Multiple sequence alignment - TraesCS2D01G220500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G220500 chr2D 100.000 2721 0 0 1 2721 187970805 187968085 0.000000e+00 5025.0
1 TraesCS2D01G220500 chr2D 90.529 718 42 9 2024 2716 2488319 2489035 0.000000e+00 926.0
2 TraesCS2D01G220500 chr2D 83.607 305 41 7 26 322 148920760 148921063 7.420000e-71 278.0
3 TraesCS2D01G220500 chr2D 82.623 305 42 8 26 322 318213994 318213693 2.690000e-65 259.0
4 TraesCS2D01G220500 chr2D 87.692 195 24 0 1001 1195 187648546 187648352 7.580000e-56 228.0
5 TraesCS2D01G220500 chr2D 100.000 33 0 0 1 33 133652409 133652377 8.140000e-06 62.1
6 TraesCS2D01G220500 chr2A 96.159 1562 48 7 474 2029 200920676 200919121 0.000000e+00 2542.0
7 TraesCS2D01G220500 chr2A 89.956 458 25 5 26 481 200921501 200921063 3.040000e-159 571.0
8 TraesCS2D01G220500 chr2A 82.623 305 45 6 26 322 414173014 414173318 2.080000e-66 263.0
9 TraesCS2D01G220500 chr2A 88.205 195 23 0 1001 1195 200627162 200626968 1.630000e-57 233.0
10 TraesCS2D01G220500 chr2B 94.708 1474 56 11 567 2027 243831206 243829742 0.000000e+00 2270.0
11 TraesCS2D01G220500 chr2B 88.889 720 51 14 2030 2721 247939293 247938575 0.000000e+00 859.0
12 TraesCS2D01G220500 chr2B 83.660 306 39 9 26 322 208268685 208268988 7.420000e-71 278.0
13 TraesCS2D01G220500 chr2B 86.154 195 27 0 1001 1195 243790829 243790635 7.630000e-51 211.0
14 TraesCS2D01G220500 chr1D 91.036 714 41 9 2030 2721 234835024 234834312 0.000000e+00 942.0
15 TraesCS2D01G220500 chr1D 84.914 232 21 6 2030 2252 453205567 453205341 3.530000e-54 222.0
16 TraesCS2D01G220500 chr1D 83.333 234 24 7 2030 2252 393337762 393337991 4.590000e-48 202.0
17 TraesCS2D01G220500 chr5D 90.922 716 41 7 2030 2721 91635856 91635141 0.000000e+00 941.0
18 TraesCS2D01G220500 chr5D 84.429 289 40 5 26 309 154040109 154039821 2.060000e-71 279.0
19 TraesCS2D01G220500 chr4B 88.611 720 53 13 2030 2721 613203275 613203993 0.000000e+00 848.0
20 TraesCS2D01G220500 chr4B 82.935 293 44 6 22 309 306973857 306973566 2.690000e-65 259.0
21 TraesCS2D01G220500 chr4B 89.313 131 14 0 1061 1191 41743730 41743860 6.030000e-37 165.0
22 TraesCS2D01G220500 chr4B 97.059 34 0 1 1 34 185971629 185971661 3.780000e-04 56.5
23 TraesCS2D01G220500 chr7D 88.227 722 49 18 2030 2721 408032975 408032260 0.000000e+00 830.0
24 TraesCS2D01G220500 chr7D 84.118 170 22 4 1061 1226 598485580 598485412 2.800000e-35 159.0
25 TraesCS2D01G220500 chr6A 88.194 720 53 18 2032 2721 420380174 420379457 0.000000e+00 830.0
26 TraesCS2D01G220500 chr4A 86.415 714 70 16 2030 2721 97527308 97526600 0.000000e+00 756.0
27 TraesCS2D01G220500 chr4A 86.139 202 19 5 2030 2222 631987758 631987959 2.750000e-50 209.0
