Multiple sequence alignment - TraesCS2D01G219800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G219800 chr2D 100.000 4055 0 0 1 4055 186998635 186994581 0.000000e+00 7489
1 TraesCS2D01G219800 chr2D 93.750 192 10 2 452 642 573905456 573905266 1.840000e-73 287
2 TraesCS2D01G219800 chr2D 94.149 188 9 2 452 638 323517500 323517314 6.630000e-73 285
3 TraesCS2D01G219800 chr2A 94.579 3173 124 13 887 4055 199716027 199712899 0.000000e+00 4863
4 TraesCS2D01G219800 chr2A 89.145 304 17 6 75 378 199718877 199718590 8.280000e-97 364
5 TraesCS2D01G219800 chr2A 88.849 278 8 11 635 889 199716420 199716143 1.820000e-83 320
6 TraesCS2D01G219800 chr2A 93.048 187 11 2 451 636 778800562 778800747 5.160000e-69 272
7 TraesCS2D01G219800 chr2A 89.655 87 4 1 372 458 199716494 199716413 5.540000e-19 106
8 TraesCS2D01G219800 chr5D 76.622 740 154 17 1967 2700 500677586 500678312 1.370000e-104 390
9 TraesCS2D01G219800 chr7D 94.022 184 9 2 453 634 616769164 616769347 1.110000e-70 278
10 TraesCS2D01G219800 chr3D 94.444 180 9 1 456 635 10295071 10295249 3.990000e-70 276
11 TraesCS2D01G219800 chr1A 94.382 178 10 0 454 631 508278057 508278234 1.440000e-69 274
12 TraesCS2D01G219800 chr1A 94.382 178 10 0 454 631 508305383 508305560 1.440000e-69 274
13 TraesCS2D01G219800 chr1A 94.382 178 10 0 454 631 508310267 508310444 1.440000e-69 274
14 TraesCS2D01G219800 chr1D 93.443 183 10 1 449 631 35087875 35088055 1.860000e-68 270
15 TraesCS2D01G219800 chr2B 72.159 704 175 15 1986 2686 132510777 132510092 1.150000e-45 195
16 TraesCS2D01G219800 chr4B 71.530 706 173 21 1987 2686 281902033 281901350 9.020000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G219800 chr2D 186994581 186998635 4054 True 7489.00 7489 100.000 1 4055 1 chr2D.!!$R1 4054
1 TraesCS2D01G219800 chr2A 199712899 199718877 5978 True 1413.25 4863 90.557 75 4055 4 chr2A.!!$R1 3980
2 TraesCS2D01G219800 chr5D 500677586 500678312 726 False 390.00 390 76.622 1967 2700 1 chr5D.!!$F1 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.175531 GCCGGGAATGGTTTTGGATG 59.824 55.0 2.18 0.00 0.00 3.51 F
294 295 0.247894 CGTCCAAACCACAACACACG 60.248 55.0 0.00 0.00 0.00 4.49 F
950 3194 0.318445 CTTGGCAACTGCACTGCTTC 60.318 55.0 14.11 1.82 44.36 3.86 F
1889 4136 0.323629 GGTCCCAAGTCACGATCCAA 59.676 55.0 0.00 0.00 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1777 4024 0.246635 AGAATGTAGTGCCGCGAGTT 59.753 50.0 8.23 0.0 0.0 3.01 R
1872 4119 0.613260 CCTTGGATCGTGACTTGGGA 59.387 55.0 0.00 0.0 0.0 4.37 R
2361 4608 0.610232 ACCTGTGAGCCCAATTCAGC 60.610 55.0 0.00 0.0 0.0 4.26 R
3883 6132 0.798776 GAGGTTGTTGCATCCAGTCG 59.201 55.0 0.00 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.908687 CGATGCATCGGCCGGGAA 62.909 66.667 35.80 13.61 45.93 3.97
18 19 2.281761 GATGCATCGGCCGGGAAT 60.282 61.111 27.83 18.24 40.13 3.01
19 20 2.595463 ATGCATCGGCCGGGAATG 60.595 61.111 27.83 22.32 40.13 2.67
20 21 4.873810 TGCATCGGCCGGGAATGG 62.874 66.667 27.83 9.66 40.13 3.16
21 22 4.875713 GCATCGGCCGGGAATGGT 62.876 66.667 27.83 0.00 0.00 3.55
22 23 2.124320 CATCGGCCGGGAATGGTT 60.124 61.111 27.83 0.00 0.00 3.67
23 24 1.752694 CATCGGCCGGGAATGGTTT 60.753 57.895 27.83 0.00 0.00 3.27
24 25 1.000145 ATCGGCCGGGAATGGTTTT 60.000 52.632 27.83 0.00 0.00 2.43
25 26 1.319614 ATCGGCCGGGAATGGTTTTG 61.320 55.000 27.83 0.00 0.00 2.44
26 27 2.978000 GGCCGGGAATGGTTTTGG 59.022 61.111 2.18 0.00 0.00 3.28
27 28 1.608046 GGCCGGGAATGGTTTTGGA 60.608 57.895 2.18 0.00 0.00 3.53
28 29 0.975556 GGCCGGGAATGGTTTTGGAT 60.976 55.000 2.18 0.00 0.00 3.41
29 30 0.175531 GCCGGGAATGGTTTTGGATG 59.824 55.000 2.18 0.00 0.00 3.51
30 31 0.823460 CCGGGAATGGTTTTGGATGG 59.177 55.000 0.00 0.00 0.00 3.51
31 32 0.823460 CGGGAATGGTTTTGGATGGG 59.177 55.000 0.00 0.00 0.00 4.00
32 33 0.541392 GGGAATGGTTTTGGATGGGC 59.459 55.000 0.00 0.00 0.00 5.36
33 34 0.541392 GGAATGGTTTTGGATGGGCC 59.459 55.000 0.00 0.00 37.10 5.80
34 35 0.175531 GAATGGTTTTGGATGGGCCG 59.824 55.000 0.00 0.00 40.66 6.13
35 36 1.898330 AATGGTTTTGGATGGGCCGC 61.898 55.000 0.00 0.00 40.66 6.53
36 37 4.128388 GGTTTTGGATGGGCCGCG 62.128 66.667 0.00 0.00 40.66 6.46
37 38 4.128388 GTTTTGGATGGGCCGCGG 62.128 66.667 24.05 24.05 40.66 6.46
74 75 4.054825 CCCGCATGCGCCAAGTTT 62.055 61.111 34.00 0.00 38.24 2.66
75 76 2.806198 CCGCATGCGCCAAGTTTG 60.806 61.111 34.00 14.27 38.24 2.93
76 77 3.472298 CGCATGCGCCAAGTTTGC 61.472 61.111 29.09 3.71 33.11 3.68
82 83 4.705519 CGCCAAGTTTGCGCCCAG 62.706 66.667 8.51 0.00 46.01 4.45
83 84 3.605664 GCCAAGTTTGCGCCCAGT 61.606 61.111 4.18 0.00 0.00 4.00
84 85 3.128375 CCAAGTTTGCGCCCAGTT 58.872 55.556 4.18 0.00 0.00 3.16
85 86 1.441311 CCAAGTTTGCGCCCAGTTT 59.559 52.632 4.18 0.00 0.00 2.66
86 87 0.671251 CCAAGTTTGCGCCCAGTTTA 59.329 50.000 4.18 0.00 0.00 2.01
87 88 1.601914 CCAAGTTTGCGCCCAGTTTAC 60.602 52.381 4.18 0.00 0.00 2.01
88 89 0.309612 AAGTTTGCGCCCAGTTTACG 59.690 50.000 4.18 0.00 0.00 3.18
89 90 1.081708 GTTTGCGCCCAGTTTACGG 60.082 57.895 4.18 0.00 0.00 4.02
108 109 1.342082 GGATCACACGAACACGTCCG 61.342 60.000 0.00 0.00 38.21 4.79
128 129 2.034999 GACCGGTGGGGAATTGCA 59.965 61.111 14.63 0.00 39.97 4.08
147 148 2.546778 CATTGGATGGCTTGCATGTTC 58.453 47.619 1.14 0.00 0.00 3.18
175 176 1.053424 TAGGTCTGGACTTTTGCGGT 58.947 50.000 0.67 0.00 0.00 5.68
194 195 2.550208 GGTCAGTTTGATGGTCCTCGTT 60.550 50.000 0.00 0.00 0.00 3.85
250 251 5.385198 TGGTCAAAGATGCCTTAAACTCTT 58.615 37.500 0.00 0.00 31.15 2.85
255 256 3.350833 AGATGCCTTAAACTCTTGCCTG 58.649 45.455 0.00 0.00 0.00 4.85
258 259 1.177401 CCTTAAACTCTTGCCTGGCC 58.823 55.000 17.53 0.00 0.00 5.36
260 261 2.450476 CTTAAACTCTTGCCTGGCCAT 58.550 47.619 17.53 0.00 0.00 4.40
279 280 4.542735 CCATTTTTCTACACCAAACGTCC 58.457 43.478 0.00 0.00 0.00 4.79
287 288 0.811915 CACCAAACGTCCAAACCACA 59.188 50.000 0.00 0.00 0.00 4.17
293 294 0.806241 ACGTCCAAACCACAACACAC 59.194 50.000 0.00 0.00 0.00 3.82
294 295 0.247894 CGTCCAAACCACAACACACG 60.248 55.000 0.00 0.00 0.00 4.49
295 296 1.088306 GTCCAAACCACAACACACGA 58.912 50.000 0.00 0.00 0.00 4.35
296 297 1.469308 GTCCAAACCACAACACACGAA 59.531 47.619 0.00 0.00 0.00 3.85
