Multiple sequence alignment - TraesCS2D01G220700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G220700 chr2D 100.000 3454 0 0 2933 6386 188428690 188432143 0.000000e+00 6379.0
1 TraesCS2D01G220700 chr2D 100.000 1737 0 0 1 1737 188425758 188427494 0.000000e+00 3208.0
2 TraesCS2D01G220700 chr2D 100.000 721 0 0 1958 2678 188427715 188428435 0.000000e+00 1332.0
3 TraesCS2D01G220700 chr2D 95.515 379 10 6 70 444 98265592 98265967 3.290000e-167 599.0
4 TraesCS2D01G220700 chr2D 95.515 379 9 6 70 443 427534265 427533890 3.290000e-167 599.0
5 TraesCS2D01G220700 chr2D 98.387 62 1 0 1 62 176560809 176560870 6.770000e-20 110.0
6 TraesCS2D01G220700 chr2D 98.387 62 1 0 1 62 279048991 279048930 6.770000e-20 110.0
7 TraesCS2D01G220700 chr2D 98.000 50 1 0 6325 6374 645844014 645843965 3.170000e-13 87.9
8 TraesCS2D01G220700 chr2D 91.803 61 5 0 1996 2056 83962469 83962529 1.140000e-12 86.1
9 TraesCS2D01G220700 chr2B 94.444 3276 140 15 3073 6327 244531776 244535030 0.000000e+00 5003.0
10 TraesCS2D01G220700 chr2B 92.867 715 33 6 1978 2678 244530695 244531405 0.000000e+00 1022.0
11 TraesCS2D01G220700 chr2B 94.118 663 22 3 975 1634 244529932 244530580 0.000000e+00 992.0
12 TraesCS2D01G220700 chr2B 95.385 65 3 0 1673 1737 244530580 244530644 3.150000e-18 104.0
13 TraesCS2D01G220700 chr2A 94.410 1789 65 8 2935 4705 202037869 202039640 0.000000e+00 2717.0
14 TraesCS2D01G220700 chr2A 98.295 1173 18 2 4694 5865 202040270 202041441 0.000000e+00 2054.0
15 TraesCS2D01G220700 chr2A 92.146 713 41 4 1978 2678 202037081 202037790 0.000000e+00 992.0
16 TraesCS2D01G220700 chr2A 95.387 542 14 3 967 1497 202036058 202036599 0.000000e+00 852.0
17 TraesCS2D01G220700 chr2A 98.498 466 5 2 5862 6326 202041544 202042008 0.000000e+00 821.0
18 TraesCS2D01G220700 chr2A 83.333 102 12 4 1981 2081 55565778 55565681 8.820000e-14 89.8
19 TraesCS2D01G220700 chr6A 88.676 521 53 5 447 964 451602195 451601678 1.170000e-176 630.0
20 TraesCS2D01G220700 chr6A 96.667 60 2 0 1 60 103959972 103959913 4.070000e-17 100.0
21 TraesCS2D01G220700 chr6A 86.420 81 7 3 2004 2083 448702220 448702143 1.140000e-12 86.1
22 TraesCS2D01G220700 chrUn 88.845 511 54 2 445 953 332622133 332622642 5.440000e-175 625.0
23 TraesCS2D01G220700 chr4B 88.845 511 54 2 445 953 618630265 618630774 5.440000e-175 625.0
24 TraesCS2D01G220700 chr4B 88.845 511 54 2 445 953 618637038 618637547 5.440000e-175 625.0
25 TraesCS2D01G220700 chr5D 95.538 381 9 7 70 444 478730055 478730433 2.550000e-168 603.0
26 TraesCS2D01G220700 chr5D 96.296 54 2 0 6321 6374 195655132 195655185 8.820000e-14 89.8
27 TraesCS2D01G220700 chr5D 98.039 51 1 0 6324 6374 345493465 345493415 8.820000e-14 89.8
28 TraesCS2D01G220700 chr7D 95.263 380 10 6 70 446 109792334 109792708 4.260000e-166 595.0
29 TraesCS2D01G220700 chr7D 95.225 377 12 6 70 443 25071443 25071816 5.510000e-165 592.0
30 TraesCS2D01G220700 chr7D 94.517 383 11 7 70 444 13078327 13077947 3.320000e-162 582.0
31 TraesCS2D01G220700 chr7D 96.774 62 2 0 1 62 581090840 581090901 3.150000e-18 104.0
32 TraesCS2D01G220700 chr4D 95.479 376 9 6 70 444 440446732 440446364 1.530000e-165 593.0
33 TraesCS2D01G220700 chr4D 86.667 75 3 7 2003 2077 427029635 427029568 6.870000e-10 76.8
34 TraesCS2D01G220700 chr1B 87.214 524 62 4 441 962 379627417 379627937 5.510000e-165 592.0
35 TraesCS2D01G220700 chr1B 96.774 62 2 0 1 62 449582766 449582827 3.150000e-18 104.0
36 TraesCS2D01G220700 chr1B 98.113 53 1 0 6322 6374 427602940 427602992 6.820000e-15 93.5
37 TraesCS2D01G220700 chr6D 95.000 380 11 6 70 443 452310417 452310040 1.980000e-164 590.0
38 TraesCS2D01G220700 chr6D 96.296 54 1 1 6322 6374 333575303 333575250 3.170000e-13 87.9
39 TraesCS2D01G220700 chr5B 87.671 511 58 4 445 953 527288942 527288435 1.980000e-164 590.0
40 TraesCS2D01G220700 chr5B 88.158 76 7 2 2004 2078 355601153 355601227 8.820000e-14 89.8
41 TraesCS2D01G220700 chr5B 96.296 54 1 1 6322 6374 135544497 135544444 3.170000e-13 87.9
42 TraesCS2D01G220700 chr5B 92.063 63 4 1 6313 6374 665570183 665570121 3.170000e-13 87.9
43 TraesCS2D01G220700 chr5B 83.000 100 10 6 1982 2078 271145790 271145885 4.100000e-12 84.2
44 TraesCS2D01G220700 chr1D 94.737 380 14 5 70 443 42814717 42814338 2.570000e-163 586.0
45 TraesCS2D01G220700 chr1D 96.774 62 2 0 1 62 472293174 472293113 3.150000e-18 104.0
46 TraesCS2D01G220700 chr7A 87.109 512 63 2 445 954 637613346 637612836 1.540000e-160 577.0
47 TraesCS2D01G220700 chr3A 87.109 512 59 6 445 953 550470723 550471230 2.000000e-159 573.0
48 TraesCS2D01G220700 chr3A 96.774 62 2 0 1 62 550470669 550470730 3.150000e-18 104.0
49 TraesCS2D01G220700 chr4A 86.940 513 62 4 445 954 604587441 604587951 7.180000e-159 571.0
50 TraesCS2D01G220700 chr1A 96.774 62 2 0 1 62 13969833 13969894 3.150000e-18 104.0
51 TraesCS2D01G220700 chr1A 90.000 70 4 3 6308 6374 570277085 570277016 3.170000e-13 87.9
52 TraesCS2D01G220700 chr5A 96.667 60 2 0 1 60 262295391 262295332 4.070000e-17 100.0
53 TraesCS2D01G220700 chr5A 93.443 61 1 3 1998 2056 328936579 328936638 3.170000e-13 87.9
54 TraesCS2D01G220700 chr5A 100.000 31 0 0 2055 2085 452442581 452442551 2.490000e-04 58.4
55 TraesCS2D01G220700 chr6B 98.039 51 1 0 6324 6374 12740002 12739952 8.820000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G220700 chr2D 188425758 188432143 6385 False 3639.666667 6379 100.0000 1 6386 3 chr2D.!!$F4 6385
1 TraesCS2D01G220700 chr2B 244529932 244535030 5098 False 1780.250000 5003 94.2035 975 6327 4 chr2B.!!$F1 5352
2 TraesCS2D01G220700 chr2A 202036058 202042008 5950 False 1487.200000 2717 95.7472 967 6326 5 chr2A.!!$F1 5359
3 TraesCS2D01G220700 chr6A 451601678 451602195 517 True 630.000000 630 88.6760 447 964 1 chr6A.!!$R3 517
4 TraesCS2D01G220700 chrUn 332622133 332622642 509 False 625.000000 625 88.8450 445 953 1 chrUn.!!$F1 508
5 TraesCS2D01G220700 chr4B 618630265 618630774 509 False 625.000000 625 88.8450 445 953 1 chr4B.!!$F1 508
6 TraesCS2D01G220700 chr4B 618637038 618637547 509 False 625.000000 625 88.8450 445 953 1 chr4B.!!$F2 508
7 TraesCS2D01G220700 chr1B 379627417 379627937 520 False 592.000000 592 87.2140 441 962 1 chr1B.!!$F1 521
8 TraesCS2D01G220700 chr5B 527288435 527288942 507 True 590.000000 590 87.6710 445 953 1 chr5B.!!$R2 508
9 TraesCS2D01G220700 chr7A 637612836 637613346 510 True 577.000000 577 87.1090 445 954 1 chr7A.!!$R1 509
10 TraesCS2D01G220700 chr3A 550470669 550471230 561 False 338.500000 573 91.9415 1 953 2 chr3A.!!$F1 952
11 TraesCS2D01G220700 chr4A 604587441 604587951 510 False 571.000000 571 86.9400 445 954 1 chr4A.!!$F1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
431 432 0.036732 ATTTGAGCTCGGGTGCAGAA 59.963 50.0 9.64 0.00 34.99 3.02 F
1063 1068 0.037590 TCTGGCCCAAAATACTGCGT 59.962 50.0 0.00 0.00 0.00 5.24 F
2413 2678 0.030773 GCCTCATCGTCGCTCATGTA 59.969 55.0 0.00 0.00 0.00 2.29 F
2457 2722 0.248825 CTCCTTCTGGTCTGCGATCG 60.249 60.0 11.69 11.69 34.23 3.69 F
2504 2770 0.312416 CTCGTTGATAGGAGGAGGCG 59.688 60.0 0.00 0.00 33.63 5.52 F
4275 4675 0.890996 GTGTCCTTGCTCACCCCTTG 60.891 60.0 0.00 0.00 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1708 1972 0.544357 TCGTCTCACAACCCCCTCAT 60.544 55.000 0.00 0.00 0.00 2.90 R
