Multiple sequence alignment - TraesCS2D01G221000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G221000 chr2D 100.000 4270 0 0 1 4270 188511849 188507580 0.000000e+00 7886.0
1 TraesCS2D01G221000 chr2D 98.182 55 1 0 393 447 635071479 635071425 3.510000e-16 97.1
2 TraesCS2D01G221000 chr2B 93.184 2186 82 32 2131 4270 244588564 244586400 0.000000e+00 3149.0
3 TraesCS2D01G221000 chr2B 94.334 1606 47 17 510 2111 244590526 244588961 0.000000e+00 2422.0
4 TraesCS2D01G221000 chr2A 92.852 1441 46 12 1889 3289 202068684 202067261 0.000000e+00 2037.0
5 TraesCS2D01G221000 chr2A 93.064 1384 52 17 523 1889 202070388 202069032 0.000000e+00 1984.0
6 TraesCS2D01G221000 chr2A 84.879 496 44 17 3457 3949 202066758 202066291 5.000000e-129 472.0
7 TraesCS2D01G221000 chr2A 85.955 178 9 5 3302 3478 202067280 202067118 4.390000e-40 176.0
8 TraesCS2D01G221000 chr2A 85.455 165 11 2 3912 4076 202066287 202066136 4.420000e-35 159.0
9 TraesCS2D01G221000 chr5B 90.909 88 7 1 278 365 468639054 468639140 2.700000e-22 117.0
10 TraesCS2D01G221000 chr5B 98.182 55 1 0 393 447 130572442 130572388 3.510000e-16 97.1
11 TraesCS2D01G221000 chrUn 100.000 52 0 0 393 444 45097113 45097164 3.510000e-16 97.1
12 TraesCS2D01G221000 chrUn 98.182 55 1 0 393 447 416115971 416115917 3.510000e-16 97.1
13 TraesCS2D01G221000 chr7D 100.000 52 0 0 393 444 626646558 626646609 3.510000e-16 97.1
14 TraesCS2D01G221000 chr6D 100.000 52 0 0 393 444 159819197 159819248 3.510000e-16 97.1
15 TraesCS2D01G221000 chr6A 100.000 52 0 0 393 444 155842960 155843011 3.510000e-16 97.1
16 TraesCS2D01G221000 chr6A 98.182 55 1 0 393 447 375873099 375873045 3.510000e-16 97.1
17 TraesCS2D01G221000 chr1D 100.000 52 0 0 393 444 493800773 493800824 3.510000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G221000 chr2D 188507580 188511849 4269 True 7886.0 7886 100.000 1 4270 1 chr2D.!!$R1 4269
1 TraesCS2D01G221000 chr2B 244586400 244590526 4126 True 2785.5 3149 93.759 510 4270 2 chr2B.!!$R1 3760
2 TraesCS2D01G221000 chr2A 202066136 202070388 4252 True 965.6 2037 88.441 523 4076 5 chr2A.!!$R1 3553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.035598 TGCGTTCGAATCCTCCCAAA 59.964 50.0 0.00 0.0 0.00 3.28 F
742 744 0.039074 AGCAGAACGAAGAGGACGTG 60.039 55.0 0.00 0.0 43.16 4.49 F
1880 1900 0.314302 GCACGACCCTCGCTGTATAT 59.686 55.0 0.00 0.0 45.12 0.86 F
2404 3156 0.108424 ACTCCAGCAAGCTGATCGAC 60.108 55.0 22.76 0.0 46.30 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2187 2934 0.391793 GTAGCACTGCAGGAACCCTC 60.392 60.0 19.93 0.00 0.00 4.30 R
2190 2942 1.014564 GTCGTAGCACTGCAGGAACC 61.015 60.0 19.93 2.84 0.00 3.62 R
3042 3826 0.111061 TGAAACAGAGCCCAGTGCAT 59.889 50.0 0.00 0.00 44.83 3.96 R
3779 4985 0.378962 CGGGTTCACGTGCTTTTCAA 59.621 50.0 11.67 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.859411 TTTTGCAAAGTCGGTGAACTT 57.141 38.095 12.41 0.00 41.20 2.66
21 22 2.842208 TTGCAAAGTCGGTGAACTTG 57.158 45.000 0.00 0.00 39.40 3.16
22 23 1.745232 TGCAAAGTCGGTGAACTTGT 58.255 45.000 0.00 0.00 39.40 3.16
23 24 2.088423 TGCAAAGTCGGTGAACTTGTT 58.912 42.857 0.00 0.00 39.40 2.83
24 25 2.490115 TGCAAAGTCGGTGAACTTGTTT 59.510 40.909 0.00 0.00 39.40 2.83
25 26 3.057174 TGCAAAGTCGGTGAACTTGTTTT 60.057 39.130 0.00 0.00 39.40 2.43
26 27 3.924073 GCAAAGTCGGTGAACTTGTTTTT 59.076 39.130 0.00 0.00 39.40 1.94
77 78 8.941127 TTTTTGAACCTTTTTGAAAATCGTTG 57.059 26.923 7.37 0.00 0.00 4.10
78 79 7.891183 TTTGAACCTTTTTGAAAATCGTTGA 57.109 28.000 7.37 0.00 0.00 3.18
79 80 8.485976 TTTGAACCTTTTTGAAAATCGTTGAT 57.514 26.923 7.37 0.00 0.00 2.57
80 81 8.485976 TTGAACCTTTTTGAAAATCGTTGATT 57.514 26.923 7.37 0.00 33.25 2.57
81 82 7.904094 TGAACCTTTTTGAAAATCGTTGATTG 58.096 30.769 7.37 0.00 32.14 2.67
82 83 7.547370 TGAACCTTTTTGAAAATCGTTGATTGT 59.453 29.630 7.37 0.00 32.14 2.71
83 84 7.841915 ACCTTTTTGAAAATCGTTGATTGTT 57.158 28.000 0.00 0.00 32.14 2.83
84 85 8.262715 ACCTTTTTGAAAATCGTTGATTGTTT 57.737 26.923 0.00 0.00 32.14 2.83
85 86 8.726068 ACCTTTTTGAAAATCGTTGATTGTTTT 58.274 25.926 0.00 0.00 32.14 2.43
145 146 9.694137 TTTTTCTTTTTCGTTAGGTTTTCTGAA 57.306 25.926 0.00 0.00 0.00 3.02
146 147 9.694137 TTTTCTTTTTCGTTAGGTTTTCTGAAA 57.306 25.926 0.00 0.00 0.00 2.69
147 148 9.863845 TTTCTTTTTCGTTAGGTTTTCTGAAAT 57.136 25.926 3.31 0.00 0.00 2.17
148 149 9.511144 TTCTTTTTCGTTAGGTTTTCTGAAATC 57.489 29.630 3.31 3.24 0.00 2.17
149 150 8.899771 TCTTTTTCGTTAGGTTTTCTGAAATCT 58.100 29.630 3.31 7.53 39.49 2.40
150 151 8.850454 TTTTTCGTTAGGTTTTCTGAAATCTG 57.150 30.769 3.31 0.00 36.86 2.90
151 152 7.562454 TTTCGTTAGGTTTTCTGAAATCTGT 57.438 32.000 3.31 0.00 36.86 3.41
152 153 6.539649 TCGTTAGGTTTTCTGAAATCTGTG 57.460 37.500 3.31 1.34 36.86 3.66
153 154 5.468746 TCGTTAGGTTTTCTGAAATCTGTGG 59.531 40.000 3.31 0.62 36.86 4.17
154 155 5.468746 CGTTAGGTTTTCTGAAATCTGTGGA 59.531 40.000 3.31 0.00 36.86 4.02
155 156 6.565999 CGTTAGGTTTTCTGAAATCTGTGGAC 60.566 42.308 3.31 0.00 36.86 4.02
156 157 4.792068 AGGTTTTCTGAAATCTGTGGACA 58.208 39.130 3.31 0.00 34.94 4.02
157 158 5.388654 AGGTTTTCTGAAATCTGTGGACAT 58.611 37.500 3.31 0.00 34.94 3.06
158 159 5.835280 AGGTTTTCTGAAATCTGTGGACATT 59.165 36.000 3.31 0.00 34.94 2.71
159 160 6.015940 AGGTTTTCTGAAATCTGTGGACATTC 60.016 38.462 3.31 0.00 34.94 2.67
160 161 6.239008 GGTTTTCTGAAATCTGTGGACATTCA 60.239 38.462 3.31 0.00 32.97 2.57
161 162 6.957920 TTTCTGAAATCTGTGGACATTCAA 57.042 33.333 0.00 0.00 33.33 2.69
162 163 6.957920 TTCTGAAATCTGTGGACATTCAAA 57.042 33.333 0.00 0.00 33.33 2.69
163 164 7.528996 TTCTGAAATCTGTGGACATTCAAAT 57.471 32.000 0.00 0.00 33.33 2.32
164 165 7.528996 TCTGAAATCTGTGGACATTCAAATT 57.471 32.000 0.00 0.00 33.33 1.82
165 166 7.954835 TCTGAAATCTGTGGACATTCAAATTT 58.045 30.769 0.00 0.00 33.33 1.82
166 167 8.423349 TCTGAAATCTGTGGACATTCAAATTTT 58.577 29.630 0.00 0.00 33.33 1.82
167 168 8.367943 TGAAATCTGTGGACATTCAAATTTTG 57.632 30.769 2.59 2.59 31.82 2.44
168 169 7.986320 TGAAATCTGTGGACATTCAAATTTTGT 59.014 29.630 8.89 0.00 31.82 2.83
169 170 8.735692 AAATCTGTGGACATTCAAATTTTGTT 57.264 26.923 8.89 0.00 0.00 2.83
170 171 7.951530 ATCTGTGGACATTCAAATTTTGTTC 57.048 32.000 8.89 0.00 0.00 3.18
171 172 6.871844 TCTGTGGACATTCAAATTTTGTTCA 58.128 32.000 8.89 0.00 0.00 3.18
