Multiple sequence alignment - TraesCS2D01G217600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G217600 chr2D 100.000 7559 0 0 1 7559 181255926 181263484 0.000000e+00 13959.0
1 TraesCS2D01G217600 chr2D 89.944 1074 97 8 3334 4405 375576946 375575882 0.000000e+00 1375.0
2 TraesCS2D01G217600 chr2D 82.027 740 83 32 277 981 181206419 181207143 1.090000e-162 584.0
3 TraesCS2D01G217600 chr2D 95.987 299 11 1 2610 2907 375577482 375577184 1.140000e-132 484.0
4 TraesCS2D01G217600 chr2D 85.207 338 38 7 4073 4406 375577154 375577483 3.380000e-88 337.0
5 TraesCS2D01G217600 chr2D 85.016 307 34 8 2609 2907 375575881 375576183 1.230000e-77 302.0
6 TraesCS2D01G217600 chr2D 93.605 172 11 0 2906 3077 560959485 560959656 2.710000e-64 257.0
7 TraesCS2D01G217600 chr2D 83.333 126 8 8 6706 6821 553263560 553263682 3.730000e-18 104.0
8 TraesCS2D01G217600 chr2D 92.500 40 1 1 3326 3363 181259219 181259258 1.000000e-03 56.5
9 TraesCS2D01G217600 chr2D 92.500 40 1 1 3294 3333 181259251 181259288 1.000000e-03 56.5
10 TraesCS2D01G217600 chrUn 93.532 1948 88 10 691 2606 297835328 297833387 0.000000e+00 2865.0
11 TraesCS2D01G217600 chrUn 93.532 1948 88 10 691 2606 306509734 306511675 0.000000e+00 2865.0
12 TraesCS2D01G217600 chrUn 93.532 1948 88 10 691 2606 311570080 311572021 0.000000e+00 2865.0
13 TraesCS2D01G217600 chrUn 91.667 1764 95 27 4855 6581 322854167 322852419 0.000000e+00 2396.0
14 TraesCS2D01G217600 chrUn 91.667 1764 95 27 4855 6581 341784406 341786154 0.000000e+00 2396.0
15 TraesCS2D01G217600 chrUn 87.528 449 34 8 4427 4860 322854766 322854325 4.070000e-137 499.0
16 TraesCS2D01G217600 chrUn 87.755 441 34 7 4433 4860 476176367 476175934 1.460000e-136 497.0
17 TraesCS2D01G217600 chr2B 93.532 1948 88 10 691 2606 237740003 237741944 0.000000e+00 2865.0
18 TraesCS2D01G217600 chr2B 84.740 308 38 6 2610 2908 757233095 757233402 4.430000e-77 300.0
19 TraesCS2D01G217600 chr2A 94.722 1402 53 10 1004 2387 196498846 196500244 0.000000e+00 2159.0
20 TraesCS2D01G217600 chr2A 93.935 1253 52 9 5331 6578 196504146 196505379 0.000000e+00 1871.0
21 TraesCS2D01G217600 chr2A 93.597 859 47 3 6706 7559 767810949 767811804 0.000000e+00 1275.0
22 TraesCS2D01G217600 chr2A 90.356 954 42 16 4406 5312 196500529 196501479 0.000000e+00 1206.0
23 TraesCS2D01G217600 chr2A 81.988 805 78 33 206 948 196498034 196498833 8.330000e-174 621.0
24 TraesCS2D01G217600 chr2A 93.085 188 11 2 2422 2609 196500352 196500537 2.690000e-69 274.0
