2.94
4937 6236 3.596214 TGATTTTCTCGGTTGCTCCTAC 58.404 45.455 0.00 0.00 0.00 3.18
4939 6238 2.743636 TTTCTCGGTTGCTCCTACTG 57.256 50.000 0.00 0.00 0.00 2.74
4940 6239 0.895530 TTCTCGGTTGCTCCTACTGG 59.104 55.000 0.00 0.00 0.00 4.00
4941 6240 0.039180 TCTCGGTTGCTCCTACTGGA 59.961 55.000 0.00 0.00 40.69 3.86
4942 6241 0.173708 CTCGGTTGCTCCTACTGGAC 59.826 60.000 0.00 0.00 37.46 4.02
4943 6242 0.541063 TCGGTTGCTCCTACTGGACA 60.541 55.000 0.00 0.00 37.46 4.02
4944 6243 0.108615 CGGTTGCTCCTACTGGACAG 60.109 60.000 0.00 0.00 37.46 3.51
4945 6244 0.391793 GGTTGCTCCTACTGGACAGC 60.392 60.000 0.00 0.00 37.46 4.40
4946 6245 0.321671 GTTGCTCCTACTGGACAGCA 59.678 55.000 0.00 0.00 40.39 4.41
4947 6246 0.610174 TTGCTCCTACTGGACAGCAG 59.390 55.000 0.00 0.00 42.16 4.24
4948 6247 0.542938 TGCTCCTACTGGACAGCAGT 60.543 55.000 0.00 0.00 38.23 4.40
4949 6248 0.174617 GCTCCTACTGGACAGCAGTC 59.825 60.000 0.00 0.00 44.21 3.51
4950 6249 1.846007 CTCCTACTGGACAGCAGTCT 58.154 55.000 9.29 0.00 44.36 3.24
4951 6250 1.748493 CTCCTACTGGACAGCAGTCTC 59.252 57.143 9.29 0.37 44.36 3.36
4952 6251 1.075536 TCCTACTGGACAGCAGTCTCA 59.924 52.381 9.29 4.94 44.36 3.27
4953 6252 1.476085 CCTACTGGACAGCAGTCTCAG 59.524 57.143 19.17 19.17 44.36 3.35
4954 6253 1.476085 CTACTGGACAGCAGTCTCAGG 59.524 57.143 22.37 9.49 44.36 3.86
4955 6254 0.470833 ACTGGACAGCAGTCTCAGGT 60.471 55.000 22.37 10.14 44.36 4.00
4956 6255 1.203063 ACTGGACAGCAGTCTCAGGTA 60.203 52.381 22.37 1.79 44.36 3.08
4988 6287 6.346838 CCATTTCATTTGTTTCCTTCGCTTTC 60.347 38.462 0.00 0.00 0.00 2.62
4993 6292 3.963383 TGTTTCCTTCGCTTTCTGTTC 57.037 42.857 0.00 0.00 0.00 3.18
4994 6293 3.541632 TGTTTCCTTCGCTTTCTGTTCT 58.458 40.909 0.00 0.00 0.00 3.01
4995 6294 3.312421 TGTTTCCTTCGCTTTCTGTTCTG 59.688 43.478 0.00 0.00 0.00 3.02
4998 6297 3.131396 TCCTTCGCTTTCTGTTCTGTTC 58.869 45.455 0.00 0.00 0.00 3.18
5001 6300 4.035675 CCTTCGCTTTCTGTTCTGTTCTTT 59.964 41.667 0.00 0.00 0.00 2.52
5002 6301 5.236478 CCTTCGCTTTCTGTTCTGTTCTTTA 59.764 40.000 0.00 0.00 0.00 1.85
5003 6302 6.073003 CCTTCGCTTTCTGTTCTGTTCTTTAT 60.073 38.462 0.00 0.00 0.00 1.40
5004 6303 6.861065 TCGCTTTCTGTTCTGTTCTTTATT 57.139 33.333 0.00 0.00 0.00 1.40
5005 6304 7.956420 TCGCTTTCTGTTCTGTTCTTTATTA 57.044 32.000 0.00 0.00 0.00 0.98
5006 6305 8.547967 TCGCTTTCTGTTCTGTTCTTTATTAT 57.452 30.769 0.00 0.00 0.00 1.28
5007 6306 8.999431 TCGCTTTCTGTTCTGTTCTTTATTATT 58.001 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 213 2.754658 TCCTCCTCGCGTTCCTCC 60.755 66.667 5.77 0.00 0.00 4.30
242 252 2.009681 TGCTCTCTGTTACCACCTCA 57.990 50.000 0.00 0.00 0.00 3.86