2521 2787 0.521291 TTCGTTTATGTGCTGCTGCC 59.479 50.000 13.47 5.20 38.71 4.85 R
4300 4700 0.034756 TGGTCCATCTGGTGTGAACG 59.965 55.000 0.00 0.00 36.34 3.95 R
4323 4723 4.582869 TCAACTTCATGGTCATCCTGAAG 58.417 43.478 16.74 16.74 44.61 3.02 R
4540 4940 7.923344 CCAACTAAGAGTTAGTCCACATGATAG 59.077 40.741 0.00 0.00 45.33 2.08 R
5653 6694 0.907486 CTGCCATGACAAGGAGAGGA 59.093 55.000 0.00 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 8.996024 TTCAGAAAGAAAAGAAATTTTTCGGT 57.004 26.923 6.70 0.46 41.78 4.69
56 57 8.996024 TCAGAAAGAAAAGAAATTTTTCGGTT 57.004 26.923 6.70 5.73 41.78 4.44
57 58 8.868916 TCAGAAAGAAAAGAAATTTTTCGGTTG 58.131 29.630 6.70 5.40 41.78 3.77
58 59 8.655970 CAGAAAGAAAAGAAATTTTTCGGTTGT 58.344 29.630 6.70 2.78 41.78 3.32
59 60 8.655970 AGAAAGAAAAGAAATTTTTCGGTTGTG 58.344 29.630 6.70 0.00 41.78 3.33
60 61 8.541133 AAAGAAAAGAAATTTTTCGGTTGTGA 57.459 26.923 6.70 0.00 41.78 3.58
61 62 8.541133 AAGAAAAGAAATTTTTCGGTTGTGAA 57.459 26.923 6.70 0.00 41.78 3.18
62 63 7.959733 AGAAAAGAAATTTTTCGGTTGTGAAC 58.040 30.769 6.70 0.00 41.78 3.18
63 64 5.942325 AAGAAATTTTTCGGTTGTGAACG 57.058 34.783 0.00 0.00 41.92 3.95
64 65 5.238006 AGAAATTTTTCGGTTGTGAACGA 57.762 34.783 0.00 0.00 41.92 3.85
65 66 5.642686 AGAAATTTTTCGGTTGTGAACGAA 58.357 33.333 0.00 0.00 46.05 3.85
79 80 2.601562 ACGAAAGTGCTCGGTGAAC 58.398 52.632 0.00 0.00 46.97 3.18
80 81 0.179094 ACGAAAGTGCTCGGTGAACA 60.179 50.000 0.00 0.00 46.97 3.18
81 82 0.508641 CGAAAGTGCTCGGTGAACAG 59.491 55.000 0.00 0.00 35.14 3.16
82 83 1.583054 GAAAGTGCTCGGTGAACAGT 58.417 50.000 0.00 0.00 0.00 3.55
83 84 2.750948 GAAAGTGCTCGGTGAACAGTA 58.249 47.619 0.00 0.00 0.00 2.74
84 85 2.902705 AAGTGCTCGGTGAACAGTAA 57.097 45.000 0.00 0.00 0.00 2.24
85 86 2.902705 AGTGCTCGGTGAACAGTAAA 57.097 45.000 0.00 0.00 0.00 2.01
86 87 3.188159 AGTGCTCGGTGAACAGTAAAA 57.812 42.857 0.00 0.00 0.00 1.52
87 88 3.740115 AGTGCTCGGTGAACAGTAAAAT 58.260 40.909 0.00 0.00 0.00 1.82
88 89 3.746492 AGTGCTCGGTGAACAGTAAAATC 59.254 43.478 0.00 0.00 0.00 2.17
89 90 2.734606 TGCTCGGTGAACAGTAAAATCG 59.265 45.455 0.00 0.00 0.00 3.34
90 91 2.991190 GCTCGGTGAACAGTAAAATCGA 59.009 45.455 0.00 0.00 0.00 3.59
91 92 3.430895 GCTCGGTGAACAGTAAAATCGAA 59.569 43.478 0.00 0.00 0.00 3.71
92 93 4.084223 GCTCGGTGAACAGTAAAATCGAAA 60.084 41.667 0.00 0.00 0.00 3.46
93 94 5.559417 GCTCGGTGAACAGTAAAATCGAAAA 60.559 40.000 0.00 0.00 0.00 2.29
94 95 6.360844 TCGGTGAACAGTAAAATCGAAAAA 57.639 33.333 0.00 0.00 0.00 1.94
159 160 9.516314 AGAAACATTAACAAAAGTTCTAAGTGC 57.484 29.630 0.00 0.00 0.00 4.40
160 161 8.642908 AAACATTAACAAAAGTTCTAAGTGCC 57.357 30.769 0.00 0.00 0.00 5.01
161 162 7.582667 ACATTAACAAAAGTTCTAAGTGCCT 57.417 32.000 0.00 0.00 0.00 4.75
162 163 7.425606 ACATTAACAAAAGTTCTAAGTGCCTG 58.574 34.615 0.00 0.00 0.00 4.85
163 164 3.990318 ACAAAAGTTCTAAGTGCCTGC 57.010 42.857 0.00 0.00 0.00 4.85
164 165 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
165 166 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
166 167 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
167 168 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
168 169 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
169 170 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
170 171 5.126396 AGTTCTAAGTGCCTGCAAAAATC 57.874 39.130 0.00 0.00 0.00 2.17
171 172 4.584325 AGTTCTAAGTGCCTGCAAAAATCA 59.416 37.500 0.00 0.00 0.00 2.57
172 173 5.244626 AGTTCTAAGTGCCTGCAAAAATCAT 59.755 36.000 0.00 0.00 0.00 2.45
173 174 5.314923 TCTAAGTGCCTGCAAAAATCATC 57.685 39.130 0.00 0.00 0.00 2.92
174 175 4.766373 TCTAAGTGCCTGCAAAAATCATCA 59.234 37.500 0.00 0.00 0.00 3.07
175 176 4.546829 AAGTGCCTGCAAAAATCATCAT 57.453 36.364 0.00 0.00 0.00 2.45
176 177 3.857052 AGTGCCTGCAAAAATCATCATG 58.143 40.909 0.00 0.00 0.00 3.07
177 178 3.512329 AGTGCCTGCAAAAATCATCATGA 59.488 39.130 0.00 0.00 0.00 3.07
178 179 4.020928 AGTGCCTGCAAAAATCATCATGAA 60.021 37.500 0.00 0.00 0.00 2.57
179 180 4.691685 GTGCCTGCAAAAATCATCATGAAA 59.308 37.500 0.00 0.00 0.00 2.69
180 181 5.353123 GTGCCTGCAAAAATCATCATGAAAT 59.647 36.000 0.00 0.00 0.00 2.17
181 182 5.583061 TGCCTGCAAAAATCATCATGAAATC 59.417 36.000 0.00 0.00 0.00 2.17
182 183 5.583061 GCCTGCAAAAATCATCATGAAATCA 59.417 36.000 0.00 0.00 0.00 2.57
183 184 6.456449 GCCTGCAAAAATCATCATGAAATCAC 60.456 38.462 0.00 0.00 0.00 3.06
184 185 6.592220 CCTGCAAAAATCATCATGAAATCACA 59.408 34.615 0.00 0.00 0.00 3.58
185 186 7.279981 CCTGCAAAAATCATCATGAAATCACAT 59.720 33.333 0.00 0.00 0.00 3.21
186 187 8.554835 TGCAAAAATCATCATGAAATCACATT 57.445 26.923 0.00 0.00 0.00 2.71
187 188 8.661257 TGCAAAAATCATCATGAAATCACATTC 58.339 29.630 0.00 0.00 0.00 2.67
188 189 8.120465 GCAAAAATCATCATGAAATCACATTCC 58.880 33.333 0.00 0.00 0.00 3.01
189 190 9.378551 CAAAAATCATCATGAAATCACATTCCT 57.621 29.630 0.00 0.00 0.00 3.36
190 191 8.942338 AAAATCATCATGAAATCACATTCCTG 57.058 30.769 0.00 0.00 0.00 3.86
191 192 7.655521 AATCATCATGAAATCACATTCCTGT 57.344 32.000 0.00 0.00 35.44 4.00
192 193 8.756486 AATCATCATGAAATCACATTCCTGTA 57.244 30.769 0.00 0.00 33.14 2.74
193 194 8.756486 ATCATCATGAAATCACATTCCTGTAA 57.244 30.769 0.00 0.00 33.14 2.41
194 195 8.217131 TCATCATGAAATCACATTCCTGTAAG 57.783 34.615 0.00 0.00 33.14 2.34
231 232 8.898983 AAAAACAAATTCAGTGCTTCAAAATG 57.101 26.923 0.00 0.00 0.00 2.32
232 233 5.662211 ACAAATTCAGTGCTTCAAAATGC 57.338 34.783 0.00 0.00 0.00 3.56
233 234 5.362263 ACAAATTCAGTGCTTCAAAATGCT 58.638 33.333 0.00 0.00 0.00 3.79
234 235 5.818857 ACAAATTCAGTGCTTCAAAATGCTT 59.181 32.000 0.00 0.00 0.00 3.91
235 236 6.316890 ACAAATTCAGTGCTTCAAAATGCTTT 59.683 30.769 0.00 0.00 0.00 3.51
236 237 6.930667 AATTCAGTGCTTCAAAATGCTTTT 57.069 29.167 0.00 0.00 0.00 2.27
291 292 2.897271 TTTTGCCATGCCTTCTAGGA 57.103 45.000 0.00 0.00 37.67 2.94
292 293 2.897271 TTTGCCATGCCTTCTAGGAA 57.103 45.000 0.00 0.00 37.67 3.36
293 294 3.386932 TTTGCCATGCCTTCTAGGAAT 57.613 42.857 0.00 0.00 37.67 3.01
301 302 6.069684 CATGCCTTCTAGGAATGTGATTTC 57.930 41.667 5.64 0.00 44.91 2.17
302 303 5.178096 TGCCTTCTAGGAATGTGATTTCA 57.822 39.130 0.00 0.00 37.67 2.69
303 304 5.759059 TGCCTTCTAGGAATGTGATTTCAT 58.241 37.500 0.00 0.00 37.67 2.57
304 305 5.591472 TGCCTTCTAGGAATGTGATTTCATG 59.409 40.000 0.00 0.00 37.67 3.07
305 306 5.824624 GCCTTCTAGGAATGTGATTTCATGA 59.175 40.000 0.00 0.00 37.67 3.07
306 307 6.238593 GCCTTCTAGGAATGTGATTTCATGAC 60.239 42.308 0.00 0.00 37.67 3.06
307 308 6.018425 CCTTCTAGGAATGTGATTTCATGACG 60.018 42.308 0.00 0.00 37.67 4.35
308 309 6.220726 TCTAGGAATGTGATTTCATGACGA 57.779 37.500 0.00 0.00 0.00 4.20
309 310 6.639563 TCTAGGAATGTGATTTCATGACGAA 58.360 36.000 0.00 0.00 0.00 3.85
310 311 7.275183 TCTAGGAATGTGATTTCATGACGAAT 58.725 34.615 0.00 0.00 32.32 3.34
311 312 6.764308 AGGAATGTGATTTCATGACGAATT 57.236 33.333 0.00 0.00 32.32 2.17
312 313 7.161773 AGGAATGTGATTTCATGACGAATTT 57.838 32.000 0.00 0.00 32.32 1.82
313 314 7.605449 AGGAATGTGATTTCATGACGAATTTT 58.395 30.769 0.00 0.00 32.32 1.82
314 315 8.090214 AGGAATGTGATTTCATGACGAATTTTT 58.910 29.630 0.00 0.00 32.32 1.94
315 316 8.164153 GGAATGTGATTTCATGACGAATTTTTG 58.836 33.333 0.00 0.00 32.32 2.44
316 317 6.450845 TGTGATTTCATGACGAATTTTTGC 57.549 33.333 0.00 0.00 32.32 3.68