25 TraesCS2D01G217600 chr2A 89.412 170 17 1 7305 7473 557274013 557274182 5.940000e-51 213.0
26 TraesCS2D01G217600 chr2A 88.166 169 19 1 7306 7473 314852408 314852240 4.630000e-47 200.0
27 TraesCS2D01G217600 chr1B 90.047 1075 102 5 3334 4406 499654751 499653680 0.000000e+00 1387.0
28 TraesCS2D01G217600 chr1B 92.199 282 20 2 2610 2890 499655254 499654974 1.530000e-106 398.0
29 TraesCS2D01G217600 chr1B 85.948 306 32 7 2610 2907 499653681 499653983 4.400000e-82 316.0
30 TraesCS2D01G217600 chr1D 97.139 769 20 2 3598 4365 246100927 246101694 0.000000e+00 1297.0
31 TraesCS2D01G217600 chr1D 95.266 169 8 0 2906 3074 206955537 206955705 1.250000e-67 268.0
32 TraesCS2D01G217600 chr1D 95.062 162 8 0 2899 3060 238940209 238940370 9.730000e-64 255.0
33 TraesCS2D01G217600 chr1D 87.791 172 19 2 7304 7473 52608052 52607881 4.630000e-47 200.0
34 TraesCS2D01G217600 chr1D 86.550 171 22 1 7304 7473 440782280 440782450 3.600000e-43 187.0
35 TraesCS2D01G217600 chr1D 85.965 171 23 1 7304 7473 440783563 440783733 1.680000e-41 182.0
36 TraesCS2D01G217600 chr1D 85.965 171 23 1 7304 7473 440784852 440785022 1.680000e-41 182.0
37 TraesCS2D01G217600 chr1D 85.217 115 10 7 6706 6817 333336561 333336451 2.230000e-20 111.0
38 TraesCS2D01G217600 chr1D 81.890 127 23 0 5754 5880 368279261 368279135 2.880000e-19 108.0
39 TraesCS2D01G217600 chr1D 80.952 126 24 0 5737 5862 367916374 367916249 4.830000e-17 100.0
40 TraesCS2D01G217600 chr6A 93.116 857 51 3 6707 7559 2394925 2394073 0.000000e+00 1249.0
41 TraesCS2D01G217600 chr6A 86.730 633 69 3 3326 3956 467597770 467598389 0.000000e+00 689.0
42 TraesCS2D01G217600 chr6A 93.709 302 14 3 2609 2907 467598974 467598675 1.500000e-121 448.0
43 TraesCS2D01G217600 chr6A 93.919 296 16 2 2614 2907 467597248 467597543 5.380000e-121 446.0
44 TraesCS2D01G217600 chr6A 84.943 352 37 10 4056 4401 467597589 467597248 7.260000e-90 342.0
45 TraesCS2D01G217600 chr6A 84.270 356 39 9 4056 4405 467598629 467598973 1.570000e-86 331.0
46 TraesCS2D01G217600 chr6A 90.196 51 4 1 6054 6104 15319305 15319256 1.760000e-06 65.8
47 TraesCS2D01G217600 chr7A 88.727 1029 103 8 3334 4360 230484687 230483670 0.000000e+00 1245.0
48 TraesCS2D01G217600 chr7A 94.333 300 16 1 2609 2907 230485223 230484924 6.910000e-125 459.0
49 TraesCS2D01G217600 chr7A 91.797 256 18 3 3084 3336 230484910 230484655 3.360000e-93 353.0
50 TraesCS2D01G217600 chr7A 84.024 338 39 12 4073 4405 230484895 230485222 2.050000e-80 311.0
51 TraesCS2D01G217600 chr7A 92.737 179 13 0 2903 3081 6316664 6316842 7.520000e-65 259.0