28 TraesCS2D01G220500 chr1B 84.463 708 83 14 2030 2716 636306751 636306050 0.000000e+00 673.0
29 TraesCS2D01G220500 chr1B 82.707 266 39 6 991 1253 169641180 169640919 2.110000e-56 230.0
30 TraesCS2D01G220500 chr1B 84.672 137 15 4 1426 1556 169640873 169640737 6.110000e-27 132.0
31 TraesCS2D01G220500 chr1A 84.365 307 35 11 26 322 169836061 169835758 3.430000e-74 289.0
32 TraesCS2D01G220500 chr3A 82.680 306 42 9 26 322 662177706 662178009 7.470000e-66 261.0
33 TraesCS2D01G220500 chr3A 95.000 40 1 1 1 39 675872293 675872332 8.140000e-06 62.1
34 TraesCS2D01G220500 chr3A 100.000 32 0 0 1 32 124528245 124528276 2.930000e-05 60.2
35 TraesCS2D01G220500 chr6D 81.646 316 36 9 2029 2327 134686802 134686492 2.710000e-60 243.0
36 TraesCS2D01G220500 chr6D 96.970 33 1 0 1 33 449665680 449665648 3.780000e-04 56.5
37 TraesCS2D01G220500 chr6B 83.396 265 39 4 991 1253 256480083 256479822 9.740000e-60 241.0
38 TraesCS2D01G220500 chr6B 84.672 137 15 4 1426 1556 256479776 256479640 6.110000e-27 132.0
39 TraesCS2D01G220500 chr6B 96.970 33 1 0 1 33 162393556 162393524 3.780000e-04 56.5
40 TraesCS2D01G220500 chrUn 88.732 142 16 0 982 1123 227959744 227959885 1.000000e-39 174.0
41 TraesCS2D01G220500 chr5A 81.481 216 27 10 2029 2234 578835438 578835226 6.030000e-37 165.0
42 TraesCS2D01G220500 chr5A 96.970 33 1 0 1 33 101349082 101349050 3.780000e-04 56.5
43 TraesCS2D01G220500 chr5A 96.970 33 1 0 1 33 412845577 412845609 3.780000e-04 56.5
44 TraesCS2D01G220500 chr7B 83.893 149 22 1 975 1123 146004976 146005122 1.020000e-29 141.0
45 TraesCS2D01G220500 chr7B 80.147 136 23 3 1171 1304 146005140 146005273 6.200000e-17 99.0
46 TraesCS2D01G220500 chr3D 96.970 33 1 0 1 33 595530374 595530342 3.780000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G220500 chr2D 187968085 187970805 2720 True 5025.0 5025 100.0000 1 2721 1 chr2D.!!$R3 2720
1 TraesCS2D01G220500 chr2D 2488319 2489035 716 False 926.0 926 90.5290 2024 2716 1 chr2D.!!$F1 692
2 TraesCS2D01G220500 chr2A 200919121 200921501 2380 True 1556.5 2542 93.0575 26 2029 2 chr2A.!!$R2 2003
3 TraesCS2D01G220500 chr2B 243829742 243831206 1464 True 2270.0 2270 94.7080 567 2027 1 chr2B.!!$R2 1460
4 TraesCS2D01G220500 chr2B 247938575 247939293 718 True 859.0 859 88.8890 2030 2721 1 chr2B.!!$R3 691
5 TraesCS2D01G220500 chr1D 234834312 234835024 712 True 942.0 942 91.0360 2030 2721 1 chr1D.!!$R1 691
6 TraesCS2D01G220500 chr5D 91635141 91635856 715 True 941.0 941 90.9220 2030 2721 1 chr5D.!!$R1 691
7 TraesCS2D01G220500 chr4B 613203275 613203993 718 False 848.0 848 88.6110 2030 2721 1 chr4B.!!$F3 691