317 318 5.981915 TGTGATTTCATGACGAATTTTTGCA 59.018 32.000 0.00 0.00 32.32 4.08
318 319 6.478016 TGTGATTTCATGACGAATTTTTGCAA 59.522 30.769 0.00 0.00 32.32 4.08
319 320 7.005380 GTGATTTCATGACGAATTTTTGCAAG 58.995 34.615 0.00 0.00 32.32 4.01
320 321 4.970472 TTCATGACGAATTTTTGCAAGC 57.030 36.364 0.00 0.00 0.00 4.01
321 322 3.974912 TCATGACGAATTTTTGCAAGCA 58.025 36.364 0.00 0.00 0.00 3.91
322 323 3.735240 TCATGACGAATTTTTGCAAGCAC 59.265 39.130 0.00 0.00 0.00 4.40
323 324 3.435105 TGACGAATTTTTGCAAGCACT 57.565 38.095 0.00 0.00 0.00 4.40
324 325 3.779759 TGACGAATTTTTGCAAGCACTT 58.220 36.364 0.00 0.00 0.00 3.16
325 326 4.926244 TGACGAATTTTTGCAAGCACTTA 58.074 34.783 0.00 0.00 0.00 2.24
326 327 4.975502 TGACGAATTTTTGCAAGCACTTAG 59.024 37.500 0.00 0.00 0.00 2.18
327 328 5.181690 ACGAATTTTTGCAAGCACTTAGA 57.818 34.783 0.00 0.00 0.00 2.10
328 329 5.587289 ACGAATTTTTGCAAGCACTTAGAA 58.413 33.333 0.00 0.00 0.00 2.10
329 330 5.458779 ACGAATTTTTGCAAGCACTTAGAAC 59.541 36.000 0.00 0.00 0.00 3.01
330 331 5.687285 CGAATTTTTGCAAGCACTTAGAACT 59.313 36.000 0.00 0.00 0.00 3.01
331 332 6.198966 CGAATTTTTGCAAGCACTTAGAACTT 59.801 34.615 0.00 0.00 0.00 2.66
332 333 7.254084 CGAATTTTTGCAAGCACTTAGAACTTT 60.254 33.333 0.00 0.00 0.00 2.66
333 334 7.848223 ATTTTTGCAAGCACTTAGAACTTTT 57.152 28.000 0.00 0.00 0.00 2.27
334 335 6.645700 TTTTGCAAGCACTTAGAACTTTTG 57.354 33.333 0.00 0.00 0.00 2.44
335 336 4.981806 TGCAAGCACTTAGAACTTTTGT 57.018 36.364 0.00 0.00 0.00 2.83
336 337 4.920376 TGCAAGCACTTAGAACTTTTGTC 58.080 39.130 0.00 0.00 0.00 3.18
337 338 4.397730 TGCAAGCACTTAGAACTTTTGTCA 59.602 37.500 0.00 0.00 0.00 3.58
338 339 5.105957 TGCAAGCACTTAGAACTTTTGTCAA 60.106 36.000 0.00 0.00 0.00 3.18
339 340 5.979517 GCAAGCACTTAGAACTTTTGTCAAT 59.020 36.000 0.00 0.00 0.00 2.57
340 341 6.074676 GCAAGCACTTAGAACTTTTGTCAATG 60.075 38.462 0.00 0.00 0.00 2.82
341 342 6.699575 AGCACTTAGAACTTTTGTCAATGT 57.300 33.333 0.00 0.00 0.00 2.71
342 343 7.100458 AGCACTTAGAACTTTTGTCAATGTT 57.900 32.000 4.72 4.72 33.94 2.71
343 344 7.547227 AGCACTTAGAACTTTTGTCAATGTTT 58.453 30.769 6.10 0.00 31.96 2.83
344 345 7.702348 AGCACTTAGAACTTTTGTCAATGTTTC 59.298 33.333 6.10 1.04 31.96 2.78
345 346 7.702348 GCACTTAGAACTTTTGTCAATGTTTCT 59.298 33.333 6.10 6.96 31.96 2.52
346 347 9.226345 CACTTAGAACTTTTGTCAATGTTTCTC 57.774 33.333 6.42 0.00 31.96 2.87
347 348 8.406297 ACTTAGAACTTTTGTCAATGTTTCTCC 58.594 33.333 6.42 0.00 31.96 3.71
348 349 6.149129 AGAACTTTTGTCAATGTTTCTCCC 57.851 37.500 6.10 0.00 31.96 4.30
349 350 5.656416 AGAACTTTTGTCAATGTTTCTCCCA 59.344 36.000 6.10 0.00 31.96 4.37
350 351 5.930837 ACTTTTGTCAATGTTTCTCCCAA 57.069 34.783 0.00 0.00 0.00 4.12
351 352 6.293004 ACTTTTGTCAATGTTTCTCCCAAA 57.707 33.333 0.00 0.00 0.00 3.28
352 353 6.706295 ACTTTTGTCAATGTTTCTCCCAAAA 58.294 32.000 0.00 0.00 0.00 2.44
353 354 7.164803 ACTTTTGTCAATGTTTCTCCCAAAAA 58.835 30.769 0.00 0.00 32.07 1.94
405 406 9.758651 ATTTAGTTTTGATTTTACTGTTCACCC 57.241 29.630 0.00 0.00 0.00 4.61
406 407 5.827666 AGTTTTGATTTTACTGTTCACCCG 58.172 37.500 0.00 0.00 0.00 5.28
407 408 5.591067 AGTTTTGATTTTACTGTTCACCCGA 59.409 36.000 0.00 0.00 0.00 5.14
408 409 5.682943 TTTGATTTTACTGTTCACCCGAG 57.317 39.130 0.00 0.00 0.00 4.63
409 410 3.071479 TGATTTTACTGTTCACCCGAGC 58.929 45.455 0.00 0.00 0.00 5.03
410 411 2.922740 TTTTACTGTTCACCCGAGCT 57.077 45.000 0.00 0.00 0.00 4.09
411 412 2.450609 TTTACTGTTCACCCGAGCTC 57.549 50.000 2.73 2.73 0.00 4.09
412 413 1.334160 TTACTGTTCACCCGAGCTCA 58.666 50.000 15.40 0.00 0.00 4.26
413 414 1.557099 TACTGTTCACCCGAGCTCAT 58.443 50.000 15.40 0.00 0.00 2.90
414 415 0.687354 ACTGTTCACCCGAGCTCATT 59.313 50.000 15.40 0.00 0.00 2.57
415 416 1.072331 ACTGTTCACCCGAGCTCATTT 59.928 47.619 15.40 0.00 0.00 2.32
416 417 1.466167 CTGTTCACCCGAGCTCATTTG 59.534 52.381 15.40 6.81 0.00 2.32
417 418 1.071542 TGTTCACCCGAGCTCATTTGA 59.928 47.619 15.40 9.18 0.00 2.69
418 419 1.734465 GTTCACCCGAGCTCATTTGAG 59.266 52.381 15.40 3.13 44.75 3.02
427 428 2.093216 CTCATTTGAGCTCGGGTGC 58.907 57.895 9.64 0.00 35.13 5.01
428 429 0.674581 CTCATTTGAGCTCGGGTGCA 60.675 55.000 9.64 0.00 35.13 4.57
429 430 0.674581 TCATTTGAGCTCGGGTGCAG 60.675 55.000 9.64 0.00 34.99 4.41
430 431 0.674581 CATTTGAGCTCGGGTGCAGA 60.675 55.000 9.64 0.00 34.99 4.26
431 432 0.036732 ATTTGAGCTCGGGTGCAGAA 59.963 50.000 9.64 0.00 34.99 3.02
432 433 0.179032 TTTGAGCTCGGGTGCAGAAA 60.179 50.000 9.64 0.00 34.99 2.52
433 434 0.884704 TTGAGCTCGGGTGCAGAAAC 60.885 55.000 9.64 0.00 34.99 2.78
434 435 1.004440 GAGCTCGGGTGCAGAAACT 60.004 57.895 0.00 0.00 34.99 2.66
435 436 1.004440 AGCTCGGGTGCAGAAACTC 60.004 57.895 0.00 0.00 34.99 3.01
436 437 2.035442 GCTCGGGTGCAGAAACTCC 61.035 63.158 0.00 0.00 0.00 3.85
437 438 1.738099 CTCGGGTGCAGAAACTCCG 60.738 63.158 0.00 0.00 41.80 4.63
438 439 3.423154 CGGGTGCAGAAACTCCGC 61.423 66.667 0.00 0.00 34.17 5.54
439 440 3.423154 GGGTGCAGAAACTCCGCG 61.423 66.667 0.00 0.00 0.00 6.46
443 444 3.119096 GCAGAAACTCCGCGTCCC 61.119 66.667 4.92 0.00 0.00 4.46
527 528 2.047560 AGGAGCGCCCAACGTTAC 60.048 61.111 15.92 0.00 46.11 2.50
537 540 0.865769 CCAACGTTACAGTGAGTGGC 59.134 55.000 0.00 0.00 0.00 5.01
538 541 1.577468 CAACGTTACAGTGAGTGGCA 58.423 50.000 0.00 0.00 0.00 4.92
788 791 2.029666 GCAGCTGTGTCAGGACGT 59.970 61.111 16.64 0.00 31.21 4.34
793 796 1.883732 CTGTGTCAGGACGTCGGAT 59.116 57.895 9.92 0.00 0.00 4.18
808 812 5.677567 ACGTCGGATAGGGAAATATGTTTT 58.322 37.500 0.00 0.00 0.00 2.43
809 813 6.117488 ACGTCGGATAGGGAAATATGTTTTT 58.883 36.000 0.00 0.00 0.00 1.94
850 855 3.071023 CAGGAAGTAAGAAGGTGGTCACA 59.929 47.826 3.40 0.00 0.00 3.58
871 876 1.202417 CGCGTGGTGGTTAGATCTGAT 60.202 52.381 5.18 0.00 0.00 2.90
874 879 3.068307 GCGTGGTGGTTAGATCTGATAGT 59.932 47.826 5.18 0.00 0.00 2.12
875 880 4.277672 GCGTGGTGGTTAGATCTGATAGTA 59.722 45.833 5.18 0.00 0.00 1.82
964 969 1.607801 GGGCTCCCAATGAACAAGGC 61.608 60.000 0.00 0.00 35.81 4.35
965 970 0.899717 GGCTCCCAATGAACAAGGCA 60.900 55.000 0.00 0.00 33.14 4.75
966 971 1.188863 GCTCCCAATGAACAAGGCAT 58.811 50.000 0.00 0.00 0.00 4.40
967 972 1.551883 GCTCCCAATGAACAAGGCATT 59.448 47.619 0.00 0.00 36.45 3.56
968 973 2.027837 GCTCCCAATGAACAAGGCATTT 60.028 45.455 0.00 0.00 33.93 2.32
969 974 3.557686 GCTCCCAATGAACAAGGCATTTT 60.558 43.478 0.00 0.00 33.93 1.82
970 975 4.644498 CTCCCAATGAACAAGGCATTTTT 58.356 39.130 0.00 0.00 33.93 1.94
1063 1068 0.037590 TCTGGCCCAAAATACTGCGT 59.962 50.000 0.00 0.00 0.00 5.24
1190 1207 1.009078 CGCCATCGAAGCATCAGAAA 58.991 50.000 10.92 0.00 38.10 2.52
1386 1403 0.468226 AGTTCGGCAACAAGGTCTCA 59.532 50.000 0.00 0.00 34.60 3.27
1418 1435 4.176271 GGCAACAAGTATGCAAATTCTCC 58.824 43.478 0.00 0.00 45.60 3.71
1487 1504 4.811555 TTCCGAACTGTAATGCATATGC 57.188 40.909 21.09 21.09 42.50 3.14
1503 1520 1.742761 ATGCTCAGTCGTTGGAATGG 58.257 50.000 0.00 0.00 38.72 3.16
1505 1522 1.026718 GCTCAGTCGTTGGAATGGGG 61.027 60.000 0.00 0.00 39.12 4.96
1540 1557 6.300902 CGTTTGACGTTTCTTGAGATCATTTC 59.699 38.462 0.00 0.00 36.74 2.17
1541 1558 5.515548 TGACGTTTCTTGAGATCATTTCG 57.484 39.130 0.00 0.00 0.00 3.46
1542 1559 5.227152 TGACGTTTCTTGAGATCATTTCGA 58.773 37.500 0.00 0.00 0.00 3.71