52 TraesCS2D01G217600 chr7A 88.060 67 6 2 6974 7040 86250653 86250717 2.260000e-10 78.7
53 TraesCS2D01G217600 chr5A 87.969 773 83 7 3334 4104 598635792 598635028 0.000000e+00 904.0
54 TraesCS2D01G217600 chr5A 88.015 267 29 3 3069 3333 598636028 598635763 5.690000e-81 313.0
55 TraesCS2D01G217600 chr5A 93.143 175 11 1 2900 3073 290391868 290391694 9.730000e-64 255.0
56 TraesCS2D01G217600 chr5A 75.895 531 101 17 3569 4093 22567901 22568410 5.860000e-61 246.0
57 TraesCS2D01G217600 chr5A 84.444 180 26 2 7050 7228 479599630 479599452 7.800000e-40 176.0
58 TraesCS2D01G217600 chr5A 85.714 98 14 0 3569 3666 22567667 22567764 3.730000e-18 104.0
59 TraesCS2D01G217600 chr5A 85.149 101 15 0 6006 6106 553462220 553462120 3.730000e-18 104.0
60 TraesCS2D01G217600 chr4B 85.658 760 98 5 3348 4106 12139896 12140645 0.000000e+00 789.0
61 TraesCS2D01G217600 chr4B 91.797 256 19 2 2653 2907 12139434 12139688 9.330000e-94 355.0
62 TraesCS2D01G217600 chr4B 88.318 214 17 8 2901 3110 549133885 549133676 4.530000e-62 250.0
63 TraesCS2D01G217600 chr4B 86.154 65 6 3 123 185 498369922 498369859 4.900000e-07 67.6
64 TraesCS2D01G217600 chr1A 96.889 450 14 0 7110 7559 544720288 544720737 0.000000e+00 754.0
65 TraesCS2D01G217600 chr1A 93.455 275 10 3 6767 7037 544720021 544720291 1.180000e-107 401.0
66 TraesCS2D01G217600 chr1A 88.235 306 28 5 3801 4104 452278360 452278659 7.210000e-95 359.0
67 TraesCS2D01G217600 chr1A 89.139 267 26 3 3069 3333 452263825 452264090 5.650000e-86 329.0
68 TraesCS2D01G217600 chr1A 79.487 195 36 4 92 283 546317091 546317284 1.320000e-27 135.0
69 TraesCS2D01G217600 chr1A 81.651 109 20 0 5754 5862 467192288 467192180 2.900000e-14 91.6
70 TraesCS2D01G217600 chr1A 92.308 52 2 1 3326 3375 452264051 452264102 1.050000e-08 73.1
71 TraesCS2D01G217600 chr4D 85.654 711 54 18 3702 4405 6773424 6774093 0.000000e+00 704.0
72 TraesCS2D01G217600 chr4D 89.268 410 40 4 3997 4404 215438022 215438429 1.880000e-140 510.0
73 TraesCS2D01G217600 chr4D 87.692 65 5 3 123 185 402521480 402521417 1.050000e-08 73.1
74 TraesCS2D01G217600 chr5D 95.181 166 8 0 2905 3070 321901913 321902078 5.820000e-66 263.0
75 TraesCS2D01G217600 chr5D 93.182 176 10 2 2898 3071 69953536 69953711 2.710000e-64 257.0
76 TraesCS2D01G217600 chr5D 93.750 80 5 0 6709 6788 119674091 119674170 3.700000e-23 121.0
77 TraesCS2D01G217600 chr7B 89.286 196 19 2 2897 3090 573132131 573132326 2.110000e-60 244.0
