Multiple sequence alignment - TraesCS2D01G220300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G220300 chr2D 100.000 6877 0 0 1 6877 187640696 187647572 0.000000e+00 12700.0
1 TraesCS2D01G220300 chr2D 94.271 192 11 0 1 192 533191307 533191116 1.880000e-75 294.0
2 TraesCS2D01G220300 chr2D 82.403 233 41 0 2898 3130 187643545 187643777 3.250000e-48 204.0
3 TraesCS2D01G220300 chr2D 82.403 233 41 0 2850 3082 187643593 187643825 3.250000e-48 204.0
4 TraesCS2D01G220300 chr2D 85.393 178 20 6 1809 1983 256671513 256671687 5.480000e-41 180.0
5 TraesCS2D01G220300 chr2A 97.425 3107 46 7 1719 4807 200620657 200623747 0.000000e+00 5264.0
6 TraesCS2D01G220300 chr2A 94.961 1151 32 9 192 1322 200619029 200620173 0.000000e+00 1781.0
7 TraesCS2D01G220300 chr2A 97.409 965 25 0 4806 5770 200624080 200625044 0.000000e+00 1644.0
8 TraesCS2D01G220300 chr2A 89.536 1099 57 23 5772 6819 200625007 200626098 0.000000e+00 1339.0
9 TraesCS2D01G220300 chr2A 96.305 406 12 1 1322 1724 200620203 200620608 0.000000e+00 664.0
10 TraesCS2D01G220300 chr2A 83.262 233 39 0 2898 3130 200621801 200622033 1.500000e-51 215.0
11 TraesCS2D01G220300 chr2A 82.222 225 40 0 2845 3069 200621844 200622068 1.960000e-45 195.0
12 TraesCS2D01G220300 chr2B 97.943 2090 41 2 3682 5770 243786793 243788881 0.000000e+00 3620.0
13 TraesCS2D01G220300 chr2B 94.146 1862 78 6 1829 3671 243784666 243786515 0.000000e+00 2806.0
14 TraesCS2D01G220300 chr2B 90.562 943 60 9 358 1294 243783150 243784069 0.000000e+00 1221.0
15 TraesCS2D01G220300 chr2B 89.174 702 58 11 5772 6465 243788844 243789535 0.000000e+00 859.0
16 TraesCS2D01G220300 chr2B 88.372 387 16 6 1344 1724 243784069 243784432 8.190000e-119 438.0
17 TraesCS2D01G220300 chr2B 83.262 233 39 0 2898 3130 243785706 243785938 1.500000e-51 215.0
18 TraesCS2D01G220300 chr2B 81.513 238 42 2 2846 3082 243785750 243785986 1.960000e-45 195.0
19 TraesCS2D01G220300 chr2B 89.677 155 13 3 1830 1983 288939780 288939932 1.960000e-45 195.0
20 TraesCS2D01G220300 chr2B 83.478 115 5 2 1719 1830 243784484 243784587 2.040000e-15 95.3
21 TraesCS2D01G220300 chr6A 94.792 192 10 0 1 192 548586621 548586812 4.030000e-77 300.0
22 TraesCS2D01G220300 chr6A 90.972 144 13 0 1832 1975 538097690 538097833 1.960000e-45 195.0
23 TraesCS2D01G220300 chr4D 94.792 192 10 0 1 192 396258299 396258490 4.030000e-77 300.0
24 TraesCS2D01G220300 chr4D 93.750 192 12 0 1 192 378113399 378113590 8.730000e-74 289.0
25 TraesCS2D01G220300 chrUn 94.271 192 11 0 1 192 110501995 110501804 1.880000e-75 294.0
26 TraesCS2D01G220300 chrUn 93.750 192 12 0 1 192 26185629 26185438 8.730000e-74 289.0
27 TraesCS2D01G220300 chr5D 94.271 192 11 0 1 192 311153124 311153315 1.880000e-75 294.0
28 TraesCS2D01G220300 chr5D 97.297 37 1 0 1286 1322 231475599 231475635 5.760000e-06 63.9
29 TraesCS2D01G220300 chr5D 100.000 32 0 0 1291 1322 231356275 231356306 7.450000e-05 60.2
30 TraesCS2D01G220300 chr6D 93.750 192 12 0 1 192 55594689 55594880 8.730000e-74 289.0
31 TraesCS2D01G220300 chr6D 90.972 144 13 0 1832 1975 392273085 392273228 1.960000e-45 195.0
32 TraesCS2D01G220300 chr3D 92.537 201 13 2 1 200 568044214 568044413 3.140000e-73 287.0
33 TraesCS2D01G220300 chr3A 92.466 146 9 2 1831 1975 602017742 602017886 2.510000e-49 207.0
34 TraesCS2D01G220300 chr4A 92.308 143 8 3 1830 1970 450791514 450791655 4.210000e-47 200.0
35 TraesCS2D01G220300 chr4A 89.474 57 4 2 1293 1347 614706364 614706420 3.440000e-08 71.3
36 TraesCS2D01G220300 chr3B 91.156 147 12 1 1836 1982 521797907 521797762 1.510000e-46 198.0
37 TraesCS2D01G220300 chr7B 91.525 59 4 1 1290 1347 739934835 739934777 5.720000e-11 80.5
38 TraesCS2D01G220300 chr1D 95.122 41 2 0 1282 1322 59132150 59132110 1.600000e-06 65.8
39 TraesCS2D01G220300 chr1A 100.000 35 0 0 1288 1322 511001599 511001565 1.600000e-06 65.8
40 TraesCS2D01G220300 chr1A 100.000 30 0 0 2819 2848 49093873 49093844 1.000000e-03 56.5
41 TraesCS2D01G220300 chr7D 97.297 37 1 0 1286 1322 254156712 254156748 5.760000e-06 63.9
42 TraesCS2D01G220300 chr7D 88.000 50 4 2 1289 1336 10855097 10855048 2.680000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G220300 chr2D 187640696 187647572 6876 False 12700.0000 12700 100.000000 1 6877 1 chr2D.!!$F1 6876
1 TraesCS2D01G220300 chr2A 200619029 200626098 7069 False 1586.0000 5264 91.588571 192 6819 7 chr2A.!!$F1 6627
2 TraesCS2D01G220300 chr2B 243783150 243789535 6385 False 1181.1625 3620 88.556250 358 6465 8 chr2B.!!$F2 6107

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.034896 TCCTGTTCTTCTCGCAACCC 59.965 55.000 0.00 0.0 0.00 4.11 F
132 133 0.035458 CCTGTTCTTCTCGCAACCCT 59.965 55.000 0.00 0.0 0.00 4.34 F
1486 1542 0.175760 GTGCCCTCGCTCTATCAACA 59.824 55.000 0.00 0.0 35.36 3.33 F
2986 3214 1.134521 ACAGGAAGACGCAAACACTGA 60.135 47.619 0.00 0.0 0.00 3.41 F
3488 3716 0.660300 CTGGTTCTTCCAAAACGCGC 60.660 55.000 5.73 0.0 46.59 6.86 F
4712 5210 4.440802 CCTTATATCTATGAGCGCCTGGAC 60.441 50.000 2.29 0.0 0.00 4.02 F
5753 6585 0.106217 CCCACACACCCAGGTCTTTT 60.106 55.000 0.00 0.0 0.00 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1491 1547 2.187100 TGAGCTCATACATGTGGACCA 58.813 47.619 13.74 0.0 0.00 4.02 R
1959 2168 6.351456 GCAGTTAGAGACTATTCCCTCTGTTT 60.351 42.308 0.00 0.0 39.81 2.83 R
3184 3412 1.547372 GCATTGGTGTTGATCCTTGCT 59.453 47.619 0.00 0.0 34.48 3.91 R
3806 4302 1.252904 TGGGCAGCTTCCTTTGATGC 61.253 55.000 1.39 0.0 44.89 3.91 R
5078 5910 0.321210 ACGTGCCAACATTCATCCGA 60.321 50.000 0.00 0.0 0.00 4.55 R
5774 6606 0.035458 GAGAAGACCTGGGTGTGTGG 59.965 60.000 0.00 0.0 0.00 4.17 R
6724 7596 0.237235 GGCGATGTTTTTCACGAGCA 59.763 50.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.147038 GTTCGAGAGCTTAAGAACTCTTTG 57.853 41.667 19.51 13.16 43.26 2.77
28 29 5.707242 TCGAGAGCTTAAGAACTCTTTGA 57.293 39.130 19.51 14.56 43.26 2.69
29 30 6.085555 TCGAGAGCTTAAGAACTCTTTGAA 57.914 37.500 19.51 5.07 43.26 2.69
30 31 6.513180 TCGAGAGCTTAAGAACTCTTTGAAA 58.487 36.000 19.51 3.87 43.26 2.69
31 32 7.155328 TCGAGAGCTTAAGAACTCTTTGAAAT 58.845 34.615 19.51 0.00 43.26 2.17
32 33 8.304596 TCGAGAGCTTAAGAACTCTTTGAAATA 58.695 33.333 19.51 1.22 43.26 1.40
33 34 8.376942 CGAGAGCTTAAGAACTCTTTGAAATAC 58.623 37.037 19.51 5.21 43.26 1.89
34 35 9.209175 GAGAGCTTAAGAACTCTTTGAAATACA 57.791 33.333 6.67 0.00 43.26 2.29
35 36 9.732130 AGAGCTTAAGAACTCTTTGAAATACAT 57.268 29.630 6.67 0.00 40.35 2.29
36 37 9.980780 GAGCTTAAGAACTCTTTGAAATACATC 57.019 33.333 6.67 0.00 37.40 3.06
37 38 8.951243 AGCTTAAGAACTCTTTGAAATACATCC 58.049 33.333 6.67 0.00 37.40 3.51
38 39 8.730680 GCTTAAGAACTCTTTGAAATACATCCA 58.269 33.333 6.67 0.00 37.40 3.41
