Multiple sequence alignment - TraesCS2D01G218400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G218400 chr2D 100.000 2540 0 0 1 2540 182373062 182370523 0.000000e+00 4691.0
1 TraesCS2D01G218400 chr2D 91.892 111 7 2 2238 2346 182370741 182370631 1.220000e-33 154.0
2 TraesCS2D01G218400 chr2D 91.892 111 7 2 2322 2432 182370825 182370717 1.220000e-33 154.0
3 TraesCS2D01G218400 chr1D 84.751 1646 179 26 594 2170 378072525 378070883 0.000000e+00 1583.0
4 TraesCS2D01G218400 chr1D 86.831 243 27 5 593 832 377982891 377983131 1.500000e-67 267.0
5 TraesCS2D01G218400 chr3D 84.143 1009 105 19 594 1562 26069304 26068311 0.000000e+00 926.0
6 TraesCS2D01G218400 chr3D 88.235 374 41 1 1557 1927 26060407 26060034 6.450000e-121 444.0
7 TraesCS2D01G218400 chr3D 87.137 241 28 3 594 832 26040264 26040503 1.160000e-68 270.0
8 TraesCS2D01G218400 chr2B 79.618 1310 200 28 594 1851 655906066 655904772 0.000000e+00 878.0
9 TraesCS2D01G218400 chr2A 88.905 685 47 14 281 943 197463030 197462353 0.000000e+00 817.0
10 TraesCS2D01G218400 chr2A 85.380 513 49 14 1 496 247009947 247010450 2.250000e-140 508.0
11 TraesCS2D01G218400 chr2A 93.676 253 14 1 1 251 197463602 197463350 6.630000e-101 377.0
12 TraesCS2D01G218400 chr2A 87.234 94 10 2 500 593 247093714 247093805 3.460000e-19 106.0
13 TraesCS2D01G218400 chr7D 86.574 216 28 1 594 809 78887422 78887208 1.170000e-58 237.0
14 TraesCS2D01G218400 chr6B 85.000 240 29 6 594 829 551804685 551804921 1.170000e-58 237.0
15 TraesCS2D01G218400 chr4A 85.000 240 29 6 594 829 42254771 42255007 1.170000e-58 237.0
16 TraesCS2D01G218400 chr1B 84.426 244 30 7 591 829 391577490 391577730 1.520000e-57 233.0
17 TraesCS2D01G218400 chr5A 79.245 159 17 6 2383 2540 665954918 665954775 2.080000e-16 97.1
18 TraesCS2D01G218400 chr5A 100.000 30 0 0 1958 1987 665955184 665955155 3.530000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G218400 chr2D 182370523 182373062 2539 True 1666.333333 4691 94.594667 1 2540 3 chr2D.!!$R1 2539
1 TraesCS2D01G218400 chr1D 378070883 378072525 1642 True 1583.000000 1583 84.751000 594 2170 1 chr1D.!!$R1 1576
2 TraesCS2D01G218400 chr3D 26068311 26069304 993 True 926.000000 926 84.143000 594 1562 1 chr3D.!!$R2 968
3 TraesCS2D01G218400 chr2B 655904772 655906066 1294 True 878.000000 878 79.618000 594 1851 1 chr2B.!!$R1 1257
4 TraesCS2D01G218400 chr2A 197462353 197463602 1249 True 597.000000 817 91.290500 1 943 2 chr2A.!!$R1 942
5 TraesCS2D01G218400 chr2A 247009947 247010450 503 False 508.000000 508 85.380000 1 496 1 chr2A.!!$F1 495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 1036 0.322187 AATACGGTCCCTGTGGTTGC 60.322 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1622 2018 0.02877 CGCGCAACAAACTCTTCCAA 59.971 50.0 8.75 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 151 3.866379 TTCAAGCGGCAGCCACCAT 62.866 57.895 13.30 0.00 46.67 3.55
151 152 2.438254 CAAGCGGCAGCCACCATA 60.438 61.111 13.30 0.00 46.67 2.74
186 187 3.812019 CTCGACGACGGGGGTCTG 61.812 72.222 7.55 0.00 40.21 3.51
276 571 2.746277 CGTGCGGGGGAAGGAAAG 60.746 66.667 0.00 0.00 0.00 2.62
277 572 3.062466 GTGCGGGGGAAGGAAAGC 61.062 66.667 0.00 0.00 0.00 3.51
303 600 4.753662 TCCTCCACCCCCGAGTCG 62.754 72.222 5.29 5.29 0.00 4.18
320 617 2.285743 GGCCCTCTCCACCTCCTT 60.286 66.667 0.00 0.00 0.00 3.36
419 731 2.103373 TCCCTTCATCTTCCGACTGAG 58.897 52.381 0.00 0.00 0.00 3.35
530 849 1.599047 CGACTTCACAGGCCCTGAT 59.401 57.895 19.90 0.00 35.18 2.90
563 882 3.406595 GAATCGGTCCCTGCCCCAG 62.407 68.421 0.00 0.00 0.00 4.45
578 897 2.070039 CCAGGGGCCGAGTAATCCA 61.070 63.158 0.00 0.00 0.00 3.41
648 967 0.959553 GACGTCCAACTCAGTCCTGA 59.040 55.000 3.51 0.00 38.06 3.86
696 1015 3.064820 CCTGGTACATGAAAATACGTGGC 59.935 47.826 0.00 0.00 38.20 5.01
717 1036 0.322187 AATACGGTCCCTGTGGTTGC 60.322 55.000 0.00 0.00 0.00 4.17
726 1045 3.198236 CTGTGGTTGCAACGCCAGG 62.198 63.158 27.02 13.60 35.14 4.45
743 1062 2.202623 GCCTGGCTCTACACGTCG 60.203 66.667 12.43 0.00 0.00 5.12
871 1195 0.469070 TCCGTTTCGTTCTGGGGAAA 59.531 50.000 0.00 0.00 32.81 3.13
872 1196 1.072648 TCCGTTTCGTTCTGGGGAAAT 59.927 47.619 0.00 0.00 34.93 2.17
893 1217 4.418328 CCCAATTCCCGCACCCGA 62.418 66.667 0.00 0.00 36.29 5.14
908 1256 0.837272 CCCGAAATCCCTAGCTTCCA 59.163 55.000 0.00 0.00 0.00 3.53
974 1322 1.881602 GAGTGAAGACGGCGGTAGT 59.118 57.895 13.24 0.00 0.00 2.73
1054 1402 2.324330 CGCATGAGGTTTGGCGTCA 61.324 57.895 0.00 0.00 44.71 4.35
1109 1503 1.415289 CATGGATGCAGTAGAGGCTCA 59.585 52.381 18.26 0.00 0.00 4.26
1121 1515 4.509737 GGCTCACTACCGCGGTCC 62.510 72.222 38.01 25.05 0.00 4.46
1122 1516 3.755628 GCTCACTACCGCGGTCCA 61.756 66.667 38.01 18.62 0.00 4.02
1151 1545 2.632544 CCACTGCGGTAGGTGACGA 61.633 63.158 0.00 0.00 35.69 4.20
1152 1546 1.154016 CACTGCGGTAGGTGACGAG 60.154 63.158 0.00 0.00 35.69 4.18
1276 1670 2.360844 TGTGGTTGCTTTTCTCAACGA 58.639 42.857 0.00 0.00 43.37 3.85
1291 1685 0.387929 AACGAAGGAGAAGTGCACGA 59.612 50.000 12.01 0.00 0.00 4.35
1326 1720 1.001293 TCGATGAAGCTCAAGTGCTGT 59.999 47.619 0.00 0.00 43.24 4.40
1330 1724 0.948141 GAAGCTCAAGTGCTGTCGCT 60.948 55.000 0.00 0.00 43.24 4.93
1339 1733 1.375908 TGCTGTCGCTGGTGGATTC 60.376 57.895 0.00 0.00 36.97 2.52
1368 1762 0.684805 GGTGGGTGAGAGAGATCCGT 60.685 60.000 0.00 0.00 0.00 4.69
1374 1768 0.611896 TGAGAGAGATCCGTGGCACA 60.612 55.000 19.09 0.00 0.00 4.57
1419 1813 2.388310 AGCTAAGTTTCGAAGGCCTC 57.612 50.000 5.23 0.00 0.00 4.70
1422 1816 1.555533 CTAAGTTTCGAAGGCCTCCCT 59.444 52.381 5.23 0.00 45.77 4.20
1455 1849 0.250234 CGAGGCATTCAGTGGAAGGA 59.750 55.000 0.00 0.00 36.97 3.36
1456 1850 1.741732 CGAGGCATTCAGTGGAAGGAG 60.742 57.143 0.00 0.00 36.97 3.69
1462 1856 0.397941 TTCAGTGGAAGGAGTGCTGG 59.602 55.000 0.00 0.00 0.00 4.85
1509 1903 1.102154 TTATACCGCCGAAGAACCGA 58.898 50.000 0.00 0.00 0.00 4.69
1518 1912 1.066114 CGAAGAACCGACGTGAGCTC 61.066 60.000 6.82 6.82 0.00 4.09
1552 1948 1.731969 CCGTGACCCGTCGAAAGTC 60.732 63.158 0.00 0.00 33.66 3.01
1581 1977 0.804933 GTTGACGTGGAGATACCCGC 60.805 60.000 0.00 0.00 36.36 6.13
1622 2018 0.616111 AGATCCGCCTCCACAGTCTT 60.616 55.000 0.00 0.00 0.00 3.01
1624 2020 0.036010 ATCCGCCTCCACAGTCTTTG 60.036 55.000 0.00 0.00 0.00 2.77
1646 2042 0.304705 AGAGTTTGTTGCGCGTGAAG 59.695 50.000 8.43 0.00 0.00 3.02