78 TraesCS2D01G217600 chr3D 94.048 84 3 2 6706 6788 144280893 144280975 7.960000e-25 126.0
79 TraesCS2D01G217600 chr3B 94.048 84 4 1 6705 6788 61546663 61546581 7.960000e-25 126.0
80 TraesCS2D01G217600 chr7D 86.111 108 9 6 6706 6810 410099103 410098999 2.230000e-20 111.0
81 TraesCS2D01G217600 chr4A 78.882 161 22 11 6706 6859 277986416 277986571 1.740000e-16 99.0
82 TraesCS2D01G217600 chr6B 86.316 95 6 5 6949 7043 618933574 618933487 6.240000e-16 97.1
83 TraesCS2D01G217600 chr6B 83.505 97 16 0 6009 6105 23443237 23443333 2.900000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G217600 chr2D 181255926 181263484 7558 False 13959.000000 13959 100.000000 1 7559 1 chr2D.!!$F2 7558
1 TraesCS2D01G217600 chr2D 375575882 375577482 1600 True 929.500000 1375 92.965500 2610 4405 2 chr2D.!!$R1 1795
2 TraesCS2D01G217600 chr2D 181206419 181207143 724 False 584.000000 584 82.027000 277 981 1 chr2D.!!$F1 704
3 TraesCS2D01G217600 chr2D 375575881 375577483 1602 False 319.500000 337 85.111500 2609 4406 2 chr2D.!!$F6 1797
4 TraesCS2D01G217600 chrUn 297833387 297835328 1941 True 2865.000000 2865 93.532000 691 2606 1 chrUn.!!$R1 1915
5 TraesCS2D01G217600 chrUn 306509734 306511675 1941 False 2865.000000 2865 93.532000 691 2606 1 chrUn.!!$F1 1915
6 TraesCS2D01G217600 chrUn 311570080 311572021 1941 False 2865.000000 2865 93.532000 691 2606 1 chrUn.!!$F2 1915
7 TraesCS2D01G217600 chrUn 341784406 341786154 1748 False 2396.000000 2396 91.667000 4855 6581 1 chrUn.!!$F3 1726
8 TraesCS2D01G217600 chrUn 322852419 322854766 2347 True 1447.500000 2396 89.597500 4427 6581 2 chrUn.!!$R3 2154
9 TraesCS2D01G217600 chr2B 237740003 237741944 1941 False 2865.000000 2865 93.532000 691 2606 1 chr2B.!!$F1 1915
10 TraesCS2D01G217600 chr2A 767810949 767811804 855 False 1275.000000 1275 93.597000 6706 7559 1 chr2A.!!$F2 853
11 TraesCS2D01G217600 chr2A 196498034 196505379 7345 False 1226.200000 2159 90.817200 206 6578 5 chr2A.!!$F3 6372
12 TraesCS2D01G217600 chr1B 499653680 499655254 1574 True 892.500000 1387 91.123000 2610 4406 2 chr1B.!!$R1 1796
13 TraesCS2D01G217600 chr1D 246100927 246101694 767 False 1297.000000 1297 97.139000 3598 4365 1 chr1D.!!$F3 767
14 TraesCS2D01G217600 chr6A 2394073 2394925 852 True 1249.000000 1249 93.116000 6707 7559 1 chr6A.!!$R1 852
15 TraesCS2D01G217600 chr6A 467597248 467598973 1725 False 488.666667 689 88.306333 2614 4405 3 chr6A.!!$F1 1791
16 TraesCS2D01G217600 chr6A 467597248 467598974 1726 True 395.000000 448 89.326000 2609 4401 2 chr6A.!!$R3 1792