172 173 7.499292 TCTGTGGACATTCAAATTTTGTTCAT 58.501 30.769 8.89 0.00 31.82 2.57
173 174 7.986320 TCTGTGGACATTCAAATTTTGTTCATT 59.014 29.630 8.89 0.00 31.82 2.57
174 175 8.503458 TGTGGACATTCAAATTTTGTTCATTT 57.497 26.923 8.89 0.00 31.82 2.32
175 176 8.954350 TGTGGACATTCAAATTTTGTTCATTTT 58.046 25.926 8.89 0.00 31.82 1.82
176 177 9.786105 GTGGACATTCAAATTTTGTTCATTTTT 57.214 25.926 8.89 0.00 31.82 1.94
201 202 7.692908 TTTTCAAAAGGAATCACATTTCGTC 57.307 32.000 0.00 0.00 34.91 4.20
202 203 6.633500 TTCAAAAGGAATCACATTTCGTCT 57.367 33.333 0.00 0.00 31.11 4.18
203 204 7.737972 TTCAAAAGGAATCACATTTCGTCTA 57.262 32.000 0.00 0.00 31.11 2.59
204 205 7.364522 TCAAAAGGAATCACATTTCGTCTAG 57.635 36.000 0.00 0.00 31.11 2.43
205 206 6.934645 TCAAAAGGAATCACATTTCGTCTAGT 59.065 34.615 0.00 0.00 31.11 2.57
206 207 7.444183 TCAAAAGGAATCACATTTCGTCTAGTT 59.556 33.333 0.00 0.00 31.11 2.24
207 208 6.727824 AAGGAATCACATTTCGTCTAGTTG 57.272 37.500 0.00 0.00 0.00 3.16
208 209 5.794894 AGGAATCACATTTCGTCTAGTTGT 58.205 37.500 0.00 0.00 0.00 3.32
209 210 6.231211 AGGAATCACATTTCGTCTAGTTGTT 58.769 36.000 0.00 0.00 0.00 2.83
210 211 6.147821 AGGAATCACATTTCGTCTAGTTGTTG 59.852 38.462 0.00 0.00 0.00 3.33
211 212 5.862924 ATCACATTTCGTCTAGTTGTTGG 57.137 39.130 0.00 0.00 0.00 3.77
212 213 3.496884 TCACATTTCGTCTAGTTGTTGGC 59.503 43.478 0.00 0.00 0.00 4.52
213 214 2.812011 ACATTTCGTCTAGTTGTTGGCC 59.188 45.455 0.00 0.00 0.00 5.36
214 215 2.922740 TTTCGTCTAGTTGTTGGCCT 57.077 45.000 3.32 0.00 0.00 5.19
215 216 4.250464 CATTTCGTCTAGTTGTTGGCCTA 58.750 43.478 3.32 0.00 0.00 3.93
216 217 3.308438 TTCGTCTAGTTGTTGGCCTAC 57.692 47.619 10.70 10.70 0.00 3.18
217 218 2.522185 TCGTCTAGTTGTTGGCCTACT 58.478 47.619 18.31 11.40 0.00 2.57
218 219 3.689347 TCGTCTAGTTGTTGGCCTACTA 58.311 45.455 18.31 8.17 0.00 1.82
219 220 4.275810 TCGTCTAGTTGTTGGCCTACTAT 58.724 43.478 18.31 6.79 0.00 2.12
220 221 4.097437 TCGTCTAGTTGTTGGCCTACTATG 59.903 45.833 18.31 6.09 0.00 2.23
221 222 4.120589 GTCTAGTTGTTGGCCTACTATGC 58.879 47.826 18.31 6.00 0.00 3.14
222 223 3.772572 TCTAGTTGTTGGCCTACTATGCA 59.227 43.478 18.31 0.00 0.00 3.96
223 224 2.711542 AGTTGTTGGCCTACTATGCAC 58.288 47.619 18.31 7.32 0.00 4.57
224 225 2.305927 AGTTGTTGGCCTACTATGCACT 59.694 45.455 18.31 9.24 0.00 4.40
225 226 2.401583 TGTTGGCCTACTATGCACTG 57.598 50.000 18.31 0.00 0.00 3.66
226 227 1.017387 GTTGGCCTACTATGCACTGC 58.983 55.000 10.33 0.00 0.00 4.40
227 228 0.617935 TTGGCCTACTATGCACTGCA 59.382 50.000 6.09 6.09 44.86 4.41
228 229 0.178767 TGGCCTACTATGCACTGCAG 59.821 55.000 13.48 13.48 43.65 4.41
229 230 1.162800 GGCCTACTATGCACTGCAGC 61.163 60.000 15.27 1.39 43.65 5.25
230 231 0.179062 GCCTACTATGCACTGCAGCT 60.179 55.000 15.27 0.00 43.65 4.24
231 232 1.069204 GCCTACTATGCACTGCAGCTA 59.931 52.381 15.27 0.00 43.65 3.32
232 233 2.865670 GCCTACTATGCACTGCAGCTAG 60.866 54.545 15.27 11.99 43.65 3.42
233 234 2.363680 CCTACTATGCACTGCAGCTAGT 59.636 50.000 15.27 17.44 43.65 2.57
234 235 3.181471 CCTACTATGCACTGCAGCTAGTT 60.181 47.826 18.19 1.04 43.65 2.24
235 236 2.625737 ACTATGCACTGCAGCTAGTTG 58.374 47.619 15.27 5.14 43.65 3.16
236 237 1.938577 CTATGCACTGCAGCTAGTTGG 59.061 52.381 15.27 0.00 43.65 3.77
237 238 1.310933 ATGCACTGCAGCTAGTTGGC 61.311 55.000 15.27 6.95 43.65 4.52
238 239 3.031964 GCACTGCAGCTAGTTGGCG 62.032 63.158 15.27 1.83 37.29 5.69
239 240 1.669115 CACTGCAGCTAGTTGGCGT 60.669 57.895 15.27 2.37 37.29 5.68
240 241 1.669115 ACTGCAGCTAGTTGGCGTG 60.669 57.895 15.27 2.18 37.29 5.34
241 242 3.031964 CTGCAGCTAGTTGGCGTGC 62.032 63.158 8.78 1.28 37.11 5.34
242 243 4.152625 GCAGCTAGTTGGCGTGCG 62.153 66.667 8.78 0.00 37.29 5.34
243 244 2.738521 CAGCTAGTTGGCGTGCGT 60.739 61.111 0.00 0.00 37.29 5.24
244 245 2.030562 AGCTAGTTGGCGTGCGTT 59.969 55.556 0.00 0.00 37.29 4.84
245 246 2.027625 AGCTAGTTGGCGTGCGTTC 61.028 57.895 0.00 0.00 37.29 3.95
246 247 2.769617 CTAGTTGGCGTGCGTTCG 59.230 61.111 0.00 0.00 0.00 3.95
247 248 1.731613 CTAGTTGGCGTGCGTTCGA 60.732 57.895 5.66 0.00 0.00 3.71
248 249 1.279527 CTAGTTGGCGTGCGTTCGAA 61.280 55.000 0.00 0.00 0.00 3.71
249 250 0.668096 TAGTTGGCGTGCGTTCGAAT 60.668 50.000 0.00 0.00 0.00 3.34
250 251 1.509162 GTTGGCGTGCGTTCGAATC 60.509 57.895 0.00 0.00 0.00 2.52
251 252 2.673114 TTGGCGTGCGTTCGAATCC 61.673 57.895 0.00 0.00 0.00 3.01
252 253 2.813908 GGCGTGCGTTCGAATCCT 60.814 61.111 0.00 0.00 0.00 3.24
253 254 2.695646 GCGTGCGTTCGAATCCTC 59.304 61.111 0.00 0.00 0.00 3.71
254 255 2.799540 GCGTGCGTTCGAATCCTCC 61.800 63.158 0.00 0.00 0.00 4.30
255 256 2.165301 CGTGCGTTCGAATCCTCCC 61.165 63.158 0.00 0.00 0.00 4.30
256 257 1.079405 GTGCGTTCGAATCCTCCCA 60.079 57.895 0.00 0.00 0.00 4.37
257 258 0.672401 GTGCGTTCGAATCCTCCCAA 60.672 55.000 0.00 0.00 0.00 4.12
258 259 0.035598 TGCGTTCGAATCCTCCCAAA 59.964 50.000 0.00 0.00 0.00 3.28
259 260 1.161843 GCGTTCGAATCCTCCCAAAA 58.838 50.000 0.00 0.00 0.00 2.44
260 261 1.130561 GCGTTCGAATCCTCCCAAAAG 59.869 52.381 0.00 0.00 0.00 2.27
261 262 1.130561 CGTTCGAATCCTCCCAAAAGC 59.869 52.381 0.00 0.00 0.00 3.51
262 263 1.130561 GTTCGAATCCTCCCAAAAGCG 59.869 52.381 0.00 0.00 0.00 4.68
263 264 0.611200 TCGAATCCTCCCAAAAGCGA 59.389 50.000 0.00 0.00 0.00 4.93
264 265 1.209504 TCGAATCCTCCCAAAAGCGAT 59.790 47.619 0.00 0.00 0.00 4.58
265 266 1.331756 CGAATCCTCCCAAAAGCGATG 59.668 52.381 0.00 0.00 0.00 3.84
266 267 2.369394 GAATCCTCCCAAAAGCGATGT 58.631 47.619 0.00 0.00 0.00 3.06
267 268 2.514458 ATCCTCCCAAAAGCGATGTT 57.486 45.000 0.00 0.00 0.00 2.71
268 269 2.286365 TCCTCCCAAAAGCGATGTTT 57.714 45.000 0.00 0.00 0.00 2.83
269 270 2.159382 TCCTCCCAAAAGCGATGTTTC 58.841 47.619 0.00 0.00 0.00 2.78
271 272 0.878416 TCCCAAAAGCGATGTTTCGG 59.122 50.000 0.00 0.00 45.59 4.30
272 273 0.109319 CCCAAAAGCGATGTTTCGGG 60.109 55.000 0.00 0.00 45.59 5.14
273 274 0.109319 CCAAAAGCGATGTTTCGGGG 60.109 55.000 0.00 0.00 45.59 5.73
274 275 0.596082 CAAAAGCGATGTTTCGGGGT 59.404 50.000 0.00 0.00 45.59 4.95
275 276 0.596082 AAAAGCGATGTTTCGGGGTG 59.404 50.000 0.00 0.00 45.59 4.61
276 277 1.241315 AAAGCGATGTTTCGGGGTGG 61.241 55.000 0.00 0.00 45.59 4.61
277 278 2.046700 GCGATGTTTCGGGGTGGA 60.047 61.111 0.00 0.00 45.59 4.02
278 279 1.451387 GCGATGTTTCGGGGTGGAT 60.451 57.895 0.00 0.00 45.59 3.41
279 280 1.029947 GCGATGTTTCGGGGTGGATT 61.030 55.000 0.00 0.00 45.59 3.01