297 298 2.098443 GTCCAAACCACAACACACGAAT 59.902 45.455 0.00 0.00 0.00 3.34
298 299 2.755655 TCCAAACCACAACACACGAATT 59.244 40.909 0.00 0.00 0.00 2.17
299 300 3.112580 CCAAACCACAACACACGAATTC 58.887 45.455 0.00 0.00 0.00 2.17
300 301 3.428180 CCAAACCACAACACACGAATTCA 60.428 43.478 6.22 0.00 0.00 2.57
301 302 4.169508 CAAACCACAACACACGAATTCAA 58.830 39.130 6.22 0.00 0.00 2.69
302 303 3.414549 ACCACAACACACGAATTCAAC 57.585 42.857 6.22 0.00 0.00 3.18
303 304 2.750166 ACCACAACACACGAATTCAACA 59.250 40.909 6.22 0.00 0.00 3.33
304 305 3.380004 ACCACAACACACGAATTCAACAT 59.620 39.130 6.22 0.00 0.00 2.71
305 306 3.730215 CCACAACACACGAATTCAACATG 59.270 43.478 6.22 0.00 0.00 3.21
335 336 1.078759 CTCAGCGACCGCAAACTAGG 61.079 60.000 16.97 0.00 44.88 3.02
377 2479 4.688021 CTTGACTTGGTAGCTGGTATCTC 58.312 47.826 0.00 0.00 0.00 2.75
406 2508 3.878086 TTCGTCTTGCTTGTTCACATC 57.122 42.857 0.00 0.00 0.00 3.06
407 2509 2.832563 TCGTCTTGCTTGTTCACATCA 58.167 42.857 0.00 0.00 0.00 3.07
408 2510 2.543848 TCGTCTTGCTTGTTCACATCAC 59.456 45.455 0.00 0.00 0.00 3.06
409 2511 2.287644 CGTCTTGCTTGTTCACATCACA 59.712 45.455 0.00 0.00 0.00 3.58
410 2512 3.058708 CGTCTTGCTTGTTCACATCACAT 60.059 43.478 0.00 0.00 0.00 3.21
427 2529 4.923710 TGCATCGATCGCGTCCCG 62.924 66.667 11.09 8.61 38.98 5.14
440 2542 1.742750 GCGTCCCGAGAAAGGCTTTAT 60.743 52.381 13.37 10.13 0.00 1.40
450 2552 3.197983 AGAAAGGCTTTATGCGGAGTAGT 59.802 43.478 13.37 0.00 44.05 2.73
451 2553 3.629142 AAGGCTTTATGCGGAGTAGTT 57.371 42.857 0.00 0.00 44.05 2.24
452 2554 3.629142 AGGCTTTATGCGGAGTAGTTT 57.371 42.857 0.00 0.00 44.05 2.66
453 2555 3.951663 AGGCTTTATGCGGAGTAGTTTT 58.048 40.909 0.00 0.00 44.05 2.43
454 2556 5.093849 AGGCTTTATGCGGAGTAGTTTTA 57.906 39.130 0.00 0.00 44.05 1.52
455 2557 5.681639 AGGCTTTATGCGGAGTAGTTTTAT 58.318 37.500 0.00 0.00 44.05 1.40
456 2558 6.120220 AGGCTTTATGCGGAGTAGTTTTATT 58.880 36.000 0.00 0.00 44.05 1.40
457 2559 6.602009 AGGCTTTATGCGGAGTAGTTTTATTT 59.398 34.615 0.00 0.00 44.05 1.40
458 2560 6.691388 GGCTTTATGCGGAGTAGTTTTATTTG 59.309 38.462 0.00 0.00 44.05 2.32
459 2561 6.691388 GCTTTATGCGGAGTAGTTTTATTTGG 59.309 38.462 0.00 0.00 0.00 3.28
460 2562 6.687081 TTATGCGGAGTAGTTTTATTTGGG 57.313 37.500 0.00 0.00 0.00 4.12
461 2563 4.289238 TGCGGAGTAGTTTTATTTGGGA 57.711 40.909 0.00 0.00 0.00 4.37
462 2564 4.258543 TGCGGAGTAGTTTTATTTGGGAG 58.741 43.478 0.00 0.00 0.00 4.30
463 2565 4.259356 GCGGAGTAGTTTTATTTGGGAGT 58.741 43.478 0.00 0.00 0.00 3.85
464 2566 5.046448 TGCGGAGTAGTTTTATTTGGGAGTA 60.046 40.000 0.00 0.00 0.00 2.59
465 2567 6.053650 GCGGAGTAGTTTTATTTGGGAGTAT 58.946 40.000 0.00 0.00 0.00 2.12
466 2568 6.202379 GCGGAGTAGTTTTATTTGGGAGTATC 59.798 42.308 0.00 0.00 0.00 2.24
467 2569 7.498443 CGGAGTAGTTTTATTTGGGAGTATCT 58.502 38.462 0.00 0.00 33.73 1.98
468 2570 8.636213 CGGAGTAGTTTTATTTGGGAGTATCTA 58.364 37.037 0.00 0.00 33.73 1.98
498 2600 8.420374 TCATTTAGATGAGACGTAATTTGGTC 57.580 34.615 0.00 1.46 37.37 4.02
499 2601 8.258007 TCATTTAGATGAGACGTAATTTGGTCT 58.742 33.333 9.96 9.96 45.71 3.85
507 2609 4.935808 AGACGTAATTTGGTCTCATTCACC 59.064 41.667 5.52 0.00 39.18 4.02
508 2610 4.906618 ACGTAATTTGGTCTCATTCACCT 58.093 39.130 0.00 0.00 34.66 4.00
509 2611 4.695455 ACGTAATTTGGTCTCATTCACCTG 59.305 41.667 0.00 0.00 34.66 4.00
510 2612 4.935205 CGTAATTTGGTCTCATTCACCTGA 59.065 41.667 0.00 0.00 34.66 3.86
511 2613 5.411361 CGTAATTTGGTCTCATTCACCTGAA 59.589 40.000 0.00 0.00 38.56 3.02
512 2614 6.072728 CGTAATTTGGTCTCATTCACCTGAAA 60.073 38.462 0.00 0.00 37.61 2.69
513 2615 6.729690 AATTTGGTCTCATTCACCTGAAAA 57.270 33.333 0.00 0.00 37.61 2.29
514 2616 6.729690 ATTTGGTCTCATTCACCTGAAAAA 57.270 33.333 0.00 0.00 37.61 1.94
515 2617 5.514274 TTGGTCTCATTCACCTGAAAAAC 57.486 39.130 0.00 0.00 37.61 2.43
516 2618 4.531854 TGGTCTCATTCACCTGAAAAACA 58.468 39.130 0.00 0.00 37.61 2.83
517 2619 4.952957 TGGTCTCATTCACCTGAAAAACAA 59.047 37.500 0.00 0.00 37.61 2.83
518 2620 5.067674 TGGTCTCATTCACCTGAAAAACAAG 59.932 40.000 0.00 0.00 37.61 3.16
519 2621 5.299279 GGTCTCATTCACCTGAAAAACAAGA 59.701 40.000 0.00 0.00 37.61 3.02
520 2622 6.183360 GGTCTCATTCACCTGAAAAACAAGAA 60.183 38.462 0.00 0.00 37.61 2.52
521 2623 6.693113 GTCTCATTCACCTGAAAAACAAGAAC 59.307 38.462 0.00 0.00 37.61 3.01
522 2624 5.577835 TCATTCACCTGAAAAACAAGAACG 58.422 37.500 0.00 0.00 37.61 3.95
523 2625 4.364415 TTCACCTGAAAAACAAGAACGG 57.636 40.909 0.00 0.00 0.00 4.44
524 2626 3.611970 TCACCTGAAAAACAAGAACGGA 58.388 40.909 0.00 0.00 0.00 4.69
525 2627 4.204012 TCACCTGAAAAACAAGAACGGAT 58.796 39.130 0.00 0.00 0.00 4.18
526 2628 5.369833 TCACCTGAAAAACAAGAACGGATA 58.630 37.500 0.00 0.00 0.00 2.59
527 2629 5.237779 TCACCTGAAAAACAAGAACGGATAC 59.762 40.000 0.00 0.00 0.00 2.24
528 2630 5.008217 CACCTGAAAAACAAGAACGGATACA 59.992 40.000 0.00 0.00 0.00 2.29
529 2631 5.591067 ACCTGAAAAACAAGAACGGATACAA 59.409 36.000 0.00 0.00 0.00 2.41
530 2632 5.912955 CCTGAAAAACAAGAACGGATACAAC 59.087 40.000 0.00 0.00 0.00 3.32
531 2633 5.823353 TGAAAAACAAGAACGGATACAACC 58.177 37.500 0.00 0.00 0.00 3.77
532 2634 4.841443 AAAACAAGAACGGATACAACCC 57.159 40.909 0.00 0.00 0.00 4.11
533 2635 3.495434 AACAAGAACGGATACAACCCA 57.505 42.857 0.00 0.00 0.00 4.51
534 2636 3.713826 ACAAGAACGGATACAACCCAT 57.286 42.857 0.00 0.00 0.00 4.00
535 2637 4.829872 ACAAGAACGGATACAACCCATA 57.170 40.909 0.00 0.00 0.00 2.74
536 2638 5.367945 ACAAGAACGGATACAACCCATAT 57.632 39.130 0.00 0.00 0.00 1.78
537 2639 5.365619 ACAAGAACGGATACAACCCATATC 58.634 41.667 0.00 0.00 0.00 1.63
538 2640 5.104693 ACAAGAACGGATACAACCCATATCA 60.105 40.000 0.00 0.00 31.69 2.15
539 2641 5.215252 AGAACGGATACAACCCATATCAG 57.785 43.478 0.00 0.00 31.69 2.90
540 2642 3.402628 ACGGATACAACCCATATCAGC 57.597 47.619 0.00 0.00 31.69 4.26
541 2643 2.703536 ACGGATACAACCCATATCAGCA 59.296 45.455 0.00 0.00 31.69 4.41
542 2644 3.067106 CGGATACAACCCATATCAGCAC 58.933 50.000 0.00 0.00 31.69 4.40
543 2645 3.494223 CGGATACAACCCATATCAGCACA 60.494 47.826 0.00 0.00 31.69 4.57
544 2646 3.815401 GGATACAACCCATATCAGCACAC 59.185 47.826 0.00 0.00 31.69 3.82
545 2647 2.877097 ACAACCCATATCAGCACACA 57.123 45.000 0.00 0.00 0.00 3.72