8 TraesCS2D01G220500 chr7D 408032260 408032975 715 True 830.0 830 88.2270 2030 2721 1 chr7D.!!$R1 691
9 TraesCS2D01G220500 chr6A 420379457 420380174 717 True 830.0 830 88.1940 2032 2721 1 chr6A.!!$R1 689
10 TraesCS2D01G220500 chr4A 97526600 97527308 708 True 756.0 756 86.4150 2030 2721 1 chr4A.!!$R1 691
11 TraesCS2D01G220500 chr1B 636306050 636306751 701 True 673.0 673 84.4630 2030 2716 1 chr1B.!!$R1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.315251 GTTTCAAGCTTGTGGGAGGC 59.685 55.000 25.19 7.14 0.0 4.70 F
377 379 2.678190 GCTGGACTTGTAGTAGCCCTTG 60.678 54.545 0.00 0.00 0.0 3.61 F
1309 1707 1.612950 TCTGTTTAGAACCGTGCCGTA 59.387 47.619 0.00 0.00 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1202 1600 1.138568 CAGGGGCAAGGATGAGATCT 58.861 55.000 0.0 0.0 0.00 2.75 R
1374 1773 1.449423 CACATCGATTCCGCACCCA 60.449 57.895 0.0 0.0 35.37 4.51 R
2439 2877 1.305046 GGAGTGACGGGAGGGAGAA 60.305 63.158 0.0 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.414272 GCACGGGCATCTTGCTAG 58.586 61.111 3.77 0.00 44.28 3.42
33 34 5.245301 ACGGGCATCTTGCTAGTATGTATAA 59.755 40.000 0.00 0.00 44.28 0.98
45 46 7.996066 TGCTAGTATGTATAATTTTTGGCCTCA 59.004 33.333 3.32 0.00 0.00 3.86
52 53 8.359875 TGTATAATTTTTGGCCTCATGAAGAA 57.640 30.769 3.32 0.00 0.00 2.52
79 80 0.315251 GTTTCAAGCTTGTGGGAGGC 59.685 55.000 25.19 7.14 0.00 4.70
90 91 3.627395 TGTGGGAGGCTTAAGTACATG 57.373 47.619 4.02 0.00 0.00 3.21
111 112 6.550481 ACATGATGTACAAATGCCCAATCATA 59.450 34.615 17.45 0.00 0.00 2.15
185 186 4.347360 TGATCGATCCATGCTTGATTCT 57.653 40.909 22.31 0.00 0.00 2.40
194 195 8.344831 CGATCCATGCTTGATTCTTTTTATACA 58.655 33.333 0.22 0.00 0.00 2.29
325 327 9.268268 ACTTGAGTTTCGTGTTAAATCTTCATA 57.732 29.630 0.00 0.00 0.00 2.15
326 328 9.530129 CTTGAGTTTCGTGTTAAATCTTCATAC 57.470 33.333 0.00 0.00 0.00 2.39
327 329 8.827177 TGAGTTTCGTGTTAAATCTTCATACT 57.173 30.769 0.00 0.00 0.00 2.12
328 330 9.268268 TGAGTTTCGTGTTAAATCTTCATACTT 57.732 29.630 0.00 0.00 0.00 2.24
329 331 9.742552 GAGTTTCGTGTTAAATCTTCATACTTC 57.257 33.333 0.00 0.00 0.00 3.01
330 332 9.490379 AGTTTCGTGTTAAATCTTCATACTTCT 57.510 29.630 0.00 0.00 0.00 2.85
334 336 9.784680 TCGTGTTAAATCTTCATACTTCTACTC 57.215 33.333 0.00 0.00 0.00 2.59
335 337 9.021863 CGTGTTAAATCTTCATACTTCTACTCC 57.978 37.037 0.00 0.00 0.00 3.85
336 338 9.871238 GTGTTAAATCTTCATACTTCTACTCCA 57.129 33.333 0.00 0.00 0.00 3.86
360 362 7.010738 CCATAGCATTTTGTTTGAATAAGCTGG 59.989 37.037 0.00 0.00 0.00 4.85
377 379 2.678190 GCTGGACTTGTAGTAGCCCTTG 60.678 54.545 0.00 0.00 0.00 3.61
424 426 7.061094 GCAATTTAAAGATGTCGAGGTTTTGAG 59.939 37.037 0.00 0.00 0.00 3.02
428 430 4.086706 AGATGTCGAGGTTTTGAGGTTT 57.913 40.909 0.00 0.00 0.00 3.27