289 299 1.078848 AGCTCAACTCCATGGCGAC 60.079 57.895 9.17 0.00 0.00 5.19
316 326 1.399440 TGTACATCTACTCGGCGACAC 59.601 52.381 4.99 0.00 0.00 3.67
318 328 1.597445 GCTGTACATCTACTCGGCGAC 60.597 57.143 4.99 0.00 0.00 5.19
323 333 1.268589 CCCGTGCTGTACATCTACTCG 60.269 57.143 0.00 0.00 0.00 4.18
331 341 2.259204 GTACGCCCGTGCTGTACA 59.741 61.111 15.64 0.00 42.12 2.90
338 348 0.037975 AAACTACCAGTACGCCCGTG 60.038 55.000 3.22 0.00 0.00 4.94
399 433 0.179207 TCGATCGGTCTGTTCGTTCG 60.179 55.000 16.41 14.40 45.37 3.95
400 434 1.647702 GTTCGATCGGTCTGTTCGTTC 59.352 52.381 16.41 3.80 40.03 3.95
401 435 1.268899 AGTTCGATCGGTCTGTTCGTT 59.731 47.619 16.41 0.00 40.03 3.85
402 436 0.879765 AGTTCGATCGGTCTGTTCGT 59.120 50.000 16.41 0.00 40.03 3.85
403 437 1.260206 CAGTTCGATCGGTCTGTTCG 58.740 55.000 22.59 5.88 40.37 3.95
404 438 2.349297 ACAGTTCGATCGGTCTGTTC 57.651 50.000 27.23 9.36 37.81 3.18
405 439 2.814280 AACAGTTCGATCGGTCTGTT 57.186 45.000 32.01 32.01 43.36 3.16
406 440 1.935300 GCAACAGTTCGATCGGTCTGT 60.935 52.381 27.23 27.23 41.93 3.41
407 441 0.716108 GCAACAGTTCGATCGGTCTG 59.284 55.000 26.29 26.29 0.00 3.51
408 442 0.603569 AGCAACAGTTCGATCGGTCT 59.396 50.000 16.41 10.94 0.00 3.85
409 443 0.716108 CAGCAACAGTTCGATCGGTC 59.284 55.000 16.41 8.72 0.00 4.79
410 444 1.291877 GCAGCAACAGTTCGATCGGT 61.292 55.000 16.41 1.62 0.00 4.69
411 445 1.421485 GCAGCAACAGTTCGATCGG 59.579 57.895 16.41 0.89 0.00 4.18
461 495 0.248417 CGACCTCACTCTGCTCATCG 60.248 60.000 0.00 0.00 0.00 3.84
468 502 1.210413 CGACCACGACCTCACTCTG 59.790 63.158 0.00 0.00 42.66 3.35
493 527 4.430765 CACCTAACCGCGTCCGCT 62.431 66.667 4.92 0.00 39.32 5.52
515 549 1.656818 GACCAATCCCACCATGTGCG 61.657 60.000 0.00 0.00 31.34 5.34
518 552 1.428912 ACTTGACCAATCCCACCATGT 59.571 47.619 0.00 0.00 0.00 3.21
527 561 1.168714 GCCACCTCACTTGACCAATC 58.831 55.000 0.00 0.00 0.00 2.67
569 603 6.222038 TCTAGAATACCTGACGCAGAAAAT 57.778 37.500 8.20 0.00 32.44 1.82
585 619 2.095161 GCACGCCGTAGCTATCTAGAAT 60.095 50.000 0.00 0.00 36.60 2.40
604 638 2.603473 ACCGCCAGTAGTCCAGCA 60.603 61.111 0.00 0.00 0.00 4.41
605 639 1.961180 ATCACCGCCAGTAGTCCAGC 61.961 60.000 0.00 0.00 0.00 4.85
618 652 0.038526 GCCGTACCTATCCATCACCG 60.039 60.000 0.00 0.00 0.00 4.94
619 653 0.320697 GGCCGTACCTATCCATCACC 59.679 60.000 0.00 0.00 34.51 4.02
620 654 3.908737 GGCCGTACCTATCCATCAC 57.091 57.895 0.00 0.00 34.51 3.06
631 665 1.479323 TCACCAGTAATCAGGCCGTAC 59.521 52.381 0.00 0.00 0.00 3.67
642 676 5.163353 TGTTCATCTTGACACTCACCAGTAA 60.163 40.000 0.00 0.00 0.00 2.24
650 684 6.481644 AGTTTTCTCTGTTCATCTTGACACTC 59.518 38.462 0.00 0.00 0.00 3.51