546 2648 2.436417 ACAACCCATATCAGCACACAC 58.564 47.619 0.00 0.00 0.00 3.82
547 2649 1.398041 CAACCCATATCAGCACACACG 59.602 52.381 0.00 0.00 0.00 4.49
548 2650 0.744414 ACCCATATCAGCACACACGC 60.744 55.000 0.00 0.00 0.00 5.34
549 2651 0.744057 CCCATATCAGCACACACGCA 60.744 55.000 0.00 0.00 0.00 5.24
550 2652 1.302366 CCATATCAGCACACACGCAT 58.698 50.000 0.00 0.00 0.00 4.73
551 2653 1.262417 CCATATCAGCACACACGCATC 59.738 52.381 0.00 0.00 0.00 3.91
552 2654 2.207590 CATATCAGCACACACGCATCT 58.792 47.619 0.00 0.00 0.00 2.90
553 2655 2.385013 TATCAGCACACACGCATCTT 57.615 45.000 0.00 0.00 0.00 2.40
554 2656 2.385013 ATCAGCACACACGCATCTTA 57.615 45.000 0.00 0.00 0.00 2.10
555 2657 2.385013 TCAGCACACACGCATCTTAT 57.615 45.000 0.00 0.00 0.00 1.73
556 2658 3.518634 TCAGCACACACGCATCTTATA 57.481 42.857 0.00 0.00 0.00 0.98
557 2659 3.447742 TCAGCACACACGCATCTTATAG 58.552 45.455 0.00 0.00 0.00 1.31
558 2660 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
559 2661 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
560 2662 2.545526 GCACACACGCATCTTATAGCAT 59.454 45.455 0.00 0.00 0.00 3.79
561 2663 3.363378 GCACACACGCATCTTATAGCATC 60.363 47.826 0.00 0.00 0.00 3.91
562 2664 3.803778 CACACACGCATCTTATAGCATCA 59.196 43.478 0.00 0.00 0.00 3.07
563 2665 3.804325 ACACACGCATCTTATAGCATCAC 59.196 43.478 0.00 0.00 0.00 3.06
564 2666 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
565 2667 4.450080 CACACGCATCTTATAGCATCACAT 59.550 41.667 0.00 0.00 0.00 3.21
566 2668 5.049886 CACACGCATCTTATAGCATCACATT 60.050 40.000 0.00 0.00 0.00 2.71
567 2669 5.178252 ACACGCATCTTATAGCATCACATTC 59.822 40.000 0.00 0.00 0.00 2.67
568 2670 5.178067 CACGCATCTTATAGCATCACATTCA 59.822 40.000 0.00 0.00 0.00 2.57
569 2671 5.759763 ACGCATCTTATAGCATCACATTCAA 59.240 36.000 0.00 0.00 0.00 2.69
570 2672 6.429078 ACGCATCTTATAGCATCACATTCAAT 59.571 34.615 0.00 0.00 0.00 2.57
571 2673 6.741358 CGCATCTTATAGCATCACATTCAATG 59.259 38.462 0.00 0.00 0.00 2.82
572 2674 7.027760 GCATCTTATAGCATCACATTCAATGG 58.972 38.462 1.58 0.00 33.60 3.16
573 2675 6.564709 TCTTATAGCATCACATTCAATGGC 57.435 37.500 1.58 0.00 33.60 4.40
574 2676 6.301486 TCTTATAGCATCACATTCAATGGCT 58.699 36.000 1.58 3.32 33.60 4.75
575 2677 7.452562 TCTTATAGCATCACATTCAATGGCTA 58.547 34.615 1.58 5.51 33.60 3.93
576 2678 8.105197 TCTTATAGCATCACATTCAATGGCTAT 58.895 33.333 17.71 17.71 32.32 2.97
577 2679 9.387257 CTTATAGCATCACATTCAATGGCTATA 57.613 33.333 16.27 16.27 31.20 1.31
578 2680 9.737844 TTATAGCATCACATTCAATGGCTATAA 57.262 29.630 22.35 22.35 35.32 0.98
579 2681 6.964807 AGCATCACATTCAATGGCTATAAA 57.035 33.333 1.58 0.00 33.60 1.40
580 2682 7.350744 AGCATCACATTCAATGGCTATAAAA 57.649 32.000 1.58 0.00 33.60 1.52
581 2683 7.431249 AGCATCACATTCAATGGCTATAAAAG 58.569 34.615 1.58 0.00 33.60 2.27
582 2684 6.643770 GCATCACATTCAATGGCTATAAAAGG 59.356 38.462 1.58 0.00 33.60 3.11
583 2685 7.685155 GCATCACATTCAATGGCTATAAAAGGT 60.685 37.037 1.58 0.00 33.60 3.50
584 2686 7.099266 TCACATTCAATGGCTATAAAAGGTG 57.901 36.000 12.77 12.77 33.60 4.00
585 2687 6.889177 TCACATTCAATGGCTATAAAAGGTGA 59.111 34.615 15.82 15.82 33.60 4.02
586 2688 7.395772 TCACATTCAATGGCTATAAAAGGTGAA 59.604 33.333 16.82 8.19 33.60 3.18
587 2689 8.199449 CACATTCAATGGCTATAAAAGGTGAAT 58.801 33.333 13.37 7.60 35.43 2.57
588 2690 8.583810 CATTCAATGGCTATAAAAGGTGAATG 57.416 34.615 14.56 14.56 42.48 2.67
589 2691 7.953005 TTCAATGGCTATAAAAGGTGAATGA 57.047 32.000 0.00 0.00 0.00 2.57
590 2692 7.572523 TCAATGGCTATAAAAGGTGAATGAG 57.427 36.000 0.00 0.00 0.00 2.90
591 2693 7.345691 TCAATGGCTATAAAAGGTGAATGAGA 58.654 34.615 0.00 0.00 0.00 3.27
592 2694 7.283127 TCAATGGCTATAAAAGGTGAATGAGAC 59.717 37.037 0.00 0.00 0.00 3.36
593 2695 5.437060 TGGCTATAAAAGGTGAATGAGACC 58.563 41.667 0.00 0.00 0.00 3.85
594 2696 5.045213 TGGCTATAAAAGGTGAATGAGACCA 60.045 40.000 0.00 0.00 35.76 4.02
595 2697 5.885912 GGCTATAAAAGGTGAATGAGACCAA 59.114 40.000 0.00 0.00 35.76 3.67
596 2698 6.377146 GGCTATAAAAGGTGAATGAGACCAAA 59.623 38.462 0.00 0.00 35.76 3.28
597 2699 7.068716 GGCTATAAAAGGTGAATGAGACCAAAT 59.931 37.037 0.00 0.00 35.76 2.32
598 2700 8.470002 GCTATAAAAGGTGAATGAGACCAAATT 58.530 33.333 0.00 0.00 35.76 1.82
603 2705 9.710900 AAAAGGTGAATGAGACCAAATTAAATC 57.289 29.630 0.00 0.00 35.76 2.17
604 2706 8.655935 AAGGTGAATGAGACCAAATTAAATCT 57.344 30.769 0.00 0.00 35.76 2.40
605 2707 8.286191 AGGTGAATGAGACCAAATTAAATCTC 57.714 34.615 0.00 6.03 38.46 2.75
631 2733 9.941664 CATATAAATGAGTTCTAGCAAAACTGG 57.058 33.333 0.32 0.00 37.10 4.00
632 2734 9.686683 ATATAAATGAGTTCTAGCAAAACTGGT 57.313 29.630 0.32 0.00 37.10 4.00
633 2735 6.715347 AAATGAGTTCTAGCAAAACTGGTT 57.285 33.333 0.32 0.00 37.10 3.67
663 2765 4.349365 TCTTTCTTTTGGCCGGGAATTAT 58.651 39.130 2.18 0.00 0.00 1.28
718 2830 2.681848 CTGCTTGACTTGGGCTATCTTG 59.318 50.000 0.00 0.00 0.00 3.02
754 2866 3.201290 ACCTCGTTGTCGTCGTATAGAT 58.799 45.455 0.00 0.00 38.33 1.98
756 2868 3.966844 CCTCGTTGTCGTCGTATAGATTG 59.033 47.826 0.00 0.00 38.33 2.67
791 2903 1.243902 TGCGACCCAACAAGGAAATC 58.756 50.000 0.00 0.00 41.22 2.17
802 2921 6.149474 CCCAACAAGGAAATCAGTACTAACAG 59.851 42.308 0.00 0.00 41.22 3.16
810 2929 3.826236 TCAGTACTAACAGACAGCGAC 57.174 47.619 0.00 0.00 0.00 5.19
872 2997 0.729140 GACACGCGGCAAGGAAATTG 60.729 55.000 12.47 0.00 42.20 2.32
891 3134 0.798776 GCAGACAGCAATGCGTACTT 59.201 50.000 0.00 0.00 44.79 2.24
900 3143 2.027688 GCAATGCGTACTTCAGTCGTAC 59.972 50.000 0.00 0.00 35.15 3.67
949 3193 1.039233 ACTTGGCAACTGCACTGCTT 61.039 50.000 14.11 0.00 44.36 3.91
950 3194 0.318445 CTTGGCAACTGCACTGCTTC 60.318 55.000 14.11 1.82 44.36 3.86
951 3195 0.752743 TTGGCAACTGCACTGCTTCT 60.753 50.000 14.11 0.00 44.36 2.85
952 3196 0.752743 TGGCAACTGCACTGCTTCTT 60.753 50.000 14.11 0.00 44.36 2.52
976 3220 1.369625 CATCGGCACTTGTAGGGAAC 58.630 55.000 0.00 0.00 0.00 3.62
1048 3292 0.914644 CCTTCTCTTCCATGGCCTCA 59.085 55.000 6.96 0.00 0.00 3.86
1049 3293 1.493871 CCTTCTCTTCCATGGCCTCAT 59.506 52.381 6.96 0.00 0.00 2.90
1050 3294 2.486907 CCTTCTCTTCCATGGCCTCATC 60.487 54.545 6.96 0.00 0.00 2.92
1165 3409 3.584052 CTACGGACGGCCTCCTCG 61.584 72.222 5.33 10.36 36.80 4.63