17 TraesCS2D01G217600 chr7A 230483670 230485223 1553 True 685.666667 1245 91.619000 2609 4360 3 chr7A.!!$R1 1751
18 TraesCS2D01G217600 chr5A 598635028 598636028 1000 True 608.500000 904 87.992000 3069 4104 2 chr5A.!!$R4 1035
19 TraesCS2D01G217600 chr4B 12139434 12140645 1211 False 572.000000 789 88.727500 2653 4106 2 chr4B.!!$F1 1453
20 TraesCS2D01G217600 chr1A 544720021 544720737 716 False 577.500000 754 95.172000 6767 7559 2 chr1A.!!$F4 792
21 TraesCS2D01G217600 chr4D 6773424 6774093 669 False 704.000000 704 85.654000 3702 4405 1 chr4D.!!$F1 703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 450 0.168348 GCGAACTGAGCGTCACTCTA 59.832 55.000 0.00 0.0 46.41 2.43 F
1018 1090 0.330604 AATGAGTGCCATCTGGTGCT 59.669 50.000 0.00 0.0 37.57 4.40 F
1557 1638 0.107993 TCGACCGATACCTGACGACT 60.108 55.000 0.00 0.0 0.00 4.18 F
3177 3578 1.068417 CGGACGGTGACCTTGTTCA 59.932 57.895 0.00 0.0 0.00 3.18 F
4304 5307 0.386476 CAAGTGCTGGCTTGCTTTCA 59.614 50.000 4.89 0.0 39.26 2.69 F
6216 10125 0.326927 ACAAGGGGATGGTGGTAACG 59.673 55.000 0.00 0.0 42.51 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1429 1510 0.250295 CCGTTGGAGTCCTGAAGCAA 60.250 55.0 11.33 0.00 0.00 3.91 R
2399 2492 0.510359 GAATGTGCGCTGATCCGATC 59.490 55.0 9.73 1.01 0.00 3.69 R
3386 3789 0.108585 ATGAGTGCCAGACCACGTTT 59.891 50.0 0.00 0.00 40.59 3.60 R
4406 5410 0.846015 ATAGCAGCCATGGGTTAGCA 59.154 50.0 23.56 12.71 0.00 3.49 R
6221 10130 0.033366 ATGCACAGCACACTCACGTA 59.967 50.0 0.00 0.00 43.04 3.57 R
7043 10964 0.738975 CTCCACTACGGCTCGAATCA 59.261 55.0 1.50 0.00 33.14 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.373005 TTTCACCAGAGGTCTATTTGATCA 57.627 37.500 0.00 0.00 31.02 2.92
25 26 6.373005 TTCACCAGAGGTCTATTTGATCAA 57.627 37.500 3.38 3.38 31.02 2.57
26 27 5.982356 TCACCAGAGGTCTATTTGATCAAG 58.018 41.667 8.41 0.00 31.02 3.02
27 28 5.721480 TCACCAGAGGTCTATTTGATCAAGA 59.279 40.000 8.41 0.00 31.02 3.02
28 29 6.385176 TCACCAGAGGTCTATTTGATCAAGAT 59.615 38.462 8.41 8.05 31.02 2.40
29 30 7.565029 TCACCAGAGGTCTATTTGATCAAGATA 59.435 37.037 8.41 8.70 31.02 1.98
30 31 8.373981 CACCAGAGGTCTATTTGATCAAGATAT 58.626 37.037 8.41 2.34 31.02 1.63
31 32 8.592809 ACCAGAGGTCTATTTGATCAAGATATC 58.407 37.037 8.41 5.47 0.00 1.63
32 33 8.814931 CCAGAGGTCTATTTGATCAAGATATCT 58.185 37.037 8.41 0.00 0.00 1.98
45 46 9.799106 TGATCAAGATATCTTTTAGGATTTCCC 57.201 33.333 15.49 4.65 32.90 3.97
46 47 9.237187 GATCAAGATATCTTTTAGGATTTCCCC 57.763 37.037 15.49 0.62 32.90 4.81