40 41 9.793259 TTAAGAACTCTTTGAAATACATCCACT 57.207 29.630 0.00 0.00 37.40 4.00
42 43 9.793259 AAGAACTCTTTGAAATACATCCACTAA 57.207 29.630 0.00 0.00 30.82 2.24
43 44 9.793259 AGAACTCTTTGAAATACATCCACTAAA 57.207 29.630 0.00 0.00 0.00 1.85
45 46 8.045176 ACTCTTTGAAATACATCCACTAAAGC 57.955 34.615 0.00 0.00 0.00 3.51
46 47 7.665559 ACTCTTTGAAATACATCCACTAAAGCA 59.334 33.333 0.00 0.00 0.00 3.91
47 48 8.044060 TCTTTGAAATACATCCACTAAAGCAG 57.956 34.615 0.00 0.00 0.00 4.24
48 49 6.757897 TTGAAATACATCCACTAAAGCAGG 57.242 37.500 0.00 0.00 0.00 4.85
49 50 6.061022 TGAAATACATCCACTAAAGCAGGA 57.939 37.500 0.00 0.00 35.59 3.86
50 51 5.880332 TGAAATACATCCACTAAAGCAGGAC 59.120 40.000 0.00 0.00 33.57 3.85
51 52 5.700402 AATACATCCACTAAAGCAGGACT 57.300 39.130 0.00 0.00 33.57 3.85
52 53 6.808321 AATACATCCACTAAAGCAGGACTA 57.192 37.500 0.00 0.00 33.57 2.59
53 54 4.744795 ACATCCACTAAAGCAGGACTAG 57.255 45.455 0.00 0.00 33.57 2.57
54 55 4.353777 ACATCCACTAAAGCAGGACTAGA 58.646 43.478 0.00 0.00 33.57 2.43
55 56 4.404073 ACATCCACTAAAGCAGGACTAGAG 59.596 45.833 0.00 0.00 33.57 2.43
56 57 4.048970 TCCACTAAAGCAGGACTAGAGT 57.951 45.455 0.00 0.00 0.00 3.24
57 58 4.417437 TCCACTAAAGCAGGACTAGAGTT 58.583 43.478 0.00 0.00 0.00 3.01
58 59 4.838986 TCCACTAAAGCAGGACTAGAGTTT 59.161 41.667 0.00 0.00 0.00 2.66
59 60 5.307196 TCCACTAAAGCAGGACTAGAGTTTT 59.693 40.000 0.00 0.00 0.00 2.43
60 61 6.495872 TCCACTAAAGCAGGACTAGAGTTTTA 59.504 38.462 0.00 0.00 0.00 1.52
61 62 6.590677 CCACTAAAGCAGGACTAGAGTTTTAC 59.409 42.308 0.00 0.00 0.00 2.01
62 63 6.308282 CACTAAAGCAGGACTAGAGTTTTACG 59.692 42.308 0.00 0.00 0.00 3.18
63 64 3.233684 AGCAGGACTAGAGTTTTACGC 57.766 47.619 0.00 0.00 0.00 4.42
64 65 2.561419 AGCAGGACTAGAGTTTTACGCA 59.439 45.455 0.00 0.00 0.00 5.24
65 66 2.666994 GCAGGACTAGAGTTTTACGCAC 59.333 50.000 0.00 0.00 0.00 5.34
66 67 3.251571 CAGGACTAGAGTTTTACGCACC 58.748 50.000 0.00 0.00 0.00 5.01
67 68 2.233186 AGGACTAGAGTTTTACGCACCC 59.767 50.000 0.00 0.00 0.00 4.61
68 69 2.233186 GGACTAGAGTTTTACGCACCCT 59.767 50.000 0.00 0.00 0.00 4.34
69 70 3.509740 GACTAGAGTTTTACGCACCCTC 58.490 50.000 0.00 0.00 0.00 4.30
70 71 2.895404 ACTAGAGTTTTACGCACCCTCA 59.105 45.455 0.00 0.00 0.00 3.86
71 72 2.165319 AGAGTTTTACGCACCCTCAC 57.835 50.000 0.00 0.00 0.00 3.51
72 73 0.788391 GAGTTTTACGCACCCTCACG 59.212 55.000 0.00 0.00 0.00 4.35
73 74 0.601841 AGTTTTACGCACCCTCACGG 60.602 55.000 0.00 0.00 37.81 4.94
74 75 1.962306 TTTTACGCACCCTCACGGC 60.962 57.895 0.00 0.00 33.26 5.68
75 76 3.887335 TTTACGCACCCTCACGGCC 62.887 63.158 0.00 0.00 33.26 6.13
83 84 4.760047 CCTCACGGCCCGAACCTG 62.760 72.222 11.71 0.00 0.00 4.00
84 85 4.760047 CTCACGGCCCGAACCTGG 62.760 72.222 11.71 0.00 0.00 4.45
91 92 4.289312 CCCGAACCTGGGTAAACG 57.711 61.111 0.00 0.00 44.76 3.60
92 93 1.672898 CCCGAACCTGGGTAAACGA 59.327 57.895 0.00 0.00 44.76 3.85
93 94 0.251073 CCCGAACCTGGGTAAACGAT 59.749 55.000 0.00 0.00 44.76 3.73
94 95 1.648504 CCGAACCTGGGTAAACGATC 58.351 55.000 0.00 0.00 0.00 3.69
95 96 1.648504 CGAACCTGGGTAAACGATCC 58.351 55.000 0.00 0.00 0.00 3.36
96 97 1.648504 GAACCTGGGTAAACGATCCG 58.351 55.000 0.00 0.00 0.00 4.18
97 98 0.978907 AACCTGGGTAAACGATCCGT 59.021 50.000 0.00 0.00 43.97 4.69
98 99 0.248289 ACCTGGGTAAACGATCCGTG 59.752 55.000 0.00 0.00 39.99 4.94
99 100 0.248289 CCTGGGTAAACGATCCGTGT 59.752 55.000 0.00 0.00 39.99 4.49
100 101 1.477700 CCTGGGTAAACGATCCGTGTA 59.522 52.381 0.00 0.00 39.99 2.90
101 102 2.533266 CTGGGTAAACGATCCGTGTAC 58.467 52.381 10.43 10.43 46.20 2.90
102 103 2.165030 CTGGGTAAACGATCCGTGTACT 59.835 50.000 16.36 0.00 46.17 2.73
103 104 2.094597 TGGGTAAACGATCCGTGTACTG 60.095 50.000 16.36 0.00 46.17 2.74
104 105 2.164219 GGGTAAACGATCCGTGTACTGA 59.836 50.000 16.36 0.00 46.17 3.41
105 106 3.181483 GGGTAAACGATCCGTGTACTGAT 60.181 47.826 16.36 0.00 46.17 2.90
106 107 4.427312 GGTAAACGATCCGTGTACTGATT 58.573 43.478 16.36 0.00 46.17 2.57
107 108 5.450412 GGGTAAACGATCCGTGTACTGATTA 60.450 44.000 16.36 0.00 46.17 1.75
108 109 5.456822 GGTAAACGATCCGTGTACTGATTAC 59.543 44.000 16.36 8.76 46.17 1.89
109 110 4.978083 AACGATCCGTGTACTGATTACT 57.022 40.909 0.00 0.00 39.99 2.24
110 111 6.441093 AAACGATCCGTGTACTGATTACTA 57.559 37.500 0.00 0.00 39.99 1.82
111 112 6.441093 AACGATCCGTGTACTGATTACTAA 57.559 37.500 0.00 0.00 39.99 2.24
112 113 6.630444 ACGATCCGTGTACTGATTACTAAT 57.370 37.500 0.00 0.00 39.18 1.73
113 114 6.666417 ACGATCCGTGTACTGATTACTAATC 58.334 40.000 2.22 2.22 39.18 1.75
114 115 6.084925 CGATCCGTGTACTGATTACTAATCC 58.915 44.000 6.37 0.00 37.09 3.01
115 116 6.072618 CGATCCGTGTACTGATTACTAATCCT 60.073 42.308 6.37 0.00 37.09 3.24
116 117 6.387041 TCCGTGTACTGATTACTAATCCTG 57.613 41.667 6.37 2.91 37.09 3.86
117 118 5.889853 TCCGTGTACTGATTACTAATCCTGT 59.110 40.000 6.37 7.66 37.09 4.00
118 119 6.379133 TCCGTGTACTGATTACTAATCCTGTT 59.621 38.462 6.37 0.00 37.09 3.16
119 120 6.696148 CCGTGTACTGATTACTAATCCTGTTC 59.304 42.308 6.37 4.78 37.09 3.18
120 121 7.416438 CCGTGTACTGATTACTAATCCTGTTCT 60.416 40.741 6.37 0.00 37.09 3.01
121 122 7.974501 CGTGTACTGATTACTAATCCTGTTCTT 59.025 37.037 6.37 0.00 37.09 2.52
122 123 9.303537 GTGTACTGATTACTAATCCTGTTCTTC 57.696 37.037 6.37 0.81 37.09 2.87
123 124 9.256228 TGTACTGATTACTAATCCTGTTCTTCT 57.744 33.333 6.37 0.00 37.09 2.85
124 125 9.738832 GTACTGATTACTAATCCTGTTCTTCTC 57.261 37.037 6.37 0.00 37.09 2.87
125 126 7.484975 ACTGATTACTAATCCTGTTCTTCTCG 58.515 38.462 6.37 0.00 37.09 4.04
126 127 6.273825 TGATTACTAATCCTGTTCTTCTCGC 58.726 40.000 6.37 0.00 37.09 5.03
127 128 5.654603 TTACTAATCCTGTTCTTCTCGCA 57.345 39.130 0.00 0.00 0.00 5.10
128 129 4.537135 ACTAATCCTGTTCTTCTCGCAA 57.463 40.909 0.00 0.00 0.00 4.85
129 130 4.246458 ACTAATCCTGTTCTTCTCGCAAC 58.754 43.478 0.00 0.00 0.00 4.17
130 131 2.100605 ATCCTGTTCTTCTCGCAACC 57.899 50.000 0.00 0.00 0.00 3.77
131 132 0.034896 TCCTGTTCTTCTCGCAACCC 59.965 55.000 0.00 0.00 0.00 4.11
132 133 0.035458 CCTGTTCTTCTCGCAACCCT 59.965 55.000 0.00 0.00 0.00 4.34
133 134 1.151668 CTGTTCTTCTCGCAACCCTG 58.848 55.000 0.00 0.00 0.00 4.45
134 135 0.884704 TGTTCTTCTCGCAACCCTGC 60.885 55.000 0.00 0.00 45.75 4.85
152 153 3.773404 GCCCCGGCAACCGTAGTA 61.773 66.667 5.17 0.00 46.80 1.82
153 154 2.497770 CCCCGGCAACCGTAGTAG 59.502 66.667 5.17 0.00 46.80 2.57
154 155 2.497770 CCCGGCAACCGTAGTAGG 59.502 66.667 5.17 0.00 46.80 3.18
155 156 2.497770 CCGGCAACCGTAGTAGGG 59.502 66.667 7.36 7.36 46.80 3.53
156 157 2.053865 CCGGCAACCGTAGTAGGGA 61.054 63.158 15.76 0.00 46.80 4.20
157 158 1.397390 CCGGCAACCGTAGTAGGGAT 61.397 60.000 15.76 0.46 46.80 3.85