280 281 1.459450 CGATGTTTCGGGGTGGATTT 58.541 50.000 0.00 0.00 41.74 2.17
281 282 1.816224 CGATGTTTCGGGGTGGATTTT 59.184 47.619 0.00 0.00 41.74 1.82
282 283 2.230266 CGATGTTTCGGGGTGGATTTTT 59.770 45.455 0.00 0.00 41.74 1.94
318 319 1.745232 TTTTTCACAGTGTCCTGCGT 58.255 45.000 0.00 0.00 42.81 5.24
319 320 1.013596 TTTTCACAGTGTCCTGCGTG 58.986 50.000 0.00 0.00 42.81 5.34
320 321 0.107897 TTTCACAGTGTCCTGCGTGT 60.108 50.000 0.00 0.00 42.81 4.49
321 322 0.107897 TTCACAGTGTCCTGCGTGTT 60.108 50.000 0.00 0.00 42.81 3.32
322 323 0.529773 TCACAGTGTCCTGCGTGTTC 60.530 55.000 0.00 0.00 42.81 3.18
323 324 0.809636 CACAGTGTCCTGCGTGTTCA 60.810 55.000 0.00 0.00 42.81 3.18
324 325 0.106708 ACAGTGTCCTGCGTGTTCAT 59.893 50.000 0.00 0.00 42.81 2.57
325 326 0.514255 CAGTGTCCTGCGTGTTCATG 59.486 55.000 0.00 0.00 0.00 3.07
326 327 0.603707 AGTGTCCTGCGTGTTCATGG 60.604 55.000 0.00 0.00 0.00 3.66
327 328 1.302431 TGTCCTGCGTGTTCATGGG 60.302 57.895 0.00 0.00 0.00 4.00
328 329 2.359850 TCCTGCGTGTTCATGGGC 60.360 61.111 0.00 0.00 0.00 5.36
329 330 3.443045 CCTGCGTGTTCATGGGCC 61.443 66.667 0.00 0.00 0.00 5.80
330 331 3.803082 CTGCGTGTTCATGGGCCG 61.803 66.667 0.00 0.00 0.00 6.13
345 346 4.388499 CCGGCCCACTAACGTGCT 62.388 66.667 0.00 0.00 39.86 4.40
346 347 3.118454 CGGCCCACTAACGTGCTG 61.118 66.667 0.00 0.00 39.86 4.41
347 348 3.431725 GGCCCACTAACGTGCTGC 61.432 66.667 0.00 0.00 39.86 5.25
348 349 2.668212 GCCCACTAACGTGCTGCA 60.668 61.111 0.00 0.00 39.86 4.41
349 350 2.680913 GCCCACTAACGTGCTGCAG 61.681 63.158 10.11 10.11 39.86 4.41
350 351 1.301716 CCCACTAACGTGCTGCAGT 60.302 57.895 16.64 0.23 39.86 4.40
351 352 1.568612 CCCACTAACGTGCTGCAGTG 61.569 60.000 16.64 7.30 39.86 3.66
352 353 1.862123 CACTAACGTGCTGCAGTGG 59.138 57.895 16.64 7.40 35.77 4.00
353 354 1.301716 ACTAACGTGCTGCAGTGGG 60.302 57.895 16.64 7.02 0.00 4.61
354 355 2.668212 TAACGTGCTGCAGTGGGC 60.668 61.111 16.64 1.48 45.13 5.36
363 364 3.512516 GCAGTGGGCGCCTGAATC 61.513 66.667 28.56 9.87 31.38 2.52
364 365 2.825836 CAGTGGGCGCCTGAATCC 60.826 66.667 28.56 9.02 31.38 3.01
365 366 3.329889 AGTGGGCGCCTGAATCCA 61.330 61.111 28.56 12.03 0.00 3.41
366 367 3.134127 GTGGGCGCCTGAATCCAC 61.134 66.667 28.56 20.41 42.11 4.02
367 368 4.424711 TGGGCGCCTGAATCCACC 62.425 66.667 28.56 6.48 0.00 4.61
368 369 4.424711 GGGCGCCTGAATCCACCA 62.425 66.667 28.56 0.00 0.00 4.17
369 370 2.825836 GGCGCCTGAATCCACCAG 60.826 66.667 22.15 0.00 0.00 4.00
393 394 5.763088 GGAAACCAAAGAAGAGCTAGTTTG 58.237 41.667 0.00 0.00 29.69 2.93
399 400 6.419980 CAAAGAAGAGCTAGTTTGGATGAG 57.580 41.667 0.00 0.00 0.00 2.90
400 401 4.135747 AGAAGAGCTAGTTTGGATGAGC 57.864 45.455 0.00 0.00 35.07 4.26
402 403 3.540314 AGAGCTAGTTTGGATGAGCTG 57.460 47.619 0.00 0.00 45.15 4.24
403 404 3.102972 AGAGCTAGTTTGGATGAGCTGA 58.897 45.455 0.00 0.00 45.15 4.26
404 405 3.710677 AGAGCTAGTTTGGATGAGCTGAT 59.289 43.478 0.00 0.00 45.15 2.90
405 406 4.163839 AGAGCTAGTTTGGATGAGCTGATT 59.836 41.667 0.00 0.00 45.15 2.57
406 407 4.853007 AGCTAGTTTGGATGAGCTGATTT 58.147 39.130 0.00 0.00 43.53 2.17
407 408 4.880696 AGCTAGTTTGGATGAGCTGATTTC 59.119 41.667 0.00 0.00 43.53 2.17
408 409 4.880696 GCTAGTTTGGATGAGCTGATTTCT 59.119 41.667 0.00 0.00 32.04 2.52
409 410 5.356470 GCTAGTTTGGATGAGCTGATTTCTT 59.644 40.000 0.00 0.00 32.04 2.52
410 411 6.127786 GCTAGTTTGGATGAGCTGATTTCTTT 60.128 38.462 0.00 0.00 32.04 2.52
411 412 6.661304 AGTTTGGATGAGCTGATTTCTTTT 57.339 33.333 0.00 0.00 0.00 2.27
412 413 6.685657 AGTTTGGATGAGCTGATTTCTTTTC 58.314 36.000 0.00 0.00 0.00 2.29
413 414 6.266103 AGTTTGGATGAGCTGATTTCTTTTCA 59.734 34.615 0.00 0.00 0.00 2.69
414 415 5.633830 TGGATGAGCTGATTTCTTTTCAC 57.366 39.130 0.00 0.00 0.00 3.18
415 416 5.319453 TGGATGAGCTGATTTCTTTTCACT 58.681 37.500 0.00 0.00 0.00 3.41
416 417 5.413833 TGGATGAGCTGATTTCTTTTCACTC 59.586 40.000 0.00 0.00 0.00 3.51
417 418 5.163673 GGATGAGCTGATTTCTTTTCACTCC 60.164 44.000 0.00 0.00 0.00 3.85
418 419 4.978099 TGAGCTGATTTCTTTTCACTCCT 58.022 39.130 0.00 0.00 0.00 3.69
419 420 4.758674 TGAGCTGATTTCTTTTCACTCCTG 59.241 41.667 0.00 0.00 0.00 3.86
420 421 4.723309 AGCTGATTTCTTTTCACTCCTGT 58.277 39.130 0.00 0.00 0.00 4.00
421 422 5.136105 AGCTGATTTCTTTTCACTCCTGTT 58.864 37.500 0.00 0.00 0.00 3.16
422 423 5.595952 AGCTGATTTCTTTTCACTCCTGTTT 59.404 36.000 0.00 0.00 0.00 2.83
423 424 5.917447 GCTGATTTCTTTTCACTCCTGTTTC 59.083 40.000 0.00 0.00 0.00 2.78
424 425 6.460123 GCTGATTTCTTTTCACTCCTGTTTCA 60.460 38.462 0.00 0.00 0.00 2.69
425 426 7.031226 TGATTTCTTTTCACTCCTGTTTCAG 57.969 36.000 0.00 0.00 0.00 3.02
426 427 6.828273 TGATTTCTTTTCACTCCTGTTTCAGA 59.172 34.615 0.00 0.00 32.44 3.27
427 428 6.683974 TTTCTTTTCACTCCTGTTTCAGAG 57.316 37.500 0.00 0.00 32.44 3.35
428 429 5.614324 TCTTTTCACTCCTGTTTCAGAGA 57.386 39.130 0.00 0.00 32.44 3.10
429 430 6.179906 TCTTTTCACTCCTGTTTCAGAGAT 57.820 37.500 0.00 0.00 32.44 2.75
430 431 7.303182 TCTTTTCACTCCTGTTTCAGAGATA 57.697 36.000 0.00 0.00 32.44 1.98
431 432 7.155328 TCTTTTCACTCCTGTTTCAGAGATAC 58.845 38.462 0.00 0.00 32.44 2.24
432 433 6.419484 TTTCACTCCTGTTTCAGAGATACA 57.581 37.500 0.00 0.00 32.44 2.29
433 434 6.419484 TTCACTCCTGTTTCAGAGATACAA 57.581 37.500 0.00 0.00 32.44 2.41
434 435 6.419484 TCACTCCTGTTTCAGAGATACAAA 57.581 37.500 0.00 0.00 32.44 2.83
435 436 6.826668 TCACTCCTGTTTCAGAGATACAAAA 58.173 36.000 0.00 0.00 32.44 2.44
436 437 6.706270 TCACTCCTGTTTCAGAGATACAAAAC 59.294 38.462 0.00 0.00 32.44 2.43
437 438 6.483307 CACTCCTGTTTCAGAGATACAAAACA 59.517 38.462 0.00 0.00 38.80 2.83
438 439 7.012327 CACTCCTGTTTCAGAGATACAAAACAA 59.988 37.037 0.00 0.00 40.10 2.83
439 440 7.556275 ACTCCTGTTTCAGAGATACAAAACAAA 59.444 33.333 0.00 0.00 40.10 2.83
440 441 8.287439 TCCTGTTTCAGAGATACAAAACAAAA 57.713 30.769 0.00 0.00 40.10 2.44
441 442 8.405531 TCCTGTTTCAGAGATACAAAACAAAAG 58.594 33.333 0.00 0.00 40.10 2.27
442 443 8.190784 CCTGTTTCAGAGATACAAAACAAAAGT 58.809 33.333 0.00 0.00 40.10 2.66
447 448 8.311650 TCAGAGATACAAAACAAAAGTAGAGC 57.688 34.615 0.00 0.00 0.00 4.09
448 449 8.150945 TCAGAGATACAAAACAAAAGTAGAGCT 58.849 33.333 0.00 0.00 0.00 4.09
449 450 8.439286 CAGAGATACAAAACAAAAGTAGAGCTC 58.561 37.037 5.27 5.27 0.00 4.09
450 451 7.604545 AGAGATACAAAACAAAAGTAGAGCTCC 59.395 37.037 10.93 0.00 0.00 4.70