1669 2065 1.092348 CGTCTGAGTACGGACCATCA 58.908 55.000 0.00 0.00 46.31 3.07
1677 2073 1.385756 TACGGACCATCATCGCCGAA 61.386 55.000 7.16 0.00 46.29 4.30
1710 2106 5.446143 ACGATTGTCTATCCAGTGATCTC 57.554 43.478 0.00 0.00 32.18 2.75
1774 2173 2.908940 CCGGATGAATGGCTGCCC 60.909 66.667 17.53 0.72 0.00 5.36
1795 2194 1.038130 ACGAAGGGGAGGATCTGACG 61.038 60.000 0.00 0.00 33.73 4.35
1798 2197 3.148279 GGGGAGGATCTGACGCGT 61.148 66.667 13.85 13.85 33.73 6.01
1839 2238 3.776158 TGGCAAAGTGGATGGCAC 58.224 55.556 0.00 0.00 46.85 5.01
1853 2252 7.790027 AGTGGATGGCACTATCTATGATTATC 58.210 38.462 0.00 0.00 0.00 1.75
1892 2291 6.503616 TTTGTGTTGTTTATCAATGAACGC 57.496 33.333 0.00 0.00 38.38 4.84
1893 2292 5.175090 TGTGTTGTTTATCAATGAACGCA 57.825 34.783 0.00 0.00 38.38 5.24
1901 2300 7.811653 TGTTTATCAATGAACGCATCAGTTTA 58.188 30.769 0.00 0.00 42.53 2.01
1913 2312 9.459640 GAACGCATCAGTTTATCTATGTAGTTA 57.540 33.333 0.00 0.00 34.00 2.24
1927 2326 9.869667 ATCTATGTAGTTACTGAACCAGTATCT 57.130 33.333 16.93 16.93 44.85 1.98
1934 2357 7.379750 AGTTACTGAACCAGTATCTCTGTTTC 58.620 38.462 7.54 0.00 44.85 2.78
1949 2372 8.641498 ATCTCTGTTTCTGAATTTGGTATGTT 57.359 30.769 0.00 0.00 0.00 2.71
1950 2373 8.099364 TCTCTGTTTCTGAATTTGGTATGTTC 57.901 34.615 0.00 0.00 0.00 3.18
1951 2374 6.898041 TCTGTTTCTGAATTTGGTATGTTCG 58.102 36.000 0.00 0.00 0.00 3.95
1955 2378 3.438781 TCTGAATTTGGTATGTTCGGTGC 59.561 43.478 0.00 0.00 31.71 5.01
1989 2412 9.733556 TGAACTTGGTATGTAATATTCAGTTGT 57.266 29.630 0.00 0.00 0.00 3.32
2103 2527 9.838975 TGAAATTATATGTTGCTAACTGTTGTG 57.161 29.630 2.69 0.00 0.00 3.33
2123 2547 6.000891 TGTGTGTCAGAATAAGAATGCAAC 57.999 37.500 0.00 0.00 0.00 4.17
2125 2549 4.754618 TGTGTCAGAATAAGAATGCAACGT 59.245 37.500 0.00 0.00 0.00 3.99
2129 2553 6.090763 TGTCAGAATAAGAATGCAACGTAGTG 59.909 38.462 0.00 0.00 45.00 2.74
2131 2555 4.935205 AGAATAAGAATGCAACGTAGTGCA 59.065 37.500 16.64 16.64 45.00 4.57
2138 2562 3.518634 TGCAACGTAGTGCATCATCTA 57.481 42.857 10.78 0.00 45.00 1.98
2140 2564 3.865164 TGCAACGTAGTGCATCATCTAAG 59.135 43.478 10.78 0.00 45.00 2.18
2147 2571 5.683302 CGTAGTGCATCATCTAAGTGTACTG 59.317 44.000 5.75 0.00 38.83 2.74
2157 2581 6.263392 TCATCTAAGTGTACTGTAGCTCATCC 59.737 42.308 0.00 0.00 0.00 3.51
2159 2583 5.949952 TCTAAGTGTACTGTAGCTCATCCAA 59.050 40.000 0.00 0.00 0.00 3.53
2170 2594 3.233507 AGCTCATCCAACAACCACATTT 58.766 40.909 0.00 0.00 0.00 2.32
2171 2595 3.256631 AGCTCATCCAACAACCACATTTC 59.743 43.478 0.00 0.00 0.00 2.17
2172 2596 3.005684 GCTCATCCAACAACCACATTTCA 59.994 43.478 0.00 0.00 0.00 2.69
2173 2597 4.549458 CTCATCCAACAACCACATTTCAC 58.451 43.478 0.00 0.00 0.00 3.18
2174 2598 4.214310 TCATCCAACAACCACATTTCACT 58.786 39.130 0.00 0.00 0.00 3.41
2175 2599 4.037803 TCATCCAACAACCACATTTCACTG 59.962 41.667 0.00 0.00 0.00 3.66
2176 2600 3.360867 TCCAACAACCACATTTCACTGT 58.639 40.909 0.00 0.00 0.00 3.55
2177 2601 3.130164 TCCAACAACCACATTTCACTGTG 59.870 43.478 0.17 0.17 44.92 3.66
2178 2602 2.859538 CAACAACCACATTTCACTGTGC 59.140 45.455 2.12 0.00 44.16 4.57
2179 2603 1.408702 ACAACCACATTTCACTGTGCC 59.591 47.619 2.12 0.00 44.16 5.01
2180 2604 1.408340 CAACCACATTTCACTGTGCCA 59.592 47.619 2.12 0.00 44.16 4.92
2181 2605 1.032014 ACCACATTTCACTGTGCCAC 58.968 50.000 2.12 0.00 44.16 5.01
2182 2606 1.031235 CCACATTTCACTGTGCCACA 58.969 50.000 2.12 0.00 44.16 4.17
2183 2607 1.614903 CCACATTTCACTGTGCCACAT 59.385 47.619 0.00 0.00 44.16 3.21
2184 2608 2.036217 CCACATTTCACTGTGCCACATT 59.964 45.455 0.00 0.00 44.16 2.71
2185 2609 3.493002 CCACATTTCACTGTGCCACATTT 60.493 43.478 0.00 0.00 44.16 2.32
2186 2610 3.737266 CACATTTCACTGTGCCACATTTC 59.263 43.478 0.00 0.00 40.03 2.17
2187 2611 3.384146 ACATTTCACTGTGCCACATTTCA 59.616 39.130 0.00 0.00 0.00 2.69
2188 2612 4.039488 ACATTTCACTGTGCCACATTTCAT 59.961 37.500 0.00 0.00 0.00 2.57
2189 2613 5.243507 ACATTTCACTGTGCCACATTTCATA 59.756 36.000 0.00 0.00 0.00 2.15
2190 2614 5.781210 TTTCACTGTGCCACATTTCATAA 57.219 34.783 0.00 0.00 0.00 1.90
2191 2615 4.764679 TCACTGTGCCACATTTCATAAC 57.235 40.909 0.00 0.00 0.00 1.89
2192 2616 4.397420 TCACTGTGCCACATTTCATAACT 58.603 39.130 0.00 0.00 0.00 2.24
2193 2617 5.555966 TCACTGTGCCACATTTCATAACTA 58.444 37.500 0.00 0.00 0.00 2.24
2194 2618 6.000840 TCACTGTGCCACATTTCATAACTAA 58.999 36.000 0.00 0.00 0.00 2.24
2195 2619 6.488344 TCACTGTGCCACATTTCATAACTAAA 59.512 34.615 0.00 0.00 0.00 1.85
2196 2620 6.803320 CACTGTGCCACATTTCATAACTAAAG 59.197 38.462 0.00 0.00 0.00 1.85
2197 2621 6.490040 ACTGTGCCACATTTCATAACTAAAGT 59.510 34.615 0.00 0.00 0.00 2.66
2198 2622 6.676950 TGTGCCACATTTCATAACTAAAGTG 58.323 36.000 0.00 0.00 0.00 3.16
2199 2623 5.572896 GTGCCACATTTCATAACTAAAGTGC 59.427 40.000 0.00 0.00 0.00 4.40
2200 2624 5.242615 TGCCACATTTCATAACTAAAGTGCA 59.757 36.000 0.00 0.00 0.00 4.57
2201 2625 6.071447 TGCCACATTTCATAACTAAAGTGCAT 60.071 34.615 0.00 0.00 0.00 3.96
2202 2626 6.813152 GCCACATTTCATAACTAAAGTGCATT 59.187 34.615 0.00 0.00 0.00 3.56
2203 2627 7.973388 GCCACATTTCATAACTAAAGTGCATTA 59.027 33.333 0.00 0.00 0.00 1.90
2204 2628 9.289303 CCACATTTCATAACTAAAGTGCATTAC 57.711 33.333 0.00 0.00 0.00 1.89
2205 2629 9.838975 CACATTTCATAACTAAAGTGCATTACA 57.161 29.630 0.00 0.00 0.00 2.41
2211 2635 9.665719 TCATAACTAAAGTGCATTACAAGATCA 57.334 29.630 0.00 0.00 0.00 2.92
2218 2642 8.915057 AAAGTGCATTACAAGATCATATAGCT 57.085 30.769 0.00 0.00 0.00 3.32
2219 2643 7.902387 AGTGCATTACAAGATCATATAGCTG 57.098 36.000 0.00 0.00 0.00 4.24
2220 2644 7.674120 AGTGCATTACAAGATCATATAGCTGA 58.326 34.615 0.00 0.00 0.00 4.26
2221 2645 8.319881 AGTGCATTACAAGATCATATAGCTGAT 58.680 33.333 0.00 0.00 38.57 2.90
2222 2646 9.591792 GTGCATTACAAGATCATATAGCTGATA 57.408 33.333 0.00 0.00 36.01 2.15
2223 2647 9.813446 TGCATTACAAGATCATATAGCTGATAG 57.187 33.333 0.00 0.00 36.01 2.08
2228 2652 7.999679 ACAAGATCATATAGCTGATAGAGAGC 58.000 38.462 0.00 0.00 36.01 4.09
2229 2653 7.614974 ACAAGATCATATAGCTGATAGAGAGCA 59.385 37.037 0.00 0.00 39.05 4.26
2230 2654 7.572523 AGATCATATAGCTGATAGAGAGCAC 57.427 40.000 0.00 0.00 39.05 4.40
2231 2655 7.348815 AGATCATATAGCTGATAGAGAGCACT 58.651 38.462 0.00 0.00 39.05 4.40
2232 2656 7.835682 AGATCATATAGCTGATAGAGAGCACTT 59.164 37.037 0.00 0.00 39.05 3.16
2233 2657 7.773489 TCATATAGCTGATAGAGAGCACTTT 57.227 36.000 0.00 0.00 39.05 2.66
2234 2658 8.870075 TCATATAGCTGATAGAGAGCACTTTA 57.130 34.615 0.00 0.00 39.05 1.85