1302 3546 1.823295 CATCCTCACCACCTACCCG 59.177 63.158 0.00 0.00 0.00 5.28
1358 3602 2.684843 CCAGCAGCAACTTCTCCGC 61.685 63.158 0.00 0.00 0.00 5.54
1429 3673 2.042831 GCCAGCAACCGCATCTTCT 61.043 57.895 0.00 0.00 42.27 2.85
1558 3805 2.697250 CTACGACGACGATGGCGAGG 62.697 65.000 15.32 2.53 42.66 4.63
1559 3806 4.907034 CGACGACGATGGCGAGGG 62.907 72.222 0.00 0.00 42.66 4.30
1563 3810 4.933064 GACGATGGCGAGGGCGAG 62.933 72.222 0.00 0.00 41.24 5.03
1565 3812 4.207281 CGATGGCGAGGGCGAGAA 62.207 66.667 0.00 0.00 41.24 2.87
1566 3813 2.586357 GATGGCGAGGGCGAGAAC 60.586 66.667 0.00 0.00 41.24 3.01
1567 3814 4.514577 ATGGCGAGGGCGAGAACG 62.515 66.667 0.00 0.00 41.24 3.95
1582 3829 2.862674 GAACGGCGGCACCTTCCATA 62.863 60.000 13.24 0.00 35.61 2.74
1709 3956 2.125350 GCCCCTCGTCTCTGCAAG 60.125 66.667 0.00 0.00 0.00 4.01
1749 3996 1.100463 TAACGGAGCCGGCGTACATA 61.100 55.000 23.20 10.49 44.69 2.29
1764 4011 1.834378 CATAGGCCTCTCCTCCGCA 60.834 63.158 9.68 0.00 43.20 5.69
1800 4047 1.429423 GCGGCACTACATTCTTGGC 59.571 57.895 0.00 0.00 0.00 4.52
1872 4119 0.886490 CAAAGCTGCCTCGTCTTGGT 60.886 55.000 0.00 0.00 0.00 3.67
1889 4136 0.323629 GGTCCCAAGTCACGATCCAA 59.676 55.000 0.00 0.00 0.00 3.53
1892 4139 1.026718 CCCAAGTCACGATCCAAGGC 61.027 60.000 0.00 0.00 0.00 4.35
1904 4151 3.518068 CAAGGCCCCGGAAATCGC 61.518 66.667 0.73 0.00 37.59 4.58
1917 4164 0.390209 AAATCGCTGTGCCAATTGCC 60.390 50.000 0.00 0.00 40.16 4.52
1950 4197 4.803426 CTGGCTCTCGGCGTGGTC 62.803 72.222 6.85 0.76 42.94 4.02
2133 4380 1.656652 AAGGAATGCTTCGGACATCG 58.343 50.000 0.00 0.00 40.90 3.84
2238 4485 4.344865 ATCCGGCACCGCAACCTT 62.345 61.111 2.83 0.00 38.24 3.50
2343 4590 2.494445 CACTGCTATGACGGCGGA 59.506 61.111 13.24 0.00 39.18 5.54
2352 4599 2.811317 GACGGCGGAGACAAGCAG 60.811 66.667 13.24 0.00 27.25 4.24
2355 4602 4.704833 GGCGGAGACAAGCAGGCA 62.705 66.667 0.00 0.00 31.66 4.75
2356 4603 3.123620 GCGGAGACAAGCAGGCAG 61.124 66.667 0.00 0.00 0.00 4.85
2361 4608 1.085091 GAGACAAGCAGGCAGTGATG 58.915 55.000 0.00 0.00 0.00 3.07
2524 4771 2.035442 GGTGACTTTGGCCTCTCGC 61.035 63.158 3.32 0.00 0.00 5.03
2634 4881 0.733150 CGTCGCCTCTCACAGATGTA 59.267 55.000 0.00 0.00 0.00 2.29
2700 4947 0.030908 CTATCAGGGAAGACGACGCC 59.969 60.000 0.00 0.00 0.00 5.68
2701 4948 1.721664 TATCAGGGAAGACGACGCCG 61.722 60.000 0.00 0.00 42.50 6.46
2724 4971 4.755266 AGGCGATAGTATTCTGTTGGTT 57.245 40.909 0.00 0.00 39.35 3.67
2763 5010 2.187946 CATGGCGGGACACTCCTC 59.812 66.667 0.00 0.00 36.57 3.71
2775 5022 1.313772 CACTCCTCGAGACGATGGAT 58.686 55.000 15.71 0.00 34.60 3.41
2788 5035 1.399440 CGATGGATCCAACACTGCAAG 59.601 52.381 20.67 0.00 42.29 4.01
2810 5057 2.156917 TGACTACAATGTCGACGAGGT 58.843 47.619 11.62 10.72 39.64 3.85
2811 5058 3.337358 TGACTACAATGTCGACGAGGTA 58.663 45.455 11.62 11.28 39.64 3.08
2850 5097 3.046087 CTGCTGTGCTCACACCCG 61.046 66.667 0.00 0.00 46.86 5.28
2881 5128 1.614903 CAAGGCCAAGAATGCAACAGA 59.385 47.619 5.01 0.00 0.00 3.41
2949 5196 1.690283 CGCATCTGAGCTTCGGTGTG 61.690 60.000 0.00 0.00 0.00 3.82
2969 5216 4.458989 TGTGCTAGCCCTAATGAAAAACAG 59.541 41.667 13.29 0.00 0.00 3.16
3002 5249 2.289010 CGCATGTACTGGCATATCCTCA 60.289 50.000 9.44 0.00 35.26 3.86
3015 5262 4.213694 GCATATCCTCAATCTTCAGTGCTG 59.786 45.833 0.00 0.00 0.00 4.41
3080 5327 1.922135 GACGACATGTGCCGGCATTT 61.922 55.000 35.23 20.60 33.27 2.32
3081 5328 1.226379 CGACATGTGCCGGCATTTC 60.226 57.895 35.23 23.33 0.00 2.17
3082 5329 1.647545 CGACATGTGCCGGCATTTCT 61.648 55.000 35.23 16.08 0.00 2.52
3083 5330 0.527565 GACATGTGCCGGCATTTCTT 59.472 50.000 35.23 16.43 0.00 2.52
3084 5331 0.244450 ACATGTGCCGGCATTTCTTG 59.756 50.000 35.23 27.16 0.00 3.02
3085 5332 0.244450 CATGTGCCGGCATTTCTTGT 59.756 50.000 35.23 10.73 0.00 3.16
3086 5333 0.244450 ATGTGCCGGCATTTCTTGTG 59.756 50.000 35.23 0.00 0.00 3.33
3087 5334 1.734117 GTGCCGGCATTTCTTGTGC 60.734 57.895 35.23 12.77 41.78 4.57
3088 5335 1.902918 TGCCGGCATTTCTTGTGCT 60.903 52.632 29.03 0.00 42.16 4.40
3089 5336 1.290009 GCCGGCATTTCTTGTGCTT 59.710 52.632 24.80 0.00 42.16 3.91
3090 5337 1.010419 GCCGGCATTTCTTGTGCTTG 61.010 55.000 24.80 0.00 42.16 4.01
3091 5338 0.597568 CCGGCATTTCTTGTGCTTGA 59.402 50.000 0.00 0.00 42.16 3.02
3092 5339 1.666888 CCGGCATTTCTTGTGCTTGAC 60.667 52.381 0.00 0.00 42.16 3.18
3093 5340 1.267806 CGGCATTTCTTGTGCTTGACT 59.732 47.619 0.00 0.00 42.16 3.41
3094 5341 2.669364 GGCATTTCTTGTGCTTGACTG 58.331 47.619 0.00 0.00 42.16 3.51
3095 5342 2.608752 GGCATTTCTTGTGCTTGACTGG 60.609 50.000 0.00 0.00 42.16 4.00
3096 5343 2.669364 CATTTCTTGTGCTTGACTGGC 58.331 47.619 0.00 0.00 0.00 4.85
3097 5344 1.761449 TTTCTTGTGCTTGACTGGCA 58.239 45.000 0.00 0.00 37.36 4.92
3105 5352 3.096489 TGCTTGACTGGCACATTTTTC 57.904 42.857 0.00 0.00 38.20 2.29
3106 5353 2.694628 TGCTTGACTGGCACATTTTTCT 59.305 40.909 0.00 0.00 38.20 2.52
3107 5354 3.132646 TGCTTGACTGGCACATTTTTCTT 59.867 39.130 0.00 0.00 38.20 2.52
3108 5355 4.122046 GCTTGACTGGCACATTTTTCTTT 58.878 39.130 0.00 0.00 38.20 2.52
3109 5356 4.571984 GCTTGACTGGCACATTTTTCTTTT 59.428 37.500 0.00 0.00 38.20 2.27
3124 5371 4.637483 TTCTTTTCTTGTGCTTGACTGG 57.363 40.909 0.00 0.00 0.00 4.00
3233 5480 2.303890 TCTGTCACAAGATGCAGGTGAT 59.696 45.455 13.93 0.00 42.81 3.06
3236 5483 4.847198 TGTCACAAGATGCAGGTGATATT 58.153 39.130 13.93 0.00 42.81 1.28
3238 5485 4.637534 GTCACAAGATGCAGGTGATATTGT 59.362 41.667 13.93 4.41 42.81 2.71
3243 5490 2.042686 TGCAGGTGATATTGTGCTCC 57.957 50.000 0.00 0.00 36.84 4.70
3245 5492 1.672881 GCAGGTGATATTGTGCTCCAC 59.327 52.381 0.00 0.00 32.97 4.02
3246 5493 2.292267 CAGGTGATATTGTGCTCCACC 58.708 52.381 0.00 0.00 45.57 4.61
3263 5510 4.722700 CGGGGAGCAACACCCTGG 62.723 72.222 0.00 0.00 46.89 4.45
3283 5530 5.092554 TGGGCTAACAAGATCGATAAACA 57.907 39.130 0.00 0.00 0.00 2.83
3330 5577 3.952323 TCCCCTGAAGTATACTGACGAAG 59.048 47.826 6.06 0.47 0.00 3.79
3479 5727 5.337009 GGAAACAGTACCGTAGAGATCCAAA 60.337 44.000 0.00 0.00 0.00 3.28
3509 5757 5.537295 CCCATTCTGCATGATCAATTTCCTA 59.463 40.000 0.00 0.00 34.31 2.94
3537 5785 4.986783 TCTCTGAACTGAACCTGAGTCTA 58.013 43.478 0.00 0.00 32.44 2.59
3543 5791 2.300437 ACTGAACCTGAGTCTACAAGCC 59.700 50.000 0.00 0.00 0.00 4.35