662 696 5.064834 ACGTTTCTCCAAGTTTTCTCTGTTC 59.935 40.000 0.00 0.00 0.00 3.18
667 701 5.479716 TTGACGTTTCTCCAAGTTTTCTC 57.520 39.130 0.00 0.00 0.00 2.87
700 739 5.049543 GCGAACCATCCTAGTACTACTACTG 60.050 48.000 0.00 0.00 34.79 2.74
707 751 4.755266 AATTGCGAACCATCCTAGTACT 57.245 40.909 0.00 0.00 0.00 2.73
708 752 4.443394 CGTAATTGCGAACCATCCTAGTAC 59.557 45.833 10.69 0.00 0.00 2.73
709 753 4.098349 ACGTAATTGCGAACCATCCTAGTA 59.902 41.667 22.96 0.00 35.59 1.82
710 754 3.118884 ACGTAATTGCGAACCATCCTAGT 60.119 43.478 22.96 0.00 35.59 2.57
767 816 4.144731 CGTTGATTTGACGTTTCTTCAAGC 59.855 41.667 0.00 0.00 34.50 4.01
797 846 4.225497 GGCTAATGGCGAGCAACT 57.775 55.556 7.95 0.00 41.98 3.16
883 937 2.099592 GGTGTCGGTCGGTGTATCATTA 59.900 50.000 0.00 0.00 0.00 1.90
1429 1490 0.036952 AGGTAGTCGTCGTCGAGGAA 60.037 55.000 18.39 2.37 46.96 3.36
1800 1876 2.806237 GGCCTCTCTACGAACCGG 59.194 66.667 0.00 0.00 0.00 5.28
1802 1878 2.104530 GCGGCCTCTCTACGAACC 59.895 66.667 0.00 0.00 0.00 3.62
1887 1963 2.514205 ATTGCAGCAGACAAAACCAC 57.486 45.000 0.00 0.00 0.00 4.16
2248 2608 4.809958 CACACAAACCATTTGCAAGATTGA 59.190 37.500 12.21 0.00 44.39 2.57
2415 2971 5.127194 ACAAGGTAGATACGCATCTTCTTCA 59.873 40.000 2.88 0.00 41.84 3.02
2566 3205 5.295045 CCAATGTACGGATAACCTTTGGTAC 59.705 44.000 0.00 0.00 33.12 3.34
2598 3237 9.159470 GTTTTGAGCTCTTTACGAAATATATGC 57.841 33.333 16.19 0.00 0.00 3.14
2600 3239 9.614792 AGGTTTTGAGCTCTTTACGAAATATAT 57.385 29.630 16.19 0.00 0.00 0.86
3326 4029 9.011095 ACATCTAGTAGTATATTGCTCGCTTTA 57.989 33.333 0.00 0.00 0.00 1.85
3356 4059 7.399523 CGAAGTCGGAAATTTTAGGATTGTAG 58.600 38.462 0.00 0.00 35.37 2.74
3556 4263 1.009829 CCGACTTGCTGGAATACTGC 58.990 55.000 0.00 0.00 43.59 4.40
3567 4274 1.853319 CTGAACACGTCCGACTTGC 59.147 57.895 4.98 0.00 0.00 4.01
3995 4722 1.536284 CCGAATAGGCAGTCGAGGTTC 60.536 57.143 8.03 0.00 44.71 3.62
4099 4831 4.555511 GCTGGTTCAGTTAACTGCTTCAAG 60.556 45.833 27.49 21.22 43.46 3.02
4134 4866 4.142227 ACTGGCATACTGTACGGTAAGAAG 60.142 45.833 18.23 15.69 0.00 2.85
4142 4874 6.736123 ACTTAAGATACTGGCATACTGTACG 58.264 40.000 10.09 0.00 36.50 3.67
4153 4885 6.599244 TCATTTCCAGCAACTTAAGATACTGG 59.401 38.462 20.83 20.83 44.87 4.00
4165 4897 3.091545 TCCCAAGATCATTTCCAGCAAC 58.908 45.455 0.00 0.00 0.00 4.17
4169 4901 3.434739 CCTCCTCCCAAGATCATTTCCAG 60.435 52.174 0.00 0.00 0.00 3.86
4371 5111 1.680651 TTGTAAGGCCCGGGCAATG 60.681 57.895 44.46 9.36 44.11 2.82
4380 5120 3.756933 TGTATATCCCGTTGTAAGGCC 57.243 47.619 0.00 0.00 0.00 5.19
4558 5299 5.667466 TCTTGAAAACGTCTTAACTGTCCT 58.333 37.500 0.00 0.00 0.00 3.85