158 159 0.462789 CGGCAACCGTAGTAGGGATT 59.537 55.000 15.76 3.80 42.73 3.01
159 160 1.134610 CGGCAACCGTAGTAGGGATTT 60.135 52.381 15.76 0.00 42.73 2.17
160 161 2.678769 CGGCAACCGTAGTAGGGATTTT 60.679 50.000 15.76 0.00 42.73 1.82
161 162 3.349927 GGCAACCGTAGTAGGGATTTTT 58.650 45.455 15.76 0.00 35.02 1.94
162 163 3.128068 GGCAACCGTAGTAGGGATTTTTG 59.872 47.826 15.76 10.06 35.02 2.44
163 164 3.754850 GCAACCGTAGTAGGGATTTTTGT 59.245 43.478 15.76 0.00 35.02 2.83
164 165 4.379082 GCAACCGTAGTAGGGATTTTTGTG 60.379 45.833 15.76 3.49 35.02 3.33
165 166 4.895668 ACCGTAGTAGGGATTTTTGTGA 57.104 40.909 15.76 0.00 35.02 3.58
166 167 5.431179 ACCGTAGTAGGGATTTTTGTGAT 57.569 39.130 15.76 0.00 35.02 3.06
167 168 5.425630 ACCGTAGTAGGGATTTTTGTGATC 58.574 41.667 15.76 0.00 35.02 2.92
168 169 4.814771 CCGTAGTAGGGATTTTTGTGATCC 59.185 45.833 2.51 0.00 41.93 3.36
177 178 6.966534 GGATTTTTGTGATCCCATAGATGT 57.033 37.500 0.00 0.00 37.65 3.06
178 179 6.974965 GGATTTTTGTGATCCCATAGATGTC 58.025 40.000 0.00 0.00 37.65 3.06
179 180 6.293626 GGATTTTTGTGATCCCATAGATGTCG 60.294 42.308 0.00 0.00 37.65 4.35
180 181 4.753516 TTTGTGATCCCATAGATGTCGT 57.246 40.909 0.00 0.00 34.42 4.34
181 182 4.753516 TTGTGATCCCATAGATGTCGTT 57.246 40.909 0.00 0.00 34.42 3.85
182 183 4.322080 TGTGATCCCATAGATGTCGTTC 57.678 45.455 0.00 0.00 34.42 3.95
183 184 3.069586 TGTGATCCCATAGATGTCGTTCC 59.930 47.826 0.00 0.00 34.42 3.62
184 185 3.069586 GTGATCCCATAGATGTCGTTCCA 59.930 47.826 0.00 0.00 34.42 3.53
185 186 3.069586 TGATCCCATAGATGTCGTTCCAC 59.930 47.826 0.00 0.00 34.42 4.02
186 187 2.462723 TCCCATAGATGTCGTTCCACA 58.537 47.619 0.00 0.00 0.00 4.17
187 188 2.167693 TCCCATAGATGTCGTTCCACAC 59.832 50.000 0.00 0.00 0.00 3.82
188 189 2.550978 CCATAGATGTCGTTCCACACC 58.449 52.381 0.00 0.00 0.00 4.16
189 190 2.193447 CATAGATGTCGTTCCACACCG 58.807 52.381 0.00 0.00 0.00 4.94
190 191 1.536940 TAGATGTCGTTCCACACCGA 58.463 50.000 0.00 0.00 0.00 4.69
225 226 6.438259 TTGACAAGAATGTAAACGAAACCA 57.562 33.333 0.00 0.00 40.74 3.67
227 228 6.853720 TGACAAGAATGTAAACGAAACCAAA 58.146 32.000 0.00 0.00 40.74 3.28
237 238 9.819267 ATGTAAACGAAACCAAAGGAAAATAAA 57.181 25.926 0.00 0.00 0.00 1.40
259 260 2.970609 CGATTTACAAAGTTGCACACCG 59.029 45.455 0.00 0.00 0.00 4.94
278 279 5.123820 ACACCGGAATTTATGTCAGTTCATG 59.876 40.000 9.46 0.00 0.00 3.07
279 280 5.123820 CACCGGAATTTATGTCAGTTCATGT 59.876 40.000 9.46 0.00 0.00 3.21
288 289 5.929697 ATGTCAGTTCATGTACAAGTGTG 57.070 39.130 0.00 0.00 0.00 3.82
290 291 4.808895 TGTCAGTTCATGTACAAGTGTGTC 59.191 41.667 0.00 0.00 39.30 3.67
309 310 5.167845 GTGTCACTTTCTCTGATTCTCTCC 58.832 45.833 0.00 0.00 0.00 3.71
331 339 6.112734 TCCGTAAAAGAGAATATGCACATGT 58.887 36.000 0.00 0.00 0.00 3.21
334 342 6.037062 CGTAAAAGAGAATATGCACATGTCCA 59.963 38.462 0.00 0.00 0.00 4.02
351 359 1.837439 TCCATCCTTGGTCGCACTTAT 59.163 47.619 0.00 0.00 44.06 1.73
356 364 0.370273 CTTGGTCGCACTTATCACGC 59.630 55.000 0.00 0.00 0.00 5.34
385 403 1.535444 TCCCGCTTCTTCCTCCACA 60.535 57.895 0.00 0.00 0.00 4.17
512 531 2.261361 GCGAATTTGGTGGTGCCC 59.739 61.111 0.00 0.00 36.04 5.36
514 533 0.963355 GCGAATTTGGTGGTGCCCTA 60.963 55.000 0.00 0.00 36.04 3.53
515 534 0.808755 CGAATTTGGTGGTGCCCTAC 59.191 55.000 0.00 0.00 36.04 3.18
516 535 1.613255 CGAATTTGGTGGTGCCCTACT 60.613 52.381 0.00 0.00 36.04 2.57
517 536 2.525368 GAATTTGGTGGTGCCCTACTT 58.475 47.619 0.00 0.00 36.04 2.24
518 537 2.694616 ATTTGGTGGTGCCCTACTTT 57.305 45.000 0.00 0.00 36.04 2.66
519 538 2.463047 TTTGGTGGTGCCCTACTTTT 57.537 45.000 0.00 0.00 36.04 2.27
520 539 3.596940 TTTGGTGGTGCCCTACTTTTA 57.403 42.857 0.00 0.00 36.04 1.52
540 559 7.451566 ACTTTTATTGGTGCATTTTCCTAGACT 59.548 33.333 0.00 0.00 0.00 3.24
560 579 5.994668 AGACTTGTTCTTTCTGTGATTCCTC 59.005 40.000 0.00 0.00 0.00 3.71
838 858 0.804989 CGGGGCATTGTTCTGAGTTC 59.195 55.000 0.00 0.00 0.00 3.01
888 912 1.375523 ACTGGATTTCGTCGGCCAC 60.376 57.895 2.24 0.00 0.00 5.01
970 994 2.571212 GGGAATCACATTGCGATGGTA 58.429 47.619 18.31 5.95 37.60 3.25
1093 1117 1.729881 GGACGATTGCTCATTGGCC 59.270 57.895 0.00 0.00 37.28 5.36
1337 1392 5.258456 AGAGCGTCCGATATTTCTTTACA 57.742 39.130 0.00 0.00 0.00 2.41
1411 1467 0.464036 TGCCACCATCGAGACCATAC 59.536 55.000 0.00 0.00 0.00 2.39
1417 1473 3.804325 CACCATCGAGACCATACAATGAC 59.196 47.826 0.00 0.00 0.00 3.06
1484 1540 0.975556 TGGTGCCCTCGCTCTATCAA 60.976 55.000 0.00 0.00 35.36 2.57
1486 1542 0.175760 GTGCCCTCGCTCTATCAACA 59.824 55.000 0.00 0.00 35.36 3.33
1491 1547 3.306364 GCCCTCGCTCTATCAACACATAT 60.306 47.826 0.00 0.00 0.00 1.78
1567 1623 6.037786 TCTTCGAATTACCTGTGACAGAAT 57.962 37.500 15.33 3.84 32.44 2.40
1724 1843 5.163437 CCCTCCTGTTAGGTACACATTACTC 60.163 48.000 0.00 0.00 36.53 2.59
1758 1877 5.358725 TGAGTAGCATGTGTCGGATTAACTA 59.641 40.000 0.00 0.00 0.00 2.24
2211 2433 7.009357 GCCTTCAAGATGTTAGAAACTACTACG 59.991 40.741 0.00 0.00 0.00 3.51
2278 2500 1.839424 GGAACTTCCCCTGTCATTGG 58.161 55.000 0.00 0.00 0.00 3.16
2295 2517 2.574018 GGAAAAGGTGCAGGCCCAC 61.574 63.158 0.00 0.18 35.00 4.61
2382 2604 4.796038 AACCTACCCGATGGTTATATCG 57.204 45.455 0.00 0.00 44.75 2.92
2407 2629 8.364677 CGAAACACTTATCGCCTCAATAAGAGA 61.365 40.741 9.26 0.00 44.40 3.10
2895 3123 1.915141 AGGCCCAAACACTGATCAAG 58.085 50.000 0.00 0.00 0.00 3.02
2986 3214 1.134521 ACAGGAAGACGCAAACACTGA 60.135 47.619 0.00 0.00 0.00 3.41
3178 3406 1.250328 CCAATGGCTGCTTCTGTTGA 58.750 50.000 0.00 0.00 0.00 3.18
3184 3412 2.224597 TGGCTGCTTCTGTTGATTCTGA 60.225 45.455 0.00 0.00 0.00 3.27
3206 3434 2.173519 CAAGGATCAACACCAATGCCT 58.826 47.619 0.00 0.00 0.00 4.75
3484 3712 1.269778 GCTGCCTGGTTCTTCCAAAAC 60.270 52.381 0.00 0.00 46.59 2.43
3488 3716 0.660300 CTGGTTCTTCCAAAACGCGC 60.660 55.000 5.73 0.00 46.59 6.86
3532 3760 5.181811 CAGGCAATAAAACAGACACAGATGA 59.818 40.000 0.00 0.00 0.00 2.92
3937 4433 6.653740 GTGCAGTTAAGGAAGGTAAAGTGTAT 59.346 38.462 0.00 0.00 0.00 2.29
4712 5210 4.440802 CCTTATATCTATGAGCGCCTGGAC 60.441 50.000 2.29 0.00 0.00 4.02
4869 5701 5.640783 TGTATCAGTCTTGTTTGATGCTCTG 59.359 40.000 4.64 0.00 37.34 3.35
5078 5910 6.543735 AGAAGCTGTACTTAAAACAGGGAAT 58.456 36.000 15.72 0.00 43.71 3.01
5320 6152 1.897560 AAACAACTAGGTCTGCAGGC 58.102 50.000 15.13 13.00 0.00 4.85
5388 6220 2.995283 TCCTTGATGCAGATCAGTTGG 58.005 47.619 0.00 0.00 39.81 3.77
5400 6232 3.319405 AGATCAGTTGGCTATGTCGGTAG 59.681 47.826 0.00 0.00 0.00 3.18
5408 6240 2.194271 GCTATGTCGGTAGCAAGTGTC 58.806 52.381 9.50 0.00 45.03 3.67
5410 6242 0.601558 ATGTCGGTAGCAAGTGTCGT 59.398 50.000 0.00 0.00 0.00 4.34
5666 6498 0.874390 TCGCAATGCTTGACAAGGTC 59.126 50.000 16.80 1.82 0.00 3.85
5697 6529 6.545666 TGAGGTGAAAGAAGCATCAAAAGTAA 59.454 34.615 0.00 0.00 0.00 2.24