3635 5883 1.332195 AGCATCCTGATAGCGCACTA 58.668 50.000 11.47 0.00 0.00 2.74
3639 5887 3.573598 CATCCTGATAGCGCACTAAGAG 58.426 50.000 11.47 0.00 30.45 2.85
3648 5896 1.808411 CGCACTAAGAGAAAGGCCAA 58.192 50.000 5.01 0.00 0.00 4.52
3651 5899 3.412386 GCACTAAGAGAAAGGCCAAAGA 58.588 45.455 5.01 0.00 0.00 2.52
3654 5902 4.453819 CACTAAGAGAAAGGCCAAAGAGTG 59.546 45.833 5.01 3.43 0.00 3.51
3655 5903 3.584733 AAGAGAAAGGCCAAAGAGTGT 57.415 42.857 5.01 0.00 0.00 3.55
3670 5918 5.836024 AAGAGTGTAGTACCATGGGAAAA 57.164 39.130 18.09 0.00 0.00 2.29
3681 5929 4.498493 ACCATGGGAAAAATACCCTTGTT 58.502 39.130 18.09 1.81 45.43 2.83
3717 5965 3.070018 CGCTCTTCCTTGAATCAACACT 58.930 45.455 0.00 0.00 0.00 3.55
3718 5966 3.120408 CGCTCTTCCTTGAATCAACACTG 60.120 47.826 0.00 0.00 0.00 3.66
3723 5971 5.528690 TCTTCCTTGAATCAACACTGTTGAG 59.471 40.000 24.99 13.64 0.00 3.02
3737 5985 6.219473 ACACTGTTGAGTACTTTGAGATCTG 58.781 40.000 0.00 0.00 0.00 2.90
3814 6062 9.904198 TCTTCCAACAATCTGAATAATGATACA 57.096 29.630 0.00 0.00 0.00 2.29
3883 6132 3.958798 TGACAGGGATACTAGTTAGCACC 59.041 47.826 0.00 0.00 0.00 5.01
3889 6138 3.004524 GGATACTAGTTAGCACCGACTGG 59.995 52.174 0.00 0.00 42.84 4.00
3931 6180 7.015195 CCATATTTACCACTTATTTTGAGGGGG 59.985 40.741 0.00 0.00 42.21 5.40
4013 6262 9.764363 TGTATCTCCTACATGTCATAATTGAAC 57.236 33.333 0.00 0.00 35.38 3.18
4051 6300 3.964909 AGTTCCACAACTTCGCATTTTC 58.035 40.909 0.00 0.00 40.16 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.595463 CATTCCCGGCCGATGCAT 60.595 61.111 30.73 10.56 40.13 3.96
3 4 4.873810 CCATTCCCGGCCGATGCA 62.874 66.667 30.73 8.27 40.13 3.96
4 5 4.875713 ACCATTCCCGGCCGATGC 62.876 66.667 30.73 0.00 0.00 3.91
7 8 1.974343 CAAAACCATTCCCGGCCGA 60.974 57.895 30.73 7.23 0.00 5.54
8 9 2.571231 CAAAACCATTCCCGGCCG 59.429 61.111 21.04 21.04 0.00 6.13
10 11 0.175531 CATCCAAAACCATTCCCGGC 59.824 55.000 0.00 0.00 0.00 6.13
11 12 0.823460 CCATCCAAAACCATTCCCGG 59.177 55.000 0.00 0.00 0.00 5.73
12 13 0.823460 CCCATCCAAAACCATTCCCG 59.177 55.000 0.00 0.00 0.00 5.14
13 14 0.541392 GCCCATCCAAAACCATTCCC 59.459 55.000 0.00 0.00 0.00 3.97
14 15 0.541392 GGCCCATCCAAAACCATTCC 59.459 55.000 0.00 0.00 34.01 3.01
15 16 0.175531 CGGCCCATCCAAAACCATTC 59.824 55.000 0.00 0.00 34.01 2.67
16 17 1.898330 GCGGCCCATCCAAAACCATT 61.898 55.000 0.00 0.00 34.01 3.16
17 18 2.358372 GCGGCCCATCCAAAACCAT 61.358 57.895 0.00 0.00 34.01 3.55
18 19 2.994417 GCGGCCCATCCAAAACCA 60.994 61.111 0.00 0.00 34.01 3.67
19 20 4.128388 CGCGGCCCATCCAAAACC 62.128 66.667 0.00 0.00 34.01 3.27
20 21 4.128388 CCGCGGCCCATCCAAAAC 62.128 66.667 14.67 0.00 34.01 2.43
57 58 4.054825 AAACTTGGCGCATGCGGG 62.055 61.111 38.22 15.19 44.10 6.13
58 59 2.806198 CAAACTTGGCGCATGCGG 60.806 61.111 38.22 24.84 44.10 5.69
59 60 3.472298 GCAAACTTGGCGCATGCG 61.472 61.111 34.83 34.83 44.10 4.73
66 67 2.642996 AAACTGGGCGCAAACTTGGC 62.643 55.000 10.83 0.00 0.00 4.52
67 68 0.671251 TAAACTGGGCGCAAACTTGG 59.329 50.000 10.83 0.00 0.00 3.61
68 69 1.766069 GTAAACTGGGCGCAAACTTG 58.234 50.000 10.83 0.00 0.00 3.16
69 70 0.309612 CGTAAACTGGGCGCAAACTT 59.690 50.000 10.83 1.06 0.00 2.66
70 71 1.512156 CCGTAAACTGGGCGCAAACT 61.512 55.000 10.83 0.00 0.00 2.66
71 72 1.081708 CCGTAAACTGGGCGCAAAC 60.082 57.895 10.83 0.00 0.00 2.93
72 73 2.262303 CCCGTAAACTGGGCGCAAA 61.262 57.895 10.83 0.00 40.47 3.68
73 74 2.472414 ATCCCGTAAACTGGGCGCAA 62.472 55.000 10.83 0.00 46.92 4.85
74 75 2.862674 GATCCCGTAAACTGGGCGCA 62.863 60.000 10.83 2.47 46.92 6.09
75 76 2.124860 ATCCCGTAAACTGGGCGC 60.125 61.111 0.00 0.00 46.92 6.53
76 77 1.087771 GTGATCCCGTAAACTGGGCG 61.088 60.000 5.48 0.00 46.92 6.13
77 78 0.035820 TGTGATCCCGTAAACTGGGC 60.036 55.000 5.48 0.00 46.92 5.36
79 80 1.067425 TCGTGTGATCCCGTAAACTGG 60.067 52.381 0.00 0.00 0.00 4.00
80 81 2.357327 TCGTGTGATCCCGTAAACTG 57.643 50.000 0.00 0.00 0.00 3.16
81 82 2.036217 TGTTCGTGTGATCCCGTAAACT 59.964 45.455 0.00 0.00 0.00 2.66
82 83 2.156310 GTGTTCGTGTGATCCCGTAAAC 59.844 50.000 0.00 0.00 0.00 2.01
83 84 2.406130 GTGTTCGTGTGATCCCGTAAA 58.594 47.619 0.00 0.00 0.00 2.01
84 85 1.666599 CGTGTTCGTGTGATCCCGTAA 60.667 52.381 0.00 0.00 0.00 3.18
85 86 0.109643 CGTGTTCGTGTGATCCCGTA 60.110 55.000 0.00 0.00 0.00 4.02
86 87 1.372499 CGTGTTCGTGTGATCCCGT 60.372 57.895 0.00 0.00 0.00 5.28
87 88 3.459027 CGTGTTCGTGTGATCCCG 58.541 61.111 0.00 0.00 0.00 5.14
108 109 1.677633 CAATTCCCCACCGGTCCAC 60.678 63.158 2.59 0.00 0.00 4.02
112 113 1.078347 AATGCAATTCCCCACCGGT 59.922 52.632 0.00 0.00 0.00 5.28
120 121 2.557317 CAAGCCATCCAATGCAATTCC 58.443 47.619 0.00 0.00 31.22 3.01
128 129 1.483415 GGAACATGCAAGCCATCCAAT 59.517 47.619 0.00 0.00 29.71 3.16
162 163 1.403679 CAAACTGACCGCAAAAGTCCA 59.596 47.619 0.00 0.00 33.09 4.02
175 176 3.830178 TCTAACGAGGACCATCAAACTGA 59.170 43.478 0.00 0.00 0.00 3.41
194 195 2.170166 CAAAAGGGCTTGTGGCATCTA 58.830 47.619 0.00 0.00 44.01 1.98
250 251 1.892474 GTGTAGAAAAATGGCCAGGCA 59.108 47.619 15.19 5.03 0.00 4.75
255 256 3.243602 ACGTTTGGTGTAGAAAAATGGCC 60.244 43.478 0.00 0.00 0.00 5.36
258 259 5.176407 TGGACGTTTGGTGTAGAAAAATG 57.824 39.130 0.00 0.00 0.00 2.32
260 261 5.400703 GTTTGGACGTTTGGTGTAGAAAAA 58.599 37.500 0.00 0.00 0.00 1.94
279 280 3.763902 TGAATTCGTGTGTTGTGGTTTG 58.236 40.909 0.04 0.00 0.00 2.93
287 288 2.032799 ACGCATGTTGAATTCGTGTGTT 59.967 40.909 11.11 1.08 40.94 3.32
293 294 3.463533 TTGGTACGCATGTTGAATTCG 57.536 42.857 0.04 0.00 0.00 3.34
294 295 3.608073 GCTTTGGTACGCATGTTGAATTC 59.392 43.478 0.00 0.00 0.00 2.17
295 296 3.255642 AGCTTTGGTACGCATGTTGAATT 59.744 39.130 0.00 0.00 0.00 2.17
296 297 2.819608 AGCTTTGGTACGCATGTTGAAT 59.180 40.909 0.00 0.00 0.00 2.57
297 298 2.225491 GAGCTTTGGTACGCATGTTGAA 59.775 45.455 0.00 0.00 0.00 2.69
298 299 1.804151 GAGCTTTGGTACGCATGTTGA 59.196 47.619 0.00 0.00 0.00 3.18
299 300 1.535028 TGAGCTTTGGTACGCATGTTG 59.465 47.619 0.00 0.00 0.00 3.33
300 301 1.806542 CTGAGCTTTGGTACGCATGTT 59.193 47.619 0.00 0.00 0.00 2.71
301 302 1.442769 CTGAGCTTTGGTACGCATGT 58.557 50.000 0.00 0.00 0.00 3.21
302 303 0.097674 GCTGAGCTTTGGTACGCATG 59.902 55.000 0.00 0.00 0.00 4.06