435 437 4.036262 TCGAGGTTTTGAGGTTTCATTGTG 59.964 41.667 0.00 0.00 32.27 3.33
444 446 6.839124 TGAGGTTTCATTGTGCATTATCTT 57.161 33.333 0.00 0.00 0.00 2.40
446 448 6.433716 TGAGGTTTCATTGTGCATTATCTTGA 59.566 34.615 0.00 0.00 0.00 3.02
505 901 4.842574 ACACAGACATATGCATGTGGTTA 58.157 39.130 29.79 0.00 45.58 2.85
516 912 5.176407 TGCATGTGGTTACAAAAGTACAC 57.824 39.130 0.00 0.00 40.84 2.90
523 919 6.127111 TGTGGTTACAAAAGTACACACTCCTA 60.127 38.462 0.00 0.00 34.31 2.94
1259 1657 2.125832 TTGATCCGGTTCCGTCGC 60.126 61.111 10.02 0.00 0.00 5.19
1309 1707 1.612950 TCTGTTTAGAACCGTGCCGTA 59.387 47.619 0.00 0.00 0.00 4.02
1334 1732 3.609103 AATAGCAATGCGTCGAAATCC 57.391 42.857 0.00 0.00 0.00 3.01
1339 1737 2.095213 GCAATGCGTCGAAATCCAAGTA 59.905 45.455 0.00 0.00 0.00 2.24
1374 1773 7.447238 TCCAAATTCGTCAAGATAAGGTTTCTT 59.553 33.333 0.00 0.00 37.03 2.52
1773 2182 7.597743 TCTTGTTTCGTAGGATTTAGTGTCTTC 59.402 37.037 0.00 0.00 0.00 2.87
1914 2323 5.129320 TCAGATGTAAGGCTGCTTGATCTTA 59.871 40.000 0.00 0.00 32.27 2.10
1993 2402 6.575162 ATTTTGTCGCTCCTTGTTCTAATT 57.425 33.333 0.00 0.00 0.00 1.40
2037 2446 6.213600 GCCTGAAGGATCCATAGGAGTATTTA 59.786 42.308 24.95 2.04 37.39 1.40
2039 2448 8.830741 CCTGAAGGATCCATAGGAGTATTTAAT 58.169 37.037 15.82 0.00 34.05 1.40
2069 2480 6.203072 ACTATCACATTAGGGGTTACTGTCT 58.797 40.000 0.00 0.00 0.00 3.41
2072 2483 5.030147 TCACATTAGGGGTTACTGTCTCAT 58.970 41.667 0.00 0.00 0.00 2.90
2184 2606 9.678941 TTATTTAAACACGTTTATGACATGCAA 57.321 25.926 3.35 0.00 35.27 4.08
2196 2618 0.114954 ACATGCAAGACCCACCCATT 59.885 50.000 0.00 0.00 0.00 3.16
2257 2687 5.603596 ACGTTGACTGTTATTACAAGTGGA 58.396 37.500 0.00 0.00 32.92 4.02
2285 2721 3.450457 CCTGTTAGCATCACTCTTCCTCT 59.550 47.826 0.00 0.00 0.00 3.69
2287 2723 4.825422 TGTTAGCATCACTCTTCCTCTTG 58.175 43.478 0.00 0.00 0.00 3.02
2302 2738 3.260380 TCCTCTTGCTCCTTTCTCTCTTG 59.740 47.826 0.00 0.00 0.00 3.02
2305 2741 3.389329 TCTTGCTCCTTTCTCTCTTGTGT 59.611 43.478 0.00 0.00 0.00 3.72
2331 2769 1.392589 CTCAAACACCTTGTGCACCT 58.607 50.000 15.69 0.00 36.98 4.00
2346 2784 1.381872 ACCTGCGAGCTACCTCCAT 60.382 57.895 0.00 0.00 34.49 3.41
2353 2791 1.404843 GAGCTACCTCCATCGTCCTT 58.595 55.000 0.00 0.00 31.68 3.36
2363 2801 2.283529 ATCGTCCTTCACTGCCGGT 61.284 57.895 1.90 0.00 0.00 5.28
2409 2847 0.178891 TGTCTGGAAAGGGAGAGCCT 60.179 55.000 0.00 0.00 0.00 4.58
2439 2877 4.003788 CACTCCGGCGACCACCTT 62.004 66.667 9.30 0.00 0.00 3.50
2448 2886 1.597461 CGACCACCTTTCTCCCTCC 59.403 63.158 0.00 0.00 0.00 4.30
2531 2970 3.629142 AGCTAATACTCGCCTTGGTTT 57.371 42.857 0.00 0.00 0.00 3.27
2637 3082 3.345808 GCTGCCAAACTCGTGCGA 61.346 61.111 0.00 0.00 0.00 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.179084 TACTAGCAAGATGCCCGTGC 60.179 55.000 6.11 6.11 46.52 5.34