5737 6569 2.303022 CTGAAGTTACTCTGCCTTCCCA 59.697 50.000 0.00 0.00 34.95 4.37
5747 6579 2.436109 CCTTCCCACACACCCAGG 59.564 66.667 0.00 0.00 0.00 4.45
5748 6580 2.460853 CCTTCCCACACACCCAGGT 61.461 63.158 0.00 0.00 0.00 4.00
5749 6581 1.073199 CTTCCCACACACCCAGGTC 59.927 63.158 0.00 0.00 0.00 3.85
5750 6582 1.385347 TTCCCACACACCCAGGTCT 60.385 57.895 0.00 0.00 0.00 3.85
5751 6583 0.991355 TTCCCACACACCCAGGTCTT 60.991 55.000 0.00 0.00 0.00 3.01
5752 6584 0.991355 TCCCACACACCCAGGTCTTT 60.991 55.000 0.00 0.00 0.00 2.52
5753 6585 0.106217 CCCACACACCCAGGTCTTTT 60.106 55.000 0.00 0.00 0.00 2.27
5754 6586 1.318576 CCACACACCCAGGTCTTTTC 58.681 55.000 0.00 0.00 0.00 2.29
5755 6587 1.409521 CCACACACCCAGGTCTTTTCA 60.410 52.381 0.00 0.00 0.00 2.69
5756 6588 2.374184 CACACACCCAGGTCTTTTCAA 58.626 47.619 0.00 0.00 0.00 2.69
5757 6589 2.358898 CACACACCCAGGTCTTTTCAAG 59.641 50.000 0.00 0.00 0.00 3.02
5758 6590 2.241176 ACACACCCAGGTCTTTTCAAGA 59.759 45.455 0.00 0.00 34.51 3.02
5759 6591 3.117512 ACACACCCAGGTCTTTTCAAGAT 60.118 43.478 0.00 0.00 40.18 2.40
5760 6592 3.503748 CACACCCAGGTCTTTTCAAGATC 59.496 47.826 0.00 0.00 40.18 2.75
5761 6593 3.084786 CACCCAGGTCTTTTCAAGATCC 58.915 50.000 0.00 0.00 39.53 3.36
5762 6594 2.041755 ACCCAGGTCTTTTCAAGATCCC 59.958 50.000 0.00 0.00 39.53 3.85
5763 6595 2.621668 CCCAGGTCTTTTCAAGATCCCC 60.622 54.545 0.00 0.00 39.53 4.81
5764 6596 2.359900 CAGGTCTTTTCAAGATCCCCG 58.640 52.381 0.00 0.00 39.53 5.73
5765 6597 1.282157 AGGTCTTTTCAAGATCCCCGG 59.718 52.381 0.00 0.00 39.53 5.73
5766 6598 1.095600 GTCTTTTCAAGATCCCCGGC 58.904 55.000 0.00 0.00 40.18 6.13
5767 6599 0.392461 TCTTTTCAAGATCCCCGGCG 60.392 55.000 0.00 0.00 31.20 6.46
5768 6600 0.676782 CTTTTCAAGATCCCCGGCGT 60.677 55.000 6.01 0.00 0.00 5.68
5769 6601 0.614294 TTTTCAAGATCCCCGGCGTA 59.386 50.000 6.01 0.00 0.00 4.42
5770 6602 0.177141 TTTCAAGATCCCCGGCGTAG 59.823 55.000 6.01 0.00 0.00 3.51
5771 6603 0.974010 TTCAAGATCCCCGGCGTAGT 60.974 55.000 6.01 0.00 0.00 2.73
5772 6604 0.974010 TCAAGATCCCCGGCGTAGTT 60.974 55.000 6.01 0.00 0.00 2.24
5773 6605 0.529992 CAAGATCCCCGGCGTAGTTC 60.530 60.000 6.01 1.22 0.00 3.01
5774 6606 1.683418 AAGATCCCCGGCGTAGTTCC 61.683 60.000 6.01 0.00 0.00 3.62
5775 6607 3.159347 ATCCCCGGCGTAGTTCCC 61.159 66.667 6.01 0.00 0.00 3.97
5776 6608 3.988050 ATCCCCGGCGTAGTTCCCA 62.988 63.158 6.01 0.00 0.00 4.37
5777 6609 4.462280 CCCCGGCGTAGTTCCCAC 62.462 72.222 6.01 0.00 0.00 4.61
5778 6610 3.697747 CCCGGCGTAGTTCCCACA 61.698 66.667 6.01 0.00 0.00 4.17
5779 6611 2.433664 CCGGCGTAGTTCCCACAC 60.434 66.667 6.01 0.00 0.00 3.82
5780 6612 2.340809 CGGCGTAGTTCCCACACA 59.659 61.111 0.00 0.00 0.00 3.72
5791 6623 1.073199 CCCACACACCCAGGTCTTC 59.927 63.158 0.00 0.00 0.00 2.87
5806 6638 0.617535 TCTTCTCAAGATCCCCGGCA 60.618 55.000 0.00 0.00 31.20 5.69
5829 6661 3.828875 ACCTTTTTCCGGCAATTCAAA 57.171 38.095 0.00 0.00 0.00 2.69
5864 6696 7.195646 CAGATAGTTCAAGCTCTAGTTCTGAG 58.804 42.308 5.46 0.00 30.86 3.35
5965 6797 7.549488 ACATTAGTAAGAAGAGATGGAAAACCG 59.451 37.037 0.00 0.00 0.00 4.44
6064 6897 5.945144 ATAAAATTGCTGAAGGAAGGCAT 57.055 34.783 0.00 0.00 35.84 4.40
6158 6993 2.123342 CGATCAAGATGGAGAAGTCGC 58.877 52.381 0.00 0.00 0.00 5.19
6326 7163 9.790344 CATCACAGAAAGGAGAGGAATAAATAT 57.210 33.333 0.00 0.00 0.00 1.28
6353 7190 9.136323 AGTATTCTTTTAGGGGAATAAATGCAG 57.864 33.333 0.00 0.00 36.56 4.41
6397 7255 3.949754 CCACACAGGCTCATAAACATGAT 59.050 43.478 0.00 0.00 0.00 2.45
6403 7262 7.445402 ACACAGGCTCATAAACATGATAATACC 59.555 37.037 0.00 0.00 0.00 2.73
6434 7293 5.947443 AGAGCAAAGCTGTAAATTGTCATC 58.053 37.500 0.00 0.00 39.88 2.92
6473 7332 0.790207 GTGTGTTCGCGTCATGTGAT 59.210 50.000 5.77 0.00 36.86 3.06
6474 7333 1.194547 GTGTGTTCGCGTCATGTGATT 59.805 47.619 5.77 0.00 36.86 2.57
6475 7334 2.410392 GTGTGTTCGCGTCATGTGATTA 59.590 45.455 5.77 0.00 36.86 1.75
6480 7339 6.143278 TGTGTTCGCGTCATGTGATTATATAC 59.857 38.462 5.77 0.00 36.86 1.47
6524 7383 0.391130 GCAATGTGGCGTGAGACCTA 60.391 55.000 0.00 0.00 39.67 3.08
6537 7396 3.946558 GTGAGACCTAGTACCAGATTCGT 59.053 47.826 0.00 0.00 0.00 3.85
6538 7397 3.945921 TGAGACCTAGTACCAGATTCGTG 59.054 47.826 0.00 0.00 0.00 4.35
6551 7410 1.848932 ATTCGTGCTGCTGTGCTGTG 61.849 55.000 0.00 0.00 0.00 3.66
6574 7446 3.376546 GTCGATCTGTACCTACCGTTTCT 59.623 47.826 0.00 0.00 0.00 2.52
6597 7469 1.043116 CCGTCTGGATAGTCAGGGCA 61.043 60.000 0.00 0.00 37.49 5.36
6649 7521 8.649973 ATTAGGAGTGATAATTGTTTCGTCTC 57.350 34.615 0.00 0.00 0.00 3.36
6663 7535 0.673644 CGTCTCCCGTGCCATTTCTT 60.674 55.000 0.00 0.00 0.00 2.52
6666 7538 2.418976 GTCTCCCGTGCCATTTCTTTAC 59.581 50.000 0.00 0.00 0.00 2.01
6667 7539 2.039216 TCTCCCGTGCCATTTCTTTACA 59.961 45.455 0.00 0.00 0.00 2.41
6716 7588 0.107410 ATCGCAAGTATTTCCCGCCA 60.107 50.000 0.00 0.00 39.48 5.69
6719 7591 1.134175 CGCAAGTATTTCCCGCCAAAT 59.866 47.619 0.00 0.00 0.00 2.32
6720 7592 2.539476 GCAAGTATTTCCCGCCAAATG 58.461 47.619 1.18 0.00 0.00 2.32
6721 7593 2.094234 GCAAGTATTTCCCGCCAAATGT 60.094 45.455 1.18 0.00 0.00 2.71
6724 7596 3.697166 AGTATTTCCCGCCAAATGTCTT 58.303 40.909 1.18 0.00 0.00 3.01
6725 7597 3.443681 AGTATTTCCCGCCAAATGTCTTG 59.556 43.478 1.18 0.00 0.00 3.02
6726 7598 0.316841 TTTCCCGCCAAATGTCTTGC 59.683 50.000 0.00 0.00 0.00 4.01
6729 7601 1.135315 CCGCCAAATGTCTTGCTCG 59.865 57.895 0.00 0.00 0.00 5.03
6730 7602 1.577328 CCGCCAAATGTCTTGCTCGT 61.577 55.000 0.00 0.00 0.00 4.18
6731 7603 0.453282 CGCCAAATGTCTTGCTCGTG 60.453 55.000 0.00 0.00 0.00 4.35
6733 7605 1.266718 GCCAAATGTCTTGCTCGTGAA 59.733 47.619 0.00 0.00 0.00 3.18
6734 7606 2.287547 GCCAAATGTCTTGCTCGTGAAA 60.288 45.455 0.00 0.00 0.00 2.69
6735 7607 3.795150 GCCAAATGTCTTGCTCGTGAAAA 60.795 43.478 0.00 0.00 0.00 2.29
6736 7608 4.358851 CCAAATGTCTTGCTCGTGAAAAA 58.641 39.130 0.00 0.00 0.00 1.94
6737 7609 4.207019 CCAAATGTCTTGCTCGTGAAAAAC 59.793 41.667 0.00 0.00 0.00 2.43
6738 7610 4.630894 AATGTCTTGCTCGTGAAAAACA 57.369 36.364 0.00 0.00 0.00 2.83
6739 7611 4.836125 ATGTCTTGCTCGTGAAAAACAT 57.164 36.364 0.00 0.00 0.00 2.71
6740 7612 4.209452 TGTCTTGCTCGTGAAAAACATC 57.791 40.909 0.00 0.00 0.00 3.06
6745 7632 1.950472 CTCGTGAAAAACATCGCCAC 58.050 50.000 0.00 0.00 0.00 5.01
6749 7636 2.604373 CGTGAAAAACATCGCCACACAT 60.604 45.455 0.00 0.00 0.00 3.21
6751 7638 4.158384 GTGAAAAACATCGCCACACATAG 58.842 43.478 0.00 0.00 0.00 2.23
6757 7644 1.134699 CATCGCCACACATAGTCCACT 60.135 52.381 0.00 0.00 0.00 4.00
6785 7672 3.243839 CCGCCAAAATTCCATTATCCCTG 60.244 47.826 0.00 0.00 0.00 4.45
6792 7679 4.881019 ATTCCATTATCCCTGACTCGAG 57.119 45.455 11.84 11.84 0.00 4.04