4616 5358 2.484264 CCGCCTTCTCTTCGTTTTGAAT 59.516 45.455 0.00 0.00 35.63 2.57
4671 5415 2.797177 ATGTTCCCTGCCTTCTCTTC 57.203 50.000 0.00 0.00 0.00 2.87
4678 5422 3.658725 ACTCTACATATGTTCCCTGCCT 58.341 45.455 14.77 0.00 0.00 4.75
4692 5436 0.587768 TCGCGTCGTTCAACTCTACA 59.412 50.000 5.77 0.00 0.00 2.74
4696 5440 0.430110 GAACTCGCGTCGTTCAACTC 59.570 55.000 26.79 10.14 40.27 3.01
4711 5455 5.073280 AGCAAGTTCCCTTTTAGGTAGAACT 59.927 40.000 9.98 9.98 43.85 3.01
4716 5460 8.715190 AAAAATAGCAAGTTCCCTTTTAGGTA 57.285 30.769 0.00 0.00 31.93 3.08
4717 5461 7.612065 AAAAATAGCAAGTTCCCTTTTAGGT 57.388 32.000 0.00 0.00 31.93 3.08
4823 6122 9.039870 GTGACATCCTTAGAAAACATCTAGATG 57.960 37.037 27.63 27.63 42.94 2.90
4824 6123 8.762645 TGTGACATCCTTAGAAAACATCTAGAT 58.237 33.333 0.00 0.00 41.59 1.98
4825 6124 8.134202 TGTGACATCCTTAGAAAACATCTAGA 57.866 34.615 0.00 0.00 41.59 2.43
4826 6125 8.954950 ATGTGACATCCTTAGAAAACATCTAG 57.045 34.615 0.00 0.00 41.59 2.43
4827 6126 8.762645 AGATGTGACATCCTTAGAAAACATCTA 58.237 33.333 21.05 0.00 46.74 1.98
4828 6127 7.628234 AGATGTGACATCCTTAGAAAACATCT 58.372 34.615 21.05 8.71 44.92 2.90
4829 6128 7.856145 AGATGTGACATCCTTAGAAAACATC 57.144 36.000 21.05 0.00 41.77 3.06
4830 6129 9.388506 CTTAGATGTGACATCCTTAGAAAACAT 57.611 33.333 21.05 1.75 0.00 2.71
4831 6130 7.334421 GCTTAGATGTGACATCCTTAGAAAACA 59.666 37.037 21.05 0.00 0.00 2.83
4832 6131 7.550906 AGCTTAGATGTGACATCCTTAGAAAAC 59.449 37.037 21.05 4.74 0.00 2.43
4833 6132 7.624549 AGCTTAGATGTGACATCCTTAGAAAA 58.375 34.615 21.05 4.95 0.00 2.29
4834 6133 7.187824 AGCTTAGATGTGACATCCTTAGAAA 57.812 36.000 21.05 6.46 0.00 2.52
4835 6134 6.798427 AGCTTAGATGTGACATCCTTAGAA 57.202 37.500 21.05 7.83 0.00 2.10
4836 6135 6.183360 GGAAGCTTAGATGTGACATCCTTAGA 60.183 42.308 21.05 3.38 0.00 2.10
4837 6136 5.988561 GGAAGCTTAGATGTGACATCCTTAG 59.011 44.000 21.05 15.92 0.00 2.18
4838 6137 5.425217 TGGAAGCTTAGATGTGACATCCTTA 59.575 40.000 21.05 6.22 0.00 2.69
4839 6138 4.225942 TGGAAGCTTAGATGTGACATCCTT 59.774 41.667 21.05 16.28 0.00 3.36
4840 6139 3.776969 TGGAAGCTTAGATGTGACATCCT 59.223 43.478 21.05 8.88 0.00 3.24
4841 6140 4.142609 TGGAAGCTTAGATGTGACATCC 57.857 45.455 21.05 6.31 0.00 3.51
4842 6141 7.792374 TTTATGGAAGCTTAGATGTGACATC 57.208 36.000 17.46 17.46 0.00 3.06
4843 6142 9.851686 TTATTTATGGAAGCTTAGATGTGACAT 57.148 29.630 0.00 0.00 0.00 3.06
4844 6143 9.109393 GTTATTTATGGAAGCTTAGATGTGACA 57.891 33.333 0.00 0.00 0.00 3.58
4845 6144 9.109393 TGTTATTTATGGAAGCTTAGATGTGAC 57.891 33.333 0.00 0.00 0.00 3.67