1543 1560 5.869344 TGACGTTTCTTGAGATCATTTCGAT 59.131 36.000 0.00 0.00 36.91 3.59
1544 1561 6.368791 TGACGTTTCTTGAGATCATTTCGATT 59.631 34.615 0.00 0.00 33.17 3.34
1545 1562 7.095229 TGACGTTTCTTGAGATCATTTCGATTT 60.095 33.333 0.00 0.00 33.17 2.17
1546 1563 7.017645 ACGTTTCTTGAGATCATTTCGATTTG 58.982 34.615 0.00 0.00 33.17 2.32
1547 1564 7.095229 ACGTTTCTTGAGATCATTTCGATTTGA 60.095 33.333 0.00 0.85 33.17 2.69
1548 1565 7.424738 CGTTTCTTGAGATCATTTCGATTTGAG 59.575 37.037 0.00 0.00 33.17 3.02
1549 1566 7.912056 TTCTTGAGATCATTTCGATTTGAGT 57.088 32.000 0.00 0.00 33.17 3.41
1550 1567 7.299787 TCTTGAGATCATTTCGATTTGAGTG 57.700 36.000 0.00 0.00 33.17 3.51
1551 1568 6.314648 TCTTGAGATCATTTCGATTTGAGTGG 59.685 38.462 0.00 0.00 33.17 4.00
1552 1569 4.877823 TGAGATCATTTCGATTTGAGTGGG 59.122 41.667 0.00 0.00 33.17 4.61
1553 1570 4.202441 AGATCATTTCGATTTGAGTGGGG 58.798 43.478 0.00 0.00 33.17 4.96
1554 1571 3.433306 TCATTTCGATTTGAGTGGGGT 57.567 42.857 0.00 0.00 0.00 4.95
1555 1572 3.081061 TCATTTCGATTTGAGTGGGGTG 58.919 45.455 0.00 0.00 0.00 4.61
1576 1593 2.698763 GGAGGGGACGTGACGAGTC 61.699 68.421 13.70 0.00 37.86 3.36
1581 1598 1.286260 GGACGTGACGAGTCTTGCT 59.714 57.895 13.70 0.00 38.58 3.91
1618 1882 1.807139 TGAGTTGCGAAATGCTGCTA 58.193 45.000 0.00 0.00 46.63 3.49
1634 1898 6.573664 TGCTGCTATTGTTAGTTCATGTTT 57.426 33.333 0.00 0.00 0.00 2.83
1635 1899 7.680442 TGCTGCTATTGTTAGTTCATGTTTA 57.320 32.000 0.00 0.00 0.00 2.01
1636 1900 8.105097 TGCTGCTATTGTTAGTTCATGTTTAA 57.895 30.769 0.00 0.00 0.00 1.52
1637 1901 8.572185 TGCTGCTATTGTTAGTTCATGTTTAAA 58.428 29.630 0.00 0.00 0.00 1.52
1638 1902 9.405587 GCTGCTATTGTTAGTTCATGTTTAAAA 57.594 29.630 0.00 0.00 0.00 1.52
1665 1929 7.745620 ATTGACTTGGATTCTAAGTTTTCGT 57.254 32.000 15.53 0.00 38.42 3.85
1666 1930 8.842358 ATTGACTTGGATTCTAAGTTTTCGTA 57.158 30.769 15.53 1.12 38.42 3.43
1667 1931 7.884816 TGACTTGGATTCTAAGTTTTCGTAG 57.115 36.000 15.53 0.00 38.42 3.51
1668 1932 7.663827 TGACTTGGATTCTAAGTTTTCGTAGA 58.336 34.615 15.53 0.00 38.42 2.59
1685 1949 4.083003 TCGTAGAAAATGCCACAAATCACC 60.083 41.667 0.00 0.00 0.00 4.02
2131 2395 8.779354 ACATATTTGTTAGGACTGTTCTCTTC 57.221 34.615 0.00 0.00 29.55 2.87
2151 2415 1.129251 CGATAGCTTGCACACTGGTTG 59.871 52.381 0.00 0.00 0.00 3.77
2185 2449 2.704464 TCTCATTCACATGGCTGAGG 57.296 50.000 12.95 0.70 36.59 3.86
2262 2526 3.004629 TCATGTCCACACAAGCACAAATC 59.995 43.478 0.00 0.00 35.64 2.17
2264 2528 0.310543 TCCACACAAGCACAAATCGC 59.689 50.000 0.00 0.00 0.00 4.58
2269 2533 2.224018 ACACAAGCACAAATCGCCAATT 60.224 40.909 0.00 0.00 0.00 2.32
2302 2567 8.815565 TCCTATTATTGTTTTGATGCCTGTAA 57.184 30.769 0.00 0.00 0.00 2.41
2307 2572 9.941325 ATTATTGTTTTGATGCCTGTAATTTCA 57.059 25.926 0.00 0.00 0.00 2.69
2314 2579 7.517614 TTGATGCCTGTAATTTCAACAGTTA 57.482 32.000 6.19 0.00 42.30 2.24
2399 2664 3.445008 ACTCACCTTCTTCTATGCCTCA 58.555 45.455 0.00 0.00 0.00 3.86
2413 2678 0.030773 GCCTCATCGTCGCTCATGTA 59.969 55.000 0.00 0.00 0.00 2.29
2426 2691 1.188871 TCATGTAGACCGTGTGGCCA 61.189 55.000 0.00 0.00 39.70 5.36
2429 2694 3.702048 TAGACCGTGTGGCCAGCC 61.702 66.667 5.11 0.38 39.70 4.85
2457 2722 0.248825 CTCCTTCTGGTCTGCGATCG 60.249 60.000 11.69 11.69 34.23 3.69
2504 2770 0.312416 CTCGTTGATAGGAGGAGGCG 59.688 60.000 0.00 0.00 33.63 5.52
2521 2787 1.225104 CGCGTCGTCGTGTTGAATG 60.225 57.895 7.45 0.00 41.80 2.67
2565 2831 4.807834 CGATCTCACTGTGATGCTAATTGT 59.192 41.667 11.45 0.00 0.00 2.71
2589 2866 4.218417 GTGACTTTAGGGGTACGTGACTTA 59.782 45.833 0.00 0.00 0.00 2.24
2980 3258 7.889873 AGCTAGATACCTAATCGCTATCAAT 57.110 36.000 0.00 0.00 39.79 2.57
3065 3343 7.765695 AGATTGTTCACCTGTGTAATTGATT 57.234 32.000 0.00 0.00 0.00 2.57
3165 3547 5.371115 TTGTACTGGCTTTGATAGTTTGC 57.629 39.130 0.00 0.00 0.00 3.68
3214 3596 6.505044 TTGATGATTGGAATGTCAAGAGTG 57.495 37.500 0.00 0.00 0.00 3.51
3232 3614 5.515106 AGAGTGTAGAAGATTAGGCAGACT 58.485 41.667 0.00 0.00 0.00 3.24
3351 3734 2.654749 GCCCCAAGCAACAAATAGAC 57.345 50.000 0.00 0.00 42.97 2.59
3378 3761 1.612463 GGATCGTACGGGTTGATAGCT 59.388 52.381 16.52 0.00 0.00 3.32
3442 3825 7.937700 TCCTCCAGAATAGTTTGGATAAGAT 57.062 36.000 2.57 0.00 42.32 2.40
3516 3899 3.087031 CAGATGCCATTTGACAAGGACT 58.913 45.455 0.00 0.00 0.00 3.85
3675 4058 4.401925 AGGTCATGAAAACAGAGAAAGGG 58.598 43.478 0.00 0.00 0.00 3.95
3725 4108 1.774254 TCAGAAAGCTGGTCAGGGAAA 59.226 47.619 0.00 0.00 42.53 3.13
3732 4115 2.243221 AGCTGGTCAGGGAAATTAGCAT 59.757 45.455 0.00 0.00 32.42 3.79
3746 4129 5.389859 AATTAGCATGCTGTTTACTTGCA 57.610 34.783 30.42 2.54 39.83 4.08
3747 4130 4.844998 TTAGCATGCTGTTTACTTGCAA 57.155 36.364 30.42 9.29 39.83 4.08
3748 4131 3.731652 AGCATGCTGTTTACTTGCAAA 57.268 38.095 21.98 0.00 39.83 3.68
3754 4137 5.452078 TGCTGTTTACTTGCAAAAGCTAT 57.548 34.783 0.00 0.00 33.48 2.97
3756 4139 4.090498 GCTGTTTACTTGCAAAAGCTATGC 59.910 41.667 15.55 15.55 44.08 3.14
3772 4155 5.380043 AGCTATGCTATGCCACACTATTTT 58.620 37.500 0.00 0.00 36.99 1.82
3901 4284 4.579384 ACCAGGCCCAACACCGTG 62.579 66.667 0.00 0.00 0.00 4.94
3915 4298 5.523188 CCAACACCGTGTTAAACTGTTAGTA 59.477 40.000 16.44 0.00 38.77 1.82
3924 4307 6.598064 GTGTTAAACTGTTAGTATGGCCTCAT 59.402 38.462 3.32 0.00 37.40 2.90
4172 4572 7.502895 ACAACACACATAACATAAACACCCTAA 59.497 33.333 0.00 0.00 0.00 2.69
4250 4650 2.726821 TCTTGATTCCATTGGGCACTC 58.273 47.619 2.09 0.00 0.00 3.51
4256 4656 1.077212 CCATTGGGCACTCTCAGGG 60.077 63.158 0.00 0.00 0.00 4.45
4273 4673 2.529744 GGTGTCCTTGCTCACCCCT 61.530 63.158 3.29 0.00 45.70 4.79
4274 4674 1.456287 GTGTCCTTGCTCACCCCTT 59.544 57.895 0.00 0.00 0.00 3.95
4275 4675 0.890996 GTGTCCTTGCTCACCCCTTG 60.891 60.000 0.00 0.00 0.00 3.61
4276 4676 1.303643 GTCCTTGCTCACCCCTTGG 60.304 63.158 0.00 0.00 37.80 3.61
4277 4677 2.677875 CCTTGCTCACCCCTTGGC 60.678 66.667 0.00 0.00 33.59 4.52
4278 4678 2.677875 CTTGCTCACCCCTTGGCC 60.678 66.667 0.00 0.00 33.59 5.36
4279 4679 4.299796 TTGCTCACCCCTTGGCCC 62.300 66.667 0.00 0.00 33.59 5.80
4323 4723 1.202879 TCACACCAGATGGACCAAACC 60.203 52.381 5.72 0.00 38.94 3.27
4539 4939 7.815840 TCTTGATGGTGTTTACTTGATTCAA 57.184 32.000 0.00 0.00 0.00 2.69
4540 4940 7.648142 TCTTGATGGTGTTTACTTGATTCAAC 58.352 34.615 0.00 0.00 0.00 3.18
4921 5962 8.184192 CGATCTTTGTATATTGAGCACCTTTTT 58.816 33.333 0.00 0.00 0.00 1.94
5008 6049 8.771920 ACGTCTTTTCAGTTATATTCATGACA 57.228 30.769 0.00 0.00 0.00 3.58
5194 6235 0.772124 AGTTGGCTTCTTCCCTCCCA 60.772 55.000 0.00 0.00 0.00 4.37
5653 6694 7.959658 TGACTCATTATTGGTCCATTTGAAT 57.040 32.000 0.00 0.00 0.00 2.57
5726 6767 6.980051 TGATGTCATCTTTCTCTTGTGATG 57.020 37.500 13.90 0.00 38.03 3.07
5771 6814 5.880054 ATTGTCTGCATAGGTGTTACAAC 57.120 39.130 0.00 0.00 31.27 3.32
5838 6882 7.746703 GGTACCTGGGTCTAATTATCTGATTT 58.253 38.462 4.06 0.00 0.00 2.17
5929 7079 5.248934 TCAATTTCAGATGGGCCATTTTCTT 59.751 36.000 22.20 7.26 0.00 2.52
5941 7091 3.745975 GCCATTTTCTTGCCCAAAGTTAC 59.254 43.478 0.00 0.00 37.18 2.50
6061 7213 4.949856 GGGGAGAATATCTTGCAAGTCAAA 59.050 41.667 25.19 7.20 33.65 2.69
6327 7479 6.127897 GCATTTGGTAGCTGATTTCTGTTACT 60.128 38.462 0.00 0.00 33.99 2.24
6328 7480 7.467623 CATTTGGTAGCTGATTTCTGTTACTC 58.532 38.462 0.00 3.76 33.99 2.59
6329 7481 5.086104 TGGTAGCTGATTTCTGTTACTCC 57.914 43.478 0.00 0.00 33.99 3.85