451 452 6.655425 AGATACAAAACAAAAGTAGAGCTCCC 59.345 38.462 10.93 0.84 0.00 4.30
452 453 3.564225 ACAAAACAAAAGTAGAGCTCCCG 59.436 43.478 10.93 0.00 0.00 5.14
453 454 1.809684 AACAAAAGTAGAGCTCCCGC 58.190 50.000 10.93 0.47 0.00 6.13
454 455 0.389948 ACAAAAGTAGAGCTCCCGCG 60.390 55.000 10.93 0.00 42.32 6.46
455 456 1.084370 CAAAAGTAGAGCTCCCGCGG 61.084 60.000 21.04 21.04 42.32 6.46
456 457 1.255667 AAAAGTAGAGCTCCCGCGGA 61.256 55.000 30.73 12.25 42.32 5.54
457 458 1.946475 AAAGTAGAGCTCCCGCGGAC 61.946 60.000 30.73 15.38 42.32 4.79
458 459 4.253257 GTAGAGCTCCCGCGGACG 62.253 72.222 30.73 18.25 42.32 4.79
459 460 4.478371 TAGAGCTCCCGCGGACGA 62.478 66.667 30.73 15.99 43.93 4.20
469 470 3.519930 GCGGACGAGAGGGAGGAC 61.520 72.222 0.00 0.00 0.00 3.85
470 471 2.272797 CGGACGAGAGGGAGGACT 59.727 66.667 0.00 0.00 0.00 3.85
471 472 2.115911 CGGACGAGAGGGAGGACTG 61.116 68.421 0.00 0.00 0.00 3.51
472 473 1.303615 GGACGAGAGGGAGGACTGA 59.696 63.158 0.00 0.00 0.00 3.41
473 474 0.106419 GGACGAGAGGGAGGACTGAT 60.106 60.000 0.00 0.00 0.00 2.90
474 475 1.314730 GACGAGAGGGAGGACTGATC 58.685 60.000 0.00 0.00 0.00 2.92
475 476 0.106419 ACGAGAGGGAGGACTGATCC 60.106 60.000 0.00 0.00 46.69 3.36
586 587 2.040813 AGCCTGTCCACATGTTGAATCT 59.959 45.455 0.39 0.00 0.00 2.40
647 648 6.200854 GCCAAAACCAAAGAGACAAATAACAG 59.799 38.462 0.00 0.00 0.00 3.16
742 744 0.039074 AGCAGAACGAAGAGGACGTG 60.039 55.000 0.00 0.00 43.16 4.49
759 761 1.268285 CGTGAACGAAAACCACATGCA 60.268 47.619 0.00 0.00 43.02 3.96
882 888 2.824041 ACGCGGATTCCATGGCAC 60.824 61.111 12.47 0.21 0.00 5.01
937 943 3.972403 ACGCCAAAACCACAAAACTATC 58.028 40.909 0.00 0.00 0.00 2.08
966 972 1.804748 CAGAAACAAGTACGGGAAGCC 59.195 52.381 0.00 0.00 0.00 4.35
1111 1117 2.267642 CGGCCACCGGAAGAATCA 59.732 61.111 9.46 0.00 44.15 2.57
1211 1217 1.144913 ACCACAGCCACAGGTACATTT 59.855 47.619 0.00 0.00 32.92 2.32
1480 1500 2.742372 CGCCGAGAACAAGGTGGG 60.742 66.667 0.00 0.00 34.57 4.61
1481 1501 2.430367 GCCGAGAACAAGGTGGGT 59.570 61.111 0.00 0.00 0.00 4.51
1487 1507 1.227853 GAACAAGGTGGGTGACGCT 60.228 57.895 0.31 0.00 0.00 5.07
1879 1899 1.731700 GCACGACCCTCGCTGTATA 59.268 57.895 0.00 0.00 45.12 1.47
1880 1900 0.314302 GCACGACCCTCGCTGTATAT 59.686 55.000 0.00 0.00 45.12 0.86
1881 1901 1.666311 GCACGACCCTCGCTGTATATC 60.666 57.143 0.00 0.00 45.12 1.63
1883 1903 1.880675 ACGACCCTCGCTGTATATCAG 59.119 52.381 0.00 0.00 45.12 2.90
1884 1904 2.152016 CGACCCTCGCTGTATATCAGA 58.848 52.381 6.41 0.00 46.27 3.27
1887 2253 2.887783 ACCCTCGCTGTATATCAGACTG 59.112 50.000 0.00 0.00 46.27 3.51
1904 2270 8.627208 ATCAGACTGACACAAATTAATCAACT 57.373 30.769 7.47 0.00 0.00 3.16
1915 2281 8.967218 CACAAATTAATCAACTGGTTACTTGTG 58.033 33.333 15.61 15.61 32.93 3.33
2125 2872 3.069586 ACGCTCAAATCCCGAGATATTCA 59.930 43.478 0.00 0.00 31.84 2.57
2126 2873 3.677121 CGCTCAAATCCCGAGATATTCAG 59.323 47.826 0.00 0.00 31.84 3.02
2162 2909 5.317808 TGAGAACTACTCTAGCACTCTGTT 58.682 41.667 0.00 0.00 45.13 3.16
2172 2919 1.145803 GCACTCTGTTACGGTTGGTC 58.854 55.000 0.00 0.00 0.00 4.02
2179 2926 2.946990 CTGTTACGGTTGGTCCAAGTTT 59.053 45.455 3.96 0.00 35.57 2.66
2180 2927 2.683867 TGTTACGGTTGGTCCAAGTTTG 59.316 45.455 3.96 0.00 35.57 2.93
2181 2928 1.310904 TACGGTTGGTCCAAGTTTGC 58.689 50.000 3.96 0.00 35.57 3.68
2187 2934 4.368315 GGTTGGTCCAAGTTTGCTAAAAG 58.632 43.478 3.96 0.00 35.97 2.27
2190 2942 3.888930 TGGTCCAAGTTTGCTAAAAGAGG 59.111 43.478 0.00 0.00 0.00 3.69
2404 3156 0.108424 ACTCCAGCAAGCTGATCGAC 60.108 55.000 22.76 0.00 46.30 4.20
2502 3254 1.088340 GCACTGACATCTGCAGCGAT 61.088 55.000 9.47 0.00 36.86 4.58
2510 3286 4.694982 TGACATCTGCAGCGATAAAGAAAA 59.305 37.500 9.47 0.00 0.00 2.29
2988 3765 0.602638 TCGTCAGGAAAATGCACGCT 60.603 50.000 0.00 0.00 0.00 5.07
3042 3826 1.000607 GTGAGCCTGTGACTTACGACA 60.001 52.381 0.00 0.00 0.00 4.35
3046 3830 1.939381 GCCTGTGACTTACGACATGCA 60.939 52.381 0.00 0.00 34.81 3.96
3054 3838 0.391130 TTACGACATGCACTGGGCTC 60.391 55.000 2.50 0.00 45.15 4.70
3280 4088 0.755686 TTGGGTTGAAAATGCCGCTT 59.244 45.000 0.00 0.00 0.00 4.68
3420 4230 3.118629 TCACTCTCAGCAATATGTCCACC 60.119 47.826 0.00 0.00 0.00 4.61
3429 4239 6.211184 TCAGCAATATGTCCACCAAAAAGAAT 59.789 34.615 0.00 0.00 0.00 2.40
3430 4240 7.395772 TCAGCAATATGTCCACCAAAAAGAATA 59.604 33.333 0.00 0.00 0.00 1.75
3431 4241 7.703621 CAGCAATATGTCCACCAAAAAGAATAG 59.296 37.037 0.00 0.00 0.00 1.73
3552 4743 2.105128 GGACTCGCGGGACTGATG 59.895 66.667 15.95 0.00 0.00 3.07
3557 4748 0.248825 CTCGCGGGACTGATGAGAAG 60.249 60.000 0.00 0.00 0.00 2.85
3597 4788 3.416119 TTACGCCAAGACTCGATGTAG 57.584 47.619 0.00 0.00 0.00 2.74
3643 4844 1.438651 GTACGTCTGCCTGCATTCAA 58.561 50.000 0.00 0.00 0.00 2.69
3666 4867 0.975135 ATGCCCCTCGATCAGATCAG 59.025 55.000 11.12 6.98 0.00 2.90
3667 4868 0.106015 TGCCCCTCGATCAGATCAGA 60.106 55.000 11.12 7.77 0.00 3.27
3668 4869 1.265236 GCCCCTCGATCAGATCAGAT 58.735 55.000 11.12 0.00 0.00 2.90
3669 4870 1.204467 GCCCCTCGATCAGATCAGATC 59.796 57.143 16.10 16.10 40.76 2.75
3670 4871 2.523245 CCCCTCGATCAGATCAGATCA 58.477 52.381 23.21 12.23 43.61 2.92
3671 4872 2.492881 CCCCTCGATCAGATCAGATCAG 59.507 54.545 23.21 18.52 43.61 2.90
3768 4974 0.872388 GTTGTGTAGTGGCCTTTCCG 59.128 55.000 3.32 0.00 37.80 4.30
3777 4983 2.755103 AGTGGCCTTTCCGAAATGATTC 59.245 45.455 3.32 0.00 37.80 2.52
3830 5036 1.136305 GGAGCAGCAATGGTACGAGTA 59.864 52.381 0.00 0.00 0.00 2.59
3885 5095 4.141937 TGGAAACGTGCATAATAGAGAGCT 60.142 41.667 0.00 0.00 0.00 4.09
4000 5251 2.778659 GACGTACGTACTGACATGACC 58.221 52.381 22.87 0.00 0.00 4.02
4011 5262 1.833630 TGACATGACCTGACCTGATCC 59.166 52.381 0.00 0.00 0.00 3.36
4017 5268 0.995024 ACCTGACCTGATCCCTTTGG 59.005 55.000 0.00 0.00 0.00 3.28
4018 5269 0.257039 CCTGACCTGATCCCTTTGGG 59.743 60.000 0.00 0.00 46.11 4.12
4198 5458 0.100861 GAAGAGCGTAAGAGACCCCG 59.899 60.000 0.00 0.00 43.02 5.73
4199 5459 1.946475 AAGAGCGTAAGAGACCCCGC 61.946 60.000 0.00 0.00 46.07 6.13
4249 5511 0.319555 CGATCGGCACCACGGATTAT 60.320 55.000 7.38 0.00 38.36 1.28
4262 5524 4.929211 CCACGGATTATCAGCATCGAAATA 59.071 41.667 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.057174 ACAAGTTCACCGACTTTGCAAAA 60.057 39.130 13.84 0.00 37.76 2.44
1 2 2.490115 ACAAGTTCACCGACTTTGCAAA 59.510 40.909 12.14 12.14 37.76 3.68