303 304 1.361668 CGCTGAGCTTTGGTACGCAT 61.362 55.000 1.78 0.00 0.00 4.73
304 305 2.027073 CGCTGAGCTTTGGTACGCA 61.027 57.895 1.78 0.00 0.00 5.24
305 306 1.736645 TCGCTGAGCTTTGGTACGC 60.737 57.895 1.78 0.00 0.00 4.42
335 336 9.143631 AGTCAAGCATGAAAATGTTAATTAAGC 57.856 29.630 0.00 0.00 37.30 3.09
377 2479 0.947244 AGCAAGACGAAACCAAGCAG 59.053 50.000 0.00 0.00 0.00 4.24
406 2508 1.200103 GACGCGATCGATGCATGTG 59.800 57.895 21.57 0.00 39.41 3.21
407 2509 1.951130 GGACGCGATCGATGCATGT 60.951 57.895 21.57 6.28 39.41 3.21
408 2510 2.661566 GGGACGCGATCGATGCATG 61.662 63.158 21.57 2.89 39.41 4.06
409 2511 2.356313 GGGACGCGATCGATGCAT 60.356 61.111 21.57 0.00 39.41 3.96
427 2529 2.633488 ACTCCGCATAAAGCCTTTCTC 58.367 47.619 0.00 0.00 41.38 2.87
440 2542 4.258543 CTCCCAAATAAAACTACTCCGCA 58.741 43.478 0.00 0.00 0.00 5.69
473 2575 8.258007 AGACCAAATTACGTCTCATCTAAATGA 58.742 33.333 0.00 0.00 39.63 2.57
474 2576 8.425577 AGACCAAATTACGTCTCATCTAAATG 57.574 34.615 0.00 0.00 34.15 2.32
484 2586 4.935808 GGTGAATGAGACCAAATTACGTCT 59.064 41.667 6.98 6.98 42.02 4.18
485 2587 4.935808 AGGTGAATGAGACCAAATTACGTC 59.064 41.667 0.00 0.00 35.76 4.34
486 2588 4.695455 CAGGTGAATGAGACCAAATTACGT 59.305 41.667 0.00 0.00 35.76 3.57
487 2589 4.935205 TCAGGTGAATGAGACCAAATTACG 59.065 41.667 0.00 0.00 35.76 3.18
488 2590 6.817765 TTCAGGTGAATGAGACCAAATTAC 57.182 37.500 0.00 0.00 35.76 1.89
489 2591 7.831691 TTTTCAGGTGAATGAGACCAAATTA 57.168 32.000 0.00 0.00 35.76 1.40
490 2592 6.729690 TTTTCAGGTGAATGAGACCAAATT 57.270 33.333 0.00 0.00 35.76 1.82
491 2593 6.098124 TGTTTTTCAGGTGAATGAGACCAAAT 59.902 34.615 0.00 0.00 35.76 2.32
492 2594 5.420421 TGTTTTTCAGGTGAATGAGACCAAA 59.580 36.000 0.00 0.00 35.76 3.28
493 2595 4.952957 TGTTTTTCAGGTGAATGAGACCAA 59.047 37.500 0.00 0.00 35.76 3.67
494 2596 4.531854 TGTTTTTCAGGTGAATGAGACCA 58.468 39.130 0.00 0.00 35.76 4.02
495 2597 5.299279 TCTTGTTTTTCAGGTGAATGAGACC 59.701 40.000 0.00 0.00 33.54 3.85
496 2598 6.377327 TCTTGTTTTTCAGGTGAATGAGAC 57.623 37.500 0.00 0.00 33.54 3.36
497 2599 6.458206 CGTTCTTGTTTTTCAGGTGAATGAGA 60.458 38.462 0.00 0.00 33.54 3.27
498 2600 5.682862 CGTTCTTGTTTTTCAGGTGAATGAG 59.317 40.000 0.00 0.00 33.54 2.90
499 2601 5.449862 CCGTTCTTGTTTTTCAGGTGAATGA 60.450 40.000 0.00 0.00 33.54 2.57
500 2602 4.739716 CCGTTCTTGTTTTTCAGGTGAATG 59.260 41.667 0.00 0.00 33.54 2.67
501 2603 4.642885 TCCGTTCTTGTTTTTCAGGTGAAT 59.357 37.500 0.00 0.00 33.54 2.57
502 2604 4.011023 TCCGTTCTTGTTTTTCAGGTGAA 58.989 39.130 0.00 0.00 0.00 3.18
503 2605 3.611970 TCCGTTCTTGTTTTTCAGGTGA 58.388 40.909 0.00 0.00 0.00 4.02
504 2606 4.568152 ATCCGTTCTTGTTTTTCAGGTG 57.432 40.909 0.00 0.00 0.00 4.00
505 2607 5.127491 TGTATCCGTTCTTGTTTTTCAGGT 58.873 37.500 0.00 0.00 0.00 4.00
506 2608 5.682943 TGTATCCGTTCTTGTTTTTCAGG 57.317 39.130 0.00 0.00 0.00 3.86
507 2609 5.912955 GGTTGTATCCGTTCTTGTTTTTCAG 59.087 40.000 0.00 0.00 0.00 3.02
508 2610 5.221087 GGGTTGTATCCGTTCTTGTTTTTCA 60.221 40.000 0.00 0.00 0.00 2.69
509 2611 5.217393 GGGTTGTATCCGTTCTTGTTTTTC 58.783 41.667 0.00 0.00 0.00 2.29
510 2612 4.645588 TGGGTTGTATCCGTTCTTGTTTTT 59.354 37.500 0.00 0.00 0.00 1.94
511 2613 4.208746 TGGGTTGTATCCGTTCTTGTTTT 58.791 39.130 0.00 0.00 0.00 2.43
512 2614 3.822940 TGGGTTGTATCCGTTCTTGTTT 58.177 40.909 0.00 0.00 0.00 2.83
513 2615 3.495434 TGGGTTGTATCCGTTCTTGTT 57.505 42.857 0.00 0.00 0.00 2.83
514 2616 3.713826 ATGGGTTGTATCCGTTCTTGT 57.286 42.857 0.00 0.00 0.00 3.16
515 2617 5.364778 TGATATGGGTTGTATCCGTTCTTG 58.635 41.667 0.00 0.00 0.00 3.02
516 2618 5.611374 CTGATATGGGTTGTATCCGTTCTT 58.389 41.667 0.00 0.00 0.00 2.52
517 2619 4.503296 GCTGATATGGGTTGTATCCGTTCT 60.503 45.833 0.00 0.00 0.00 3.01
518 2620 3.746492 GCTGATATGGGTTGTATCCGTTC 59.254 47.826 0.00 0.00 0.00 3.95
519 2621 3.135712 TGCTGATATGGGTTGTATCCGTT 59.864 43.478 0.00 0.00 0.00 4.44
520 2622 2.703536 TGCTGATATGGGTTGTATCCGT 59.296 45.455 0.00 0.00 0.00 4.69
521 2623 3.067106 GTGCTGATATGGGTTGTATCCG 58.933 50.000 0.00 0.00 0.00 4.18
522 2624 3.815401 GTGTGCTGATATGGGTTGTATCC 59.185 47.826 0.00 0.00 0.00 2.59
523 2625 4.273480 GTGTGTGCTGATATGGGTTGTATC 59.727 45.833 0.00 0.00 0.00 2.24
524 2626 4.199310 GTGTGTGCTGATATGGGTTGTAT 58.801 43.478 0.00 0.00 0.00 2.29
525 2627 3.605634 GTGTGTGCTGATATGGGTTGTA 58.394 45.455 0.00 0.00 0.00 2.41
526 2628 2.436417 GTGTGTGCTGATATGGGTTGT 58.564 47.619 0.00 0.00 0.00 3.32
527 2629 1.398041 CGTGTGTGCTGATATGGGTTG 59.602 52.381 0.00 0.00 0.00 3.77
528 2630 1.737838 CGTGTGTGCTGATATGGGTT 58.262 50.000 0.00 0.00 0.00 4.11
529 2631 0.744414 GCGTGTGTGCTGATATGGGT 60.744 55.000 0.00 0.00 0.00 4.51
530 2632 0.744057 TGCGTGTGTGCTGATATGGG 60.744 55.000 0.00 0.00 35.36 4.00
531 2633 1.262417 GATGCGTGTGTGCTGATATGG 59.738 52.381 0.00 0.00 35.36 2.74
532 2634 2.207590 AGATGCGTGTGTGCTGATATG 58.792 47.619 0.00 0.00 35.36 1.78
533 2635 2.609427 AGATGCGTGTGTGCTGATAT 57.391 45.000 0.00 0.00 35.36 1.63
534 2636 2.385013 AAGATGCGTGTGTGCTGATA 57.615 45.000 0.00 0.00 35.36 2.15
535 2637 2.385013 TAAGATGCGTGTGTGCTGAT 57.615 45.000 0.00 0.00 35.36 2.90
536 2638 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
537 2639 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
538 2640 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
539 2641 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
540 2642 3.803778 TGATGCTATAAGATGCGTGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
541 2643 3.804325 GTGATGCTATAAGATGCGTGTGT 59.196 43.478 0.00 0.00 0.00 3.72
542 2644 3.803778 TGTGATGCTATAAGATGCGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
543 2645 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
544 2646 5.178067 TGAATGTGATGCTATAAGATGCGTG 59.822 40.000 0.00 0.00 0.00 5.34
545 2647 5.299949 TGAATGTGATGCTATAAGATGCGT 58.700 37.500 0.00 0.00 0.00 5.24
546 2648 5.851047 TGAATGTGATGCTATAAGATGCG 57.149 39.130 0.00 0.00 0.00 4.73
547 2649 7.027760 CCATTGAATGTGATGCTATAAGATGC 58.972 38.462 4.27 0.00 0.00 3.91
548 2650 7.027760 GCCATTGAATGTGATGCTATAAGATG 58.972 38.462 4.27 0.00 0.00 2.90
549 2651 6.946583 AGCCATTGAATGTGATGCTATAAGAT 59.053 34.615 4.27 0.00 0.00 2.40