6330 7482 4.081087 TGGTAGCTGATTTCTGTTACTCCC 60.081 45.833 0.00 0.00 33.99 4.30
6331 7483 4.162509 GGTAGCTGATTTCTGTTACTCCCT 59.837 45.833 0.00 0.00 33.99 4.20
6332 7484 4.479786 AGCTGATTTCTGTTACTCCCTC 57.520 45.455 0.00 0.00 0.00 4.30
6333 7485 3.198853 AGCTGATTTCTGTTACTCCCTCC 59.801 47.826 0.00 0.00 0.00 4.30
6334 7486 3.786635 CTGATTTCTGTTACTCCCTCCG 58.213 50.000 0.00 0.00 0.00 4.63
6335 7487 3.170717 TGATTTCTGTTACTCCCTCCGT 58.829 45.455 0.00 0.00 0.00 4.69
6336 7488 3.581332 TGATTTCTGTTACTCCCTCCGTT 59.419 43.478 0.00 0.00 0.00 4.44
6337 7489 3.672767 TTTCTGTTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
6338 7490 1.553706 TCTGTTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
6339 7491 1.203087 TCTGTTACTCCCTCCGTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
6340 7492 1.621814 CTGTTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
6341 7493 2.038033 CTGTTACTCCCTCCGTTCCAAA 59.962 50.000 0.00 0.00 0.00 3.28
6342 7494 2.438763 TGTTACTCCCTCCGTTCCAAAA 59.561 45.455 0.00 0.00 0.00 2.44
6343 7495 3.073356 TGTTACTCCCTCCGTTCCAAAAT 59.927 43.478 0.00 0.00 0.00 1.82
6344 7496 4.286549 TGTTACTCCCTCCGTTCCAAAATA 59.713 41.667 0.00 0.00 0.00 1.40
6345 7497 5.045432 TGTTACTCCCTCCGTTCCAAAATAT 60.045 40.000 0.00 0.00 0.00 1.28
6346 7498 4.586306 ACTCCCTCCGTTCCAAAATATT 57.414 40.909 0.00 0.00 0.00 1.28
6347 7499 4.930696 ACTCCCTCCGTTCCAAAATATTT 58.069 39.130 0.00 0.00 0.00 1.40
6348 7500 4.705023 ACTCCCTCCGTTCCAAAATATTTG 59.295 41.667 0.39 0.00 0.00 2.32
6349 7501 4.668636 TCCCTCCGTTCCAAAATATTTGT 58.331 39.130 0.39 0.00 0.00 2.83
6350 7502 4.703093 TCCCTCCGTTCCAAAATATTTGTC 59.297 41.667 0.39 0.00 0.00 3.18
6351 7503 4.705023 CCCTCCGTTCCAAAATATTTGTCT 59.295 41.667 0.39 0.00 0.00 3.41
6352 7504 5.185056 CCCTCCGTTCCAAAATATTTGTCTT 59.815 40.000 0.39 0.00 0.00 3.01
6353 7505 6.295067 CCCTCCGTTCCAAAATATTTGTCTTT 60.295 38.462 0.39 0.00 0.00 2.52
6354 7506 6.806739 CCTCCGTTCCAAAATATTTGTCTTTC 59.193 38.462 0.39 0.00 0.00 2.62
6355 7507 7.309194 CCTCCGTTCCAAAATATTTGTCTTTCT 60.309 37.037 0.39 0.00 0.00 2.52
6356 7508 8.624367 TCCGTTCCAAAATATTTGTCTTTCTA 57.376 30.769 0.39 0.00 0.00 2.10
6357 7509 9.069082 TCCGTTCCAAAATATTTGTCTTTCTAA 57.931 29.630 0.39 0.00 0.00 2.10
6358 7510 9.685828 CCGTTCCAAAATATTTGTCTTTCTAAA 57.314 29.630 0.39 0.00 0.00 1.85
6372 7524 9.787532 TTGTCTTTCTAAAGATTTCAACAAGTG 57.212 29.630 8.31 0.00 45.83 3.16
6373 7525 9.173021 TGTCTTTCTAAAGATTTCAACAAGTGA 57.827 29.630 8.31 0.00 45.83 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.655733 AGCACTTTCGTTCACAACCG 59.344 50.000 0.00 0.00 0.00 4.44
54 55 1.332904 CCGAGCACTTTCGTTCACAAC 60.333 52.381 0.00 0.00 38.88 3.32
55 56 0.934496 CCGAGCACTTTCGTTCACAA 59.066 50.000 0.00 0.00 38.88 3.33
56 57 0.179094 ACCGAGCACTTTCGTTCACA 60.179 50.000 0.00 0.00 38.88 3.58
57 58 0.232303 CACCGAGCACTTTCGTTCAC 59.768 55.000 0.00 0.00 38.88 3.18
58 59 0.103390 TCACCGAGCACTTTCGTTCA 59.897 50.000 0.00 0.00 38.88 3.18
59 60 1.070776 GTTCACCGAGCACTTTCGTTC 60.071 52.381 0.00 0.00 38.88 3.95
60 61 0.935196 GTTCACCGAGCACTTTCGTT 59.065 50.000 0.00 0.00 38.88 3.85
61 62 0.179094 TGTTCACCGAGCACTTTCGT 60.179 50.000 0.00 0.00 38.88 3.85
62 63 0.508641 CTGTTCACCGAGCACTTTCG 59.491 55.000 0.00 0.00 40.18 3.46
63 64 1.583054 ACTGTTCACCGAGCACTTTC 58.417 50.000 0.00 0.00 0.00 2.62
64 65 2.902705 TACTGTTCACCGAGCACTTT 57.097 45.000 0.00 0.00 0.00 2.66
65 66 2.902705 TTACTGTTCACCGAGCACTT 57.097 45.000 0.00 0.00 0.00 3.16
66 67 2.902705 TTTACTGTTCACCGAGCACT 57.097 45.000 0.00 0.00 0.00 4.40
67 68 3.423123 CGATTTTACTGTTCACCGAGCAC 60.423 47.826 0.00 0.00 0.00 4.40
68 69 2.734606 CGATTTTACTGTTCACCGAGCA 59.265 45.455 0.00 0.00 0.00 4.26
69 70 2.991190 TCGATTTTACTGTTCACCGAGC 59.009 45.455 0.00 0.00 0.00 5.03
70 71 5.585500 TTTCGATTTTACTGTTCACCGAG 57.415 39.130 0.00 0.00 0.00 4.63
71 72 5.987777 TTTTCGATTTTACTGTTCACCGA 57.012 34.783 0.00 0.00 0.00 4.69
133 134 9.516314 GCACTTAGAACTTTTGTTAATGTTTCT 57.484 29.630 0.00 0.00 43.66 2.52
134 135 8.752254 GGCACTTAGAACTTTTGTTAATGTTTC 58.248 33.333 0.00 0.00 43.66 2.78
135 136 8.474831 AGGCACTTAGAACTTTTGTTAATGTTT 58.525 29.630 0.00 0.00 38.17 2.83
136 137 7.920682 CAGGCACTTAGAACTTTTGTTAATGTT 59.079 33.333 0.00 0.00 39.14 2.71
137 138 7.425606 CAGGCACTTAGAACTTTTGTTAATGT 58.574 34.615 0.00 0.00 39.14 2.71
138 139 6.363357 GCAGGCACTTAGAACTTTTGTTAATG 59.637 38.462 0.00 0.00 39.14 1.90
139 140 6.040391 TGCAGGCACTTAGAACTTTTGTTAAT 59.960 34.615 0.00 0.00 39.14 1.40
140 141 5.358442 TGCAGGCACTTAGAACTTTTGTTAA 59.642 36.000 0.00 0.00 39.14 2.01
141 142 4.884744 TGCAGGCACTTAGAACTTTTGTTA 59.115 37.500 0.00 0.00 39.14 2.41
142 143 3.699038 TGCAGGCACTTAGAACTTTTGTT 59.301 39.130 0.00 0.00 41.41 2.83
143 144 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
144 145 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
145 146 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
146 147 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
147 148 5.068987 TGATTTTTGCAGGCACTTAGAACTT 59.931 36.000 0.00 0.00 34.60 2.66
148 149 4.584325 TGATTTTTGCAGGCACTTAGAACT 59.416 37.500 0.00 0.00 34.60 3.01
149 150 4.870363 TGATTTTTGCAGGCACTTAGAAC 58.130 39.130 0.00 0.00 34.60 3.01
150 151 5.243507 TGATGATTTTTGCAGGCACTTAGAA 59.756 36.000 0.00 0.00 34.60 2.10
151 152 4.766373 TGATGATTTTTGCAGGCACTTAGA 59.234 37.500 0.00 0.00 34.60 2.10
152 153 5.063180 TGATGATTTTTGCAGGCACTTAG 57.937 39.130 0.00 0.00 34.60 2.18
153 154 5.185442 TCATGATGATTTTTGCAGGCACTTA 59.815 36.000 0.00 0.00 34.60 2.24
154 155 4.020928 TCATGATGATTTTTGCAGGCACTT 60.021 37.500 0.00 0.00 34.60 3.16
155 156 3.512329 TCATGATGATTTTTGCAGGCACT 59.488 39.130 0.00 0.00 43.88 4.40
156 157 3.852286 TCATGATGATTTTTGCAGGCAC 58.148 40.909 0.00 0.00 0.00 5.01
157 158 4.538746 TTCATGATGATTTTTGCAGGCA 57.461 36.364 0.00 0.00 0.00 4.75
158 159 5.583061 TGATTTCATGATGATTTTTGCAGGC 59.417 36.000 0.00 0.00 0.00 4.85
159 160 6.592220 TGTGATTTCATGATGATTTTTGCAGG 59.408 34.615 0.00 0.00 0.00 4.85
160 161 7.589574 TGTGATTTCATGATGATTTTTGCAG 57.410 32.000 0.00 0.00 0.00 4.41
161 162 8.554835 AATGTGATTTCATGATGATTTTTGCA 57.445 26.923 0.00 0.00 0.00 4.08
162 163 8.120465 GGAATGTGATTTCATGATGATTTTTGC 58.880 33.333 0.00 0.00 0.00 3.68
163 164 9.378551 AGGAATGTGATTTCATGATGATTTTTG 57.621 29.630 0.00 0.00 0.00 2.44
164 165 9.378551 CAGGAATGTGATTTCATGATGATTTTT 57.621 29.630 0.00 0.00 39.18 1.94
165 166 8.537016 ACAGGAATGTGATTTCATGATGATTTT 58.463 29.630 0.00 0.00 39.18 1.82
166 167 8.074613 ACAGGAATGTGATTTCATGATGATTT 57.925 30.769 0.00 0.00 39.18 2.17
167 168 7.655521 ACAGGAATGTGATTTCATGATGATT 57.344 32.000 0.00 0.00 39.18 2.57
168 169 8.756486 TTACAGGAATGTGATTTCATGATGAT 57.244 30.769 0.00 0.00 39.18 2.45
169 170 7.283807 CCTTACAGGAATGTGATTTCATGATGA 59.716 37.037 0.00 0.00 39.18 2.92
170 171 7.423199 CCTTACAGGAATGTGATTTCATGATG 58.577 38.462 0.00 0.00 39.18 3.07
171 172 6.040166 GCCTTACAGGAATGTGATTTCATGAT 59.960 38.462 0.00 0.00 39.18 2.45
172 173 5.357878 GCCTTACAGGAATGTGATTTCATGA 59.642 40.000 5.92 0.00 39.18 3.07
173 174 5.585390 GCCTTACAGGAATGTGATTTCATG 58.415 41.667 0.00 0.00 41.77 3.07
174 175 4.336433 CGCCTTACAGGAATGTGATTTCAT 59.664 41.667 0.00 0.00 37.67 2.57