2 3 2.088423 ACAAGTTCACCGACTTTGCAA 58.912 42.857 0.00 0.00 37.76 4.08
3 4 1.745232 ACAAGTTCACCGACTTTGCA 58.255 45.000 0.00 0.00 37.76 4.08
4 5 2.844122 AACAAGTTCACCGACTTTGC 57.156 45.000 0.00 0.00 37.76 3.68
51 52 9.553418 CAACGATTTTCAAAAAGGTTCAAAAAT 57.447 25.926 0.00 0.00 30.78 1.82
52 53 8.774586 TCAACGATTTTCAAAAAGGTTCAAAAA 58.225 25.926 0.00 0.00 30.78 1.94
53 54 8.311650 TCAACGATTTTCAAAAAGGTTCAAAA 57.688 26.923 0.00 0.00 30.78 2.44
54 55 7.891183 TCAACGATTTTCAAAAAGGTTCAAA 57.109 28.000 0.00 0.00 30.78 2.69
55 56 8.386606 CAATCAACGATTTTCAAAAAGGTTCAA 58.613 29.630 0.00 0.00 30.78 2.69
56 57 7.547370 ACAATCAACGATTTTCAAAAAGGTTCA 59.453 29.630 0.00 0.00 30.78 3.18
57 58 7.905126 ACAATCAACGATTTTCAAAAAGGTTC 58.095 30.769 0.00 0.00 30.78 3.62
58 59 7.841915 ACAATCAACGATTTTCAAAAAGGTT 57.158 28.000 0.00 0.00 32.30 3.50
59 60 7.841915 AACAATCAACGATTTTCAAAAAGGT 57.158 28.000 0.00 0.00 28.87 3.50
119 120 9.694137 TTCAGAAAACCTAACGAAAAAGAAAAA 57.306 25.926 0.00 0.00 0.00 1.94
120 121 9.694137 TTTCAGAAAACCTAACGAAAAAGAAAA 57.306 25.926 0.00 0.00 0.00 2.29
121 122 9.863845 ATTTCAGAAAACCTAACGAAAAAGAAA 57.136 25.926 0.00 0.00 0.00 2.52
122 123 9.511144 GATTTCAGAAAACCTAACGAAAAAGAA 57.489 29.630 0.00 0.00 0.00 2.52
123 124 8.899771 AGATTTCAGAAAACCTAACGAAAAAGA 58.100 29.630 0.00 0.00 0.00 2.52
124 125 8.958043 CAGATTTCAGAAAACCTAACGAAAAAG 58.042 33.333 0.00 0.00 0.00 2.27
125 126 8.463607 ACAGATTTCAGAAAACCTAACGAAAAA 58.536 29.630 0.00 0.00 0.00 1.94
126 127 7.913297 CACAGATTTCAGAAAACCTAACGAAAA 59.087 33.333 0.00 0.00 0.00 2.29
127 128 7.414436 CACAGATTTCAGAAAACCTAACGAAA 58.586 34.615 0.00 0.00 0.00 3.46
128 129 6.017440 CCACAGATTTCAGAAAACCTAACGAA 60.017 38.462 0.00 0.00 0.00 3.85
129 130 5.468746 CCACAGATTTCAGAAAACCTAACGA 59.531 40.000 0.00 0.00 0.00 3.85
130 131 5.468746 TCCACAGATTTCAGAAAACCTAACG 59.531 40.000 0.00 0.00 0.00 3.18
131 132 6.262273 TGTCCACAGATTTCAGAAAACCTAAC 59.738 38.462 0.00 0.00 0.00 2.34
132 133 6.361433 TGTCCACAGATTTCAGAAAACCTAA 58.639 36.000 0.00 0.00 0.00 2.69
133 134 5.935945 TGTCCACAGATTTCAGAAAACCTA 58.064 37.500 0.00 0.00 0.00 3.08
134 135 4.792068 TGTCCACAGATTTCAGAAAACCT 58.208 39.130 0.00 0.00 0.00 3.50
135 136 5.712152 ATGTCCACAGATTTCAGAAAACC 57.288 39.130 0.00 0.00 0.00 3.27
136 137 6.738114 TGAATGTCCACAGATTTCAGAAAAC 58.262 36.000 0.00 0.00 0.00 2.43
137 138 6.957920 TGAATGTCCACAGATTTCAGAAAA 57.042 33.333 0.00 0.00 0.00 2.29
138 139 6.957920 TTGAATGTCCACAGATTTCAGAAA 57.042 33.333 0.00 0.00 32.14 2.52
139 140 6.957920 TTTGAATGTCCACAGATTTCAGAA 57.042 33.333 0.00 0.00 32.14 3.02
140 141 7.528996 AATTTGAATGTCCACAGATTTCAGA 57.471 32.000 0.00 0.00 32.14 3.27
141 142 8.492748 CAAAATTTGAATGTCCACAGATTTCAG 58.507 33.333 0.00 0.00 32.43 3.02
142 143 7.986320 ACAAAATTTGAATGTCCACAGATTTCA 59.014 29.630 13.19 0.00 32.43 2.69
143 144 8.369218 ACAAAATTTGAATGTCCACAGATTTC 57.631 30.769 13.19 0.00 32.43 2.17
144 145 8.735692 AACAAAATTTGAATGTCCACAGATTT 57.264 26.923 13.19 0.00 34.11 2.17
145 146 7.986320 TGAACAAAATTTGAATGTCCACAGATT 59.014 29.630 13.19 0.00 0.00 2.40
146 147 7.499292 TGAACAAAATTTGAATGTCCACAGAT 58.501 30.769 13.19 0.00 0.00 2.90
147 148 6.871844 TGAACAAAATTTGAATGTCCACAGA 58.128 32.000 13.19 0.00 0.00 3.41
148 149 7.718272 ATGAACAAAATTTGAATGTCCACAG 57.282 32.000 13.19 0.00 0.00 3.66
149 150 8.503458 AAATGAACAAAATTTGAATGTCCACA 57.497 26.923 13.19 1.67 0.00 4.17
150 151 9.786105 AAAAATGAACAAAATTTGAATGTCCAC 57.214 25.926 13.19 0.00 0.00 4.02
176 177 7.978975 AGACGAAATGTGATTCCTTTTGAAAAA 59.021 29.630 0.00 0.00 36.33 1.94
177 178 7.488322 AGACGAAATGTGATTCCTTTTGAAAA 58.512 30.769 0.00 0.00 36.33 2.29
178 179 7.038154 AGACGAAATGTGATTCCTTTTGAAA 57.962 32.000 0.00 0.00 36.33 2.69
179 180 6.633500 AGACGAAATGTGATTCCTTTTGAA 57.367 33.333 0.00 0.00 37.38 2.69
180 181 6.934645 ACTAGACGAAATGTGATTCCTTTTGA 59.065 34.615 0.00 0.00 0.00 2.69
181 182 7.133891 ACTAGACGAAATGTGATTCCTTTTG 57.866 36.000 0.00 0.00 0.00 2.44
182 183 7.228706 ACAACTAGACGAAATGTGATTCCTTTT 59.771 33.333 0.00 0.00 0.00 2.27
183 184 6.710744 ACAACTAGACGAAATGTGATTCCTTT 59.289 34.615 0.00 0.00 0.00 3.11
184 185 6.231211 ACAACTAGACGAAATGTGATTCCTT 58.769 36.000 0.00 0.00 0.00 3.36
185 186 5.794894 ACAACTAGACGAAATGTGATTCCT 58.205 37.500 0.00 0.00 0.00 3.36
186 187 6.307155 CAACAACTAGACGAAATGTGATTCC 58.693 40.000 0.00 0.00 0.00 3.01
187 188 6.307155 CCAACAACTAGACGAAATGTGATTC 58.693 40.000 0.00 0.00 0.00 2.52
188 189 5.334879 GCCAACAACTAGACGAAATGTGATT 60.335 40.000 0.00 0.00 0.00 2.57
189 190 4.154195 GCCAACAACTAGACGAAATGTGAT 59.846 41.667 0.00 0.00 0.00 3.06
190 191 3.496884 GCCAACAACTAGACGAAATGTGA 59.503 43.478 0.00 0.00 0.00 3.58
191 192 3.364964 GGCCAACAACTAGACGAAATGTG 60.365 47.826 0.00 0.00 0.00 3.21
192 193 2.812011 GGCCAACAACTAGACGAAATGT 59.188 45.455 0.00 0.00 0.00 2.71
193 194 3.074412 AGGCCAACAACTAGACGAAATG 58.926 45.455 5.01 0.00 0.00 2.32
194 195 3.418684 AGGCCAACAACTAGACGAAAT 57.581 42.857 5.01 0.00 0.00 2.17
195 196 2.922740 AGGCCAACAACTAGACGAAA 57.077 45.000 5.01 0.00 0.00 3.46
196 197 2.895404 AGTAGGCCAACAACTAGACGAA 59.105 45.455 5.01 0.00 0.00 3.85
197 198 2.522185 AGTAGGCCAACAACTAGACGA 58.478 47.619 5.01 0.00 0.00 4.20
198 199 4.360563 CATAGTAGGCCAACAACTAGACG 58.639 47.826 5.01 0.00 0.00 4.18
199 200 4.120589 GCATAGTAGGCCAACAACTAGAC 58.879 47.826 5.01 0.33 0.00 2.59
200 201 3.772572 TGCATAGTAGGCCAACAACTAGA 59.227 43.478 5.01 0.00 0.00 2.43
201 202 3.871594 GTGCATAGTAGGCCAACAACTAG 59.128 47.826 5.01 3.27 0.00 2.57
202 203 3.517901 AGTGCATAGTAGGCCAACAACTA 59.482 43.478 5.01 7.63 0.00 2.24
203 204 2.305927 AGTGCATAGTAGGCCAACAACT 59.694 45.455 5.01 5.36 0.00 3.16
204 205 2.420022 CAGTGCATAGTAGGCCAACAAC 59.580 50.000 5.01 0.00 0.00 3.32
205 206 2.710377 CAGTGCATAGTAGGCCAACAA 58.290 47.619 5.01 0.00 0.00 2.83
206 207 1.678728 GCAGTGCATAGTAGGCCAACA 60.679 52.381 11.09 0.00 0.00 3.33
207 208 1.017387 GCAGTGCATAGTAGGCCAAC 58.983 55.000 11.09 0.00 0.00 3.77
208 209 0.617935 TGCAGTGCATAGTAGGCCAA 59.382 50.000 15.37 0.00 31.71 4.52
209 210 0.178767 CTGCAGTGCATAGTAGGCCA 59.821 55.000 20.10 0.00 38.13 5.36
210 211 1.162800 GCTGCAGTGCATAGTAGGCC 61.163 60.000 20.10 0.00 38.13 5.19