550 2652 6.301486 AGCCATTGAATGTGATGCTATAAGA 58.699 36.000 4.27 0.00 0.00 2.10
551 2653 6.570672 AGCCATTGAATGTGATGCTATAAG 57.429 37.500 4.27 0.00 0.00 1.73
552 2654 9.737844 TTATAGCCATTGAATGTGATGCTATAA 57.262 29.630 25.56 25.56 35.49 0.98
553 2655 9.737844 TTTATAGCCATTGAATGTGATGCTATA 57.262 29.630 20.23 20.23 31.46 1.31
554 2656 8.640063 TTTATAGCCATTGAATGTGATGCTAT 57.360 30.769 21.62 21.62 32.56 2.97
555 2657 8.462589 TTTTATAGCCATTGAATGTGATGCTA 57.537 30.769 13.54 13.54 0.00 3.49
556 2658 6.964807 TTTATAGCCATTGAATGTGATGCT 57.035 33.333 10.61 10.61 0.00 3.79
557 2659 6.643770 CCTTTTATAGCCATTGAATGTGATGC 59.356 38.462 4.27 0.37 0.00 3.91
558 2660 7.650504 CACCTTTTATAGCCATTGAATGTGATG 59.349 37.037 4.27 0.00 0.00 3.07
559 2661 7.560991 TCACCTTTTATAGCCATTGAATGTGAT 59.439 33.333 4.27 0.00 0.00 3.06
560 2662 6.889177 TCACCTTTTATAGCCATTGAATGTGA 59.111 34.615 4.27 0.00 0.00 3.58
561 2663 7.099266 TCACCTTTTATAGCCATTGAATGTG 57.901 36.000 4.27 0.00 0.00 3.21
562 2664 7.716799 TTCACCTTTTATAGCCATTGAATGT 57.283 32.000 4.27 0.00 0.00 2.71
563 2665 8.415553 TCATTCACCTTTTATAGCCATTGAATG 58.584 33.333 12.61 12.61 45.38 2.67
564 2666 8.537728 TCATTCACCTTTTATAGCCATTGAAT 57.462 30.769 0.00 0.00 33.72 2.57
565 2667 7.833682 TCTCATTCACCTTTTATAGCCATTGAA 59.166 33.333 0.00 0.00 0.00 2.69
566 2668 7.283127 GTCTCATTCACCTTTTATAGCCATTGA 59.717 37.037 0.00 0.00 0.00 2.57
567 2669 7.420800 GTCTCATTCACCTTTTATAGCCATTG 58.579 38.462 0.00 0.00 0.00 2.82
568 2670 6.547510 GGTCTCATTCACCTTTTATAGCCATT 59.452 38.462 0.00 0.00 0.00 3.16
569 2671 6.064717 GGTCTCATTCACCTTTTATAGCCAT 58.935 40.000 0.00 0.00 0.00 4.40
570 2672 5.045213 TGGTCTCATTCACCTTTTATAGCCA 60.045 40.000 0.00 0.00 34.66 4.75
571 2673 5.437060 TGGTCTCATTCACCTTTTATAGCC 58.563 41.667 0.00 0.00 34.66 3.93
572 2674 7.391148 TTTGGTCTCATTCACCTTTTATAGC 57.609 36.000 0.00 0.00 34.66 2.97
577 2679 9.710900 GATTTAATTTGGTCTCATTCACCTTTT 57.289 29.630 0.00 0.00 34.66 2.27
578 2680 9.093458 AGATTTAATTTGGTCTCATTCACCTTT 57.907 29.630 0.00 0.00 34.66 3.11
579 2681 8.655935 AGATTTAATTTGGTCTCATTCACCTT 57.344 30.769 0.00 0.00 34.66 3.50
580 2682 7.890127 TGAGATTTAATTTGGTCTCATTCACCT 59.110 33.333 10.50 0.00 41.40 4.00
581 2683 8.055279 TGAGATTTAATTTGGTCTCATTCACC 57.945 34.615 10.50 0.00 41.40 4.02
605 2707 9.941664 CCAGTTTTGCTAGAACTCATTTATATG 57.058 33.333 0.00 0.00 35.26 1.78
606 2708 9.686683 ACCAGTTTTGCTAGAACTCATTTATAT 57.313 29.630 0.00 0.00 35.26 0.86
607 2709 9.515226 AACCAGTTTTGCTAGAACTCATTTATA 57.485 29.630 0.00 0.00 35.26 0.98
608 2710 8.409358 AACCAGTTTTGCTAGAACTCATTTAT 57.591 30.769 0.00 0.00 35.26 1.40
609 2711 7.817418 AACCAGTTTTGCTAGAACTCATTTA 57.183 32.000 0.00 0.00 35.26 1.40
610 2712 6.715347 AACCAGTTTTGCTAGAACTCATTT 57.285 33.333 0.00 0.00 35.26 2.32
611 2713 6.715347 AAACCAGTTTTGCTAGAACTCATT 57.285 33.333 0.00 0.00 35.26 2.57
612 2714 6.715347 AAAACCAGTTTTGCTAGAACTCAT 57.285 33.333 7.68 0.00 40.84 2.90
613 2715 6.524101 AAAAACCAGTTTTGCTAGAACTCA 57.476 33.333 9.15 0.00 41.45 3.41
633 2735 4.873259 CCGGCCAAAAGAAAGAAAGAAAAA 59.127 37.500 2.24 0.00 0.00 1.94
663 2765 4.680237 CGGCACAAGTCCTCCGCA 62.680 66.667 0.00 0.00 35.20 5.69
718 2830 3.798202 ACGAGGTCAGCAAATTCTATCC 58.202 45.455 0.00 0.00 0.00 2.59
754 2866 2.417107 CGCATTATTTGAGCTTGCCCAA 60.417 45.455 0.00 0.00 0.00 4.12
756 2868 1.405105 TCGCATTATTTGAGCTTGCCC 59.595 47.619 0.00 0.00 0.00 5.36
791 2903 2.506865 CGTCGCTGTCTGTTAGTACTG 58.493 52.381 5.39 0.00 0.00 2.74
810 2929 1.693083 GGTCTGAATTTCCGGACGCG 61.693 60.000 1.83 3.53 42.01 6.01
872 2997 0.798776 AAGTACGCATTGCTGTCTGC 59.201 50.000 7.12 0.00 43.25 4.26
885 3128 3.241804 GGTACGAGTACGACTGAAGTACG 60.242 52.174 7.24 0.00 46.46 3.67
891 3134 0.615331 AGGGGTACGAGTACGACTGA 59.385 55.000 7.24 0.00 42.66 3.41
900 3143 2.832201 GGACGGGAGGGGTACGAG 60.832 72.222 0.00 0.00 0.00 4.18
934 3178 0.039708 GAAGAAGCAGTGCAGTTGCC 60.040 55.000 19.20 5.63 42.48 4.52
949 3193 0.389817 CAAGTGCCGATGGACGAAGA 60.390 55.000 0.00 0.00 45.77 2.87
950 3194 0.670546 ACAAGTGCCGATGGACGAAG 60.671 55.000 0.00 0.00 45.77 3.79
951 3195 0.604073 TACAAGTGCCGATGGACGAA 59.396 50.000 0.00 0.00 45.77 3.85
952 3196 0.172578 CTACAAGTGCCGATGGACGA 59.827 55.000 0.00 0.00 45.77 4.20
1074 3318 1.446099 GAAGCGGTCGTCATCAGCA 60.446 57.895 0.00 0.00 0.00 4.41
1144 3388 2.125961 GGAGGCCGTCCGTAGTGAT 61.126 63.158 0.00 0.00 34.84 3.06
1165 3409 3.414700 CGTGCCGTTGGTCAGCTC 61.415 66.667 0.00 0.00 0.00 4.09
1250 3494 4.796231 CCGAGAAGGACCGCACCG 62.796 72.222 0.00 0.00 45.00 4.94
1302 3546 2.743928 CCGTGGCAGCTGAGGTTC 60.744 66.667 20.43 0.00 0.00 3.62
1531 3775 2.456119 CGTCGTCGTAGTAGCCGGT 61.456 63.158 1.90 0.00 0.00 5.28
1533 3777 0.382758 CATCGTCGTCGTAGTAGCCG 60.383 60.000 1.33 0.00 38.33 5.52
1540 3787 2.705220 CTCGCCATCGTCGTCGTA 59.295 61.111 1.33 0.00 38.33 3.43
1561 3808 3.119096 GAAGGTGCCGCCGTTCTC 61.119 66.667 0.00 0.00 43.70 2.87
1562 3809 4.699522 GGAAGGTGCCGCCGTTCT 62.700 66.667 11.51 0.00 43.70 3.01
1563 3810 2.862674 TATGGAAGGTGCCGCCGTTC 62.863 60.000 3.86 6.00 43.70 3.95
1564 3811 2.869503 CTATGGAAGGTGCCGCCGTT 62.870 60.000 3.86 0.00 43.70 4.44
1565 3812 3.385749 CTATGGAAGGTGCCGCCGT 62.386 63.158 0.00 0.00 43.70 5.68
1566 3813 2.588877 CTATGGAAGGTGCCGCCG 60.589 66.667 0.00 0.00 43.70 6.46
1567 3814 2.902343 GCTATGGAAGGTGCCGCC 60.902 66.667 0.00 0.00 37.58 6.13
1568 3815 1.526917 ATGCTATGGAAGGTGCCGC 60.527 57.895 0.00 0.00 0.00 6.53
1582 3829 1.227586 CGCTGATGAGGCTCATGCT 60.228 57.895 33.30 12.12 37.20 3.79
1660 3907 2.356667 CCTCTCCAAGGGGGCAAC 59.643 66.667 0.00 0.00 42.03 4.17
1687 3934 1.984570 CAGAGACGAGGGGCCTTGA 60.985 63.158 0.84 0.00 0.00 3.02
1695 3942 0.528017 TGTAGCTTGCAGAGACGAGG 59.472 55.000 0.00 0.00 0.00 4.63
1753 4000 4.821589 GCCGGTTGCGGAGGAGAG 62.822 72.222 1.90 0.00 0.00 3.20
1764 4011 2.267961 GAGTTGATCGGGCCGGTT 59.732 61.111 27.98 14.52 0.00 4.44
1777 4024 0.246635 AGAATGTAGTGCCGCGAGTT 59.753 50.000 8.23 0.00 0.00 3.01
1782 4029 1.026718 AGCCAAGAATGTAGTGCCGC 61.027 55.000 0.00 0.00 0.00 6.53
1785 4032 2.012673 CTCCAGCCAAGAATGTAGTGC 58.987 52.381 0.00 0.00 0.00 4.40
1800 4047 4.069232 TCCACGCCGAAGCTCCAG 62.069 66.667 0.00 0.00 36.60 3.86