8 9 2.138320 CATACTAGCAAGATGCCCGTG 58.862 52.381 0.00 0.00 46.52 4.94
9 10 1.762957 ACATACTAGCAAGATGCCCGT 59.237 47.619 0.00 0.00 46.52 5.28
10 11 2.533266 ACATACTAGCAAGATGCCCG 57.467 50.000 0.00 0.00 46.52 6.13
11 12 8.567285 AAATTATACATACTAGCAAGATGCCC 57.433 34.615 0.00 0.00 46.52 5.36
16 17 8.846211 GGCCAAAAATTATACATACTAGCAAGA 58.154 33.333 0.00 0.00 0.00 3.02
17 18 8.850156 AGGCCAAAAATTATACATACTAGCAAG 58.150 33.333 5.01 0.00 0.00 4.01
18 19 8.760980 AGGCCAAAAATTATACATACTAGCAA 57.239 30.769 5.01 0.00 0.00 3.91
19 20 7.996066 TGAGGCCAAAAATTATACATACTAGCA 59.004 33.333 5.01 0.00 0.00 3.49
20 21 8.391075 TGAGGCCAAAAATTATACATACTAGC 57.609 34.615 5.01 0.00 0.00 3.42
23 24 8.995027 TCATGAGGCCAAAAATTATACATACT 57.005 30.769 5.01 0.00 0.00 2.12
24 25 9.683069 CTTCATGAGGCCAAAAATTATACATAC 57.317 33.333 5.01 0.00 0.00 2.39
52 53 6.825610 TCCCACAAGCTTGAAACATATTTTT 58.174 32.000 32.50 2.52 0.00 1.94
56 57 4.019174 CCTCCCACAAGCTTGAAACATAT 58.981 43.478 32.50 5.49 0.00 1.78
60 61 0.315251 GCCTCCCACAAGCTTGAAAC 59.685 55.000 32.50 10.43 0.00 2.78
61 62 0.185901 AGCCTCCCACAAGCTTGAAA 59.814 50.000 32.50 12.98 31.27 2.69
64 65 1.815003 CTTAAGCCTCCCACAAGCTTG 59.185 52.381 24.84 24.84 45.96 4.01
68 69 3.695830 TGTACTTAAGCCTCCCACAAG 57.304 47.619 1.29 0.00 0.00 3.16
71 72 3.906720 TCATGTACTTAAGCCTCCCAC 57.093 47.619 1.29 0.00 0.00 4.61
90 91 5.922544 GCTTATGATTGGGCATTTGTACATC 59.077 40.000 0.00 0.00 0.00 3.06
309 311 9.021863 GGAGTAGAAGTATGAAGATTTAACACG 57.978 37.037 0.00 0.00 0.00 4.49
325 327 7.665559 TCAAACAAAATGCTATGGAGTAGAAGT 59.334 33.333 0.00 0.00 31.71 3.01
326 328 8.044060 TCAAACAAAATGCTATGGAGTAGAAG 57.956 34.615 0.00 0.00 31.71 2.85
327 329 7.994425 TCAAACAAAATGCTATGGAGTAGAA 57.006 32.000 0.00 0.00 31.71 2.10
328 330 7.994425 TTCAAACAAAATGCTATGGAGTAGA 57.006 32.000 0.00 0.00 31.71 2.59
331 333 7.761249 GCTTATTCAAACAAAATGCTATGGAGT 59.239 33.333 0.00 0.00 0.00 3.85
332 334 7.977853 AGCTTATTCAAACAAAATGCTATGGAG 59.022 33.333 0.00 0.00 0.00 3.86
333 335 7.760794 CAGCTTATTCAAACAAAATGCTATGGA 59.239 33.333 0.00 0.00 0.00 3.41
334 336 7.010738 CCAGCTTATTCAAACAAAATGCTATGG 59.989 37.037 0.00 0.00 0.00 2.74
335 337 7.760794 TCCAGCTTATTCAAACAAAATGCTATG 59.239 33.333 0.00 0.00 0.00 2.23
336 338 7.761249 GTCCAGCTTATTCAAACAAAATGCTAT 59.239 33.333 0.00 0.00 0.00 2.97
337 339 7.039784 AGTCCAGCTTATTCAAACAAAATGCTA 60.040 33.333 0.00 0.00 0.00 3.49
338 340 5.928264 GTCCAGCTTATTCAAACAAAATGCT 59.072 36.000 0.00 0.00 0.00 3.79
339 341 5.928264 AGTCCAGCTTATTCAAACAAAATGC 59.072 36.000 0.00 0.00 0.00 3.56