175 176 3.689161 CGCCTTACAGGAATGTGATTTCA 59.311 43.478 0.00 0.00 37.67 2.69
176 177 3.689649 ACGCCTTACAGGAATGTGATTTC 59.310 43.478 0.00 0.00 37.67 2.17
177 178 3.440173 CACGCCTTACAGGAATGTGATTT 59.560 43.478 0.00 0.00 37.67 2.17
178 179 3.009723 CACGCCTTACAGGAATGTGATT 58.990 45.455 0.00 0.00 37.67 2.57
179 180 2.632377 CACGCCTTACAGGAATGTGAT 58.368 47.619 0.00 0.00 37.67 3.06
180 181 1.338674 CCACGCCTTACAGGAATGTGA 60.339 52.381 10.25 0.00 37.67 3.58
181 182 1.086696 CCACGCCTTACAGGAATGTG 58.913 55.000 0.00 0.00 37.67 3.21
182 183 0.676782 GCCACGCCTTACAGGAATGT 60.677 55.000 0.00 0.00 37.67 2.71
183 184 0.676466 TGCCACGCCTTACAGGAATG 60.676 55.000 0.00 0.00 37.67 2.67
184 185 0.037590 TTGCCACGCCTTACAGGAAT 59.962 50.000 0.00 0.00 37.67 3.01
185 186 0.179015 TTTGCCACGCCTTACAGGAA 60.179 50.000 0.00 0.00 37.67 3.36
186 187 0.179015 TTTTGCCACGCCTTACAGGA 60.179 50.000 0.00 0.00 37.67 3.86
187 188 0.671251 TTTTTGCCACGCCTTACAGG 59.329 50.000 0.00 0.00 38.80 4.00
206 207 7.485595 GCATTTTGAAGCACTGAATTTGTTTTT 59.514 29.630 0.00 0.00 0.00 1.94
207 208 6.968335 GCATTTTGAAGCACTGAATTTGTTTT 59.032 30.769 0.00 0.00 0.00 2.43
208 209 6.316890 AGCATTTTGAAGCACTGAATTTGTTT 59.683 30.769 0.00 0.00 0.00 2.83
209 210 5.818857 AGCATTTTGAAGCACTGAATTTGTT 59.181 32.000 0.00 0.00 0.00 2.83
210 211 5.362263 AGCATTTTGAAGCACTGAATTTGT 58.638 33.333 0.00 0.00 0.00 2.83
211 212 5.917541 AGCATTTTGAAGCACTGAATTTG 57.082 34.783 0.00 0.00 0.00 2.32
212 213 6.930667 AAAGCATTTTGAAGCACTGAATTT 57.069 29.167 0.00 0.00 31.62 1.82
271 272 3.168035 TCCTAGAAGGCATGGCAAAAA 57.832 42.857 22.64 3.19 34.61 1.94
272 273 2.897271 TCCTAGAAGGCATGGCAAAA 57.103 45.000 22.64 2.81 34.61 2.44
273 274 2.897271 TTCCTAGAAGGCATGGCAAA 57.103 45.000 22.64 2.44 34.61 3.68
274 275 2.025037 ACATTCCTAGAAGGCATGGCAA 60.025 45.455 22.64 5.18 42.29 4.52
275 276 1.565759 ACATTCCTAGAAGGCATGGCA 59.434 47.619 22.64 0.00 42.29 4.92
276 277 1.952296 CACATTCCTAGAAGGCATGGC 59.048 52.381 12.14 12.14 42.29 4.40
277 278 3.565764 TCACATTCCTAGAAGGCATGG 57.434 47.619 9.83 0.81 42.29 3.66
278 279 5.591472 TGAAATCACATTCCTAGAAGGCATG 59.409 40.000 4.33 4.33 43.38 4.06
279 280 5.759059 TGAAATCACATTCCTAGAAGGCAT 58.241 37.500 0.00 0.00 34.61 4.40
280 281 5.178096 TGAAATCACATTCCTAGAAGGCA 57.822 39.130 0.00 0.00 34.61 4.75
281 282 5.824624 TCATGAAATCACATTCCTAGAAGGC 59.175 40.000 0.00 0.00 34.61 4.35
282 283 6.018425 CGTCATGAAATCACATTCCTAGAAGG 60.018 42.308 0.00 0.00 36.46 3.46
283 284 6.758416 TCGTCATGAAATCACATTCCTAGAAG 59.242 38.462 0.00 0.00 0.00 2.85
284 285 6.639563 TCGTCATGAAATCACATTCCTAGAA 58.360 36.000 0.00 0.00 0.00 2.10
285 286 6.220726 TCGTCATGAAATCACATTCCTAGA 57.779 37.500 0.00 0.00 0.00 2.43
286 287 6.908870 TTCGTCATGAAATCACATTCCTAG 57.091 37.500 0.00 0.00 32.37 3.02
287 288 7.864108 AATTCGTCATGAAATCACATTCCTA 57.136 32.000 0.00 0.00 40.71 2.94
288 289 6.764308 AATTCGTCATGAAATCACATTCCT 57.236 33.333 0.00 0.00 40.71 3.36
289 290 7.816945 AAAATTCGTCATGAAATCACATTCC 57.183 32.000 0.00 0.00 40.71 3.01
290 291 7.685304 GCAAAAATTCGTCATGAAATCACATTC 59.315 33.333 0.00 0.00 40.71 2.67
291 292 7.171167 TGCAAAAATTCGTCATGAAATCACATT 59.829 29.630 0.00 0.00 40.71 2.71
292 293 6.645827 TGCAAAAATTCGTCATGAAATCACAT 59.354 30.769 0.00 0.00 40.71 3.21
293 294 5.981915 TGCAAAAATTCGTCATGAAATCACA 59.018 32.000 0.00 0.00 40.71 3.58
294 295 6.450845 TGCAAAAATTCGTCATGAAATCAC 57.549 33.333 0.00 0.00 40.71 3.06
295 296 6.346758 GCTTGCAAAAATTCGTCATGAAATCA 60.347 34.615 0.00 0.00 40.71 2.57
296 297 6.011277 GCTTGCAAAAATTCGTCATGAAATC 58.989 36.000 0.00 0.00 40.71 2.17
297 298 5.466058 TGCTTGCAAAAATTCGTCATGAAAT 59.534 32.000 0.00 0.00 40.71 2.17
298 299 4.807834 TGCTTGCAAAAATTCGTCATGAAA 59.192 33.333 0.00 0.00 40.71 2.69
299 300 4.208873 GTGCTTGCAAAAATTCGTCATGAA 59.791 37.500 0.00 0.00 41.81 2.57
300 301 3.735240 GTGCTTGCAAAAATTCGTCATGA 59.265 39.130 0.00 0.00 0.00 3.07
301 302 3.737266 AGTGCTTGCAAAAATTCGTCATG 59.263 39.130 0.00 0.00 0.00 3.07
302 303 3.981211 AGTGCTTGCAAAAATTCGTCAT 58.019 36.364 0.00 0.00 0.00 3.06
303 304 3.435105 AGTGCTTGCAAAAATTCGTCA 57.565 38.095 0.00 0.00 0.00 4.35
304 305 5.212194 TCTAAGTGCTTGCAAAAATTCGTC 58.788 37.500 0.00 0.00 0.00 4.20
305 306 5.181690 TCTAAGTGCTTGCAAAAATTCGT 57.818 34.783 0.00 0.00 0.00 3.85
306 307 5.687285 AGTTCTAAGTGCTTGCAAAAATTCG 59.313 36.000 0.00 0.00 0.00 3.34
307 308 7.468922 AAGTTCTAAGTGCTTGCAAAAATTC 57.531 32.000 0.00 0.00 0.00 2.17
308 309 7.848223 AAAGTTCTAAGTGCTTGCAAAAATT 57.152 28.000 0.00 0.00 0.00 1.82
309 310 7.334171 ACAAAAGTTCTAAGTGCTTGCAAAAAT 59.666 29.630 0.00 0.00 0.00 1.82
310 311 6.648725 ACAAAAGTTCTAAGTGCTTGCAAAAA 59.351 30.769 0.00 0.00 0.00 1.94
311 312 6.162777 ACAAAAGTTCTAAGTGCTTGCAAAA 58.837 32.000 0.00 0.00 0.00 2.44
312 313 5.719173 ACAAAAGTTCTAAGTGCTTGCAAA 58.281 33.333 0.00 0.00 0.00 3.68
313 314 5.105957 TGACAAAAGTTCTAAGTGCTTGCAA 60.106 36.000 0.00 0.00 0.00 4.08
314 315 4.397730 TGACAAAAGTTCTAAGTGCTTGCA 59.602 37.500 0.00 0.00 0.00 4.08
315 316 4.920376 TGACAAAAGTTCTAAGTGCTTGC 58.080 39.130 0.00 0.00 0.00 4.01
316 317 6.974622 ACATTGACAAAAGTTCTAAGTGCTTG 59.025 34.615 0.00 0.00 0.00 4.01
317 318 7.100458 ACATTGACAAAAGTTCTAAGTGCTT 57.900 32.000 0.00 0.00 0.00 3.91
318 319 6.699575 ACATTGACAAAAGTTCTAAGTGCT 57.300 33.333 0.00 0.00 0.00 4.40
319 320 7.702348 AGAAACATTGACAAAAGTTCTAAGTGC 59.298 33.333 9.09 0.00 0.00 4.40
320 321 9.226345 GAGAAACATTGACAAAAGTTCTAAGTG 57.774 33.333 9.09 0.00 0.00 3.16
321 322 8.406297 GGAGAAACATTGACAAAAGTTCTAAGT 58.594 33.333 9.09 0.00 0.00 2.24
322 323 7.862873 GGGAGAAACATTGACAAAAGTTCTAAG 59.137 37.037 9.09 0.00 0.00 2.18
323 324 7.340743 TGGGAGAAACATTGACAAAAGTTCTAA 59.659 33.333 9.09 0.00 0.00 2.10
324 325 6.831353 TGGGAGAAACATTGACAAAAGTTCTA 59.169 34.615 9.09 0.00 0.00 2.10
325 326 5.656416 TGGGAGAAACATTGACAAAAGTTCT 59.344 36.000 9.09 9.17 0.00 3.01
326 327 5.901552 TGGGAGAAACATTGACAAAAGTTC 58.098 37.500 9.09 5.33 0.00 3.01
327 328 5.930837 TGGGAGAAACATTGACAAAAGTT 57.069 34.783 0.00 0.00 0.00 2.66
328 329 5.930837 TTGGGAGAAACATTGACAAAAGT 57.069 34.783 0.00 0.00 0.00 2.66
329 330 7.608308 TTTTTGGGAGAAACATTGACAAAAG 57.392 32.000 0.00 0.00 37.55 2.27
379 380 9.758651 GGGTGAACAGTAAAATCAAAACTAAAT 57.241 29.630 0.00 0.00 0.00 1.40
380 381 7.916450 CGGGTGAACAGTAAAATCAAAACTAAA 59.084 33.333 0.00 0.00 0.00 1.85
381 382 7.282675 TCGGGTGAACAGTAAAATCAAAACTAA 59.717 33.333 0.00 0.00 0.00 2.24
382 383 6.766944 TCGGGTGAACAGTAAAATCAAAACTA 59.233 34.615 0.00 0.00 0.00 2.24
383 384 5.591067 TCGGGTGAACAGTAAAATCAAAACT 59.409 36.000 0.00 0.00 0.00 2.66
384 385 5.823353 TCGGGTGAACAGTAAAATCAAAAC 58.177 37.500 0.00 0.00 0.00 2.43
385 386 5.506649 GCTCGGGTGAACAGTAAAATCAAAA 60.507 40.000 0.00 0.00 0.00 2.44
386 387 4.023536 GCTCGGGTGAACAGTAAAATCAAA 60.024 41.667 0.00 0.00 0.00 2.69
387 388 3.500680 GCTCGGGTGAACAGTAAAATCAA 59.499 43.478 0.00 0.00 0.00 2.57
388 389 3.071479 GCTCGGGTGAACAGTAAAATCA 58.929 45.455 0.00 0.00 0.00 2.57
389 390 3.335579 AGCTCGGGTGAACAGTAAAATC 58.664 45.455 0.00 0.00 0.00 2.17
390 391 3.244422 TGAGCTCGGGTGAACAGTAAAAT 60.244 43.478 9.64 0.00 0.00 1.82
391 392 2.103432 TGAGCTCGGGTGAACAGTAAAA 59.897 45.455 9.64 0.00 0.00 1.52