2235 2659 8.955388 TCATATAGCTGATAGAGAGCACTTTAG 58.045 37.037 0.00 0.00 39.05 1.85
2236 2660 8.739039 CATATAGCTGATAGAGAGCACTTTAGT 58.261 37.037 0.00 0.00 39.05 2.24
2237 2661 9.967451 ATATAGCTGATAGAGAGCACTTTAGTA 57.033 33.333 0.00 0.00 39.05 1.82
2238 2662 6.385649 AGCTGATAGAGAGCACTTTAGTAC 57.614 41.667 0.00 0.00 39.05 2.73
2239 2663 5.888724 AGCTGATAGAGAGCACTTTAGTACA 59.111 40.000 0.00 0.00 39.05 2.90
2240 2664 6.549364 AGCTGATAGAGAGCACTTTAGTACAT 59.451 38.462 0.00 0.00 39.05 2.29
2241 2665 7.721842 AGCTGATAGAGAGCACTTTAGTACATA 59.278 37.037 0.00 0.00 39.05 2.29
2242 2666 8.353684 GCTGATAGAGAGCACTTTAGTACATAA 58.646 37.037 0.00 0.00 36.40 1.90
2247 2671 7.721402 AGAGAGCACTTTAGTACATAATCTGG 58.279 38.462 0.00 0.00 0.00 3.86
2248 2672 7.561722 AGAGAGCACTTTAGTACATAATCTGGA 59.438 37.037 0.00 0.00 0.00 3.86
2249 2673 7.721402 AGAGCACTTTAGTACATAATCTGGAG 58.279 38.462 0.00 0.00 0.00 3.86
2250 2674 6.284459 AGCACTTTAGTACATAATCTGGAGC 58.716 40.000 0.00 0.00 0.00 4.70
2251 2675 6.049149 GCACTTTAGTACATAATCTGGAGCA 58.951 40.000 0.00 0.00 0.00 4.26
2252 2676 6.708054 GCACTTTAGTACATAATCTGGAGCAT 59.292 38.462 0.00 0.00 0.00 3.79
2253 2677 7.095439 GCACTTTAGTACATAATCTGGAGCATC 60.095 40.741 0.00 0.00 0.00 3.91
2254 2678 8.147058 CACTTTAGTACATAATCTGGAGCATCT 58.853 37.037 0.00 0.00 33.73 2.90
2255 2679 8.364142 ACTTTAGTACATAATCTGGAGCATCTC 58.636 37.037 0.00 0.00 33.73 2.75
2256 2680 7.839680 TTAGTACATAATCTGGAGCATCTCA 57.160 36.000 0.00 0.00 33.73 3.27
2257 2681 6.737720 AGTACATAATCTGGAGCATCTCAA 57.262 37.500 0.00 0.00 33.73 3.02
2258 2682 7.129457 AGTACATAATCTGGAGCATCTCAAA 57.871 36.000 0.00 0.00 33.73 2.69
2259 2683 7.568349 AGTACATAATCTGGAGCATCTCAAAA 58.432 34.615 0.00 0.00 33.73 2.44
2260 2684 6.690194 ACATAATCTGGAGCATCTCAAAAC 57.310 37.500 0.00 0.00 33.73 2.43
2261 2685 6.421485 ACATAATCTGGAGCATCTCAAAACT 58.579 36.000 0.00 0.00 33.73 2.66
2262 2686 7.568349 ACATAATCTGGAGCATCTCAAAACTA 58.432 34.615 0.00 0.00 33.73 2.24
2263 2687 7.497249 ACATAATCTGGAGCATCTCAAAACTAC 59.503 37.037 0.00 0.00 33.73 2.73
2264 2688 4.890158 TCTGGAGCATCTCAAAACTACA 57.110 40.909 0.00 0.00 33.73 2.74
2265 2689 5.227569 TCTGGAGCATCTCAAAACTACAA 57.772 39.130 0.00 0.00 33.73 2.41
2266 2690 5.809001 TCTGGAGCATCTCAAAACTACAAT 58.191 37.500 0.00 0.00 33.73 2.71
2267 2691 5.645067 TCTGGAGCATCTCAAAACTACAATG 59.355 40.000 0.00 0.00 33.73 2.82
2268 2692 4.156556 TGGAGCATCTCAAAACTACAATGC 59.843 41.667 0.00 0.00 39.74 3.56
2269 2693 4.156556 GGAGCATCTCAAAACTACAATGCA 59.843 41.667 7.75 0.00 41.42 3.96
2270 2694 5.163581 GGAGCATCTCAAAACTACAATGCAT 60.164 40.000 7.75 0.00 41.42 3.96
2271 2695 6.038603 GGAGCATCTCAAAACTACAATGCATA 59.961 38.462 0.00 0.00 41.42 3.14
2272 2696 6.789262 AGCATCTCAAAACTACAATGCATAC 58.211 36.000 0.00 0.00 41.42 2.39
2273 2697 6.600822 AGCATCTCAAAACTACAATGCATACT 59.399 34.615 0.00 0.00 41.42 2.12
2274 2698 7.770433 AGCATCTCAAAACTACAATGCATACTA 59.230 33.333 0.00 0.00 41.42 1.82
2275 2699 8.066595 GCATCTCAAAACTACAATGCATACTAG 58.933 37.037 0.00 4.31 39.36 2.57
2276 2700 9.317936 CATCTCAAAACTACAATGCATACTAGA 57.682 33.333 14.61 2.40 0.00 2.43
2277 2701 9.890629 ATCTCAAAACTACAATGCATACTAGAA 57.109 29.630 14.61 0.00 0.00 2.10
2278 2702 9.371136 TCTCAAAACTACAATGCATACTAGAAG 57.629 33.333 14.61 4.40 0.00 2.85
2279 2703 9.155975 CTCAAAACTACAATGCATACTAGAAGT 57.844 33.333 14.61 4.92 0.00 3.01
2280 2704 9.502091 TCAAAACTACAATGCATACTAGAAGTT 57.498 29.630 14.61 9.56 0.00 2.66
2323 2747 8.458573 AACATATTACAAAAGACTTGACCACA 57.541 30.769 0.00 0.00 0.00 4.17
2324 2748 8.635765 ACATATTACAAAAGACTTGACCACAT 57.364 30.769 0.00 0.00 0.00 3.21
2325 2749 8.514594 ACATATTACAAAAGACTTGACCACATG 58.485 33.333 0.00 0.00 0.00 3.21
2326 2750 8.729756 CATATTACAAAAGACTTGACCACATGA 58.270 33.333 0.00 0.00 0.00 3.07
2327 2751 7.765695 ATTACAAAAGACTTGACCACATGAT 57.234 32.000 0.00 0.00 0.00 2.45
2328 2752 5.695851 ACAAAAGACTTGACCACATGATC 57.304 39.130 0.00 0.00 0.00 2.92
2329 2753 5.380043 ACAAAAGACTTGACCACATGATCT 58.620 37.500 0.00 0.00 0.00 2.75
2330 2754 5.240183 ACAAAAGACTTGACCACATGATCTG 59.760 40.000 0.00 0.00 0.00 2.90
2331 2755 3.623906 AGACTTGACCACATGATCTGG 57.376 47.619 0.00 0.00 34.62 3.86
2332 2756 3.176411 AGACTTGACCACATGATCTGGA 58.824 45.455 7.78 0.00 32.55 3.86
2333 2757 3.197333 AGACTTGACCACATGATCTGGAG 59.803 47.826 7.78 0.00 32.55 3.86
2334 2758 2.286872 CTTGACCACATGATCTGGAGC 58.713 52.381 7.78 0.87 32.55 4.70
2335 2759 1.278537 TGACCACATGATCTGGAGCA 58.721 50.000 7.78 3.20 32.55 4.26
2336 2760 1.841919 TGACCACATGATCTGGAGCAT 59.158 47.619 7.78 0.00 38.04 3.79
2337 2761 2.158856 TGACCACATGATCTGGAGCATC 60.159 50.000 7.78 0.00 34.88 3.91
2338 2762 2.104451 GACCACATGATCTGGAGCATCT 59.896 50.000 7.78 0.00 34.88 2.90
2339 2763 2.104451 ACCACATGATCTGGAGCATCTC 59.896 50.000 7.78 0.00 34.88 2.75
2340 2764 2.104281 CCACATGATCTGGAGCATCTCA 59.896 50.000 0.00 0.00 34.88 3.27
2341 2765 3.132160 CACATGATCTGGAGCATCTCAC 58.868 50.000 0.00 0.00 34.88 3.51
2342 2766 2.770232 ACATGATCTGGAGCATCTCACA 59.230 45.455 0.00 0.00 34.88 3.58
2343 2767 3.199289 ACATGATCTGGAGCATCTCACAA 59.801 43.478 0.00 0.00 34.88 3.33
2344 2768 3.986996 TGATCTGGAGCATCTCACAAA 57.013 42.857 0.00 0.00 33.73 2.83
2345 2769 3.603532 TGATCTGGAGCATCTCACAAAC 58.396 45.455 0.00 0.00 33.73 2.93
2346 2770 3.262660 TGATCTGGAGCATCTCACAAACT 59.737 43.478 0.00 0.00 33.73 2.66
2347 2771 4.467438 TGATCTGGAGCATCTCACAAACTA 59.533 41.667 0.00 0.00 33.73 2.24
2348 2772 4.193826 TCTGGAGCATCTCACAAACTAC 57.806 45.455 0.00 0.00 33.73 2.73
2349 2773 3.578282 TCTGGAGCATCTCACAAACTACA 59.422 43.478 0.00 0.00 33.73 2.74
2350 2774 3.930336 TGGAGCATCTCACAAACTACAG 58.070 45.455 0.00 0.00 33.73 2.74
2351 2775 3.324846 TGGAGCATCTCACAAACTACAGT 59.675 43.478 0.00 0.00 33.73 3.55
2352 2776 3.681897 GGAGCATCTCACAAACTACAGTG 59.318 47.826 0.00 0.00 37.10 3.66
2353 2777 3.070018 AGCATCTCACAAACTACAGTGC 58.930 45.455 0.00 0.00 35.76 4.40
2354 2778 2.807967 GCATCTCACAAACTACAGTGCA 59.192 45.455 0.00 0.00 35.76 4.57
2355 2779 3.364366 GCATCTCACAAACTACAGTGCAC 60.364 47.826 9.40 9.40 35.76 4.57
2356 2780 3.535280 TCTCACAAACTACAGTGCACA 57.465 42.857 21.04 0.00 35.76 4.57
2357 2781 3.194861 TCTCACAAACTACAGTGCACAC 58.805 45.455 21.04 0.00 35.76 3.82
2358 2782 3.118775 TCTCACAAACTACAGTGCACACT 60.119 43.478 21.04 5.51 43.61 3.55