47 48 7.526918 TCAAGATATCTTTTAGGATTTCCCCC 58.473 38.462 15.49 0.00 32.90 5.40
48 49 7.353595 TCAAGATATCTTTTAGGATTTCCCCCT 59.646 37.037 15.49 0.00 34.37 4.79
49 50 7.729413 AGATATCTTTTAGGATTTCCCCCTT 57.271 36.000 0.00 0.00 35.30 3.95
50 51 8.830084 AGATATCTTTTAGGATTTCCCCCTTA 57.170 34.615 0.00 0.00 35.30 2.69
51 52 8.670490 AGATATCTTTTAGGATTTCCCCCTTAC 58.330 37.037 0.00 0.00 35.30 2.34
52 53 6.927691 ATCTTTTAGGATTTCCCCCTTACT 57.072 37.500 0.00 0.00 35.30 2.24
53 54 9.699106 ATATCTTTTAGGATTTCCCCCTTACTA 57.301 33.333 0.00 0.00 35.30 1.82
54 55 8.597313 ATCTTTTAGGATTTCCCCCTTACTAT 57.403 34.615 0.00 0.00 35.30 2.12
55 56 9.699106 ATCTTTTAGGATTTCCCCCTTACTATA 57.301 33.333 0.00 0.00 35.30 1.31
56 57 9.699106 TCTTTTAGGATTTCCCCCTTACTATAT 57.301 33.333 0.00 0.00 35.30 0.86
60 61 9.570448 TTAGGATTTCCCCCTTACTATATTAGG 57.430 37.037 0.00 0.00 35.30 2.69
61 62 7.797298 AGGATTTCCCCCTTACTATATTAGGA 58.203 38.462 0.00 0.00 36.42 2.94
62 63 7.907280 AGGATTTCCCCCTTACTATATTAGGAG 59.093 40.741 0.00 0.00 36.42 3.69
63 64 7.683322 GGATTTCCCCCTTACTATATTAGGAGT 59.317 40.741 0.00 0.00 0.00 3.85
64 65 9.779951 GATTTCCCCCTTACTATATTAGGAGTA 57.220 37.037 0.00 0.00 0.00 2.59
65 66 9.785854 ATTTCCCCCTTACTATATTAGGAGTAG 57.214 37.037 0.00 0.00 30.10 2.57
66 67 8.544123 TTCCCCCTTACTATATTAGGAGTAGA 57.456 38.462 0.00 0.00 30.10 2.59
67 68 8.172555 TCCCCCTTACTATATTAGGAGTAGAG 57.827 42.308 0.00 0.00 30.10 2.43
68 69 7.971802 TCCCCCTTACTATATTAGGAGTAGAGA 59.028 40.741 0.00 0.00 30.10 3.10
69 70 8.621971 CCCCCTTACTATATTAGGAGTAGAGAA 58.378 40.741 0.00 0.00 30.10 2.87
93 94 6.927294 AAAATTATTAACTCTCCGCTCAGG 57.073 37.500 0.00 0.00 42.97 3.86
94 95 4.608948 ATTATTAACTCTCCGCTCAGGG 57.391 45.455 0.00 0.00 41.52 4.45
95 96 0.466124 ATTAACTCTCCGCTCAGGGC 59.534 55.000 0.00 0.00 41.52 5.19
96 97 1.614241 TTAACTCTCCGCTCAGGGCC 61.614 60.000 0.00 0.00 41.52 5.80
97 98 2.516048 TAACTCTCCGCTCAGGGCCT 62.516 60.000 0.00 0.00 41.52 5.19
98 99 3.080121 CTCTCCGCTCAGGGCCTT 61.080 66.667 1.32 0.00 41.52 4.35
99 100 2.607750 TCTCCGCTCAGGGCCTTT 60.608 61.111 1.32 0.00 41.52 3.11
100 101 2.190488 CTCTCCGCTCAGGGCCTTTT 62.190 60.000 1.32 0.00 41.52 2.27
101 102 1.303643 CTCCGCTCAGGGCCTTTTT 60.304 57.895 1.32 0.00 41.52 1.94
102 103 1.589716 CTCCGCTCAGGGCCTTTTTG 61.590 60.000 1.32 0.00 41.52 2.44
103 104 1.603455 CCGCTCAGGGCCTTTTTGA 60.603 57.895 1.32 0.00 37.74 2.69
104 105 0.967380 CCGCTCAGGGCCTTTTTGAT 60.967 55.000 1.32 0.00 37.74 2.57