211 212 0.179062 AGCTGCAGTGCATAGTAGGC 60.179 55.000 20.10 17.08 38.13 3.93
212 213 2.363680 ACTAGCTGCAGTGCATAGTAGG 59.636 50.000 23.64 11.57 38.13 3.18
213 214 3.724508 ACTAGCTGCAGTGCATAGTAG 57.275 47.619 23.64 21.42 38.13 2.57
214 215 3.430790 CCAACTAGCTGCAGTGCATAGTA 60.431 47.826 24.65 13.89 38.13 1.82
215 216 2.625737 CAACTAGCTGCAGTGCATAGT 58.374 47.619 20.10 20.48 38.13 2.12
216 217 1.938577 CCAACTAGCTGCAGTGCATAG 59.061 52.381 20.10 19.81 38.13 2.23
217 218 2.013563 GCCAACTAGCTGCAGTGCATA 61.014 52.381 20.10 8.31 38.13 3.14
218 219 1.310933 GCCAACTAGCTGCAGTGCAT 61.311 55.000 20.10 7.44 38.13 3.96
219 220 1.968017 GCCAACTAGCTGCAGTGCA 60.968 57.895 18.58 18.58 36.92 4.57
220 221 2.873288 GCCAACTAGCTGCAGTGC 59.127 61.111 16.64 8.58 0.00 4.40
221 222 1.669115 ACGCCAACTAGCTGCAGTG 60.669 57.895 16.64 4.85 0.00 3.66
222 223 1.669115 CACGCCAACTAGCTGCAGT 60.669 57.895 16.64 4.79 0.00 4.40
223 224 3.031964 GCACGCCAACTAGCTGCAG 62.032 63.158 10.11 10.11 37.08 4.41
224 225 3.049674 GCACGCCAACTAGCTGCA 61.050 61.111 1.02 0.00 37.08 4.41
225 226 4.152625 CGCACGCCAACTAGCTGC 62.153 66.667 0.00 0.00 35.15 5.25
226 227 2.227968 GAACGCACGCCAACTAGCTG 62.228 60.000 0.00 0.00 0.00 4.24
227 228 2.027625 GAACGCACGCCAACTAGCT 61.028 57.895 0.00 0.00 0.00 3.32
228 229 2.474712 GAACGCACGCCAACTAGC 59.525 61.111 0.00 0.00 0.00 3.42
229 230 1.279527 TTCGAACGCACGCCAACTAG 61.280 55.000 0.00 0.00 0.00 2.57
230 231 0.668096 ATTCGAACGCACGCCAACTA 60.668 50.000 0.00 0.00 0.00 2.24
231 232 1.897398 GATTCGAACGCACGCCAACT 61.897 55.000 0.00 0.00 0.00 3.16
232 233 1.509162 GATTCGAACGCACGCCAAC 60.509 57.895 0.00 0.00 0.00 3.77
233 234 2.673114 GGATTCGAACGCACGCCAA 61.673 57.895 0.00 0.00 0.00 4.52
234 235 3.115892 GGATTCGAACGCACGCCA 61.116 61.111 0.00 0.00 0.00 5.69
235 236 2.799540 GAGGATTCGAACGCACGCC 61.800 63.158 0.00 0.00 0.00 5.68
236 237 2.695646 GAGGATTCGAACGCACGC 59.304 61.111 0.00 0.00 0.00 5.34
237 238 2.165301 GGGAGGATTCGAACGCACG 61.165 63.158 0.00 0.00 0.00 5.34
238 239 0.672401 TTGGGAGGATTCGAACGCAC 60.672 55.000 0.00 0.00 0.00 5.34
239 240 0.035598 TTTGGGAGGATTCGAACGCA 59.964 50.000 0.00 0.00 0.00 5.24
240 241 1.130561 CTTTTGGGAGGATTCGAACGC 59.869 52.381 0.00 0.00 0.00 4.84
241 242 1.130561 GCTTTTGGGAGGATTCGAACG 59.869 52.381 0.00 0.00 0.00 3.95
242 243 1.130561 CGCTTTTGGGAGGATTCGAAC 59.869 52.381 0.00 0.00 33.84 3.95
243 244 1.002659 TCGCTTTTGGGAGGATTCGAA 59.997 47.619 0.00 0.00 36.42 3.71
244 245 0.611200 TCGCTTTTGGGAGGATTCGA 59.389 50.000 0.00 0.00 36.42 3.71
245 246 1.331756 CATCGCTTTTGGGAGGATTCG 59.668 52.381 0.00 0.00 44.32 3.34
246 247 2.369394 ACATCGCTTTTGGGAGGATTC 58.631 47.619 2.10 0.00 44.32 2.52
247 248 2.514458 ACATCGCTTTTGGGAGGATT 57.486 45.000 2.10 0.00 44.32 3.01
248 249 2.514458 AACATCGCTTTTGGGAGGAT 57.486 45.000 2.10 0.00 44.32 3.24
249 250 2.159382 GAAACATCGCTTTTGGGAGGA 58.841 47.619 2.10 0.00 44.32 3.71
250 251 1.135689 CGAAACATCGCTTTTGGGAGG 60.136 52.381 0.00 0.00 46.43 4.30
251 252 1.135689 CCGAAACATCGCTTTTGGGAG 60.136 52.381 0.00 0.00 44.65 4.30
252 253 0.878416 CCGAAACATCGCTTTTGGGA 59.122 50.000 0.00 0.00 45.51 4.37
253 254 0.109319 CCCGAAACATCGCTTTTGGG 60.109 55.000 7.00 7.00 44.97 4.12
254 255 0.109319 CCCCGAAACATCGCTTTTGG 60.109 55.000 0.00 0.00 35.21 3.28
255 256 0.596082 ACCCCGAAACATCGCTTTTG 59.404 50.000 0.00 0.00 0.00 2.44
256 257 0.596082 CACCCCGAAACATCGCTTTT 59.404 50.000 0.00 0.00 0.00 2.27
257 258 1.241315 CCACCCCGAAACATCGCTTT 61.241 55.000 0.00 0.00 0.00 3.51
258 259 1.674322 CCACCCCGAAACATCGCTT 60.674 57.895 0.00 0.00 0.00 4.68
259 260 1.910580 ATCCACCCCGAAACATCGCT 61.911 55.000 0.00 0.00 0.00 4.93
260 261 1.029947 AATCCACCCCGAAACATCGC 61.030 55.000 0.00 0.00 0.00 4.58
261 262 1.459450 AAATCCACCCCGAAACATCG 58.541 50.000 0.00 0.00 0.00 3.84
262 263 3.953712 AAAAATCCACCCCGAAACATC 57.046 42.857 0.00 0.00 0.00 3.06
305 306 0.106708 ATGAACACGCAGGACACTGT 59.893 50.000 0.00 0.00 46.62 3.55
307 308 0.603707 CCATGAACACGCAGGACACT 60.604 55.000 0.00 0.00 0.00 3.55
308 309 1.577328 CCCATGAACACGCAGGACAC 61.577 60.000 0.00 0.00 0.00 3.67
309 310 1.302431 CCCATGAACACGCAGGACA 60.302 57.895 0.00 0.00 0.00 4.02
310 311 2.690778 GCCCATGAACACGCAGGAC 61.691 63.158 0.00 0.00 0.00 3.85
311 312 2.359850 GCCCATGAACACGCAGGA 60.360 61.111 0.00 0.00 0.00 3.86
312 313 3.443045 GGCCCATGAACACGCAGG 61.443 66.667 0.00 0.00 0.00 4.85
313 314 3.803082 CGGCCCATGAACACGCAG 61.803 66.667 0.00 0.00 0.00 5.18
335 336 1.301716 CCCACTGCAGCACGTTAGT 60.302 57.895 15.27 0.00 0.00 2.24
336 337 2.680913 GCCCACTGCAGCACGTTAG 61.681 63.158 15.27 0.00 40.77 2.34
337 338 2.668212 GCCCACTGCAGCACGTTA 60.668 61.111 15.27 0.00 40.77 3.18
345 346 4.349503 ATTCAGGCGCCCACTGCA 62.350 61.111 26.15 5.77 41.33 4.41
346 347 3.512516 GATTCAGGCGCCCACTGC 61.513 66.667 26.15 6.64 35.94 4.40
347 348 2.825836 GGATTCAGGCGCCCACTG 60.826 66.667 26.15 16.11 37.30 3.66
348 349 3.329889 TGGATTCAGGCGCCCACT 61.330 61.111 26.15 5.27 0.00 4.00
349 350 3.134127 GTGGATTCAGGCGCCCAC 61.134 66.667 26.15 19.12 41.72 4.61
350 351 4.424711 GGTGGATTCAGGCGCCCA 62.425 66.667 26.15 10.21 0.00 5.36
351 352 4.424711 TGGTGGATTCAGGCGCCC 62.425 66.667 26.15 7.01 0.00 6.13
352 353 2.825836 CTGGTGGATTCAGGCGCC 60.826 66.667 21.89 21.89 0.00 6.53
353 354 2.825836 CCTGGTGGATTCAGGCGC 60.826 66.667 0.00 0.00 44.29 6.53
357 358 1.075374 TGGTTTCCCTGGTGGATTCAG 59.925 52.381 0.00 0.00 44.66 3.02
358 359 1.153539 TGGTTTCCCTGGTGGATTCA 58.846 50.000 0.00 0.00 44.66 2.57
359 360 2.302587 TTGGTTTCCCTGGTGGATTC 57.697 50.000 0.00 0.00 44.66 2.52
360 361 2.178984 TCTTTGGTTTCCCTGGTGGATT 59.821 45.455 0.00 0.00 44.66 3.01
361 362 1.786441 TCTTTGGTTTCCCTGGTGGAT 59.214 47.619 0.00 0.00 44.66 3.41
362 363 1.227249 TCTTTGGTTTCCCTGGTGGA 58.773 50.000 0.00 0.00 43.18 4.02
363 364 1.963515 CTTCTTTGGTTTCCCTGGTGG 59.036 52.381 0.00 0.00 0.00 4.61
364 365 2.887152 CTCTTCTTTGGTTTCCCTGGTG 59.113 50.000 0.00 0.00 0.00 4.17
365 366 2.753168 GCTCTTCTTTGGTTTCCCTGGT 60.753 50.000 0.00 0.00 0.00 4.00
366 367 1.889170 GCTCTTCTTTGGTTTCCCTGG 59.111 52.381 0.00 0.00 0.00 4.45
367 368 2.868899 AGCTCTTCTTTGGTTTCCCTG 58.131 47.619 0.00 0.00 0.00 4.45
368 369 3.653352 ACTAGCTCTTCTTTGGTTTCCCT 59.347 43.478 0.00 0.00 0.00 4.20
369 370 4.022413 ACTAGCTCTTCTTTGGTTTCCC 57.978 45.455 0.00 0.00 0.00 3.97