6795 7682 0.962489 ATTATCCCTGACTCGAGCCG 59.038 55.000 13.61 0.38 0.00 5.52
6807 7694 1.226603 CGAGCCGTAGCACACCTAC 60.227 63.158 0.00 0.00 43.56 3.18
6819 7706 5.395682 AGCACACCTACGTATTGTAAAGA 57.604 39.130 9.08 0.00 31.20 2.52
6820 7707 5.166398 AGCACACCTACGTATTGTAAAGAC 58.834 41.667 9.08 0.22 34.01 3.01
6830 7717 5.891810 GTATTGTAAAGACGAGAGCATCC 57.108 43.478 0.00 0.00 33.66 3.51
6831 7718 4.744795 ATTGTAAAGACGAGAGCATCCT 57.255 40.909 0.00 0.00 33.66 3.24
6832 7719 4.537135 TTGTAAAGACGAGAGCATCCTT 57.463 40.909 0.00 0.00 33.66 3.36
6833 7720 5.654603 TTGTAAAGACGAGAGCATCCTTA 57.345 39.130 0.00 0.00 33.66 2.69
6834 7721 5.250235 TGTAAAGACGAGAGCATCCTTAG 57.750 43.478 0.00 0.00 33.66 2.18
6835 7722 4.705507 TGTAAAGACGAGAGCATCCTTAGT 59.294 41.667 0.00 0.00 33.66 2.24
6836 7723 4.379339 AAAGACGAGAGCATCCTTAGTC 57.621 45.455 0.00 0.00 33.66 2.59
6837 7724 3.290948 AGACGAGAGCATCCTTAGTCT 57.709 47.619 0.00 0.00 33.66 3.24
6838 7725 4.425180 AGACGAGAGCATCCTTAGTCTA 57.575 45.455 0.00 0.00 34.81 2.59
6839 7726 4.783055 AGACGAGAGCATCCTTAGTCTAA 58.217 43.478 0.00 0.00 34.81 2.10
6840 7727 4.577283 AGACGAGAGCATCCTTAGTCTAAC 59.423 45.833 0.00 0.00 34.81 2.34
6841 7728 4.270834 ACGAGAGCATCCTTAGTCTAACA 58.729 43.478 0.00 0.00 33.66 2.41
6842 7729 4.336993 ACGAGAGCATCCTTAGTCTAACAG 59.663 45.833 0.00 0.00 33.66 3.16
6843 7730 4.616953 GAGAGCATCCTTAGTCTAACAGC 58.383 47.826 0.00 0.00 33.66 4.40
6844 7731 4.285863 AGAGCATCCTTAGTCTAACAGCT 58.714 43.478 0.00 0.00 33.66 4.24
6845 7732 4.714308 AGAGCATCCTTAGTCTAACAGCTT 59.286 41.667 0.00 0.00 33.66 3.74
6846 7733 5.017294 AGCATCCTTAGTCTAACAGCTTC 57.983 43.478 0.00 0.00 0.00 3.86
6847 7734 3.799420 GCATCCTTAGTCTAACAGCTTCG 59.201 47.826 0.00 0.00 0.00 3.79
6848 7735 3.505464 TCCTTAGTCTAACAGCTTCGC 57.495 47.619 0.00 0.00 0.00 4.70
6849 7736 2.823747 TCCTTAGTCTAACAGCTTCGCA 59.176 45.455 0.00 0.00 0.00 5.10
6850 7737 3.119459 TCCTTAGTCTAACAGCTTCGCAG 60.119 47.826 0.00 0.00 0.00 5.18
6851 7738 3.119459 CCTTAGTCTAACAGCTTCGCAGA 60.119 47.826 0.00 0.00 0.00 4.26
6852 7739 4.440802 CCTTAGTCTAACAGCTTCGCAGAT 60.441 45.833 0.00 0.00 35.04 2.90
6853 7740 3.601443 AGTCTAACAGCTTCGCAGATT 57.399 42.857 0.00 0.00 35.04 2.40
6854 7741 4.720649 AGTCTAACAGCTTCGCAGATTA 57.279 40.909 0.00 0.00 35.04 1.75
6855 7742 5.073311 AGTCTAACAGCTTCGCAGATTAA 57.927 39.130 0.00 0.00 35.04 1.40
6856 7743 5.665459 AGTCTAACAGCTTCGCAGATTAAT 58.335 37.500 0.00 0.00 35.04 1.40
6857 7744 6.109359 AGTCTAACAGCTTCGCAGATTAATT 58.891 36.000 0.00 0.00 35.04 1.40
6858 7745 6.595716 AGTCTAACAGCTTCGCAGATTAATTT 59.404 34.615 0.00 0.00 35.04 1.82
6859 7746 7.119846 AGTCTAACAGCTTCGCAGATTAATTTT 59.880 33.333 0.00 0.00 35.04 1.82
6860 7747 8.388103 GTCTAACAGCTTCGCAGATTAATTTTA 58.612 33.333 0.00 0.00 35.04 1.52
6861 7748 8.604035 TCTAACAGCTTCGCAGATTAATTTTAG 58.396 33.333 0.00 0.00 35.04 1.85
6862 7749 6.743575 ACAGCTTCGCAGATTAATTTTAGT 57.256 33.333 0.00 0.00 35.04 2.24
6863 7750 7.843490 ACAGCTTCGCAGATTAATTTTAGTA 57.157 32.000 0.00 0.00 35.04 1.82
6864 7751 8.263940 ACAGCTTCGCAGATTAATTTTAGTAA 57.736 30.769 0.00 0.00 35.04 2.24
6865 7752 8.391106 ACAGCTTCGCAGATTAATTTTAGTAAG 58.609 33.333 0.00 0.00 35.04 2.34
6866 7753 7.852945 CAGCTTCGCAGATTAATTTTAGTAAGG 59.147 37.037 0.00 0.00 35.04 2.69
6867 7754 7.769044 AGCTTCGCAGATTAATTTTAGTAAGGA 59.231 33.333 0.00 0.00 35.04 3.36
6868 7755 8.560374 GCTTCGCAGATTAATTTTAGTAAGGAT 58.440 33.333 0.00 0.00 35.04 3.24
6872 7759 9.370126 CGCAGATTAATTTTAGTAAGGATTTCG 57.630 33.333 0.00 0.00 0.00 3.46
6873 7760 9.170584 GCAGATTAATTTTAGTAAGGATTTCGC 57.829 33.333 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.989044 AGTTCTTAAGCTCTCGAACTAGC 58.011 43.478 17.65 6.06 42.90 3.42
1 2 6.431198 AGAGTTCTTAAGCTCTCGAACTAG 57.569 41.667 18.60 0.00 44.23 2.57
4 5 5.921408 TCAAAGAGTTCTTAAGCTCTCGAAC 59.079 40.000 11.61 11.75 40.80 3.95
6 7 5.707242 TCAAAGAGTTCTTAAGCTCTCGA 57.293 39.130 11.61 9.33 40.80 4.04
7 8 6.771188 TTTCAAAGAGTTCTTAAGCTCTCG 57.229 37.500 11.61 7.66 40.80 4.04
8 9 9.209175 TGTATTTCAAAGAGTTCTTAAGCTCTC 57.791 33.333 11.61 13.21 40.80 3.20
9 10 9.732130 ATGTATTTCAAAGAGTTCTTAAGCTCT 57.268 29.630 6.77 6.77 43.22 4.09
10 11 9.980780 GATGTATTTCAAAGAGTTCTTAAGCTC 57.019 33.333 0.00 0.00 34.61 4.09
11 12 8.951243 GGATGTATTTCAAAGAGTTCTTAAGCT 58.049 33.333 0.00 0.00 34.61 3.74
12 13 8.730680 TGGATGTATTTCAAAGAGTTCTTAAGC 58.269 33.333 0.00 0.00 34.61 3.09
14 15 9.793259 AGTGGATGTATTTCAAAGAGTTCTTAA 57.207 29.630 0.00 0.00 34.61 1.85
16 17 9.793259 TTAGTGGATGTATTTCAAAGAGTTCTT 57.207 29.630 0.00 0.00 37.91 2.52
17 18 9.793259 TTTAGTGGATGTATTTCAAAGAGTTCT 57.207 29.630 0.00 0.00 0.00 3.01
19 20 8.515414 GCTTTAGTGGATGTATTTCAAAGAGTT 58.485 33.333 0.00 0.00 0.00 3.01
20 21 7.665559 TGCTTTAGTGGATGTATTTCAAAGAGT 59.334 33.333 0.00 0.00 0.00 3.24
21 22 8.044060 TGCTTTAGTGGATGTATTTCAAAGAG 57.956 34.615 0.00 0.00 0.00 2.85
22 23 7.121168 CCTGCTTTAGTGGATGTATTTCAAAGA 59.879 37.037 0.00 0.00 0.00 2.52
23 24 7.121168 TCCTGCTTTAGTGGATGTATTTCAAAG 59.879 37.037 0.00 0.00 0.00 2.77
24 25 6.945435 TCCTGCTTTAGTGGATGTATTTCAAA 59.055 34.615 0.00 0.00 0.00 2.69
25 26 6.374333 GTCCTGCTTTAGTGGATGTATTTCAA 59.626 38.462 0.00 0.00 32.03 2.69
26 27 5.880332 GTCCTGCTTTAGTGGATGTATTTCA 59.120 40.000 0.00 0.00 32.03 2.69
27 28 6.116126 AGTCCTGCTTTAGTGGATGTATTTC 58.884 40.000 0.00 0.00 32.03 2.17
28 29 6.067217 AGTCCTGCTTTAGTGGATGTATTT 57.933 37.500 0.00 0.00 32.03 1.40
29 30 5.700402 AGTCCTGCTTTAGTGGATGTATT 57.300 39.130 0.00 0.00 32.03 1.89
30 31 6.136857 TCTAGTCCTGCTTTAGTGGATGTAT 58.863 40.000 0.00 0.00 32.03 2.29
31 32 5.516044 TCTAGTCCTGCTTTAGTGGATGTA 58.484 41.667 0.00 0.00 32.03 2.29
32 33 4.353777 TCTAGTCCTGCTTTAGTGGATGT 58.646 43.478 0.00 0.00 32.03 3.06
33 34 4.404073 ACTCTAGTCCTGCTTTAGTGGATG 59.596 45.833 0.00 0.00 32.03 3.51
34 35 4.615513 ACTCTAGTCCTGCTTTAGTGGAT 58.384 43.478 0.00 0.00 32.03 3.41
35 36 4.048970 ACTCTAGTCCTGCTTTAGTGGA 57.951 45.455 0.00 0.00 0.00 4.02
36 37 4.810191 AACTCTAGTCCTGCTTTAGTGG 57.190 45.455 0.00 0.00 0.00 4.00
37 38 6.308282 CGTAAAACTCTAGTCCTGCTTTAGTG 59.692 42.308 0.00 0.00 0.00 2.74
38 39 6.388278 CGTAAAACTCTAGTCCTGCTTTAGT 58.612 40.000 0.00 0.00 0.00 2.24
39 40 5.288952 GCGTAAAACTCTAGTCCTGCTTTAG 59.711 44.000 0.00 0.00 0.00 1.85
40 41 5.166398 GCGTAAAACTCTAGTCCTGCTTTA 58.834 41.667 0.00 0.00 0.00 1.85
41 42 3.995048 GCGTAAAACTCTAGTCCTGCTTT 59.005 43.478 0.00 0.00 0.00 3.51
42 43 3.006537 TGCGTAAAACTCTAGTCCTGCTT 59.993 43.478 0.00 0.00 0.00 3.91
43 44 2.561419 TGCGTAAAACTCTAGTCCTGCT 59.439 45.455 0.00 0.00 0.00 4.24