392 393 1.689813 TGAGCTCGGGTGAACAGTAAA 59.310 47.619 9.64 0.00 0.00 2.01
393 394 1.334160 TGAGCTCGGGTGAACAGTAA 58.666 50.000 9.64 0.00 0.00 2.24
394 395 1.557099 ATGAGCTCGGGTGAACAGTA 58.443 50.000 9.64 0.00 0.00 2.74
395 396 0.687354 AATGAGCTCGGGTGAACAGT 59.313 50.000 9.64 0.00 0.00 3.55
396 397 1.466167 CAAATGAGCTCGGGTGAACAG 59.534 52.381 9.64 0.00 0.00 3.16
397 398 1.071542 TCAAATGAGCTCGGGTGAACA 59.928 47.619 9.64 0.00 0.00 3.18
398 399 1.734465 CTCAAATGAGCTCGGGTGAAC 59.266 52.381 9.64 0.00 35.13 3.18
399 400 2.099141 CTCAAATGAGCTCGGGTGAA 57.901 50.000 9.64 0.00 35.13 3.18
400 401 3.840831 CTCAAATGAGCTCGGGTGA 57.159 52.632 9.64 10.63 35.13 4.02
409 410 0.674581 TGCACCCGAGCTCAAATGAG 60.675 55.000 15.40 6.05 44.75 2.90
410 411 0.674581 CTGCACCCGAGCTCAAATGA 60.675 55.000 15.40 0.00 34.99 2.57
411 412 0.674581 TCTGCACCCGAGCTCAAATG 60.675 55.000 15.40 9.02 34.99 2.32
412 413 0.036732 TTCTGCACCCGAGCTCAAAT 59.963 50.000 15.40 0.00 34.99 2.32
413 414 0.179032 TTTCTGCACCCGAGCTCAAA 60.179 50.000 15.40 0.86 34.99 2.69
414 415 0.884704 GTTTCTGCACCCGAGCTCAA 60.885 55.000 15.40 0.00 34.99 3.02
415 416 1.301716 GTTTCTGCACCCGAGCTCA 60.302 57.895 15.40 0.00 34.99 4.26
416 417 1.004440 AGTTTCTGCACCCGAGCTC 60.004 57.895 2.73 2.73 34.99 4.09
417 418 1.004440 GAGTTTCTGCACCCGAGCT 60.004 57.895 0.00 0.00 34.99 4.09
418 419 2.035442 GGAGTTTCTGCACCCGAGC 61.035 63.158 0.00 0.00 0.00 5.03
419 420 1.738099 CGGAGTTTCTGCACCCGAG 60.738 63.158 0.00 0.00 42.49 4.63
420 421 2.342279 CGGAGTTTCTGCACCCGA 59.658 61.111 0.00 0.00 42.49 5.14
426 427 3.119096 GGGACGCGGAGTTTCTGC 61.119 66.667 12.47 0.00 45.04 4.26
439 440 0.822121 AAAGCCCTTCACAACGGGAC 60.822 55.000 0.00 0.00 43.44 4.46
443 444 2.731217 CAGAAAAAGCCCTTCACAACG 58.269 47.619 0.00 0.00 0.00 4.10
527 528 2.983402 CAATGTCTTGCCACTCACTG 57.017 50.000 0.00 0.00 0.00 3.66
537 540 2.029739 TGCCTCATGTTGCAATGTCTTG 60.030 45.455 0.59 0.00 33.87 3.02
538 541 2.241160 TGCCTCATGTTGCAATGTCTT 58.759 42.857 0.59 0.00 33.87 3.01
575 578 1.864565 GGCGTTTTCTGCAACCAAAT 58.135 45.000 0.00 0.00 0.00 2.32
577 580 1.064946 CGGCGTTTTCTGCAACCAA 59.935 52.632 0.00 0.00 0.00 3.67
788 791 8.463607 GTTTCAAAAACATATTTCCCTATCCGA 58.536 33.333 0.00 0.00 0.00 4.55
793 796 8.303876 GCTCAGTTTCAAAAACATATTTCCCTA 58.696 33.333 5.46 0.00 0.00 3.53
808 812 1.202245 GCAACAACCGCTCAGTTTCAA 60.202 47.619 0.00 0.00 0.00 2.69
809 813 0.380378 GCAACAACCGCTCAGTTTCA 59.620 50.000 0.00 0.00 0.00 2.69
850 855 0.108804 CAGATCTAACCACCACGCGT 60.109 55.000 5.58 5.58 0.00 6.01
892 897 4.221422 GCCGCATGGAGCTCCGTA 62.221 66.667 27.12 11.52 42.61 4.02
945 950 1.607801 GCCTTGTTCATTGGGAGCCC 61.608 60.000 0.00 0.00 0.00 5.19
969 974 6.708949 AGATGCCTTGTTCGTAGTTCTAAAAA 59.291 34.615 0.00 0.00 0.00 1.94
970 975 6.228258 AGATGCCTTGTTCGTAGTTCTAAAA 58.772 36.000 0.00 0.00 0.00 1.52
971 976 5.790593 AGATGCCTTGTTCGTAGTTCTAAA 58.209 37.500 0.00 0.00 0.00 1.85
972 977 5.401531 AGATGCCTTGTTCGTAGTTCTAA 57.598 39.130 0.00 0.00 0.00 2.10
973 978 5.168569 CAAGATGCCTTGTTCGTAGTTCTA 58.831 41.667 0.00 0.00 43.60 2.10
974 979 3.963428 AGATGCCTTGTTCGTAGTTCT 57.037 42.857 0.00 0.00 0.00 3.01
1063 1068 1.410517 GAGATCTTCCGGCATGTGAGA 59.589 52.381 0.00 0.00 0.00 3.27
1175 1192 2.012673 GGCTGTTTCTGATGCTTCGAT 58.987 47.619 0.00 0.00 0.00 3.59
1190 1207 2.171840 ACGACATCTTACTCTGGCTGT 58.828 47.619 0.00 0.00 0.00 4.40
1386 1403 3.883744 CTTGTTGCCGCCGTCCTCT 62.884 63.158 0.00 0.00 0.00 3.69
1487 1504 0.613260 TCCCCATTCCAACGACTGAG 59.387 55.000 0.00 0.00 0.00 3.35
1503 1520 1.681825 GTCAAACGCGTCATTTTCCC 58.318 50.000 14.44 0.00 0.00 3.97
1540 1557 1.378514 CCCCACCCCACTCAAATCG 60.379 63.158 0.00 0.00 0.00 3.34
1541 1558 1.000359 CCCCCACCCCACTCAAATC 60.000 63.158 0.00 0.00 0.00 2.17
1542 1559 1.467190 TCCCCCACCCCACTCAAAT 60.467 57.895 0.00 0.00 0.00 2.32
1543 1560 2.038221 TCCCCCACCCCACTCAAA 60.038 61.111 0.00 0.00 0.00 2.69
1544 1561 2.531685 CTCCCCCACCCCACTCAA 60.532 66.667 0.00 0.00 0.00 3.02
1545 1562 4.675303 CCTCCCCCACCCCACTCA 62.675 72.222 0.00 0.00 0.00 3.41
1576 1593 7.153985 TCAAATTCCCAAACAAGATAAGCAAG 58.846 34.615 0.00 0.00 0.00 4.01
1581 1598 6.928492 GCAACTCAAATTCCCAAACAAGATAA 59.072 34.615 0.00 0.00 0.00 1.75
1639 1903 9.280174 ACGAAAACTTAGAATCCAAGTCAATAA 57.720 29.630 0.00 0.00 35.19 1.40
1640 1904 8.842358 ACGAAAACTTAGAATCCAAGTCAATA 57.158 30.769 0.00 0.00 35.19 1.90
1641 1905 7.745620 ACGAAAACTTAGAATCCAAGTCAAT 57.254 32.000 0.00 0.00 35.19 2.57
1642 1906 8.145767 TCTACGAAAACTTAGAATCCAAGTCAA 58.854 33.333 0.00 0.00 35.19 3.18
1643 1907 7.663827 TCTACGAAAACTTAGAATCCAAGTCA 58.336 34.615 0.00 0.00 35.19 3.41
1644 1908 8.530269 TTCTACGAAAACTTAGAATCCAAGTC 57.470 34.615 0.00 0.00 35.19 3.01
1645 1909 8.897872 TTTCTACGAAAACTTAGAATCCAAGT 57.102 30.769 0.00 0.00 37.85 3.16
1648 1912 8.234546 GCATTTTCTACGAAAACTTAGAATCCA 58.765 33.333 4.11 0.00 0.00 3.41
1649 1913 7.696872 GGCATTTTCTACGAAAACTTAGAATCC 59.303 37.037 4.11 0.00 0.00 3.01
1650 1914 8.234546 TGGCATTTTCTACGAAAACTTAGAATC 58.765 33.333 4.11 0.00 0.00 2.52
1651 1915 8.021396 GTGGCATTTTCTACGAAAACTTAGAAT 58.979 33.333 4.11 0.00 0.00 2.40
1652 1916 7.012515 TGTGGCATTTTCTACGAAAACTTAGAA 59.987 33.333 4.11 0.00 0.00 2.10
1653 1917 6.483974 TGTGGCATTTTCTACGAAAACTTAGA 59.516 34.615 4.11 0.00 0.00 2.10
1654 1918 6.664515 TGTGGCATTTTCTACGAAAACTTAG 58.335 36.000 4.11 0.00 0.00 2.18
1655 1919 6.621316 TGTGGCATTTTCTACGAAAACTTA 57.379 33.333 4.11 0.00 0.00 2.24
1656 1920 5.508200 TGTGGCATTTTCTACGAAAACTT 57.492 34.783 4.11 0.00 0.00 2.66
1657 1921 5.508200 TTGTGGCATTTTCTACGAAAACT 57.492 34.783 4.11 0.00 0.00 2.66
1658 1922 6.419413 TGATTTGTGGCATTTTCTACGAAAAC 59.581 34.615 4.11 0.00 0.00 2.43
1659 1923 6.419413 GTGATTTGTGGCATTTTCTACGAAAA 59.581 34.615 4.47 4.47 0.00 2.29
1660 1924 5.918011 GTGATTTGTGGCATTTTCTACGAAA 59.082 36.000 0.00 0.00 0.00 3.46
1661 1925 5.457140 GTGATTTGTGGCATTTTCTACGAA 58.543 37.500 0.00 0.00 0.00 3.85
1662 1926 4.083003 GGTGATTTGTGGCATTTTCTACGA 60.083 41.667 0.00 0.00 0.00 3.43
1663 1927 4.165779 GGTGATTTGTGGCATTTTCTACG 58.834 43.478 0.00 0.00 0.00 3.51
1664 1928 5.132897 TGGTGATTTGTGGCATTTTCTAC 57.867 39.130 0.00 0.00 0.00 2.59
1665 1929 5.479724 TCATGGTGATTTGTGGCATTTTCTA 59.520 36.000 0.00 0.00 0.00 2.10
1666 1930 4.283978 TCATGGTGATTTGTGGCATTTTCT 59.716 37.500 0.00 0.00 0.00 2.52
1667 1931 4.567971 TCATGGTGATTTGTGGCATTTTC 58.432 39.130 0.00 0.00 0.00 2.29
1668 1932 4.620589 TCATGGTGATTTGTGGCATTTT 57.379 36.364 0.00 0.00 0.00 1.82
1669 1933 4.283978 TCTTCATGGTGATTTGTGGCATTT 59.716 37.500 0.00 0.00 0.00 2.32
1670 1934 3.833650 TCTTCATGGTGATTTGTGGCATT 59.166 39.130 0.00 0.00 0.00 3.56
1671 1935 3.433343 TCTTCATGGTGATTTGTGGCAT 58.567 40.909 0.00 0.00 0.00 4.40
1672 1936 2.874014 TCTTCATGGTGATTTGTGGCA 58.126 42.857 0.00 0.00 0.00 4.92
1685 1949 7.718314 TCATCAGTATTTCCTCCATTCTTCATG 59.282 37.037 0.00 0.00 0.00 3.07
1708 1972 0.544357 TCGTCTCACAACCCCCTCAT 60.544 55.000 0.00 0.00 0.00 2.90
1957 2221 6.507958 TGATATGATTCCTTTCGTGCAAAA 57.492 33.333 0.00 0.00 0.00 2.44
1958 2222 6.698008 ATGATATGATTCCTTTCGTGCAAA 57.302 33.333 0.00 0.00 0.00 3.68
1959 2223 7.041167 CCTTATGATATGATTCCTTTCGTGCAA 60.041 37.037 0.00 0.00 0.00 4.08