370 371 5.278512 CCAAACTAGCTCTTCTTTGGTTTCC 60.279 44.000 10.64 0.00 38.47 3.13
371 372 5.531287 TCCAAACTAGCTCTTCTTTGGTTTC 59.469 40.000 15.90 0.00 42.24 2.78
372 373 5.445964 TCCAAACTAGCTCTTCTTTGGTTT 58.554 37.500 15.90 1.39 42.24 3.27
373 374 5.048846 TCCAAACTAGCTCTTCTTTGGTT 57.951 39.130 15.90 0.00 42.24 3.67
374 375 4.706842 TCCAAACTAGCTCTTCTTTGGT 57.293 40.909 15.90 0.00 42.24 3.67
375 376 5.248640 TCATCCAAACTAGCTCTTCTTTGG 58.751 41.667 12.05 12.05 42.75 3.28
376 377 5.163774 GCTCATCCAAACTAGCTCTTCTTTG 60.164 44.000 0.00 0.00 32.18 2.77
377 378 4.940654 GCTCATCCAAACTAGCTCTTCTTT 59.059 41.667 0.00 0.00 32.18 2.52
378 379 4.224818 AGCTCATCCAAACTAGCTCTTCTT 59.775 41.667 0.00 0.00 41.35 2.52
379 380 3.774216 AGCTCATCCAAACTAGCTCTTCT 59.226 43.478 0.00 0.00 41.35 2.85
380 381 3.870419 CAGCTCATCCAAACTAGCTCTTC 59.130 47.826 0.00 0.00 43.26 2.87
381 382 3.517100 TCAGCTCATCCAAACTAGCTCTT 59.483 43.478 0.00 0.00 43.26 2.85
382 383 3.102972 TCAGCTCATCCAAACTAGCTCT 58.897 45.455 0.00 0.00 43.26 4.09
383 384 3.533606 TCAGCTCATCCAAACTAGCTC 57.466 47.619 0.00 0.00 43.26 4.09
384 385 4.500499 AATCAGCTCATCCAAACTAGCT 57.500 40.909 0.00 0.00 45.94 3.32
385 386 4.880696 AGAAATCAGCTCATCCAAACTAGC 59.119 41.667 0.00 0.00 35.16 3.42
386 387 6.998968 AAGAAATCAGCTCATCCAAACTAG 57.001 37.500 0.00 0.00 0.00 2.57
387 388 7.448161 TGAAAAGAAATCAGCTCATCCAAACTA 59.552 33.333 0.00 0.00 0.00 2.24
388 389 6.266103 TGAAAAGAAATCAGCTCATCCAAACT 59.734 34.615 0.00 0.00 0.00 2.66
389 390 6.364435 GTGAAAAGAAATCAGCTCATCCAAAC 59.636 38.462 0.00 0.00 0.00 2.93
390 391 6.266103 AGTGAAAAGAAATCAGCTCATCCAAA 59.734 34.615 0.00 0.00 0.00 3.28
391 392 5.771666 AGTGAAAAGAAATCAGCTCATCCAA 59.228 36.000 0.00 0.00 0.00 3.53
392 393 5.319453 AGTGAAAAGAAATCAGCTCATCCA 58.681 37.500 0.00 0.00 0.00 3.41
393 394 5.163673 GGAGTGAAAAGAAATCAGCTCATCC 60.164 44.000 0.00 0.00 31.94 3.51
394 395 5.647225 AGGAGTGAAAAGAAATCAGCTCATC 59.353 40.000 0.00 0.00 31.94 2.92
395 396 5.415077 CAGGAGTGAAAAGAAATCAGCTCAT 59.585 40.000 0.00 0.00 31.94 2.90
396 397 4.758674 CAGGAGTGAAAAGAAATCAGCTCA 59.241 41.667 0.00 0.00 31.94 4.26
397 398 4.759183 ACAGGAGTGAAAAGAAATCAGCTC 59.241 41.667 0.00 0.00 0.00 4.09
398 399 4.723309 ACAGGAGTGAAAAGAAATCAGCT 58.277 39.130 0.00 0.00 0.00 4.24
399 400 5.444663 AACAGGAGTGAAAAGAAATCAGC 57.555 39.130 0.00 0.00 0.00 4.26
400 401 7.012704 TCTGAAACAGGAGTGAAAAGAAATCAG 59.987 37.037 0.00 0.00 31.51 2.90
401 402 6.828273 TCTGAAACAGGAGTGAAAAGAAATCA 59.172 34.615 0.00 0.00 31.51 2.57
402 403 7.227512 TCTCTGAAACAGGAGTGAAAAGAAATC 59.772 37.037 0.00 0.00 31.51 2.17
403 404 7.056635 TCTCTGAAACAGGAGTGAAAAGAAAT 58.943 34.615 0.00 0.00 31.51 2.17
404 405 6.414732 TCTCTGAAACAGGAGTGAAAAGAAA 58.585 36.000 0.00 0.00 31.51 2.52
405 406 5.989477 TCTCTGAAACAGGAGTGAAAAGAA 58.011 37.500 0.00 0.00 31.51 2.52
406 407 5.614324 TCTCTGAAACAGGAGTGAAAAGA 57.386 39.130 0.00 0.00 31.51 2.52
407 408 6.931281 TGTATCTCTGAAACAGGAGTGAAAAG 59.069 38.462 0.00 0.00 31.51 2.27
408 409 6.826668 TGTATCTCTGAAACAGGAGTGAAAA 58.173 36.000 0.00 0.00 31.51 2.29
409 410 6.419484 TGTATCTCTGAAACAGGAGTGAAA 57.581 37.500 0.00 0.00 31.51 2.69
410 411 6.419484 TTGTATCTCTGAAACAGGAGTGAA 57.581 37.500 0.00 0.00 31.51 3.18
411 412 6.419484 TTTGTATCTCTGAAACAGGAGTGA 57.581 37.500 0.00 0.00 31.51 3.41
412 413 6.483307 TGTTTTGTATCTCTGAAACAGGAGTG 59.517 38.462 0.00 0.00 37.15 3.51
413 414 6.591935 TGTTTTGTATCTCTGAAACAGGAGT 58.408 36.000 0.00 0.00 37.15 3.85
414 415 7.496529 TTGTTTTGTATCTCTGAAACAGGAG 57.503 36.000 0.00 0.00 41.37 3.69
415 416 7.873719 TTTGTTTTGTATCTCTGAAACAGGA 57.126 32.000 0.00 0.00 41.37 3.86
416 417 8.190784 ACTTTTGTTTTGTATCTCTGAAACAGG 58.809 33.333 0.00 0.00 41.37 4.00
421 422 8.774586 GCTCTACTTTTGTTTTGTATCTCTGAA 58.225 33.333 0.00 0.00 0.00 3.02
422 423 8.150945 AGCTCTACTTTTGTTTTGTATCTCTGA 58.849 33.333 0.00 0.00 0.00 3.27
423 424 8.316640 AGCTCTACTTTTGTTTTGTATCTCTG 57.683 34.615 0.00 0.00 0.00 3.35
424 425 7.604545 GGAGCTCTACTTTTGTTTTGTATCTCT 59.395 37.037 14.64 0.00 0.00 3.10
425 426 7.148390 GGGAGCTCTACTTTTGTTTTGTATCTC 60.148 40.741 14.64 0.00 0.00 2.75
426 427 6.655425 GGGAGCTCTACTTTTGTTTTGTATCT 59.345 38.462 14.64 0.00 0.00 1.98
427 428 6.402226 CGGGAGCTCTACTTTTGTTTTGTATC 60.402 42.308 14.64 0.00 0.00 2.24
428 429 5.411669 CGGGAGCTCTACTTTTGTTTTGTAT 59.588 40.000 14.64 0.00 0.00 2.29
429 430 4.753107 CGGGAGCTCTACTTTTGTTTTGTA 59.247 41.667 14.64 0.00 0.00 2.41
430 431 3.564225 CGGGAGCTCTACTTTTGTTTTGT 59.436 43.478 14.64 0.00 0.00 2.83
431 432 4.147219 CGGGAGCTCTACTTTTGTTTTG 57.853 45.455 14.64 0.00 0.00 2.44
452 453 3.519930 GTCCTCCCTCTCGTCCGC 61.520 72.222 0.00 0.00 0.00 5.54
453 454 2.115911 CAGTCCTCCCTCTCGTCCG 61.116 68.421 0.00 0.00 0.00 4.79
454 455 0.106419 ATCAGTCCTCCCTCTCGTCC 60.106 60.000 0.00 0.00 0.00 4.79
455 456 1.314730 GATCAGTCCTCCCTCTCGTC 58.685 60.000 0.00 0.00 0.00 4.20
456 457 0.106419 GGATCAGTCCTCCCTCTCGT 60.106 60.000 0.00 0.00 41.60 4.18
457 458 0.106469 TGGATCAGTCCTCCCTCTCG 60.106 60.000 0.00 0.00 45.32 4.04
458 459 2.166907 TTGGATCAGTCCTCCCTCTC 57.833 55.000 0.00 0.00 45.32 3.20
459 460 2.649742 TTTGGATCAGTCCTCCCTCT 57.350 50.000 0.00 0.00 45.32 3.69
460 461 3.941704 AATTTGGATCAGTCCTCCCTC 57.058 47.619 0.00 0.00 45.32 4.30
461 462 4.079730 GGTAAATTTGGATCAGTCCTCCCT 60.080 45.833 0.00 0.00 45.32 4.20
462 463 4.079730 AGGTAAATTTGGATCAGTCCTCCC 60.080 45.833 0.00 0.00 45.32 4.30
463 464 5.117406 AGGTAAATTTGGATCAGTCCTCC 57.883 43.478 0.00 0.00 45.32 4.30
464 465 7.468141 AAAAGGTAAATTTGGATCAGTCCTC 57.532 36.000 0.00 0.00 45.32 3.71
465 466 7.855784 AAAAAGGTAAATTTGGATCAGTCCT 57.144 32.000 0.00 0.00 45.32 3.85
489 490 6.007703 AGGTGAATTTGGATCCGACTAAAAA 58.992 36.000 7.39 0.95 0.00 1.94
490 491 5.566469 AGGTGAATTTGGATCCGACTAAAA 58.434 37.500 7.39 1.73 0.00 1.52
491 492 5.174037 AGGTGAATTTGGATCCGACTAAA 57.826 39.130 7.39 2.13 0.00 1.85
492 493 4.837093 AGGTGAATTTGGATCCGACTAA 57.163 40.909 7.39 0.00 0.00 2.24
493 494 4.202223 GCTAGGTGAATTTGGATCCGACTA 60.202 45.833 7.39 1.16 0.00 2.59
494 495 3.432326 GCTAGGTGAATTTGGATCCGACT 60.432 47.826 7.39 0.00 0.00 4.18
495 496 2.872858 GCTAGGTGAATTTGGATCCGAC 59.127 50.000 7.39 0.00 0.00 4.79