44 45 2.666994 GTGCGTAAAACTCTAGTCCTGC 59.333 50.000 0.00 0.00 0.00 4.85
45 46 3.251571 GGTGCGTAAAACTCTAGTCCTG 58.748 50.000 0.00 0.00 0.00 3.86
46 47 2.233186 GGGTGCGTAAAACTCTAGTCCT 59.767 50.000 0.00 0.00 0.00 3.85
47 48 2.233186 AGGGTGCGTAAAACTCTAGTCC 59.767 50.000 0.00 0.00 0.00 3.85
48 49 3.057033 TGAGGGTGCGTAAAACTCTAGTC 60.057 47.826 0.00 0.00 0.00 2.59
49 50 2.895404 TGAGGGTGCGTAAAACTCTAGT 59.105 45.455 0.00 0.00 0.00 2.57
50 51 3.251571 GTGAGGGTGCGTAAAACTCTAG 58.748 50.000 0.00 0.00 0.00 2.43
51 52 2.352030 CGTGAGGGTGCGTAAAACTCTA 60.352 50.000 0.00 0.00 0.00 2.43
52 53 1.604693 CGTGAGGGTGCGTAAAACTCT 60.605 52.381 0.00 0.00 0.00 3.24
53 54 0.788391 CGTGAGGGTGCGTAAAACTC 59.212 55.000 0.00 0.00 0.00 3.01
54 55 2.908817 CGTGAGGGTGCGTAAAACT 58.091 52.632 0.00 0.00 0.00 2.66
67 68 4.760047 CCAGGTTCGGGCCGTGAG 62.760 72.222 27.32 12.22 0.00 3.51
75 76 1.648504 GATCGTTTACCCAGGTTCGG 58.351 55.000 0.00 0.00 0.00 4.30
76 77 1.648504 GGATCGTTTACCCAGGTTCG 58.351 55.000 0.00 0.00 0.00 3.95
77 78 1.066645 ACGGATCGTTTACCCAGGTTC 60.067 52.381 0.00 0.00 36.35 3.62
78 79 0.978907 ACGGATCGTTTACCCAGGTT 59.021 50.000 0.00 0.00 36.35 3.50
79 80 0.248289 CACGGATCGTTTACCCAGGT 59.752 55.000 0.00 0.00 38.32 4.00
80 81 0.248289 ACACGGATCGTTTACCCAGG 59.752 55.000 0.00 0.00 38.32 4.45
81 82 2.165030 AGTACACGGATCGTTTACCCAG 59.835 50.000 11.51 0.00 41.87 4.45
82 83 2.094597 CAGTACACGGATCGTTTACCCA 60.095 50.000 11.51 0.00 41.87 4.51
83 84 2.164219 TCAGTACACGGATCGTTTACCC 59.836 50.000 11.51 0.00 41.87 3.69
84 85 3.492421 TCAGTACACGGATCGTTTACC 57.508 47.619 11.51 0.00 41.87 2.85
85 86 6.261118 AGTAATCAGTACACGGATCGTTTAC 58.739 40.000 8.22 8.22 41.44 2.01
86 87 6.441093 AGTAATCAGTACACGGATCGTTTA 57.559 37.500 0.00 0.00 38.32 2.01
87 88 5.320549 AGTAATCAGTACACGGATCGTTT 57.679 39.130 0.00 0.00 38.32 3.60
88 89 4.978083 AGTAATCAGTACACGGATCGTT 57.022 40.909 0.00 0.00 38.32 3.85
89 90 6.293845 GGATTAGTAATCAGTACACGGATCGT 60.294 42.308 21.56 0.00 39.15 3.73
90 91 6.072618 AGGATTAGTAATCAGTACACGGATCG 60.073 42.308 21.56 0.00 39.71 3.69
91 92 7.085116 CAGGATTAGTAATCAGTACACGGATC 58.915 42.308 21.56 3.07 39.71 3.36
92 93 6.550108 ACAGGATTAGTAATCAGTACACGGAT 59.450 38.462 21.56 0.00 39.71 4.18
93 94 5.889853 ACAGGATTAGTAATCAGTACACGGA 59.110 40.000 21.56 0.00 39.71 4.69
94 95 6.145338 ACAGGATTAGTAATCAGTACACGG 57.855 41.667 21.56 8.56 39.71 4.94
95 96 7.481642 AGAACAGGATTAGTAATCAGTACACG 58.518 38.462 21.56 6.55 39.71 4.49
96 97 9.303537 GAAGAACAGGATTAGTAATCAGTACAC 57.696 37.037 21.56 13.97 39.71 2.90
97 98 9.256228 AGAAGAACAGGATTAGTAATCAGTACA 57.744 33.333 21.56 0.00 39.71 2.90
98 99 9.738832 GAGAAGAACAGGATTAGTAATCAGTAC 57.261 37.037 21.56 6.92 39.71 2.73
99 100 8.622157 CGAGAAGAACAGGATTAGTAATCAGTA 58.378 37.037 21.56 0.00 39.71 2.74
100 101 7.484975 CGAGAAGAACAGGATTAGTAATCAGT 58.515 38.462 21.56 16.50 39.71 3.41
101 102 6.419413 GCGAGAAGAACAGGATTAGTAATCAG 59.581 42.308 21.56 15.96 39.71 2.90
102 103 6.127451 TGCGAGAAGAACAGGATTAGTAATCA 60.127 38.462 21.56 0.00 39.71 2.57
103 104 6.273825 TGCGAGAAGAACAGGATTAGTAATC 58.726 40.000 13.60 13.60 37.17 1.75
104 105 6.222038 TGCGAGAAGAACAGGATTAGTAAT 57.778 37.500 0.00 0.00 0.00 1.89
105 106 5.654603 TGCGAGAAGAACAGGATTAGTAA 57.345 39.130 0.00 0.00 0.00 2.24
106 107 5.408356 GTTGCGAGAAGAACAGGATTAGTA 58.592 41.667 0.00 0.00 0.00 1.82
107 108 4.246458 GTTGCGAGAAGAACAGGATTAGT 58.754 43.478 0.00 0.00 0.00 2.24
108 109 3.619038 GGTTGCGAGAAGAACAGGATTAG 59.381 47.826 0.00 0.00 0.00 1.73
109 110 3.596214 GGTTGCGAGAAGAACAGGATTA 58.404 45.455 0.00 0.00 0.00 1.75
110 111 2.427506 GGTTGCGAGAAGAACAGGATT 58.572 47.619 0.00 0.00 0.00 3.01
111 112 1.339151 GGGTTGCGAGAAGAACAGGAT 60.339 52.381 0.00 0.00 0.00 3.24
112 113 0.034896 GGGTTGCGAGAAGAACAGGA 59.965 55.000 0.00 0.00 0.00 3.86
113 114 0.035458 AGGGTTGCGAGAAGAACAGG 59.965 55.000 0.00 0.00 0.00 4.00
114 115 1.151668 CAGGGTTGCGAGAAGAACAG 58.848 55.000 0.00 0.00 0.00 3.16
115 116 0.884704 GCAGGGTTGCGAGAAGAACA 60.885 55.000 0.00 0.00 41.13 3.18
116 117 1.869690 GCAGGGTTGCGAGAAGAAC 59.130 57.895 0.00 0.00 41.13 3.01
117 118 4.379174 GCAGGGTTGCGAGAAGAA 57.621 55.556 0.00 0.00 41.13 2.52
140 141 2.704464 AAATCCCTACTACGGTTGCC 57.296 50.000 0.00 0.00 0.00 4.52
141 142 3.754850 ACAAAAATCCCTACTACGGTTGC 59.245 43.478 0.00 0.00 0.00 4.17
142 143 4.998672 TCACAAAAATCCCTACTACGGTTG 59.001 41.667 0.00 0.00 0.00 3.77
143 144 5.231702 TCACAAAAATCCCTACTACGGTT 57.768 39.130 0.00 0.00 0.00 4.44
144 145 4.895668 TCACAAAAATCCCTACTACGGT 57.104 40.909 0.00 0.00 0.00 4.83
145 146 4.814771 GGATCACAAAAATCCCTACTACGG 59.185 45.833 0.00 0.00 37.33 4.02
146 147 5.986004 GGATCACAAAAATCCCTACTACG 57.014 43.478 0.00 0.00 37.33 3.51
154 155 6.293626 CGACATCTATGGGATCACAAAAATCC 60.294 42.308 0.00 0.00 41.74 3.01
155 156 6.260936 ACGACATCTATGGGATCACAAAAATC 59.739 38.462 0.00 0.00 31.27 2.17
156 157 6.122277 ACGACATCTATGGGATCACAAAAAT 58.878 36.000 0.00 0.00 31.27 1.82
157 158 5.496556 ACGACATCTATGGGATCACAAAAA 58.503 37.500 0.00 0.00 31.27 1.94
158 159 5.097742 ACGACATCTATGGGATCACAAAA 57.902 39.130 0.00 0.00 31.27 2.44
159 160 4.753516 ACGACATCTATGGGATCACAAA 57.246 40.909 0.00 0.00 31.27 2.83
160 161 4.442893 GGAACGACATCTATGGGATCACAA 60.443 45.833 0.00 0.00 31.27 3.33
161 162 3.069586 GGAACGACATCTATGGGATCACA 59.930 47.826 0.00 0.00 31.27 3.58
162 163 3.069586 TGGAACGACATCTATGGGATCAC 59.930 47.826 0.00 0.00 31.27 3.06
163 164 3.069586 GTGGAACGACATCTATGGGATCA 59.930 47.826 0.00 0.00 31.27 2.92
164 165 3.069586 TGTGGAACGACATCTATGGGATC 59.930 47.826 0.00 0.00 42.39 3.36
165 166 3.038280 TGTGGAACGACATCTATGGGAT 58.962 45.455 0.00 0.00 42.39 3.85
166 167 2.167693 GTGTGGAACGACATCTATGGGA 59.832 50.000 0.00 0.00 42.39 4.37
167 168 2.550978 GTGTGGAACGACATCTATGGG 58.449 52.381 0.00 0.00 42.39 4.00
168 169 2.550978 GGTGTGGAACGACATCTATGG 58.449 52.381 0.00 0.00 42.39 2.74
169 170 2.159296 TCGGTGTGGAACGACATCTATG 60.159 50.000 0.00 0.00 42.39 2.23
170 171 2.097036 TCGGTGTGGAACGACATCTAT 58.903 47.619 0.00 0.00 42.39 1.98
171 172 1.536940 TCGGTGTGGAACGACATCTA 58.463 50.000 0.00 0.00 42.39 1.98
172 173 2.347630 TCGGTGTGGAACGACATCT 58.652 52.632 0.00 0.00 42.39 2.90
173 174 4.979204 TCGGTGTGGAACGACATC 57.021 55.556 0.00 0.00 42.39 3.06
177 178 2.101249 ACTTAAAGTCGGTGTGGAACGA 59.899 45.455 0.00 0.00 42.39 3.85
178 179 2.476821 ACTTAAAGTCGGTGTGGAACG 58.523 47.619 0.00 0.00 42.39 3.95
179 180 4.124970 AGAACTTAAAGTCGGTGTGGAAC 58.875 43.478 0.00 0.00 37.35 3.62
180 181 4.411256 AGAACTTAAAGTCGGTGTGGAA 57.589 40.909 0.00 0.00 0.00 3.53
181 182 4.411256 AAGAACTTAAAGTCGGTGTGGA 57.589 40.909 0.00 0.00 0.00 4.02