340 342 7.439056 ACAAGTCCAGCTTATTCAAACAAAATG 59.561 33.333 0.00 0.00 35.27 2.32
360 362 1.407025 GGGCAAGGGCTACTACAAGTC 60.407 57.143 0.00 0.00 40.87 3.01
377 379 1.401905 CGAGGTTTCATTAAGCAGGGC 59.598 52.381 0.00 0.00 36.70 5.19
424 426 7.887996 TTTCAAGATAATGCACAATGAAACC 57.112 32.000 0.00 0.00 32.26 3.27
505 901 4.652421 TGGAGTAGGAGTGTGTACTTTTGT 59.348 41.667 0.00 0.00 37.25 2.83
971 1369 2.039137 AGGAGGAGGGGAACGACC 59.961 66.667 0.00 0.00 38.08 4.79
980 1378 1.954362 CTCAGCAACCGAGGAGGAGG 61.954 65.000 0.00 0.00 45.00 4.30
981 1379 0.967887 TCTCAGCAACCGAGGAGGAG 60.968 60.000 0.00 0.00 45.00 3.69
982 1380 0.324738 ATCTCAGCAACCGAGGAGGA 60.325 55.000 0.00 0.00 45.00 3.71
1202 1600 1.138568 CAGGGGCAAGGATGAGATCT 58.861 55.000 0.00 0.00 0.00 2.75
1309 1707 5.478233 TTTCGACGCATTGCTATTAACAT 57.522 34.783 7.12 0.00 0.00 2.71
1374 1773 1.449423 CACATCGATTCCGCACCCA 60.449 57.895 0.00 0.00 35.37 4.51
1716 2115 6.867816 GTCTTTGTGATGCAAATGTATTCCAA 59.132 34.615 0.00 0.00 45.00 3.53
1721 2120 5.412594 ACTCGTCTTTGTGATGCAAATGTAT 59.587 36.000 0.00 0.00 45.00 2.29
1790 2199 3.664320 TCTCCTAATACCAAGCCATCCA 58.336 45.455 0.00 0.00 0.00 3.41
1914 2323 2.041081 TCTTCAACCATGGAAACCGGAT 59.959 45.455 21.47 0.00 0.00 4.18
1993 2402 5.594725 TCAGGCAAAACAAATAACAGGTACA 59.405 36.000 0.00 0.00 0.00 2.90
2065 2476 9.996554 TTTTGAAAGTGATAGTTCTATGAGACA 57.003 29.630 0.00 0.00 0.00 3.41
2156 2572 9.119329 GCATGTCATAAACGTGTTTAAATAACA 57.881 29.630 9.06 10.54 45.19 2.41
2196 2618 1.496444 TTGCCACCACATCAGCCCTA 61.496 55.000 0.00 0.00 0.00 3.53
2205 2627 3.894427 ACATAATTGACTTTGCCACCACA 59.106 39.130 0.00 0.00 0.00 4.17
2257 2687 1.705186 AGTGATGCTAACAGGTGGGTT 59.295 47.619 0.00 0.00 34.81 4.11
2268 2698 3.102972 AGCAAGAGGAAGAGTGATGCTA 58.897 45.455 0.00 0.00 40.56 3.49
2285 2721 3.134623 TGACACAAGAGAGAAAGGAGCAA 59.865 43.478 0.00 0.00 0.00 3.91
2287 2723 3.393089 TGACACAAGAGAGAAAGGAGC 57.607 47.619 0.00 0.00 0.00 4.70
2302 2738 4.097892 ACAAGGTGTTTGAGGAAATGACAC 59.902 41.667 0.00 0.00 39.21 3.67
2305 2741 3.068024 GCACAAGGTGTTTGAGGAAATGA 59.932 43.478 0.00 0.00 39.21 2.57
2331 2769 1.725557 GACGATGGAGGTAGCTCGCA 61.726 60.000 15.43 14.18 34.60 5.10
2346 2784 2.915659 ACCGGCAGTGAAGGACGA 60.916 61.111 0.00 0.00 39.75 4.20
2363 2801 1.620739 GGCATGAGGAGAGGTGAGCA 61.621 60.000 0.00 0.00 0.00 4.26
2409 2847 2.431683 GAGTGGTTGGGCAGCTCA 59.568 61.111 0.00 0.00 0.00 4.26
2439 2877 1.305046 GGAGTGACGGGAGGGAGAA 60.305 63.158 0.00 0.00 0.00 2.87
2622 3067 1.954146 GAGTCGCACGAGTTTGGCA 60.954 57.895 1.37 0.00 0.00 4.92
2637 3082 1.747367 CTCCAGCTCCTCGACGAGT 60.747 63.158 22.61 1.87 32.11 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.