105 106 0.890683 CGCTCAGGGCCTTTTTGATT 59.109 50.000 1.32 0.00 37.74 2.57
106 107 1.135286 CGCTCAGGGCCTTTTTGATTC 60.135 52.381 1.32 0.00 37.74 2.52
107 108 1.895131 GCTCAGGGCCTTTTTGATTCA 59.105 47.619 1.32 0.00 34.27 2.57
108 109 2.299867 GCTCAGGGCCTTTTTGATTCAA 59.700 45.455 1.32 0.00 34.27 2.69
109 110 3.244181 GCTCAGGGCCTTTTTGATTCAAA 60.244 43.478 1.32 7.74 34.27 2.69
110 111 4.563061 CTCAGGGCCTTTTTGATTCAAAG 58.437 43.478 1.32 2.04 34.72 2.77
122 123 7.462109 TTTTGATTCAAAGGATTTTCACACG 57.538 32.000 11.41 0.00 35.03 4.49
123 124 6.384258 TTGATTCAAAGGATTTTCACACGA 57.616 33.333 0.00 0.00 35.03 4.35
124 125 6.384258 TGATTCAAAGGATTTTCACACGAA 57.616 33.333 0.00 0.00 35.03 3.85
125 126 6.980593 TGATTCAAAGGATTTTCACACGAAT 58.019 32.000 0.00 0.00 35.03 3.34
126 127 7.432869 TGATTCAAAGGATTTTCACACGAATT 58.567 30.769 0.00 0.00 35.03 2.17
127 128 7.925483 TGATTCAAAGGATTTTCACACGAATTT 59.075 29.630 0.00 0.00 35.03 1.82
128 129 8.661352 ATTCAAAGGATTTTCACACGAATTTT 57.339 26.923 0.00 0.00 35.03 1.82
129 130 7.462109 TCAAAGGATTTTCACACGAATTTTG 57.538 32.000 0.00 0.00 35.03 2.44
130 131 7.261325 TCAAAGGATTTTCACACGAATTTTGA 58.739 30.769 0.00 0.00 35.03 2.69
131 132 7.925483 TCAAAGGATTTTCACACGAATTTTGAT 59.075 29.630 0.00 0.00 35.03 2.57
132 133 7.642071 AAGGATTTTCACACGAATTTTGATG 57.358 32.000 0.00 0.00 0.00 3.07
133 134 6.158598 AGGATTTTCACACGAATTTTGATGG 58.841 36.000 0.00 0.00 0.00 3.51
134 135 6.015519 AGGATTTTCACACGAATTTTGATGGA 60.016 34.615 0.00 0.00 0.00 3.41
135 136 6.813152 GGATTTTCACACGAATTTTGATGGAT 59.187 34.615 0.00 0.00 0.00 3.41
136 137 7.331687 GGATTTTCACACGAATTTTGATGGATT 59.668 33.333 0.00 0.00 0.00 3.01
137 138 7.405469 TTTTCACACGAATTTTGATGGATTG 57.595 32.000 0.00 0.00 0.00 2.67
138 139 5.058149 TCACACGAATTTTGATGGATTGG 57.942 39.130 0.00 0.00 0.00 3.16
139 140 4.764308 TCACACGAATTTTGATGGATTGGA 59.236 37.500 0.00 0.00 0.00 3.53
140 141 5.242615 TCACACGAATTTTGATGGATTGGAA 59.757 36.000 0.00 0.00 0.00 3.53
141 142 6.071447 TCACACGAATTTTGATGGATTGGAAT 60.071 34.615 0.00 0.00 0.00 3.01
142 143 6.254157 CACACGAATTTTGATGGATTGGAATC 59.746 38.462 0.00 0.00 34.66 2.52
180 181 8.786826 TTCTATGTTGGTAGTTTGATTGTAGG 57.213 34.615 0.00 0.00 0.00 3.18
181 182 8.141298 TCTATGTTGGTAGTTTGATTGTAGGA 57.859 34.615 0.00 0.00 0.00 2.94
182 183 8.768397 TCTATGTTGGTAGTTTGATTGTAGGAT 58.232 33.333 0.00 0.00 0.00 3.24
183 184 9.396022 CTATGTTGGTAGTTTGATTGTAGGATT 57.604 33.333 0.00 0.00 0.00 3.01
184 185 7.447374 TGTTGGTAGTTTGATTGTAGGATTG 57.553 36.000 0.00 0.00 0.00 2.67