182 183 4.573201 TCAAAGAACTTAAAGTCGGTGTGG 59.427 41.667 0.00 0.00 0.00 4.17
183 184 5.064198 TGTCAAAGAACTTAAAGTCGGTGTG 59.936 40.000 0.00 0.00 0.00 3.82
184 185 5.180271 TGTCAAAGAACTTAAAGTCGGTGT 58.820 37.500 0.00 0.00 0.00 4.16
185 186 5.728351 TGTCAAAGAACTTAAAGTCGGTG 57.272 39.130 0.00 0.00 0.00 4.94
186 187 6.110707 TCTTGTCAAAGAACTTAAAGTCGGT 58.889 36.000 0.00 0.00 39.52 4.69
187 188 6.598753 TCTTGTCAAAGAACTTAAAGTCGG 57.401 37.500 0.00 0.00 39.52 4.79
212 213 9.085250 GTTTATTTTCCTTTGGTTTCGTTTACA 57.915 29.630 0.00 0.00 0.00 2.41
213 214 8.261229 CGTTTATTTTCCTTTGGTTTCGTTTAC 58.739 33.333 0.00 0.00 0.00 2.01
227 228 8.974408 GCAACTTTGTAAATCGTTTATTTTCCT 58.026 29.630 0.00 0.00 38.71 3.36
237 238 3.547214 CGGTGTGCAACTTTGTAAATCGT 60.547 43.478 0.00 0.00 38.04 3.73
259 260 8.730680 ACTTGTACATGAACTGACATAAATTCC 58.269 33.333 15.13 0.00 0.00 3.01
288 289 4.082463 ACGGAGAGAATCAGAGAAAGTGAC 60.082 45.833 0.00 0.00 37.82 3.67
290 291 4.448537 ACGGAGAGAATCAGAGAAAGTG 57.551 45.455 0.00 0.00 37.82 3.16
309 310 6.037062 TGGACATGTGCATATTCTCTTTTACG 59.963 38.462 16.89 0.00 0.00 3.18
334 342 2.738643 CGTGATAAGTGCGACCAAGGAT 60.739 50.000 0.00 0.00 0.00 3.24
351 359 1.077357 GGAGGAGAGAGAGGCGTGA 60.077 63.158 0.00 0.00 0.00 4.35
356 364 1.076339 AAGCGGGAGGAGAGAGAGG 60.076 63.158 0.00 0.00 0.00 3.69
512 531 8.956426 TCTAGGAAAATGCACCAATAAAAGTAG 58.044 33.333 0.00 0.00 0.00 2.57
514 533 7.451566 AGTCTAGGAAAATGCACCAATAAAAGT 59.548 33.333 0.00 0.00 0.00 2.66
515 534 7.830739 AGTCTAGGAAAATGCACCAATAAAAG 58.169 34.615 0.00 0.00 0.00 2.27
516 535 7.775053 AGTCTAGGAAAATGCACCAATAAAA 57.225 32.000 0.00 0.00 0.00 1.52
517 536 7.232534 ACAAGTCTAGGAAAATGCACCAATAAA 59.767 33.333 0.00 0.00 0.00 1.40
518 537 6.719370 ACAAGTCTAGGAAAATGCACCAATAA 59.281 34.615 0.00 0.00 0.00 1.40
519 538 6.245408 ACAAGTCTAGGAAAATGCACCAATA 58.755 36.000 0.00 0.00 0.00 1.90
520 539 5.079643 ACAAGTCTAGGAAAATGCACCAAT 58.920 37.500 0.00 0.00 0.00 3.16
540 559 8.924511 ATTAAGAGGAATCACAGAAAGAACAA 57.075 30.769 0.00 0.00 0.00 2.83
560 579 3.270877 CAAGAACACGGGAGGGATTAAG 58.729 50.000 0.00 0.00 36.77 1.85
888 912 1.018226 CGTGAGCTCCCTGAAGCAAG 61.018 60.000 12.15 0.00 45.00 4.01
970 994 0.681564 CTCCTGCCTACACCGACTCT 60.682 60.000 0.00 0.00 0.00 3.24
1337 1392 6.394345 AACAAAAGGATTGATACTCCCTCT 57.606 37.500 0.00 0.00 32.89 3.69
1484 1540 5.614308 CTCATACATGTGGACCATATGTGT 58.386 41.667 34.75 28.89 43.84 3.72
1486 1542 4.349048 AGCTCATACATGTGGACCATATGT 59.651 41.667 31.80 31.80 45.43 2.29
1491 1547 2.187100 TGAGCTCATACATGTGGACCA 58.813 47.619 13.74 0.00 0.00 4.02
1724 1843 7.307396 CCGACACATGCTACTCATTAAATAAGG 60.307 40.741 0.00 0.00 31.79 2.69
1959 2168 6.351456 GCAGTTAGAGACTATTCCCTCTGTTT 60.351 42.308 0.00 0.00 39.81 2.83
2211 2433 9.197694 GATGATATCAAGTACATGGTTGTAGTC 57.802 37.037 9.99 0.00 40.38 2.59
2278 2500 1.531602 AGTGGGCCTGCACCTTTTC 60.532 57.895 4.53 0.00 0.00 2.29
2295 2517 4.940046 AGTTTGCTTGATATCTGGTGTCAG 59.060 41.667 3.98 0.00 42.21 3.51
2382 2604 6.757010 TCTCTTATTGAGGCGATAAGTGTTTC 59.243 38.462 12.00 0.00 42.86 2.78
2407 2629 1.985116 GGTCCCGGAGTCAGCTCTT 60.985 63.158 0.73 0.00 41.38 2.85
2895 3123 5.348997 GTGAACTTAGTCTCACATAGCCAAC 59.651 44.000 16.72 0.00 41.35 3.77
2986 3214 9.401058 AGCTTAGTTTCACATAGCTAATTTGAT 57.599 29.630 0.00 0.00 36.04 2.57
3178 3406 3.245016 TGGTGTTGATCCTTGCTCAGAAT 60.245 43.478 0.00 0.00 0.00 2.40
3184 3412 1.547372 GCATTGGTGTTGATCCTTGCT 59.453 47.619 0.00 0.00 34.48 3.91
3206 3434 1.616725 GGAGGTGGCATCATTGGTTGA 60.617 52.381 0.00 0.00 39.12 3.18
3484 3712 3.969250 ATAAGTGGTGGTGGGCGCG 62.969 63.158 0.00 0.00 0.00 6.86
3488 3716 2.039746 TGACTTCATAAGTGGTGGTGGG 59.960 50.000 0.00 0.00 43.03 4.61
3532 3760 7.094592 GCTTTGTTTTAGCTTCACTAGAATCCT 60.095 37.037 0.00 0.00 35.74 3.24
3803 4299 2.305009 GGCAGCTTCCTTTGATGCTAT 58.695 47.619 0.00 0.00 46.83 2.97
3806 4302 1.252904 TGGGCAGCTTCCTTTGATGC 61.253 55.000 1.39 0.00 44.89 3.91
3937 4433 4.623002 TGCACAGTATAAACGAGTGACAA 58.377 39.130 0.00 0.00 38.19 3.18
4034 4530 3.840078 ACTGGAGCTTTGCCCAAAAATAT 59.160 39.130 0.00 0.00 30.91 1.28
4037 4533 1.494960 ACTGGAGCTTTGCCCAAAAA 58.505 45.000 0.00 0.00 30.91 1.94
4076 4573 7.327275 CAGAAGCTGGATAAGTATTCGATGTAC 59.673 40.741 0.00 0.00 32.22 2.90
4712 5210 2.164219 ACCAGCCATGAAAAGTAATGCG 59.836 45.455 0.00 0.00 0.00 4.73
4869 5701 6.980051 AATGTTCATCGGTTAAAGGACTAC 57.020 37.500 0.00 0.00 0.00 2.73
5078 5910 0.321210 ACGTGCCAACATTCATCCGA 60.321 50.000 0.00 0.00 0.00 4.55
5100 5932 0.902516 AACGCTTGAGCTCCTCCTCT 60.903 55.000 12.15 0.00 39.32 3.69
5388 6220 2.194271 GACACTTGCTACCGACATAGC 58.806 52.381 6.41 6.41 46.58 2.97
5408 6240 1.733402 TTTTGCCAAGCCTGTGGACG 61.733 55.000 2.92 0.00 41.65 4.79
5410 6242 1.398958 GGTTTTGCCAAGCCTGTGGA 61.399 55.000 2.92 0.00 41.65 4.02
5666 6498 2.555325 TGCTTCTTTCACCTCATTGCAG 59.445 45.455 0.00 0.00 0.00 4.41
5697 6529 4.766375 TCAGTCTTCGTTTTCTTTGGAGT 58.234 39.130 0.00 0.00 0.00 3.85
5737 6569 2.818751 TTGAAAAGACCTGGGTGTGT 57.181 45.000 0.00 0.00 0.00 3.72
5750 6582 0.614294 TACGCCGGGGATCTTGAAAA 59.386 50.000 27.23 0.00 0.00 2.29
5751 6583 0.177141 CTACGCCGGGGATCTTGAAA 59.823 55.000 27.23 0.00 0.00 2.69
5752 6584 0.974010 ACTACGCCGGGGATCTTGAA 60.974 55.000 27.23 0.41 0.00 2.69
5753 6585 0.974010 AACTACGCCGGGGATCTTGA 60.974 55.000 27.23 1.93 0.00 3.02
5754 6586 0.529992 GAACTACGCCGGGGATCTTG 60.530 60.000 27.23 11.73 0.00 3.02
5755 6587 1.683418 GGAACTACGCCGGGGATCTT 61.683 60.000 27.23 11.94 0.00 2.40
5756 6588 2.132352 GGAACTACGCCGGGGATCT 61.132 63.158 27.23 5.30 0.00 2.75
5757 6589 2.420466 GGAACTACGCCGGGGATC 59.580 66.667 27.23 16.07 0.00 3.36
5758 6590 3.159347 GGGAACTACGCCGGGGAT 61.159 66.667 27.23 11.98 0.00 3.85
5759 6591 4.700448 TGGGAACTACGCCGGGGA 62.700 66.667 27.23 7.99 0.00 4.81
5760 6592 4.462280 GTGGGAACTACGCCGGGG 62.462 72.222 18.33 18.33 0.00 5.73
5761 6593 3.697747 TGTGGGAACTACGCCGGG 61.698 66.667 2.18 0.00 0.00 5.73
5762 6594 2.433664 GTGTGGGAACTACGCCGG 60.434 66.667 0.00 0.00 0.00 6.13
5763 6595 2.025418 GTGTGTGGGAACTACGCCG 61.025 63.158 0.00 0.00 0.00 6.46
5764 6596 1.670083 GGTGTGTGGGAACTACGCC 60.670 63.158 0.00 0.00 39.99 5.68
5765 6597 1.670083 GGGTGTGTGGGAACTACGC 60.670 63.158 0.00 0.00 0.00 4.42
5766 6598 0.320421 CTGGGTGTGTGGGAACTACG 60.320 60.000 0.00 0.00 0.00 3.51
5767 6599 0.036306 CCTGGGTGTGTGGGAACTAC 59.964 60.000 0.00 0.00 0.00 2.73
5768 6600 0.400815 ACCTGGGTGTGTGGGAACTA 60.401 55.000 0.00 0.00 0.00 2.24
5769 6601 1.696314 ACCTGGGTGTGTGGGAACT 60.696 57.895 0.00 0.00 0.00 3.01