2359 2783 4.098807 TCTCACAAACTACAGTGCACACTA 59.901 41.667 21.04 6.47 40.20 2.74
2360 2784 4.368315 TCACAAACTACAGTGCACACTAG 58.632 43.478 21.04 17.81 40.20 2.57
2361 2785 4.098807 TCACAAACTACAGTGCACACTAGA 59.901 41.667 21.04 0.00 40.20 2.43
2362 2786 4.808895 CACAAACTACAGTGCACACTAGAA 59.191 41.667 21.04 0.00 40.20 2.10
2363 2787 5.050490 ACAAACTACAGTGCACACTAGAAG 58.950 41.667 21.04 9.54 40.20 2.85
2364 2788 4.939052 AACTACAGTGCACACTAGAAGT 57.061 40.909 21.04 10.17 40.20 3.01
2365 2789 4.939052 ACTACAGTGCACACTAGAAGTT 57.061 40.909 21.04 0.00 40.20 2.66
2366 2790 5.277857 ACTACAGTGCACACTAGAAGTTT 57.722 39.130 21.04 0.00 40.20 2.66
2367 2791 5.671493 ACTACAGTGCACACTAGAAGTTTT 58.329 37.500 21.04 0.00 40.20 2.43
2368 2792 6.812998 ACTACAGTGCACACTAGAAGTTTTA 58.187 36.000 21.04 0.00 40.20 1.52
2369 2793 6.924060 ACTACAGTGCACACTAGAAGTTTTAG 59.076 38.462 21.04 4.27 40.20 1.85
2370 2794 5.914033 ACAGTGCACACTAGAAGTTTTAGA 58.086 37.500 21.04 0.00 40.20 2.10
2371 2795 6.525629 ACAGTGCACACTAGAAGTTTTAGAT 58.474 36.000 21.04 0.00 40.20 1.98
2372 2796 6.647067 ACAGTGCACACTAGAAGTTTTAGATC 59.353 38.462 21.04 0.00 40.20 2.75
2373 2797 6.091441 CAGTGCACACTAGAAGTTTTAGATCC 59.909 42.308 21.04 0.00 40.20 3.36
2374 2798 5.932303 GTGCACACTAGAAGTTTTAGATCCA 59.068 40.000 13.17 0.00 0.00 3.41
2375 2799 6.091441 GTGCACACTAGAAGTTTTAGATCCAG 59.909 42.308 13.17 0.00 0.00 3.86
2376 2800 6.166982 GCACACTAGAAGTTTTAGATCCAGT 58.833 40.000 7.41 0.00 0.00 4.00
2377 2801 7.039293 TGCACACTAGAAGTTTTAGATCCAGTA 60.039 37.037 7.41 0.00 0.00 2.74
2378 2802 7.275999 GCACACTAGAAGTTTTAGATCCAGTAC 59.724 40.741 7.41 0.00 0.00 2.73
2379 2803 8.524487 CACACTAGAAGTTTTAGATCCAGTACT 58.476 37.037 7.41 0.00 0.00 2.73
2380 2804 9.750783 ACACTAGAAGTTTTAGATCCAGTACTA 57.249 33.333 7.41 0.00 0.00 1.82
2406 2830 9.787435 AATAACATACTACAAAAGACTTGACCA 57.213 29.630 0.00 0.00 0.00 4.02
2407 2831 7.492352 AACATACTACAAAAGACTTGACCAC 57.508 36.000 0.00 0.00 0.00 4.16
2408 2832 6.588204 ACATACTACAAAAGACTTGACCACA 58.412 36.000 0.00 0.00 0.00 4.17
2409 2833 7.224297 ACATACTACAAAAGACTTGACCACAT 58.776 34.615 0.00 0.00 0.00 3.21
2410 2834 7.173218 ACATACTACAAAAGACTTGACCACATG 59.827 37.037 0.00 0.00 0.00 3.21
2411 2835 5.680619 ACTACAAAAGACTTGACCACATGA 58.319 37.500 0.00 0.00 0.00 3.07
2412 2836 6.299141 ACTACAAAAGACTTGACCACATGAT 58.701 36.000 0.00 0.00 0.00 2.45
2413 2837 5.695851 ACAAAAGACTTGACCACATGATC 57.304 39.130 0.00 0.00 0.00 2.92
2414 2838 5.380043 ACAAAAGACTTGACCACATGATCT 58.620 37.500 0.00 0.00 0.00 2.75
2415 2839 5.240183 ACAAAAGACTTGACCACATGATCTG 59.760 40.000 0.00 0.00 0.00 2.90
2416 2840 3.623906 AGACTTGACCACATGATCTGG 57.376 47.619 0.00 0.00 34.62 3.86
2417 2841 3.176411 AGACTTGACCACATGATCTGGA 58.824 45.455 7.78 0.00 32.55 3.86
2418 2842 3.197333 AGACTTGACCACATGATCTGGAG 59.803 47.826 7.78 0.00 32.55 3.86
2419 2843 2.286872 CTTGACCACATGATCTGGAGC 58.713 52.381 7.78 0.87 32.55 4.70
2420 2844 1.278537 TGACCACATGATCTGGAGCA 58.721 50.000 7.78 3.20 32.55 4.26
2421 2845 1.841919 TGACCACATGATCTGGAGCAT 59.158 47.619 7.78 0.00 38.04 3.79
2429 2853 3.918294 TGATCTGGAGCATGATCACAA 57.082 42.857 13.85 0.00 42.58 3.33
2430 2854 4.224991 TGATCTGGAGCATGATCACAAA 57.775 40.909 13.85 0.00 42.58 2.83
2431 2855 3.943381 TGATCTGGAGCATGATCACAAAC 59.057 43.478 13.85 1.86 42.58 2.93
2432 2856 3.421919 TCTGGAGCATGATCACAAACA 57.578 42.857 13.85 0.00 0.00 2.83
2433 2857 3.340928 TCTGGAGCATGATCACAAACAG 58.659 45.455 13.85 10.23 0.00 3.16
2434 2858 3.008266 TCTGGAGCATGATCACAAACAGA 59.992 43.478 13.85 12.37 0.00 3.41
2435 2859 3.753815 TGGAGCATGATCACAAACAGAA 58.246 40.909 13.85 0.00 0.00 3.02
2436 2860 3.503363 TGGAGCATGATCACAAACAGAAC 59.497 43.478 13.85 0.00 0.00 3.01
2437 2861 3.503363 GGAGCATGATCACAAACAGAACA 59.497 43.478 13.85 0.00 0.00 3.18
2438 2862 4.157289 GGAGCATGATCACAAACAGAACAT 59.843 41.667 13.85 0.00 0.00 2.71
2439 2863 5.055642 AGCATGATCACAAACAGAACATG 57.944 39.130 0.00 8.49 44.36 3.21
2440 2864 4.521639 AGCATGATCACAAACAGAACATGT 59.478 37.500 0.00 0.00 43.80 3.21
2460 2884 4.797471 TGTTCATTAACATGTTCTGCAGC 58.203 39.130 15.85 3.94 40.69 5.25
2461 2885 4.520111 TGTTCATTAACATGTTCTGCAGCT 59.480 37.500 15.85 0.00 40.69 4.24
2462 2886 4.690184 TCATTAACATGTTCTGCAGCTG 57.310 40.909 15.85 10.11 0.00 4.24
2463 2887 4.325972 TCATTAACATGTTCTGCAGCTGA 58.674 39.130 20.43 6.03 0.00 4.26
2464 2888 4.945543 TCATTAACATGTTCTGCAGCTGAT 59.054 37.500 20.43 0.00 0.00 2.90
2465 2889 4.952262 TTAACATGTTCTGCAGCTGATC 57.048 40.909 20.43 0.12 0.00 2.92
2466 2890 2.484742 ACATGTTCTGCAGCTGATCA 57.515 45.000 20.43 13.63 0.00 2.92
2467 2891 3.000684 ACATGTTCTGCAGCTGATCAT 57.999 42.857 20.43 16.32 0.00 2.45
2468 2892 4.146745 ACATGTTCTGCAGCTGATCATA 57.853 40.909 20.43 0.00 0.00 2.15
2469 2893 4.520179 ACATGTTCTGCAGCTGATCATAA 58.480 39.130 20.43 2.89 0.00 1.90
2470 2894 4.575236 ACATGTTCTGCAGCTGATCATAAG 59.425 41.667 20.43 13.65 0.00 1.73
2471 2895 2.941064 TGTTCTGCAGCTGATCATAAGC 59.059 45.455 20.43 0.00 41.15 3.09
2472 2896 2.941064 GTTCTGCAGCTGATCATAAGCA 59.059 45.455 20.43 13.31 43.37 3.91
2473 2897 3.271055 TCTGCAGCTGATCATAAGCAA 57.729 42.857 20.43 6.11 43.37 3.91
2474 2898 3.613030 TCTGCAGCTGATCATAAGCAAA 58.387 40.909 20.43 2.43 43.37 3.68
2475 2899 4.011698 TCTGCAGCTGATCATAAGCAAAA 58.988 39.130 20.43 6.05 43.37 2.44
2476 2900 4.100707 TGCAGCTGATCATAAGCAAAAC 57.899 40.909 20.43 0.00 43.37 2.43
2477 2901 3.506844 TGCAGCTGATCATAAGCAAAACA 59.493 39.130 20.43 0.00 43.37 2.83
2478 2902 3.855950 GCAGCTGATCATAAGCAAAACAC 59.144 43.478 20.43 0.00 43.37 3.32
2479 2903 4.616604 GCAGCTGATCATAAGCAAAACACA 60.617 41.667 20.43 0.00 43.37 3.72
2480 2904 5.463286 CAGCTGATCATAAGCAAAACACAA 58.537 37.500 8.42 0.00 43.37 3.33
2481 2905 5.921976 CAGCTGATCATAAGCAAAACACAAA 59.078 36.000 8.42 0.00 43.37 2.83
2482 2906 6.421501 CAGCTGATCATAAGCAAAACACAAAA 59.578 34.615 8.42 0.00 43.37 2.44
2483 2907 7.117236 CAGCTGATCATAAGCAAAACACAAAAT 59.883 33.333 8.42 0.00 43.37 1.82
2484 2908 8.306038 AGCTGATCATAAGCAAAACACAAAATA 58.694 29.630 8.02 0.00 43.37 1.40
2485 2909 8.924691 GCTGATCATAAGCAAAACACAAAATAA 58.075 29.630 0.00 0.00 40.52 1.40
2513 2937 8.958060 TGATATATTTTACTCCAGCTAGACCT 57.042 34.615 0.00 0.00 0.00 3.85
2514 2938 8.807118 TGATATATTTTACTCCAGCTAGACCTG 58.193 37.037 0.00 0.00 0.00 4.00