496 497 2.158813 GGCTAGGTGAATTTGGATCCGA 60.159 50.000 7.39 1.27 0.00 4.55
497 498 2.222027 GGCTAGGTGAATTTGGATCCG 58.778 52.381 7.39 0.00 0.00 4.18
498 499 3.217626 CTGGCTAGGTGAATTTGGATCC 58.782 50.000 4.20 4.20 0.00 3.36
499 500 3.879892 GACTGGCTAGGTGAATTTGGATC 59.120 47.826 0.85 0.00 0.00 3.36
500 501 3.372025 GGACTGGCTAGGTGAATTTGGAT 60.372 47.826 0.85 0.00 0.00 3.41
501 502 2.026262 GGACTGGCTAGGTGAATTTGGA 60.026 50.000 0.85 0.00 0.00 3.53
502 503 2.369394 GGACTGGCTAGGTGAATTTGG 58.631 52.381 0.85 0.00 0.00 3.28
503 504 2.290896 TGGGACTGGCTAGGTGAATTTG 60.291 50.000 0.85 0.00 0.00 2.32
504 505 1.992557 TGGGACTGGCTAGGTGAATTT 59.007 47.619 0.85 0.00 0.00 1.82
505 506 1.668826 TGGGACTGGCTAGGTGAATT 58.331 50.000 0.85 0.00 0.00 2.17
506 507 1.668826 TTGGGACTGGCTAGGTGAAT 58.331 50.000 0.85 0.00 0.00 2.57
507 508 1.440618 TTTGGGACTGGCTAGGTGAA 58.559 50.000 0.85 0.00 0.00 3.18
508 509 1.351017 CTTTTGGGACTGGCTAGGTGA 59.649 52.381 0.85 0.00 0.00 4.02
647 648 0.820871 CTGTAGAGAGGCTGGGTGTC 59.179 60.000 0.00 0.00 0.00 3.67
742 744 2.116366 GTGTGCATGTGGTTTTCGTTC 58.884 47.619 0.00 0.00 0.00 3.95
759 761 1.565156 CTGTGGTTATGCGCGTGTGT 61.565 55.000 13.61 0.00 0.00 3.72
882 888 1.003812 TGTAAAGTGGTCATTCCCCGG 59.996 52.381 0.00 0.00 34.77 5.73
937 943 1.205064 CTTGTTTCTGCTGCGACCG 59.795 57.895 0.00 0.00 0.00 4.79
966 972 7.145932 ACGGTTCTTGATTTTCTTTATCTGG 57.854 36.000 0.00 0.00 0.00 3.86
1107 1113 1.000163 CTCCCGGAATCGACGATGATT 60.000 52.381 11.83 6.60 41.16 2.57
1111 1117 0.539901 ATCCTCCCGGAATCGACGAT 60.540 55.000 0.73 4.05 44.02 3.73
1130 1136 2.041265 GAAGAGGGGAGGGAGGCA 59.959 66.667 0.00 0.00 0.00 4.75
1211 1217 6.421377 CACTTTTGTGCTACTATGCATGTA 57.579 37.500 10.16 8.91 45.23 2.29
1298 1318 1.678627 CTTCTCCTCGTCGACATCCAT 59.321 52.381 17.16 0.00 0.00 3.41
1479 1499 4.767255 CAGGCCCTCAGCGTCACC 62.767 72.222 0.00 0.00 45.17 4.02
1480 1500 3.655810 CTCAGGCCCTCAGCGTCAC 62.656 68.421 0.00 0.00 45.17 3.67
1481 1501 3.385384 CTCAGGCCCTCAGCGTCA 61.385 66.667 0.00 0.00 45.17 4.35
1539 1559 2.125147 CCACACGTCCGCCATGAT 60.125 61.111 0.00 0.00 0.00 2.45
1879 1899 8.509690 CAGTTGATTAATTTGTGTCAGTCTGAT 58.490 33.333 5.68 0.00 31.99 2.90
1880 1900 7.041167 CCAGTTGATTAATTTGTGTCAGTCTGA 60.041 37.037 0.00 0.00 31.99 3.27
1881 1901 7.080099 CCAGTTGATTAATTTGTGTCAGTCTG 58.920 38.462 0.00 0.00 0.00 3.51
1883 1903 6.970484 ACCAGTTGATTAATTTGTGTCAGTC 58.030 36.000 0.00 0.00 0.00 3.51
1884 1904 6.959639 ACCAGTTGATTAATTTGTGTCAGT 57.040 33.333 0.00 0.00 0.00 3.41
1887 2253 9.180678 CAAGTAACCAGTTGATTAATTTGTGTC 57.819 33.333 0.00 0.00 37.28 3.67
1904 2270 1.577468 CGCTCACACACAAGTAACCA 58.423 50.000 0.00 0.00 0.00 3.67
1915 2281 1.154150 GGAATTGCAGCGCTCACAC 60.154 57.895 7.13 0.00 0.00 3.82
2134 2881 6.435904 AGAGTGCTAGAGTAGTTCTCATGTTT 59.564 38.462 0.00 0.00 44.98 2.83
2136 2883 5.356751 CAGAGTGCTAGAGTAGTTCTCATGT 59.643 44.000 0.00 0.00 44.98 3.21
2137 2884 5.356751 ACAGAGTGCTAGAGTAGTTCTCATG 59.643 44.000 0.00 0.00 44.98 3.07
2138 2885 5.505780 ACAGAGTGCTAGAGTAGTTCTCAT 58.494 41.667 0.00 0.00 44.98 2.90
2139 2886 4.912586 ACAGAGTGCTAGAGTAGTTCTCA 58.087 43.478 0.00 0.00 44.98 3.27
2154 2901 1.069513 TGGACCAACCGTAACAGAGTG 59.930 52.381 0.00 0.00 42.61 3.51
2162 2909 1.134037 AGCAAACTTGGACCAACCGTA 60.134 47.619 1.69 0.00 42.61 4.02
2172 2919 4.262036 GGAACCCTCTTTTAGCAAACTTGG 60.262 45.833 0.00 0.00 0.00 3.61
2179 2926 1.423541 TGCAGGAACCCTCTTTTAGCA 59.576 47.619 0.00 0.00 0.00 3.49
2180 2927 2.087646 CTGCAGGAACCCTCTTTTAGC 58.912 52.381 5.57 0.00 0.00 3.09
2181 2928 3.077359 CACTGCAGGAACCCTCTTTTAG 58.923 50.000 19.93 0.00 0.00 1.85
2187 2934 0.391793 GTAGCACTGCAGGAACCCTC 60.392 60.000 19.93 0.00 0.00 4.30
2190 2942 1.014564 GTCGTAGCACTGCAGGAACC 61.015 60.000 19.93 2.84 0.00 3.62
2275 3027 2.755064 TATTCCCCGGCGTCGTCA 60.755 61.111 9.28 0.00 33.95 4.35
2377 3129 2.093500 CAGCTTGCTGGAGTACCATGTA 60.093 50.000 14.25 0.00 45.87 2.29
2404 3156 1.226974 CAGTATCCTGTCGCCGTGG 60.227 63.158 0.00 0.00 33.80 4.94
2502 3254 6.018588 TCGTCGTTTCTTCAGCATTTTCTTTA 60.019 34.615 0.00 0.00 0.00 1.85
2510 3286 1.071605 GCTCGTCGTTTCTTCAGCAT 58.928 50.000 0.00 0.00 0.00 3.79
2945 3722 0.891904 TTTGAAGGCCCGGTACTTGC 60.892 55.000 12.07 1.77 0.00 4.01
3003 3780 1.234821 CAGCCCAAGACGCTAAAACA 58.765 50.000 0.00 0.00 33.91 2.83
3042 3826 0.111061 TGAAACAGAGCCCAGTGCAT 59.889 50.000 0.00 0.00 44.83 3.96
3046 3830 1.366319 ATCCTGAAACAGAGCCCAGT 58.634 50.000 0.00 0.00 32.44 4.00
3054 3838 2.416547 CGGCACAGTAATCCTGAAACAG 59.583 50.000 0.00 0.00 44.49 3.16
3223 4031 0.741221 GAACACCCTGTCGATGAGCC 60.741 60.000 0.00 0.00 0.00 4.70
3263 4071 1.877637 AAAAGCGGCATTTTCAACCC 58.122 45.000 1.45 0.00 0.00 4.11
3420 4230 9.289303 CCCACGAATGAATTACTATTCTTTTTG 57.711 33.333 0.00 0.00 40.68 2.44
3430 4240 9.924650 GTATTAGTATCCCACGAATGAATTACT 57.075 33.333 0.00 0.00 34.68 2.24
3431 4241 9.701098 TGTATTAGTATCCCACGAATGAATTAC 57.299 33.333 0.00 0.00 34.68 1.89
3552 4743 3.542712 TCGCATTTTGTTGCTCTTCTC 57.457 42.857 0.00 0.00 40.54 2.87
3557 4748 5.219841 CGTAAAGAATCGCATTTTGTTGCTC 60.220 40.000 0.00 0.00 40.54 4.26
3643 4844 1.072678 CTGATCGAGGGGCATGCAT 59.927 57.895 21.36 4.27 0.00 3.96
3671 4872 4.965158 GTCAGACTTTACGATCGACTGATC 59.035 45.833 24.34 13.04 46.24 2.92
3768 4974 4.675114 ACGTGCTTTTCAACGAATCATTTC 59.325 37.500 1.80 0.00 0.00 2.17
3777 4983 1.462791 GGTTCACGTGCTTTTCAACG 58.537 50.000 11.67 0.00 0.00 4.10
3779 4985 0.378962 CGGGTTCACGTGCTTTTCAA 59.621 50.000 11.67 0.00 0.00 2.69
3830 5036 2.979676 TCGGCGTCACACGGTACT 60.980 61.111 6.85 0.00 42.82 2.73
3837 5043 4.429212 CCATCGGTCGGCGTCACA 62.429 66.667 6.85 0.00 0.00 3.58
4017 5268 1.146263 CGATCAGCAACCTACCCCC 59.854 63.158 0.00 0.00 0.00 5.40
4018 5269 0.759346 ATCGATCAGCAACCTACCCC 59.241 55.000 0.00 0.00 0.00 4.95
4019 5270 1.603172 CGATCGATCAGCAACCTACCC 60.603 57.143 24.40 0.00 0.00 3.69
4020 5271 1.603172 CCGATCGATCAGCAACCTACC 60.603 57.143 24.40 0.00 0.00 3.18
4102 5358 1.826096 TGGAATCCGTAACGTGGATCA 59.174 47.619 6.38 0.00 45.46 2.92
4198 5458 4.201724 ACTGCAAACGAGAGAAATTATCGC 60.202 41.667 0.00 0.00 44.08 4.58
4199 5459 5.456192 ACTGCAAACGAGAGAAATTATCG 57.544 39.130 0.00 0.00 45.65 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.