5770 6602 1.228154 GACCTGGGTGTGTGGGAAC 60.228 63.158 0.00 0.00 0.00 3.62
5771 6603 0.991355 AAGACCTGGGTGTGTGGGAA 60.991 55.000 0.00 0.00 0.00 3.97
5772 6604 1.385347 AAGACCTGGGTGTGTGGGA 60.385 57.895 0.00 0.00 0.00 4.37
5773 6605 1.073199 GAAGACCTGGGTGTGTGGG 59.927 63.158 0.00 0.00 0.00 4.61
5774 6606 0.035458 GAGAAGACCTGGGTGTGTGG 59.965 60.000 0.00 0.00 0.00 4.17
5775 6607 0.758734 TGAGAAGACCTGGGTGTGTG 59.241 55.000 0.00 0.00 0.00 3.82
5776 6608 1.417890 CTTGAGAAGACCTGGGTGTGT 59.582 52.381 0.00 0.00 0.00 3.72
5777 6609 1.694150 TCTTGAGAAGACCTGGGTGTG 59.306 52.381 0.00 0.00 31.20 3.82
5778 6610 2.103153 TCTTGAGAAGACCTGGGTGT 57.897 50.000 0.00 0.00 31.20 4.16
5779 6611 2.093235 GGATCTTGAGAAGACCTGGGTG 60.093 54.545 0.00 0.00 41.01 4.61
5780 6612 2.192263 GGATCTTGAGAAGACCTGGGT 58.808 52.381 0.00 0.00 41.01 4.51
5791 6623 1.543429 GGTTATGCCGGGGATCTTGAG 60.543 57.143 3.57 0.00 0.00 3.02
5806 6638 5.476091 TTGAATTGCCGGAAAAAGGTTAT 57.524 34.783 5.05 0.00 0.00 1.89
5829 6661 0.831307 GAACTATCTGCCCTCCGGTT 59.169 55.000 0.00 0.00 0.00 4.44
5841 6673 6.320164 TCCTCAGAACTAGAGCTTGAACTATC 59.680 42.308 0.00 0.00 0.00 2.08
5864 6696 5.397142 TCGTTTAGAGTTAACTTCCCTCC 57.603 43.478 10.02 0.00 0.00 4.30
5963 6795 3.502211 TCTTGCTTTTTCTTTAGCTCCGG 59.498 43.478 0.00 0.00 38.22 5.14
5965 6797 5.948992 TCTCTTGCTTTTTCTTTAGCTCC 57.051 39.130 0.00 0.00 38.22 4.70
6064 6897 5.175859 GTCAAGGACGTTATGGAAGATGAA 58.824 41.667 0.00 0.00 0.00 2.57
6333 7170 5.596836 TGCTGCATTTATTCCCCTAAAAG 57.403 39.130 0.00 0.00 0.00 2.27
6338 7175 5.065613 TCTAATGCTGCATTTATTCCCCT 57.934 39.130 30.35 7.96 35.54 4.79
6339 7176 5.789643 TTCTAATGCTGCATTTATTCCCC 57.210 39.130 30.35 0.00 35.54 4.81
6343 7180 9.798994 CTCTTTCTTTCTAATGCTGCATTTATT 57.201 29.630 30.35 11.98 35.54 1.40
6345 7182 8.565896 TCTCTTTCTTTCTAATGCTGCATTTA 57.434 30.769 30.35 17.49 35.54 1.40
6346 7183 7.458409 TCTCTTTCTTTCTAATGCTGCATTT 57.542 32.000 30.35 15.85 35.54 2.32
6348 7185 6.459848 GCATCTCTTTCTTTCTAATGCTGCAT 60.460 38.462 9.81 9.81 36.12 3.96
6351 7188 6.256686 GTGCATCTCTTTCTTTCTAATGCTG 58.743 40.000 0.00 0.00 38.96 4.41
6352 7189 5.356470 GGTGCATCTCTTTCTTTCTAATGCT 59.644 40.000 0.00 0.00 38.96 3.79
6353 7190 5.124457 TGGTGCATCTCTTTCTTTCTAATGC 59.876 40.000 0.00 0.00 38.73 3.56
6418 7277 6.491403 AGTTGAAAGGATGACAATTTACAGCT 59.509 34.615 0.00 0.00 0.00 4.24
6473 7332 4.038763 CACCAAGTCGCCCAGAGTATATAA 59.961 45.833 0.00 0.00 30.94 0.98
6474 7333 3.572682 CACCAAGTCGCCCAGAGTATATA 59.427 47.826 0.00 0.00 30.94 0.86
6475 7334 2.365617 CACCAAGTCGCCCAGAGTATAT 59.634 50.000 0.00 0.00 30.94 0.86
6480 7339 1.669115 CACACCAAGTCGCCCAGAG 60.669 63.158 0.00 0.00 0.00 3.35
6514 7373 3.002451 CGAATCTGGTACTAGGTCTCACG 59.998 52.174 6.38 0.95 0.00 4.35
6524 7383 0.898320 AGCAGCACGAATCTGGTACT 59.102 50.000 0.00 0.00 40.11 2.73
6537 7396 2.592574 GACCACAGCACAGCAGCA 60.593 61.111 0.00 0.00 36.85 4.41
6538 7397 3.720193 CGACCACAGCACAGCAGC 61.720 66.667 0.00 0.00 0.00 5.25
6551 7410 1.673168 ACGGTAGGTACAGATCGACC 58.327 55.000 5.97 6.42 35.83 4.79
6574 7446 0.817654 CTGACTATCCAGACGGTGCA 59.182 55.000 0.00 0.00 36.29 4.57
6597 7469 1.865248 GCGCTGCACATTGTTTTGAGT 60.865 47.619 0.00 0.00 0.00 3.41
6627 7499 5.420409 GGAGACGAAACAATTATCACTCCT 58.580 41.667 0.00 0.00 36.61 3.69
6645 7517 1.534729 AAAGAAATGGCACGGGAGAC 58.465 50.000 0.00 0.00 0.00 3.36
6649 7521 2.432444 TCTGTAAAGAAATGGCACGGG 58.568 47.619 0.00 0.00 0.00 5.28
6687 7559 7.272948 CGGGAAATACTTGCGATCTAGTAATAC 59.727 40.741 0.00 0.00 34.98 1.89
6689 7561 6.157211 CGGGAAATACTTGCGATCTAGTAAT 58.843 40.000 0.00 0.00 34.98 1.89
6690 7562 5.526115 CGGGAAATACTTGCGATCTAGTAA 58.474 41.667 0.00 0.00 34.98 2.24
6692 7564 3.799232 GCGGGAAATACTTGCGATCTAGT 60.799 47.826 0.00 0.00 33.12 2.57
6693 7565 2.731976 GCGGGAAATACTTGCGATCTAG 59.268 50.000 0.00 0.00 0.00 2.43
6716 7588 4.992688 TGTTTTTCACGAGCAAGACATTT 58.007 34.783 0.00 0.00 0.00 2.32
6719 7591 3.303066 CGATGTTTTTCACGAGCAAGACA 60.303 43.478 0.00 0.00 0.00 3.41
6720 7592 3.218398 CGATGTTTTTCACGAGCAAGAC 58.782 45.455 0.00 0.00 0.00 3.01
6721 7593 2.349438 GCGATGTTTTTCACGAGCAAGA 60.349 45.455 0.00 0.00 0.00 3.02
6724 7596 0.237235 GGCGATGTTTTTCACGAGCA 59.763 50.000 0.00 0.00 0.00 4.26
6725 7597 0.237235 TGGCGATGTTTTTCACGAGC 59.763 50.000 0.00 0.00 0.00 5.03
6726 7598 1.262950 TGTGGCGATGTTTTTCACGAG 59.737 47.619 0.00 0.00 0.00 4.18
6729 7601 2.483583 TGTGTGGCGATGTTTTTCAC 57.516 45.000 0.00 0.00 0.00 3.18
6730 7602 3.818210 ACTATGTGTGGCGATGTTTTTCA 59.182 39.130 0.00 0.00 0.00 2.69
6731 7603 4.403453 GACTATGTGTGGCGATGTTTTTC 58.597 43.478 0.00 0.00 0.00 2.29
6733 7605 2.747446 GGACTATGTGTGGCGATGTTTT 59.253 45.455 0.00 0.00 0.00 2.43
6734 7606 2.290008 TGGACTATGTGTGGCGATGTTT 60.290 45.455 0.00 0.00 0.00 2.83
6735 7607 1.277842 TGGACTATGTGTGGCGATGTT 59.722 47.619 0.00 0.00 0.00 2.71
6736 7608 0.901827 TGGACTATGTGTGGCGATGT 59.098 50.000 0.00 0.00 0.00 3.06
6737 7609 1.134699 AGTGGACTATGTGTGGCGATG 60.135 52.381 0.00 0.00 0.00 3.84
6738 7610 1.195115 AGTGGACTATGTGTGGCGAT 58.805 50.000 0.00 0.00 0.00 4.58
6739 7611 1.475280 GTAGTGGACTATGTGTGGCGA 59.525 52.381 0.00 0.00 0.00 5.54
6740 7612 1.476891 AGTAGTGGACTATGTGTGGCG 59.523 52.381 0.00 0.00 36.27 5.69
6745 7632 1.681793 CGGGGAGTAGTGGACTATGTG 59.318 57.143 0.00 0.00 39.06 3.21
6749 7636 1.076485 GGCGGGGAGTAGTGGACTA 60.076 63.158 0.00 0.00 39.06 2.59
6751 7638 1.833787 TTTGGCGGGGAGTAGTGGAC 61.834 60.000 0.00 0.00 0.00 4.02
6757 7644 0.699399 TGGAATTTTGGCGGGGAGTA 59.301 50.000 0.00 0.00 0.00 2.59
6785 7672 1.514443 GTGTGCTACGGCTCGAGTC 60.514 63.158 15.13 11.34 39.59 3.36
6795 7682 6.252228 GTCTTTACAATACGTAGGTGTGCTAC 59.748 42.308 19.71 11.32 0.00 3.58
6807 7694 4.441415 GGATGCTCTCGTCTTTACAATACG 59.559 45.833 0.00 0.00 37.96 3.06
6809 7696 5.854010 AGGATGCTCTCGTCTTTACAATA 57.146 39.130 0.00 0.00 0.00 1.90
6819 7706 4.270834 TGTTAGACTAAGGATGCTCTCGT 58.729 43.478 0.00 0.00 0.00 4.18
6820 7707 4.791411 GCTGTTAGACTAAGGATGCTCTCG 60.791 50.000 0.00 0.00 0.00 4.04
6821 7708 4.340950 AGCTGTTAGACTAAGGATGCTCTC 59.659 45.833 0.00 0.00 0.00 3.20
6822 7709 4.285863 AGCTGTTAGACTAAGGATGCTCT 58.714 43.478 0.00 0.00 0.00 4.09
6823 7710 4.664150 AGCTGTTAGACTAAGGATGCTC 57.336 45.455 0.00 0.00 0.00 4.26
6824 7711 4.440802 CGAAGCTGTTAGACTAAGGATGCT 60.441 45.833 0.00 0.98 0.00 3.79
6825 7712 3.799420 CGAAGCTGTTAGACTAAGGATGC 59.201 47.826 0.00 0.00 0.00 3.91
6846 7733 9.370126 CGAAATCCTTACTAAAATTAATCTGCG 57.630 33.333 0.00 0.00 0.00 5.18
6847 7734 9.170584 GCGAAATCCTTACTAAAATTAATCTGC 57.829 33.333 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.