4846 6145 9.109393 GTGTTATTTATGGAAGCTTAGATGTGA 57.891 33.333 0.00 0.00 0.00 3.58
4847 6146 8.892723 TGTGTTATTTATGGAAGCTTAGATGTG 58.107 33.333 0.00 0.00 0.00 3.21
4848 6147 9.113838 CTGTGTTATTTATGGAAGCTTAGATGT 57.886 33.333 0.00 0.00 0.00 3.06
4849 6148 8.072567 GCTGTGTTATTTATGGAAGCTTAGATG 58.927 37.037 0.00 0.00 0.00 2.90
4850 6149 7.775093 TGCTGTGTTATTTATGGAAGCTTAGAT 59.225 33.333 0.00 0.00 0.00 1.98
4851 6150 7.109501 TGCTGTGTTATTTATGGAAGCTTAGA 58.890 34.615 0.00 0.00 0.00 2.10
4852 6151 7.320443 TGCTGTGTTATTTATGGAAGCTTAG 57.680 36.000 0.00 0.00 0.00 2.18
4853 6152 7.175816 TGTTGCTGTGTTATTTATGGAAGCTTA 59.824 33.333 0.00 0.00 0.00 3.09
4854 6153 6.015519 TGTTGCTGTGTTATTTATGGAAGCTT 60.016 34.615 0.00 0.00 0.00 3.74
4855 6154 5.476599 TGTTGCTGTGTTATTTATGGAAGCT 59.523 36.000 0.00 0.00 0.00 3.74
4856 6155 5.708948 TGTTGCTGTGTTATTTATGGAAGC 58.291 37.500 0.00 0.00 0.00 3.86
4857 6156 6.808212 CCTTGTTGCTGTGTTATTTATGGAAG 59.192 38.462 0.00 0.00 0.00 3.46
4858 6157 6.491745 TCCTTGTTGCTGTGTTATTTATGGAA 59.508 34.615 0.00 0.00 0.00 3.53
4859 6158 6.007076 TCCTTGTTGCTGTGTTATTTATGGA 58.993 36.000 0.00 0.00 0.00 3.41
4860 6159 6.266168 TCCTTGTTGCTGTGTTATTTATGG 57.734 37.500 0.00 0.00 0.00 2.74
4861 6160 7.144661 TGTTCCTTGTTGCTGTGTTATTTATG 58.855 34.615 0.00 0.00 0.00 1.90
4862 6161 7.283625 TGTTCCTTGTTGCTGTGTTATTTAT 57.716 32.000 0.00 0.00 0.00 1.40
4863 6162 6.701145 TGTTCCTTGTTGCTGTGTTATTTA 57.299 33.333 0.00 0.00 0.00 1.40
4864 6163 5.590530 TGTTCCTTGTTGCTGTGTTATTT 57.409 34.783 0.00 0.00 0.00 1.40
4865 6164 5.105554 TGTTGTTCCTTGTTGCTGTGTTATT 60.106 36.000 0.00 0.00 0.00 1.40
4866 6165 4.400884 TGTTGTTCCTTGTTGCTGTGTTAT 59.599 37.500 0.00 0.00 0.00 1.89
4867 6166 3.759086 TGTTGTTCCTTGTTGCTGTGTTA 59.241 39.130 0.00 0.00 0.00 2.41
4868 6167 2.560542 TGTTGTTCCTTGTTGCTGTGTT 59.439 40.909 0.00 0.00 0.00 3.32
4869 6168 2.166829 TGTTGTTCCTTGTTGCTGTGT 58.833 42.857 0.00 0.00 0.00 3.72
4870 6169 2.937469 TGTTGTTCCTTGTTGCTGTG 57.063 45.000 0.00 0.00 0.00 3.66
4871 6170 3.951775 TTTGTTGTTCCTTGTTGCTGT 57.048 38.095 0.00 0.00 0.00 4.40
4925 6224 0.108615 CTGTCCAGTAGGAGCAACCG 60.109 60.000 0.00 0.00 46.92 4.44
4939 6238 3.618690 AAATACCTGAGACTGCTGTCC 57.381 47.619 18.96 11.59 43.91 4.02
4965 6264 6.421801 CAGAAAGCGAAGGAAACAAATGAAAT 59.578 34.615 0.00 0.00 0.00 2.17
4969 6268 4.610945 ACAGAAAGCGAAGGAAACAAATG 58.389 39.130 0.00 0.00 0.00 2.32
4978 6277 3.134458 AGAACAGAACAGAAAGCGAAGG 58.866 45.455 0.00 0.00 0.00 3.46
5066 6365 8.179615 TCGTATAGGTATACATTTGTATGAGCG 58.820 37.037 12.41 7.81 41.03 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.