2515 2939 3.611766 TTTTACTCCAGCTAGACCTGC 57.388 47.619 0.00 0.00 0.00 4.85
2516 2940 2.231716 TTACTCCAGCTAGACCTGCA 57.768 50.000 0.00 0.00 0.00 4.41
2517 2941 2.461300 TACTCCAGCTAGACCTGCAT 57.539 50.000 0.00 0.00 0.00 3.96
2518 2942 0.829333 ACTCCAGCTAGACCTGCATG 59.171 55.000 0.00 0.00 0.00 4.06
2519 2943 0.829333 CTCCAGCTAGACCTGCATGT 59.171 55.000 0.00 0.00 0.00 3.21
2520 2944 0.826715 TCCAGCTAGACCTGCATGTC 59.173 55.000 13.65 13.65 35.43 3.06
2521 2945 0.829333 CCAGCTAGACCTGCATGTCT 59.171 55.000 25.05 25.05 46.90 3.41
2522 2946 1.202510 CCAGCTAGACCTGCATGTCTC 60.203 57.143 25.37 13.88 44.30 3.36
2523 2947 1.755959 CAGCTAGACCTGCATGTCTCT 59.244 52.381 25.37 15.73 44.30 3.10
2524 2948 2.168106 CAGCTAGACCTGCATGTCTCTT 59.832 50.000 25.37 11.38 44.30 2.85
2525 2949 2.836981 AGCTAGACCTGCATGTCTCTTT 59.163 45.455 25.37 11.07 44.30 2.52
2526 2950 3.262915 AGCTAGACCTGCATGTCTCTTTT 59.737 43.478 25.37 9.51 44.30 2.27
2527 2951 3.620821 GCTAGACCTGCATGTCTCTTTTC 59.379 47.826 25.37 9.66 44.30 2.29
2528 2952 3.064900 AGACCTGCATGTCTCTTTTCC 57.935 47.619 17.79 0.00 41.75 3.13
2529 2953 2.641815 AGACCTGCATGTCTCTTTTCCT 59.358 45.455 17.79 0.00 41.75 3.36
2530 2954 3.840666 AGACCTGCATGTCTCTTTTCCTA 59.159 43.478 17.79 0.00 41.75 2.94
2531 2955 4.472833 AGACCTGCATGTCTCTTTTCCTAT 59.527 41.667 17.79 0.00 41.75 2.57
2532 2956 4.775236 ACCTGCATGTCTCTTTTCCTATC 58.225 43.478 0.00 0.00 0.00 2.08
2533 2957 4.472833 ACCTGCATGTCTCTTTTCCTATCT 59.527 41.667 0.00 0.00 0.00 1.98
2534 2958 5.055812 CCTGCATGTCTCTTTTCCTATCTC 58.944 45.833 0.00 0.00 0.00 2.75
2535 2959 4.686972 TGCATGTCTCTTTTCCTATCTCG 58.313 43.478 0.00 0.00 0.00 4.04
2536 2960 4.054671 GCATGTCTCTTTTCCTATCTCGG 58.945 47.826 0.00 0.00 0.00 4.63
2537 2961 4.442192 GCATGTCTCTTTTCCTATCTCGGT 60.442 45.833 0.00 0.00 0.00 4.69
2538 2962 5.665459 CATGTCTCTTTTCCTATCTCGGTT 58.335 41.667 0.00 0.00 0.00 4.44
2539 2963 5.326200 TGTCTCTTTTCCTATCTCGGTTC 57.674 43.478 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.483013 GGGGTGAGGTTTTGCAAGTTTC 60.483 50.000 0.00 0.00 0.00 2.78
150 151 1.198759 GGACCCCACTCAACCAGCTA 61.199 60.000 0.00 0.00 0.00 3.32
151 152 2.529744 GGACCCCACTCAACCAGCT 61.530 63.158 0.00 0.00 0.00 4.24
274 569 2.300967 TGGAGGAGATTGCCCGCTT 61.301 57.895 0.00 0.00 0.00 4.68
276 571 2.514824 GTGGAGGAGATTGCCCGC 60.515 66.667 0.00 0.00 0.00 6.13
277 572 2.190578 GGTGGAGGAGATTGCCCG 59.809 66.667 0.00 0.00 0.00 6.13
279 574 2.597903 GGGGTGGAGGAGATTGCC 59.402 66.667 0.00 0.00 0.00 4.52
303 600 2.285743 AAGGAGGTGGAGAGGGCC 60.286 66.667 0.00 0.00 0.00 5.80
397 708 2.233922 TCAGTCGGAAGATGAAGGGAAC 59.766 50.000 0.00 0.00 45.19 3.62
419 731 2.053627 CGATTTTGCTTGTCTTGTGCC 58.946 47.619 0.00 0.00 0.00 5.01
446 758 2.905415 TCCATCATTCCAGTTGGCTT 57.095 45.000 0.00 0.00 34.44 4.35
503 822 0.898320 CTGTGAAGTCGGACATCCCT 59.102 55.000 11.27 0.00 0.00 4.20
507 826 1.296715 GGCCTGTGAAGTCGGACAT 59.703 57.895 11.27 0.00 0.00 3.06
512 831 0.742281 CATCAGGGCCTGTGAAGTCG 60.742 60.000 31.60 5.09 32.61 4.18
543 862 3.782443 GGGCAGGGACCGATTCGT 61.782 66.667 5.20 0.00 0.00 3.85
563 882 2.041206 GAGGTGGATTACTCGGCCCC 62.041 65.000 0.00 0.00 0.00 5.80
578 897 2.611964 ATCTCAGGCCCGGATGAGGT 62.612 60.000 22.96 17.20 42.62 3.85
672 991 4.570772 CCACGTATTTTCATGTACCAGGAG 59.429 45.833 0.00 0.00 0.00 3.69
676 995 3.011119 GGCCACGTATTTTCATGTACCA 58.989 45.455 0.00 0.00 0.00 3.25
696 1015 0.326927 AACCACAGGGACCGTATTGG 59.673 55.000 10.99 10.99 40.18 3.16
726 1045 2.202623 CGACGTGTAGAGCCAGGC 60.203 66.667 1.84 1.84 0.00 4.85
752 1071 1.727880 GGCATACAACGAAGTACGCAA 59.272 47.619 10.88 0.00 45.00 4.85
764 1083 1.376683 GGGCTGACGTGGCATACAA 60.377 57.895 11.40 0.00 0.00 2.41
787 1106 2.994995 TCCATCCTGACGTGCGGT 60.995 61.111 0.00 0.00 0.00 5.68
871 1195 0.975556 GGTGCGGGAATTGGGGAAAT 60.976 55.000 0.00 0.00 0.00 2.17
872 1196 1.608046 GGTGCGGGAATTGGGGAAA 60.608 57.895 0.00 0.00 0.00 3.13
893 1217 2.858768 TCCCATTGGAAGCTAGGGATTT 59.141 45.455 3.62 0.00 43.39 2.17
959 1307 1.210931 CGAACTACCGCCGTCTTCA 59.789 57.895 0.00 0.00 0.00 3.02
1040 1388 2.429930 CCCTGACGCCAAACCTCA 59.570 61.111 0.00 0.00 0.00 3.86
1101 1495 3.141488 CCGCGGTAGTGAGCCTCT 61.141 66.667 19.50 0.00 0.00 3.69
1109 1503 3.066814 GGACTGGACCGCGGTAGT 61.067 66.667 34.36 31.33 0.00 2.73
1121 1515 2.359602 CAGTGGCCTGCAGGACTG 60.360 66.667 37.95 33.32 45.91 3.51
1130 1524 3.706373 CACCTACCGCAGTGGCCT 61.706 66.667 3.32 0.00 43.94 5.19
1151 1545 3.386237 GCGTCACAGCCTCCTCCT 61.386 66.667 0.00 0.00 0.00 3.69
1210 1604 4.704833 GCTCACCTCCGCTGGCAA 62.705 66.667 0.00 0.00 0.00 4.52
1248 1642 2.443887 AAAGCAACCACATGTCATGC 57.556 45.000 12.91 15.69 37.28 4.06
1255 1649 2.948979 TCGTTGAGAAAAGCAACCACAT 59.051 40.909 0.00 0.00 41.88 3.21
1276 1670 0.687354 ACCATCGTGCACTTCTCCTT 59.313 50.000 16.19 0.00 0.00 3.36
1303 1697 1.329906 GCACTTGAGCTTCATCGATGG 59.670 52.381 24.61 11.15 0.00 3.51
1326 1720 1.071542 TCAAACTGAATCCACCAGCGA 59.928 47.619 0.00 0.00 35.14 4.93
1330 1724 1.522668 CGCTCAAACTGAATCCACCA 58.477 50.000 0.00 0.00 0.00 4.17
1339 1733 1.227823 TCACCCACCGCTCAAACTG 60.228 57.895 0.00 0.00 0.00 3.16
1419 1813 0.178767 TCGACCATGCTTGATCAGGG 59.821 55.000 6.99 2.86 43.08 4.45
1422 1816 0.462581 GCCTCGACCATGCTTGATCA 60.463 55.000 0.22 0.00 0.00 2.92
1455 1849 2.900106 GCCCAAGTCCTCCAGCACT 61.900 63.158 0.00 0.00 0.00 4.40
1456 1850 2.360475 GCCCAAGTCCTCCAGCAC 60.360 66.667 0.00 0.00 0.00 4.40
1462 1856 4.821589 CTCGCCGCCCAAGTCCTC 62.822 72.222 0.00 0.00 0.00 3.71
1480 1874 5.886474 TCTTCGGCGGTATAATCTCTATCAT 59.114 40.000 7.21 0.00 0.00 2.45
1509 1903 0.456221 CCATTACCTCGAGCTCACGT 59.544 55.000 15.40 8.47 34.70 4.49
1518 1912 2.280186 GGAGCCGCCATTACCTCG 60.280 66.667 0.00 0.00 36.34 4.63
1552 1948 1.959226 CACGTCAACCACCTTCCCG 60.959 63.158 0.00 0.00 0.00 5.14
1555 1951 0.391597 TCTCCACGTCAACCACCTTC 59.608 55.000 0.00 0.00 0.00 3.46
1622 2018 0.028770 CGCGCAACAAACTCTTCCAA 59.971 50.000 8.75 0.00 0.00 3.53
1624 2020 0.657368 CACGCGCAACAAACTCTTCC 60.657 55.000 5.73 0.00 0.00 3.46
1646 2042 1.154073 GTCCGTACTCAGACGCCAC 60.154 63.158 0.00 0.00 41.56 5.01
1669 2065 2.732597 CGTCTTCTTCTTCTTCGGCGAT 60.733 50.000 11.76 0.00 0.00 4.58
1710 2106 4.564372 CACGATCAGTAACCTTCATGTGAG 59.436 45.833 0.00 0.00 0.00 3.51