1960 2224 6.427853 CCTTATGATATGATTCCTTTCGTGCA 59.572 38.462 0.00 0.00 0.00 4.57
1961 2225 6.428159 ACCTTATGATATGATTCCTTTCGTGC 59.572 38.462 0.00 0.00 0.00 5.34
1962 2226 7.442364 ACACCTTATGATATGATTCCTTTCGTG 59.558 37.037 0.00 0.00 0.00 4.35
1963 2227 7.509546 ACACCTTATGATATGATTCCTTTCGT 58.490 34.615 0.00 0.00 0.00 3.85
1964 2228 7.969536 ACACCTTATGATATGATTCCTTTCG 57.030 36.000 0.00 0.00 0.00 3.46
1968 2232 8.766476 CCATCTACACCTTATGATATGATTCCT 58.234 37.037 0.00 0.00 0.00 3.36
1969 2233 8.543774 ACCATCTACACCTTATGATATGATTCC 58.456 37.037 0.00 0.00 0.00 3.01
1970 2234 9.950496 AACCATCTACACCTTATGATATGATTC 57.050 33.333 0.00 0.00 0.00 2.52
1993 2257 8.319881 AGTTTACAGAGGGAGTAGAATTTAACC 58.680 37.037 0.00 0.00 0.00 2.85
2131 2395 1.129251 CAACCAGTGTGCAAGCTATCG 59.871 52.381 0.00 0.00 0.00 2.92
2185 2449 0.686789 AAGCCAATTGGTCCAAAGCC 59.313 50.000 25.19 6.36 37.57 4.35
2314 2579 9.461312 TTTGTGCCTTGAGAAATATACAAGTAT 57.539 29.630 0.00 0.00 39.19 2.12
2426 2691 2.936032 AAGGAGAAAGGGCCGGCT 60.936 61.111 28.56 5.85 0.00 5.52
2429 2694 1.078143 CCAGAAGGAGAAAGGGCCG 60.078 63.158 0.00 0.00 36.89 6.13
2504 2770 1.129809 CCATTCAACACGACGACGC 59.870 57.895 7.30 0.00 43.96 5.19
2513 2779 1.108132 TGTGCTGCTGCCATTCAACA 61.108 50.000 13.47 6.60 38.71 3.33
2521 2787 0.521291 TTCGTTTATGTGCTGCTGCC 59.479 50.000 13.47 5.20 38.71 4.85
2565 2831 2.297033 GTCACGTACCCCTAAAGTCACA 59.703 50.000 0.00 0.00 0.00 3.58
2589 2866 3.624777 CATGGACTTGGAAACCTAGCAT 58.375 45.455 0.00 0.00 29.74 3.79
2932 3210 3.491342 TCTAGCATCTCTCACGCCTAAT 58.509 45.455 0.00 0.00 0.00 1.73
2933 3211 2.932261 TCTAGCATCTCTCACGCCTAA 58.068 47.619 0.00 0.00 0.00 2.69
2966 3244 4.271696 TCCCACCATTGATAGCGATTAG 57.728 45.455 0.00 0.00 0.00 1.73
2980 3258 1.003812 CCCTGACGTATTTTCCCACCA 59.996 52.381 0.00 0.00 0.00 4.17
3023 3301 9.307121 GAACAATCTAATATATGATCAGGGACG 57.693 37.037 0.09 0.00 0.00 4.79
3065 3343 5.790593 AGTCGGTGCTGATTAAGAAACTAA 58.209 37.500 0.00 0.00 0.00 2.24
3165 3547 1.937899 TGCATGCATCTCGTTCTGATG 59.062 47.619 18.46 0.00 42.86 3.07
3214 3596 9.601217 TCATAAAAAGTCTGCCTAATCTTCTAC 57.399 33.333 0.00 0.00 0.00 2.59
3299 3682 1.141449 CTCCTTGCTGCTCTCCGAG 59.859 63.158 0.00 0.00 0.00 4.63
3300 3683 1.304464 TCTCCTTGCTGCTCTCCGA 60.304 57.895 0.00 0.00 0.00 4.55
3301 3684 1.141449 CTCTCCTTGCTGCTCTCCG 59.859 63.158 0.00 0.00 0.00 4.63
3302 3685 0.461135 CTCTCTCCTTGCTGCTCTCC 59.539 60.000 0.00 0.00 0.00 3.71
3303 3686 0.461135 CCTCTCTCCTTGCTGCTCTC 59.539 60.000 0.00 0.00 0.00 3.20
3310 3693 1.148048 GCATCCCCTCTCTCCTTGC 59.852 63.158 0.00 0.00 0.00 4.01
3349 3732 1.268899 CCCGTACGATCCACCATAGTC 59.731 57.143 18.76 0.00 0.00 2.59
3350 3733 1.325355 CCCGTACGATCCACCATAGT 58.675 55.000 18.76 0.00 0.00 2.12
3351 3734 1.325355 ACCCGTACGATCCACCATAG 58.675 55.000 18.76 0.00 0.00 2.23
3416 3799 8.158025 TCTTATCCAAACTATTCTGGAGGAAA 57.842 34.615 0.00 0.00 44.82 3.13
3417 3800 7.749377 TCTTATCCAAACTATTCTGGAGGAA 57.251 36.000 0.00 0.00 44.82 3.36
3461 3844 0.433492 CGCCTGTACTTTCGACAACG 59.567 55.000 0.00 0.00 41.26 4.10
3465 3848 1.066136 GGAACGCCTGTACTTTCGAC 58.934 55.000 7.89 3.06 0.00 4.20
3536 3919 1.998315 CATCTCCAACTTCTCTGCGTG 59.002 52.381 0.00 0.00 0.00 5.34
3539 3922 2.008329 CTGCATCTCCAACTTCTCTGC 58.992 52.381 0.00 0.00 0.00 4.26
3675 4058 1.067821 CTGATGAGTACGAAGGGGCTC 59.932 57.143 0.00 0.00 0.00 4.70
3725 4108 5.389859 TTGCAAGTAAACAGCATGCTAAT 57.610 34.783 22.19 9.05 42.53 1.73
3746 4129 3.624777 AGTGTGGCATAGCATAGCTTTT 58.375 40.909 0.00 0.00 40.44 2.27
3747 4130 3.287867 AGTGTGGCATAGCATAGCTTT 57.712 42.857 0.00 0.00 40.44 3.51
3748 4131 4.630644 ATAGTGTGGCATAGCATAGCTT 57.369 40.909 0.00 0.00 40.44 3.74
3754 4137 5.009631 AGAACAAAATAGTGTGGCATAGCA 58.990 37.500 0.00 0.00 0.00 3.49
3756 4139 6.500684 ACAGAACAAAATAGTGTGGCATAG 57.499 37.500 0.00 0.00 0.00 2.23
3772 4155 7.333174 TGAATTTGTCATTATCGCTACAGAACA 59.667 33.333 0.00 0.00 0.00 3.18
3901 4284 6.821665 TCATGAGGCCATACTAACAGTTTAAC 59.178 38.462 5.01 0.00 0.00 2.01
3915 4298 3.640029 GACCAAATGAATCATGAGGCCAT 59.360 43.478 5.01 1.60 0.00 4.40
3924 4307 5.595542 GGATCATGAAGGACCAAATGAATCA 59.404 40.000 0.00 0.00 33.06 2.57
4013 4413 5.598005 CCTGCCAGGAACAATTGGATTTATA 59.402 40.000 4.15 0.00 37.67 0.98
4250 4650 0.321122 GTGAGCAAGGACACCCTGAG 60.321 60.000 0.00 0.00 43.48 3.35
4256 4656 0.890996 CAAGGGGTGAGCAAGGACAC 60.891 60.000 0.00 0.00 36.44 3.67
4273 4673 2.200092 GGTGTTCCAAGGGGCCAA 59.800 61.111 4.39 0.00 0.00 4.52
4274 4674 3.909651 GGGTGTTCCAAGGGGCCA 61.910 66.667 4.39 0.00 35.00 5.36
4275 4675 3.590574 AGGGTGTTCCAAGGGGCC 61.591 66.667 0.00 0.00 38.24 5.80
4276 4676 2.283173 CAGGGTGTTCCAAGGGGC 60.283 66.667 0.00 0.00 38.24 5.80
4277 4677 2.283173 GCAGGGTGTTCCAAGGGG 60.283 66.667 0.00 0.00 38.24 4.79
4278 4678 1.604593 CAGCAGGGTGTTCCAAGGG 60.605 63.158 0.00 0.00 38.24 3.95
4279 4679 0.468029 AACAGCAGGGTGTTCCAAGG 60.468 55.000 10.79 0.00 35.71 3.61
4280 4680 3.116091 AACAGCAGGGTGTTCCAAG 57.884 52.632 10.79 0.00 35.71 3.61
4300 4700 0.034756 TGGTCCATCTGGTGTGAACG 59.965 55.000 0.00 0.00 36.34 3.95
4323 4723 4.582869 TCAACTTCATGGTCATCCTGAAG 58.417 43.478 16.74 16.74 44.61 3.02
4539 4939 8.470805 CAACTAAGAGTTAGTCCACATGATAGT 58.529 37.037 0.00 0.00 45.33 2.12
4540 4940 7.923344 CCAACTAAGAGTTAGTCCACATGATAG 59.077 40.741 0.00 0.00 45.33 2.08
4827 5868 7.488150 GGTAAAATAATTAGCAGGCAGTGTTTC 59.512 37.037 0.00 0.00 0.00 2.78
4921 5962 5.529430 TGAACAAAGAAAATGCTCCGTAAGA 59.471 36.000 0.00 0.00 43.02 2.10
5008 6049 6.929606 GTGGTTACTTTGACTCTAATGTGTCT 59.070 38.462 0.00 0.00 37.52 3.41
5194 6235 4.551671 TGCTCTATCTTAGCCTCTTCCTT 58.448 43.478 0.00 0.00 39.30 3.36
5421 6462 6.767524 TTCCTGAAACAAAAGCTACAGAAA 57.232 33.333 0.00 0.00 0.00 2.52
5588 6629 7.713764 ATAAAAACAACTGTGCATCCTTTTC 57.286 32.000 0.00 0.00 0.00 2.29
5592 6633 9.777297 AATTAAATAAAAACAACTGTGCATCCT 57.223 25.926 0.00 0.00 0.00 3.24
5653 6694 0.907486 CTGCCATGACAAGGAGAGGA 59.093 55.000 0.00 0.00 0.00 3.71
5726 6767 4.846779 TTTTGCCCTTATGTGACTTGAC 57.153 40.909 0.00 0.00 0.00 3.18
5771 6814 8.800972 CATGAAGGAAATGACATTTAACATTCG 58.199 33.333 13.34 1.83 35.99 3.34
5929 7079 3.810941 CAGTTCTAACGTAACTTTGGGCA 59.189 43.478 0.00 0.00 34.99 5.36
5941 7091 7.540299 AGAAAAGGAGTATCTCAGTTCTAACG 58.460 38.462 0.00 0.00 30.36 3.18
5990 7141 6.014755 TCCATTGTTTTGCAAGGACATCAATA 60.015 34.615 15.64 4.39 40.96 1.90
6061 7213 4.141158 AGTGTTCTGAGAAAAAGGGGTCAT 60.141 41.667 0.00 0.00 0.00 3.06
6327 7479 4.668636 ACAAATATTTTGGAACGGAGGGA 58.331 39.130 0.00 0.00 0.00 4.20
6328 7480 4.705023 AGACAAATATTTTGGAACGGAGGG 59.295 41.667 0.00 0.00 0.00 4.30
6329 7481 5.897377 AGACAAATATTTTGGAACGGAGG 57.103 39.130 0.00 0.00 0.00 4.30
6330 7482 7.593825 AGAAAGACAAATATTTTGGAACGGAG 58.406 34.615 0.00 0.00 0.00 4.63
6331 7483 7.519032 AGAAAGACAAATATTTTGGAACGGA 57.481 32.000 0.00 0.00 0.00 4.69
6332 7484 9.685828 TTTAGAAAGACAAATATTTTGGAACGG 57.314 29.630 0.00 0.00 0.00 4.44
6346 7498 9.787532 CACTTGTTGAAATCTTTAGAAAGACAA 57.212 29.630 6.85 4.98 46.80 3.18
6347 7499 9.173021 TCACTTGTTGAAATCTTTAGAAAGACA 57.827 29.630 6.85 0.00 46.80 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.