1872 4119 0.613260 CCTTGGATCGTGACTTGGGA 59.387 55.000 0.00 0.00 0.00 4.37
1879 4126 3.781307 CGGGGCCTTGGATCGTGA 61.781 66.667 0.84 0.00 0.00 4.35
1889 4136 4.489771 CAGCGATTTCCGGGGCCT 62.490 66.667 0.84 0.00 39.04 5.19
1892 4139 3.508840 GCACAGCGATTTCCGGGG 61.509 66.667 0.00 0.00 39.04 5.73
1917 4164 2.426024 AGCCAGTAGAAATGCTGCAATG 59.574 45.455 6.36 0.00 31.70 2.82
2133 4380 1.597742 TCACAGCAACTTCCAGCTTC 58.402 50.000 0.00 0.00 39.50 3.86
2238 4485 2.339418 CAATAACCGAGTAACCGCACA 58.661 47.619 0.00 0.00 0.00 4.57
2343 4590 0.959372 GCATCACTGCCTGCTTGTCT 60.959 55.000 0.00 0.00 42.88 3.41
2355 4602 1.005097 TGAGCCCAATTCAGCATCACT 59.995 47.619 0.00 0.00 0.00 3.41
2356 4603 1.133790 GTGAGCCCAATTCAGCATCAC 59.866 52.381 10.36 10.36 33.37 3.06
2361 4608 0.610232 ACCTGTGAGCCCAATTCAGC 60.610 55.000 0.00 0.00 0.00 4.26
2524 4771 2.890474 GCCATGGTCGTACAGCCG 60.890 66.667 14.67 0.00 0.00 5.52
2529 4776 1.808390 GTCGGTGCCATGGTCGTAC 60.808 63.158 14.67 7.73 0.00 3.67
2619 4866 2.615912 GGCAAATACATCTGTGAGAGGC 59.384 50.000 0.00 0.00 27.13 4.70
2700 4947 3.736252 CCAACAGAATACTATCGCCTTCG 59.264 47.826 0.00 0.00 0.00 3.79
2701 4948 4.694339 ACCAACAGAATACTATCGCCTTC 58.306 43.478 0.00 0.00 0.00 3.46
2763 5010 1.135139 AGTGTTGGATCCATCGTCTCG 59.865 52.381 17.06 0.00 0.00 4.04
2775 5022 2.936919 AGTCATCTTGCAGTGTTGGA 57.063 45.000 0.00 0.00 0.00 3.53
2788 5035 3.181499 ACCTCGTCGACATTGTAGTCATC 60.181 47.826 17.16 0.00 38.43 2.92
2881 5128 1.139058 GCCGTCAAGGTACTCCATGAT 59.861 52.381 0.00 0.00 42.26 2.45
2949 5196 4.142381 CCACTGTTTTTCATTAGGGCTAGC 60.142 45.833 6.04 6.04 0.00 3.42
3002 5249 2.277969 CGATGCTCAGCACTGAAGATT 58.722 47.619 0.00 0.00 43.04 2.40
3015 5262 3.857549 TCAGATATAGTGCCGATGCTC 57.142 47.619 0.00 0.00 38.71 4.26
3085 5332 2.694628 AGAAAAATGTGCCAGTCAAGCA 59.305 40.909 0.00 0.00 38.08 3.91
3086 5333 3.375782 AGAAAAATGTGCCAGTCAAGC 57.624 42.857 0.00 0.00 0.00 4.01
3087 5334 6.044682 AGAAAAGAAAAATGTGCCAGTCAAG 58.955 36.000 0.00 0.00 0.00 3.02
3088 5335 5.976458 AGAAAAGAAAAATGTGCCAGTCAA 58.024 33.333 0.00 0.00 0.00 3.18
3089 5336 5.596836 AGAAAAGAAAAATGTGCCAGTCA 57.403 34.783 0.00 0.00 0.00 3.41
3090 5337 5.812127 ACAAGAAAAGAAAAATGTGCCAGTC 59.188 36.000 0.00 0.00 0.00 3.51
3091 5338 5.581874 CACAAGAAAAGAAAAATGTGCCAGT 59.418 36.000 0.00 0.00 32.76 4.00
3092 5339 6.039781 CACAAGAAAAGAAAAATGTGCCAG 57.960 37.500 0.00 0.00 32.76 4.85
3096 5343 7.063780 AGTCAAGCACAAGAAAAGAAAAATGTG 59.936 33.333 0.00 0.00 40.72 3.21
3097 5344 7.063780 CAGTCAAGCACAAGAAAAGAAAAATGT 59.936 33.333 0.00 0.00 0.00 2.71
3098 5345 7.396419 CAGTCAAGCACAAGAAAAGAAAAATG 58.604 34.615 0.00 0.00 0.00 2.32
3099 5346 6.536224 CCAGTCAAGCACAAGAAAAGAAAAAT 59.464 34.615 0.00 0.00 0.00 1.82
3100 5347 5.868801 CCAGTCAAGCACAAGAAAAGAAAAA 59.131 36.000 0.00 0.00 0.00 1.94
3101 5348 5.410067 CCAGTCAAGCACAAGAAAAGAAAA 58.590 37.500 0.00 0.00 0.00 2.29
3102 5349 4.677779 GCCAGTCAAGCACAAGAAAAGAAA 60.678 41.667 0.00 0.00 0.00 2.52
3103 5350 3.181487 GCCAGTCAAGCACAAGAAAAGAA 60.181 43.478 0.00 0.00 0.00 2.52
3104 5351 2.358898 GCCAGTCAAGCACAAGAAAAGA 59.641 45.455 0.00 0.00 0.00 2.52
3105 5352 2.099592 TGCCAGTCAAGCACAAGAAAAG 59.900 45.455 0.00 0.00 34.69 2.27
3106 5353 2.098614 TGCCAGTCAAGCACAAGAAAA 58.901 42.857 0.00 0.00 34.69 2.29
3107 5354 1.761449 TGCCAGTCAAGCACAAGAAA 58.239 45.000 0.00 0.00 34.69 2.52
3108 5355 3.493028 TGCCAGTCAAGCACAAGAA 57.507 47.368 0.00 0.00 34.69 2.52
3151 5398 5.122869 GCAAGCATCTCTCTGATTTAACACA 59.877 40.000 0.00 0.00 32.05 3.72
3153 5400 5.353400 CAGCAAGCATCTCTCTGATTTAACA 59.647 40.000 0.00 0.00 32.05 2.41
3208 5455 2.483106 CCTGCATCTTGTGACAGAACAG 59.517 50.000 0.00 9.39 35.39 3.16
3233 5480 1.613928 TCCCCGGTGGAGCACAATA 60.614 57.895 7.51 0.00 38.61 1.90
3245 5492 4.722700 CAGGGTGTTGCTCCCCGG 62.723 72.222 0.00 0.00 46.17 5.73
3246 5493 4.722700 CCAGGGTGTTGCTCCCCG 62.723 72.222 2.95 0.00 46.17 5.73
3263 5510 6.092259 ACTTGTGTTTATCGATCTTGTTAGCC 59.908 38.462 0.00 0.00 0.00 3.93
3330 5577 8.993121 TCAAAATCAAGATGTCTACTGTTCTTC 58.007 33.333 0.00 0.00 0.00 2.87
3479 5727 5.314718 TGATCATGCAGAATGGGATAGTT 57.685 39.130 0.00 0.00 36.86 2.24
3509 5757 6.830838 ACTCAGGTTCAGTTCAGAGAAAAATT 59.169 34.615 0.00 0.00 0.00 1.82
3523 5771 2.564947 AGGCTTGTAGACTCAGGTTCAG 59.435 50.000 0.00 0.00 0.00 3.02
3537 5785 2.616842 CAAGTTTGTTCGGTAGGCTTGT 59.383 45.455 0.00 0.00 0.00 3.16
3625 5873 2.483889 GGCCTTTCTCTTAGTGCGCTAT 60.484 50.000 9.73 0.00 0.00 2.97
3635 5883 3.584733 ACACTCTTTGGCCTTTCTCTT 57.415 42.857 3.32 0.00 0.00 2.85
3639 5887 4.001652 GGTACTACACTCTTTGGCCTTTC 58.998 47.826 3.32 0.00 0.00 2.62
3648 5896 5.836024 TTTTCCCATGGTACTACACTCTT 57.164 39.130 11.73 0.00 0.00 2.85
3651 5899 6.420638 GGTATTTTTCCCATGGTACTACACT 58.579 40.000 11.73 0.00 0.00 3.55
3654 5902 6.009908 AGGGTATTTTTCCCATGGTACTAC 57.990 41.667 11.73 3.67 46.82 2.73
3655 5903 6.011451 ACAAGGGTATTTTTCCCATGGTACTA 60.011 38.462 11.73 0.00 44.94 1.82
3670 5918 4.918588 CCAACTAGGTGAACAAGGGTATT 58.081 43.478 10.08 0.00 0.00 1.89
3697 5945 3.817647 ACAGTGTTGATTCAAGGAAGAGC 59.182 43.478 0.00 0.00 0.00 4.09
3717 5965 4.991056 GCACAGATCTCAAAGTACTCAACA 59.009 41.667 0.00 0.00 0.00 3.33
3718 5966 4.991056 TGCACAGATCTCAAAGTACTCAAC 59.009 41.667 0.00 0.00 0.00 3.18
3723 5971 5.698545 ACTTTCTGCACAGATCTCAAAGTAC 59.301 40.000 11.21 0.00 37.29 2.73
3814 6062 5.593968 TGGAACGTGCGTTATCATATACTT 58.406 37.500 10.05 0.00 38.60 2.24
3815 6063 5.190992 TGGAACGTGCGTTATCATATACT 57.809 39.130 10.05 0.00 38.60 2.12
3816 6064 6.462073 AATGGAACGTGCGTTATCATATAC 57.538 37.500 18.57 4.08 38.60 1.47
3869 6117 3.894759 TCCAGTCGGTGCTAACTAGTAT 58.105 45.455 0.00 0.00 0.00 2.12
3883 6132 0.798776 GAGGTTGTTGCATCCAGTCG 59.201 55.000 0.00 0.00 0.00 4.18
3889 6138 1.315257 ATGGCGGAGGTTGTTGCATC 61.315 55.000 0.00 0.00 0.00 3.91
3931 6180 9.989869 GAGTGCTAAAAGAATAACCTGATAAAC 57.010 33.333 0.00 0.00 0.00 2.01
4009 6258 6.548441 ACTATTTTCGGATTTCAACGTTCA 57.452 33.333 0.00 0.00 0.00 3.18
4013 6262 5.793457 GTGGAACTATTTTCGGATTTCAACG 59.207 40.000 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.