1774 2173 1.134670 GTCAGATCCTCCCCTTCGTTG 60.135 57.143 0.00 0.00 0.00 4.10
1795 2194 1.128692 GTGGTGAATCTGTGCTTACGC 59.871 52.381 0.00 0.00 0.00 4.42
1798 2197 3.402110 CACTGTGGTGAATCTGTGCTTA 58.598 45.455 0.00 0.00 45.61 3.09
1805 2204 1.901591 CCAAGCACTGTGGTGAATCT 58.098 50.000 13.85 0.00 45.61 2.40
1853 2252 8.186178 ACAACACAAATAAACTAGATAGCTCG 57.814 34.615 0.00 0.00 0.00 5.03
1870 2269 5.582550 TGCGTTCATTGATAAACAACACAA 58.417 33.333 0.00 0.00 41.52 3.33
1876 2275 5.878332 ACTGATGCGTTCATTGATAAACA 57.122 34.783 0.00 0.00 32.72 2.83
1882 2281 7.495606 ACATAGATAAACTGATGCGTTCATTGA 59.504 33.333 0.00 0.00 32.72 2.57
1884 2283 7.792374 ACATAGATAAACTGATGCGTTCATT 57.208 32.000 0.00 0.00 32.72 2.57
1891 2290 9.967346 TCAGTAACTACATAGATAAACTGATGC 57.033 33.333 0.00 0.00 0.00 3.91
1926 2325 7.017645 CGAACATACCAAATTCAGAAACAGAG 58.982 38.462 0.00 0.00 0.00 3.35
1927 2326 6.072728 CCGAACATACCAAATTCAGAAACAGA 60.073 38.462 0.00 0.00 0.00 3.41
1934 2357 3.427503 GGCACCGAACATACCAAATTCAG 60.428 47.826 0.00 0.00 0.00 3.02
1955 2378 6.642707 TTACATACCAAGTTCACAAAAGGG 57.357 37.500 0.00 0.00 0.00 3.95
2001 2424 7.744733 TGCATATTAGATACCAAGTTCATCCA 58.255 34.615 0.00 0.00 0.00 3.41
2043 2466 6.832804 CATGAACTCATGCATAGCTTCATAG 58.167 40.000 17.87 11.97 45.92 2.23
2056 2479 9.750125 ATTTCATTTCATCATCATGAACTCATG 57.250 29.630 12.61 12.61 46.71 3.07
2078 2501 9.840427 ACACAACAGTTAGCAACATATAATTTC 57.160 29.630 0.00 0.00 0.00 2.17
2086 2509 3.944650 TGACACACAACAGTTAGCAACAT 59.055 39.130 0.00 0.00 0.00 2.71
2089 2512 3.867857 TCTGACACACAACAGTTAGCAA 58.132 40.909 0.00 0.00 35.84 3.91
2103 2527 5.283060 ACGTTGCATTCTTATTCTGACAC 57.717 39.130 0.00 0.00 0.00 3.67
2123 2547 5.683302 CAGTACACTTAGATGATGCACTACG 59.317 44.000 0.00 0.00 0.00 3.51
2125 2549 6.775594 ACAGTACACTTAGATGATGCACTA 57.224 37.500 0.00 0.00 0.00 2.74
2129 2553 5.837437 AGCTACAGTACACTTAGATGATGC 58.163 41.667 0.00 0.00 0.00 3.91
2131 2555 7.040062 GGATGAGCTACAGTACACTTAGATGAT 60.040 40.741 0.00 0.00 0.00 2.45
2136 2560 5.836821 TGGATGAGCTACAGTACACTTAG 57.163 43.478 0.00 0.00 0.00 2.18
2138 2562 4.283467 TGTTGGATGAGCTACAGTACACTT 59.717 41.667 0.00 0.00 0.00 3.16
2140 2564 4.188247 TGTTGGATGAGCTACAGTACAC 57.812 45.455 0.00 0.00 0.00 2.90
2147 2571 2.778299 TGTGGTTGTTGGATGAGCTAC 58.222 47.619 0.00 0.00 0.00 3.58
2170 2594 4.397420 AGTTATGAAATGTGGCACAGTGA 58.603 39.130 26.04 13.94 41.80 3.41
2171 2595 4.771590 AGTTATGAAATGTGGCACAGTG 57.228 40.909 26.04 0.00 41.80 3.66
2172 2596 6.490040 ACTTTAGTTATGAAATGTGGCACAGT 59.510 34.615 26.04 21.24 41.80 3.55
2173 2597 6.803320 CACTTTAGTTATGAAATGTGGCACAG 59.197 38.462 26.04 9.15 41.80 3.66
2174 2598 6.676950 CACTTTAGTTATGAAATGTGGCACA 58.323 36.000 24.36 24.36 0.00 4.57
2175 2599 5.572896 GCACTTTAGTTATGAAATGTGGCAC 59.427 40.000 11.55 11.55 0.00 5.01
2176 2600 5.242615 TGCACTTTAGTTATGAAATGTGGCA 59.757 36.000 0.00 0.00 0.00 4.92
2177 2601 5.708948 TGCACTTTAGTTATGAAATGTGGC 58.291 37.500 0.00 0.00 0.00 5.01
2178 2602 9.289303 GTAATGCACTTTAGTTATGAAATGTGG 57.711 33.333 0.00 0.00 0.00 4.17
2179 2603 9.838975 TGTAATGCACTTTAGTTATGAAATGTG 57.161 29.630 0.00 0.00 0.00 3.21
2185 2609 9.665719 TGATCTTGTAATGCACTTTAGTTATGA 57.334 29.630 0.00 0.00 0.00 2.15
2193 2617 8.781196 CAGCTATATGATCTTGTAATGCACTTT 58.219 33.333 0.00 0.00 0.00 2.66
2194 2618 8.152898 TCAGCTATATGATCTTGTAATGCACTT 58.847 33.333 0.00 0.00 0.00 3.16
2195 2619 7.674120 TCAGCTATATGATCTTGTAATGCACT 58.326 34.615 0.00 0.00 0.00 4.40
2196 2620 7.895975 TCAGCTATATGATCTTGTAATGCAC 57.104 36.000 0.00 0.00 0.00 4.57
2197 2621 9.813446 CTATCAGCTATATGATCTTGTAATGCA 57.187 33.333 0.00 0.00 40.40 3.96
2202 2626 9.119418 GCTCTCTATCAGCTATATGATCTTGTA 57.881 37.037 0.00 0.00 40.40 2.41
2203 2627 7.614974 TGCTCTCTATCAGCTATATGATCTTGT 59.385 37.037 0.00 0.00 40.40 3.16
2204 2628 7.916977 GTGCTCTCTATCAGCTATATGATCTTG 59.083 40.741 0.00 0.00 40.40 3.02
2205 2629 7.835682 AGTGCTCTCTATCAGCTATATGATCTT 59.164 37.037 0.00 0.00 40.40 2.40
2206 2630 7.348815 AGTGCTCTCTATCAGCTATATGATCT 58.651 38.462 0.00 0.00 40.40 2.75
2207 2631 7.572523 AGTGCTCTCTATCAGCTATATGATC 57.427 40.000 0.00 0.00 40.40 2.92
2208 2632 7.959658 AAGTGCTCTCTATCAGCTATATGAT 57.040 36.000 0.00 0.00 42.52 2.45
2209 2633 7.773489 AAAGTGCTCTCTATCAGCTATATGA 57.227 36.000 0.00 0.00 37.79 2.15
2210 2634 8.739039 ACTAAAGTGCTCTCTATCAGCTATATG 58.261 37.037 0.00 0.00 37.79 1.78
2211 2635 8.877864 ACTAAAGTGCTCTCTATCAGCTATAT 57.122 34.615 0.00 0.00 37.79 0.86
2212 2636 9.221933 GTACTAAAGTGCTCTCTATCAGCTATA 57.778 37.037 0.00 0.00 37.79 1.31
2213 2637 7.721842 TGTACTAAAGTGCTCTCTATCAGCTAT 59.278 37.037 0.00 0.00 37.79 2.97
2214 2638 7.054751 TGTACTAAAGTGCTCTCTATCAGCTA 58.945 38.462 0.00 0.00 37.79 3.32
2215 2639 5.888724 TGTACTAAAGTGCTCTCTATCAGCT 59.111 40.000 0.00 0.00 37.79 4.24
2216 2640 6.137794 TGTACTAAAGTGCTCTCTATCAGC 57.862 41.667 0.00 0.00 37.40 4.26
2221 2645 8.851145 CCAGATTATGTACTAAAGTGCTCTCTA 58.149 37.037 0.00 0.00 0.00 2.43
2222 2646 7.561722 TCCAGATTATGTACTAAAGTGCTCTCT 59.438 37.037 0.00 0.00 0.00 3.10
2223 2647 7.717568 TCCAGATTATGTACTAAAGTGCTCTC 58.282 38.462 0.00 0.00 0.00 3.20
2224 2648 7.661536 TCCAGATTATGTACTAAAGTGCTCT 57.338 36.000 0.00 0.00 0.00 4.09
2225 2649 6.422400 GCTCCAGATTATGTACTAAAGTGCTC 59.578 42.308 0.00 0.00 0.00 4.26
2226 2650 6.127054 TGCTCCAGATTATGTACTAAAGTGCT 60.127 38.462 0.00 0.00 0.00 4.40
2227 2651 6.049149 TGCTCCAGATTATGTACTAAAGTGC 58.951 40.000 0.00 0.00 0.00 4.40
2228 2652 8.147058 AGATGCTCCAGATTATGTACTAAAGTG 58.853 37.037 0.00 0.00 0.00 3.16
2229 2653 8.256356 AGATGCTCCAGATTATGTACTAAAGT 57.744 34.615 0.00 0.00 0.00 2.66
2230 2654 8.363390 TGAGATGCTCCAGATTATGTACTAAAG 58.637 37.037 0.00 0.00 0.00 1.85
2231 2655 8.250143 TGAGATGCTCCAGATTATGTACTAAA 57.750 34.615 0.00 0.00 0.00 1.85
2232 2656 7.839680 TGAGATGCTCCAGATTATGTACTAA 57.160 36.000 0.00 0.00 0.00 2.24
2233 2657 7.839680 TTGAGATGCTCCAGATTATGTACTA 57.160 36.000 0.00 0.00 0.00 1.82
2234 2658 6.737720 TTGAGATGCTCCAGATTATGTACT 57.262 37.500 0.00 0.00 0.00 2.73
2235 2659 7.497249 AGTTTTGAGATGCTCCAGATTATGTAC 59.503 37.037 0.00 0.00 0.00 2.90
2236 2660 7.568349 AGTTTTGAGATGCTCCAGATTATGTA 58.432 34.615 0.00 0.00 0.00 2.29
2237 2661 6.421485 AGTTTTGAGATGCTCCAGATTATGT 58.579 36.000 0.00 0.00 0.00 2.29
2238 2662 6.939132 AGTTTTGAGATGCTCCAGATTATG 57.061 37.500 0.00 0.00 0.00 1.90
2239 2663 7.568349 TGTAGTTTTGAGATGCTCCAGATTAT 58.432 34.615 0.00 0.00 0.00 1.28
2240 2664 6.946340 TGTAGTTTTGAGATGCTCCAGATTA 58.054 36.000 0.00 0.00 0.00 1.75
2241 2665 5.809001 TGTAGTTTTGAGATGCTCCAGATT 58.191 37.500 0.00 0.00 0.00 2.40
2242 2666 5.426689 TGTAGTTTTGAGATGCTCCAGAT 57.573 39.130 0.00 0.00 0.00 2.90
2243 2667 4.890158 TGTAGTTTTGAGATGCTCCAGA 57.110 40.909 0.00 0.00 0.00 3.86
2244 2668 5.675575 GCATTGTAGTTTTGAGATGCTCCAG 60.676 44.000 0.00 0.00 37.49 3.86
2245 2669 4.156556 GCATTGTAGTTTTGAGATGCTCCA 59.843 41.667 0.00 0.00 37.49 3.86
2246 2670 4.156556 TGCATTGTAGTTTTGAGATGCTCC 59.843 41.667 7.52 0.00 40.25 4.70
2247 2671 5.300969 TGCATTGTAGTTTTGAGATGCTC 57.699 39.130 7.52 0.00 40.25 4.26
2248 2672 5.909621 ATGCATTGTAGTTTTGAGATGCT 57.090 34.783 0.00 0.00 40.25 3.79
2249 2673 6.789262 AGTATGCATTGTAGTTTTGAGATGC 58.211 36.000 3.54 0.00 40.07 3.91
2250 2674 9.317936 TCTAGTATGCATTGTAGTTTTGAGATG 57.682 33.333 3.54 0.00 0.00 2.90
2251 2675 9.890629 TTCTAGTATGCATTGTAGTTTTGAGAT 57.109 29.630 3.54 0.00 0.00 2.75
2252 2676 9.371136 CTTCTAGTATGCATTGTAGTTTTGAGA 57.629 33.333 3.54 0.00 0.00 3.27
2253 2677 9.155975 ACTTCTAGTATGCATTGTAGTTTTGAG 57.844 33.333 3.54 4.67 0.00 3.02
2254 2678 9.502091 AACTTCTAGTATGCATTGTAGTTTTGA 57.498 29.630 3.54 0.00 0.00 2.69
2297 2721 9.562408 TGTGGTCAAGTCTTTTGTAATATGTTA 57.438 29.630 0.00 0.00 0.00 2.41
2298 2722 8.458573 TGTGGTCAAGTCTTTTGTAATATGTT 57.541 30.769 0.00 0.00 0.00 2.71
2299 2723 8.514594 CATGTGGTCAAGTCTTTTGTAATATGT 58.485 33.333 0.00 0.00 0.00 2.29
2300 2724 8.729756 TCATGTGGTCAAGTCTTTTGTAATATG 58.270 33.333 0.00 0.00 0.00 1.78
2301 2725 8.862325 TCATGTGGTCAAGTCTTTTGTAATAT 57.138 30.769 0.00 0.00 0.00 1.28
2302 2726 8.862325 ATCATGTGGTCAAGTCTTTTGTAATA 57.138 30.769 0.00 0.00 0.00 0.98
2303 2727 7.667219 AGATCATGTGGTCAAGTCTTTTGTAAT 59.333 33.333 0.00 0.00 0.00 1.89
2304 2728 6.998074 AGATCATGTGGTCAAGTCTTTTGTAA 59.002 34.615 0.00 0.00 0.00 2.41
2305 2729 6.427853 CAGATCATGTGGTCAAGTCTTTTGTA 59.572 38.462 0.00 0.00 0.00 2.41
2306 2730 5.240183 CAGATCATGTGGTCAAGTCTTTTGT 59.760 40.000 0.00 0.00 0.00 2.83
2307 2731 5.335426 CCAGATCATGTGGTCAAGTCTTTTG 60.335 44.000 0.00 0.00 0.00 2.44
2308 2732 4.763793 CCAGATCATGTGGTCAAGTCTTTT 59.236 41.667 0.00 0.00 0.00 2.27
2309 2733 4.042062 TCCAGATCATGTGGTCAAGTCTTT 59.958 41.667 0.00 0.00 36.37 2.52
2310 2734 3.584406 TCCAGATCATGTGGTCAAGTCTT 59.416 43.478 0.00 0.00 36.37 3.01
2311 2735 3.176411 TCCAGATCATGTGGTCAAGTCT 58.824 45.455 0.00 0.00 36.37 3.24
2312 2736 3.529533 CTCCAGATCATGTGGTCAAGTC 58.470 50.000 0.00 0.00 36.37 3.01
2313 2737 2.355513 GCTCCAGATCATGTGGTCAAGT 60.356 50.000 0.00 0.00 36.37 3.16
2314 2738 2.286872 GCTCCAGATCATGTGGTCAAG 58.713 52.381 0.00 0.00 36.37 3.02
2315 2739 1.629861 TGCTCCAGATCATGTGGTCAA 59.370 47.619 0.00 0.00 36.37 3.18
2316 2740 1.278537 TGCTCCAGATCATGTGGTCA 58.721 50.000 0.00 0.00 36.37 4.02
2317 2741 2.104451 AGATGCTCCAGATCATGTGGTC 59.896 50.000 0.00 0.00 36.37 4.02
2318 2742 2.104451 GAGATGCTCCAGATCATGTGGT 59.896 50.000 0.00 0.00 36.37 4.16
2319 2743 2.104281 TGAGATGCTCCAGATCATGTGG 59.896 50.000 0.00 0.00 36.28 4.17
2320 2744 3.132160 GTGAGATGCTCCAGATCATGTG 58.868 50.000 0.00 0.00 0.00 3.21
2321 2745 2.770232 TGTGAGATGCTCCAGATCATGT 59.230 45.455 0.00 0.00 0.00 3.21
2322 2746 3.470645 TGTGAGATGCTCCAGATCATG 57.529 47.619 0.00 0.00 0.00 3.07
2323 2747 4.080469 AGTTTGTGAGATGCTCCAGATCAT 60.080 41.667 0.00 0.00 0.00 2.45
2324 2748 3.262660 AGTTTGTGAGATGCTCCAGATCA 59.737 43.478 0.00 0.00 0.00 2.92
2325 2749 3.871485 AGTTTGTGAGATGCTCCAGATC 58.129 45.455 0.00 0.00 0.00 2.75
2326 2750 3.996921 AGTTTGTGAGATGCTCCAGAT 57.003 42.857 0.00 0.00 0.00 2.90
2327 2751 3.578282 TGTAGTTTGTGAGATGCTCCAGA 59.422 43.478 0.00 0.00 0.00 3.86
2328 2752 3.930336 TGTAGTTTGTGAGATGCTCCAG 58.070 45.455 0.00 0.00 0.00 3.86
2329 2753 3.324846 ACTGTAGTTTGTGAGATGCTCCA 59.675 43.478 0.00 0.00 0.00 3.86
2330 2754 3.681897 CACTGTAGTTTGTGAGATGCTCC 59.318 47.826 0.00 0.00 36.38 4.70
2331 2755 3.124297 GCACTGTAGTTTGTGAGATGCTC 59.876 47.826 0.00 0.00 36.38 4.26
2332 2756 3.070018 GCACTGTAGTTTGTGAGATGCT 58.930 45.455 0.00 0.00 36.38 3.79
2333 2757 2.807967 TGCACTGTAGTTTGTGAGATGC 59.192 45.455 0.00 0.00 36.38 3.91
2334 2758 3.809279 TGTGCACTGTAGTTTGTGAGATG 59.191 43.478 19.41 0.00 36.38 2.90
2335 2759 3.809832 GTGTGCACTGTAGTTTGTGAGAT 59.190 43.478 19.41 0.00 36.38 2.75
2336 2760 3.118775 AGTGTGCACTGTAGTTTGTGAGA 60.119 43.478 19.41 0.00 40.75 3.27
2337 2761 3.198068 AGTGTGCACTGTAGTTTGTGAG 58.802 45.455 19.41 0.00 40.75 3.51
2338 2762 3.260475 AGTGTGCACTGTAGTTTGTGA 57.740 42.857 19.41 0.00 40.75 3.58
2339 2763 4.368315 TCTAGTGTGCACTGTAGTTTGTG 58.632 43.478 19.41 0.00 42.52 3.33
2340 2764 4.665833 TCTAGTGTGCACTGTAGTTTGT 57.334 40.909 19.41 0.00 42.52 2.83
2341 2765 5.050490 ACTTCTAGTGTGCACTGTAGTTTG 58.950 41.667 19.41 13.46 42.52 2.93
2342 2766 5.277857 ACTTCTAGTGTGCACTGTAGTTT 57.722 39.130 19.41 5.07 42.52 2.66
2343 2767 4.939052 ACTTCTAGTGTGCACTGTAGTT 57.061 40.909 19.41 5.38 42.52 2.24
2344 2768 4.939052 AACTTCTAGTGTGCACTGTAGT 57.061 40.909 19.41 11.28 42.52 2.73
2345 2769 7.145985 TCTAAAACTTCTAGTGTGCACTGTAG 58.854 38.462 19.41 17.32 42.52 2.74
2346 2770 7.046292 TCTAAAACTTCTAGTGTGCACTGTA 57.954 36.000 19.41 8.39 42.52 2.74
2347 2771 5.914033 TCTAAAACTTCTAGTGTGCACTGT 58.086 37.500 19.41 7.59 42.52 3.55
2348 2772 6.091441 GGATCTAAAACTTCTAGTGTGCACTG 59.909 42.308 19.41 5.93 42.52 3.66
2349 2773 6.166982 GGATCTAAAACTTCTAGTGTGCACT 58.833 40.000 19.41 9.90 45.02 4.40
2350 2774 5.932303 TGGATCTAAAACTTCTAGTGTGCAC 59.068 40.000 10.75 10.75 0.00 4.57
2351 2775 6.109156 TGGATCTAAAACTTCTAGTGTGCA 57.891 37.500 0.00 0.00 0.00 4.57
2352 2776 6.166982 ACTGGATCTAAAACTTCTAGTGTGC 58.833 40.000 0.00 0.00 31.04 4.57
2353 2777 8.524487 AGTACTGGATCTAAAACTTCTAGTGTG 58.476 37.037 0.00 0.00 33.82 3.82
2354 2778 8.653036 AGTACTGGATCTAAAACTTCTAGTGT 57.347 34.615 0.00 0.00 33.82 3.55
2380 2804 9.787435 TGGTCAAGTCTTTTGTAGTATGTTATT 57.213 29.630 0.00 0.00 0.00 1.40
2381 2805 9.216117 GTGGTCAAGTCTTTTGTAGTATGTTAT 57.784 33.333 0.00 0.00 0.00 1.89
2382 2806 8.205512 TGTGGTCAAGTCTTTTGTAGTATGTTA 58.794 33.333 0.00 0.00 0.00 2.41
2383 2807 7.051623 TGTGGTCAAGTCTTTTGTAGTATGTT 58.948 34.615 0.00 0.00 0.00 2.71
2384 2808 6.588204 TGTGGTCAAGTCTTTTGTAGTATGT 58.412 36.000 0.00 0.00 0.00 2.29
2385 2809 7.387673 TCATGTGGTCAAGTCTTTTGTAGTATG 59.612 37.037 0.00 0.00 0.00 2.39
2386 2810 7.450074 TCATGTGGTCAAGTCTTTTGTAGTAT 58.550 34.615 0.00 0.00 0.00 2.12
2387 2811 6.822442 TCATGTGGTCAAGTCTTTTGTAGTA 58.178 36.000 0.00 0.00 0.00 1.82
2388 2812 5.680619 TCATGTGGTCAAGTCTTTTGTAGT 58.319 37.500 0.00 0.00 0.00 2.73
2389 2813 6.652481 AGATCATGTGGTCAAGTCTTTTGTAG 59.348 38.462 0.00 0.00 0.00 2.74
2390 2814 6.427853 CAGATCATGTGGTCAAGTCTTTTGTA 59.572 38.462 0.00 0.00 0.00 2.41
2391 2815 5.240183 CAGATCATGTGGTCAAGTCTTTTGT 59.760 40.000 0.00 0.00 0.00 2.83
2392 2816 5.335426 CCAGATCATGTGGTCAAGTCTTTTG 60.335 44.000 0.00 0.00 0.00 2.44
2393 2817 4.763793 CCAGATCATGTGGTCAAGTCTTTT 59.236 41.667 0.00 0.00 0.00 2.27
2394 2818 4.042062 TCCAGATCATGTGGTCAAGTCTTT 59.958 41.667 0.00 0.00 36.37 2.52
2395 2819 3.584406 TCCAGATCATGTGGTCAAGTCTT 59.416 43.478 0.00 0.00 36.37 3.01
2396 2820 3.176411 TCCAGATCATGTGGTCAAGTCT 58.824 45.455 0.00 0.00 36.37 3.24
2397 2821 3.529533 CTCCAGATCATGTGGTCAAGTC 58.470 50.000 0.00 0.00 36.37 3.01
2398 2822 2.355513 GCTCCAGATCATGTGGTCAAGT 60.356 50.000 0.00 0.00 36.37 3.16
2399 2823 2.286872 GCTCCAGATCATGTGGTCAAG 58.713 52.381 0.00 0.00 36.37 3.02
2400 2824 1.629861 TGCTCCAGATCATGTGGTCAA 59.370 47.619 0.00 0.00 36.37 3.18
2401 2825 1.278537 TGCTCCAGATCATGTGGTCA 58.721 50.000 0.00 0.00 36.37 4.02
2402 2826 2.158856 TCATGCTCCAGATCATGTGGTC 60.159 50.000 0.00 0.00 40.54 4.02
2403 2827 1.841919 TCATGCTCCAGATCATGTGGT 59.158 47.619 0.00 0.00 40.54 4.16
2404 2828 2.632987 TCATGCTCCAGATCATGTGG 57.367 50.000 10.38 0.00 40.54 4.17
2405 2829 3.740115 TGATCATGCTCCAGATCATGTG 58.260 45.455 10.38 0.00 44.04 3.21
2409 2833 3.918294 TTGTGATCATGCTCCAGATCA 57.082 42.857 0.00 0.00 46.01 2.92
2410 2834 3.943381 TGTTTGTGATCATGCTCCAGATC 59.057 43.478 0.00 0.00 40.75 2.75
2411 2835 3.945921 CTGTTTGTGATCATGCTCCAGAT 59.054 43.478 0.00 0.00 0.00 2.90
2412 2836 3.008266 TCTGTTTGTGATCATGCTCCAGA 59.992 43.478 0.00 4.95 0.00 3.86
2413 2837 3.340928 TCTGTTTGTGATCATGCTCCAG 58.659 45.455 0.00 2.57 0.00 3.86
2414 2838 3.421919 TCTGTTTGTGATCATGCTCCA 57.578 42.857 0.00 0.00 0.00 3.86
2415 2839 3.503363 TGTTCTGTTTGTGATCATGCTCC 59.497 43.478 0.00 0.00 0.00 4.70
2416 2840 4.754372 TGTTCTGTTTGTGATCATGCTC 57.246 40.909 0.00 0.00 0.00 4.26
2417 2841 4.521639 ACATGTTCTGTTTGTGATCATGCT 59.478 37.500 0.00 0.00 41.57 3.79
2418 2842 4.801891 ACATGTTCTGTTTGTGATCATGC 58.198 39.130 0.00 0.00 41.57 4.06
2439 2863 4.855388 CAGCTGCAGAACATGTTAATGAAC 59.145 41.667 20.43 12.19 37.24 3.18
2440 2864 4.761227 TCAGCTGCAGAACATGTTAATGAA 59.239 37.500 20.43 13.43 37.24 2.57
2441 2865 4.325972 TCAGCTGCAGAACATGTTAATGA 58.674 39.130 20.43 11.50 37.24 2.57
2442 2866 4.690184 TCAGCTGCAGAACATGTTAATG 57.310 40.909 20.43 14.24 39.89 1.90
2443 2867 4.945543 TGATCAGCTGCAGAACATGTTAAT 59.054 37.500 20.43 0.00 0.00 1.40
2444 2868 4.325972 TGATCAGCTGCAGAACATGTTAA 58.674 39.130 20.43 0.00 0.00 2.01
2445 2869 3.941573 TGATCAGCTGCAGAACATGTTA 58.058 40.909 20.43 0.00 0.00 2.41
2446 2870 2.786777 TGATCAGCTGCAGAACATGTT 58.213 42.857 20.43 11.78 0.00 2.71
2447 2871 2.484742 TGATCAGCTGCAGAACATGT 57.515 45.000 20.43 0.00 0.00 3.21
2448 2872 4.554919 GCTTATGATCAGCTGCAGAACATG 60.555 45.833 20.43 10.02 34.15 3.21
2449 2873 3.564644 GCTTATGATCAGCTGCAGAACAT 59.435 43.478 20.43 18.70 34.15 2.71
2450 2874 2.941064 GCTTATGATCAGCTGCAGAACA 59.059 45.455 20.43 7.40 34.15 3.18
2451 2875 2.941064 TGCTTATGATCAGCTGCAGAAC 59.059 45.455 20.43 0.00 38.19 3.01
2452 2876 3.271055 TGCTTATGATCAGCTGCAGAA 57.729 42.857 20.43 5.03 38.19 3.02
2453 2877 2.994186 TGCTTATGATCAGCTGCAGA 57.006 45.000 20.43 0.00 38.19 4.26
2454 2878 4.103357 GTTTTGCTTATGATCAGCTGCAG 58.897 43.478 10.11 10.11 38.19 4.41
2455 2879 3.506844 TGTTTTGCTTATGATCAGCTGCA 59.493 39.130 9.47 13.07 38.19 4.41
2456 2880 3.855950 GTGTTTTGCTTATGATCAGCTGC 59.144 43.478 9.47 5.64 38.19 5.25
2457 2881 5.050644 TGTGTTTTGCTTATGATCAGCTG 57.949 39.130 7.63 7.63 38.19 4.24
2458 2882 5.710513 TTGTGTTTTGCTTATGATCAGCT 57.289 34.783 0.09 0.00 38.19 4.24
2459 2883 6.768029 TTTTGTGTTTTGCTTATGATCAGC 57.232 33.333 0.09 0.00 37.82 4.26
2487 2911 9.554053 AGGTCTAGCTGGAGTAAAATATATCAT 57.446 33.333 0.00 0.00 0.00 2.45
2488 2912 8.807118 CAGGTCTAGCTGGAGTAAAATATATCA 58.193 37.037 0.00 0.00 0.00 2.15
2489 2913 7.762159 GCAGGTCTAGCTGGAGTAAAATATATC 59.238 40.741 0.00 0.00 0.00 1.63
2490 2914 7.235606 TGCAGGTCTAGCTGGAGTAAAATATAT 59.764 37.037 0.00 0.00 0.00 0.86
2491 2915 6.553476 TGCAGGTCTAGCTGGAGTAAAATATA 59.447 38.462 0.00 0.00 0.00 0.86
2492 2916 5.366768 TGCAGGTCTAGCTGGAGTAAAATAT 59.633 40.000 0.00 0.00 0.00 1.28
2493 2917 4.714802 TGCAGGTCTAGCTGGAGTAAAATA 59.285 41.667 0.00 0.00 0.00 1.40
2494 2918 3.519510 TGCAGGTCTAGCTGGAGTAAAAT 59.480 43.478 0.00 0.00 0.00 1.82
2495 2919 2.903784 TGCAGGTCTAGCTGGAGTAAAA 59.096 45.455 0.00 0.00 0.00 1.52
2496 2920 2.536066 TGCAGGTCTAGCTGGAGTAAA 58.464 47.619 0.00 0.00 0.00 2.01
2497 2921 2.231716 TGCAGGTCTAGCTGGAGTAA 57.768 50.000 0.00 0.00 0.00 2.24
2498 2922 2.034878 CATGCAGGTCTAGCTGGAGTA 58.965 52.381 0.00 0.00 0.00 2.59
2499 2923 0.829333 CATGCAGGTCTAGCTGGAGT 59.171 55.000 0.00 0.00 0.00 3.85
2500 2924 0.829333 ACATGCAGGTCTAGCTGGAG 59.171 55.000 0.00 5.30 0.00 3.86
2501 2925 0.826715 GACATGCAGGTCTAGCTGGA 59.173 55.000 23.53 8.48 34.92 3.86
2502 2926 0.829333 AGACATGCAGGTCTAGCTGG 59.171 55.000 31.08 0.00 45.95 4.85
2509 2933 3.064900 AGGAAAAGAGACATGCAGGTC 57.935 47.619 23.39 23.39 38.08 3.85
2510 2934 4.472833 AGATAGGAAAAGAGACATGCAGGT 59.527 41.667 2.33 2.33 0.00 4.00
2511 2935 5.033589 AGATAGGAAAAGAGACATGCAGG 57.966 43.478 0.00 0.00 0.00 4.85
2512 2936 4.744137 CGAGATAGGAAAAGAGACATGCAG 59.256 45.833 0.00 0.00 0.00 4.41
2513 2937 4.442052 CCGAGATAGGAAAAGAGACATGCA 60.442 45.833 0.00 0.00 0.00 3.96
2514 2938 4.054671 CCGAGATAGGAAAAGAGACATGC 58.945 47.826 0.00 0.00 0.00 4.06
2515 2939 5.269505 ACCGAGATAGGAAAAGAGACATG 57.730 43.478 0.00 0.00 34.73 3.21
2516 2940 5.908341 GAACCGAGATAGGAAAAGAGACAT 58.092 41.667 0.00 0.00 34.73 3.06
2517 2941 5.326200 GAACCGAGATAGGAAAAGAGACA 57.674 43.478 0.00 0.00 34.73 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.