185 186 7.227873 TGTTGGTAGTTTGATTGTAGGATTGA 58.772 34.615 0.00 0.00 0.00 2.57
186 187 7.721842 TGTTGGTAGTTTGATTGTAGGATTGAA 59.278 33.333 0.00 0.00 0.00 2.69
187 188 8.739972 GTTGGTAGTTTGATTGTAGGATTGAAT 58.260 33.333 0.00 0.00 0.00 2.57
188 189 8.506168 TGGTAGTTTGATTGTAGGATTGAATC 57.494 34.615 0.00 0.00 0.00 2.52
189 190 8.328758 TGGTAGTTTGATTGTAGGATTGAATCT 58.671 33.333 5.03 0.00 0.00 2.40
190 191 9.178758 GGTAGTTTGATTGTAGGATTGAATCTT 57.821 33.333 5.03 0.00 0.00 2.40
265 266 8.750515 AGAATTCACCCAAACATTTTGAAAAT 57.249 26.923 8.44 0.00 30.34 1.82
302 303 3.057596 CCTACGAAAGCCATCAAGCAAAA 60.058 43.478 0.00 0.00 34.23 2.44
303 304 3.665745 ACGAAAGCCATCAAGCAAAAT 57.334 38.095 0.00 0.00 34.23 1.82
311 312 5.473039 AGCCATCAAGCAAAATAAAGTCAC 58.527 37.500 0.00 0.00 34.23 3.67
334 335 6.373216 CACGTAGGATTCAAAAGGGAACATTA 59.627 38.462 0.00 0.00 0.00 1.90
372 377 7.548075 CCTATTCTTGTGTGTTTAGAACCGTAT 59.452 37.037 0.00 0.00 31.31 3.06
377 382 6.474819 TGTGTGTTTAGAACCGTATGAATG 57.525 37.500 0.00 0.00 0.00 2.67
392 398 6.183360 CCGTATGAATGAAAGAGGCTTCAAAT 60.183 38.462 0.00 0.00 38.75 2.32
394 400 7.756722 CGTATGAATGAAAGAGGCTTCAAATTT 59.243 33.333 0.00 0.00 38.75 1.82
420 444 1.618640 GGTCAAGCGAACTGAGCGTC 61.619 60.000 0.00 0.00 40.04 5.19
424 448 0.664767 AAGCGAACTGAGCGTCACTC 60.665 55.000 0.00 0.00 46.45 3.51
426 450 0.168348 GCGAACTGAGCGTCACTCTA 59.832 55.000 0.00 0.00 46.41 2.43
429 453 3.487042 GCGAACTGAGCGTCACTCTAATA 60.487 47.826 0.00 0.00 46.41 0.98
438 462 7.640852 TGAGCGTCACTCTAATAGTTAGATTC 58.359 38.462 0.33 0.00 46.41 2.52
441 467 7.040961 AGCGTCACTCTAATAGTTAGATTCCTC 60.041 40.741 0.33 0.00 41.17 3.71
467 493 3.055385 GTGTAACCAGCCCATCAGAGTTA 60.055 47.826 0.00 0.00 0.00 2.24
476 502 4.783227 AGCCCATCAGAGTTAAAGTCCTAA 59.217 41.667 0.00 0.00 0.00 2.69
478 504 6.069381 AGCCCATCAGAGTTAAAGTCCTAAAT 60.069 38.462 0.00 0.00 0.00 1.40
481 507 9.681062 CCCATCAGAGTTAAAGTCCTAAATTTA 57.319 33.333 0.00 0.00 0.00 1.40
511 538 8.223100 GTGCTCGCATTTTTCTGAATTAATTTT 58.777 29.630 1.43 0.00 0.00 1.82
537 564 5.212194 ACTTTTCATTGATGTTCGTTTCGG 58.788 37.500 0.00 0.00 0.00 4.30
559 586 3.555139 GCTACGAGACGTATGTAGTGACT 59.445 47.826 17.49 0.00 41.53 3.41
564 591 5.152097 CGAGACGTATGTAGTGACTTTGTT 58.848 41.667 0.00 0.00 0.00 2.83
570 597 7.380536 ACGTATGTAGTGACTTTGTTAATCCA 58.619 34.615 0.00 0.00 0.00 3.41
592 619 5.221145 CCAGCTGAGTATCTCGAATGTACTT 60.221 44.000 17.39 0.00 34.92 2.24
596 623 8.723311 AGCTGAGTATCTCGAATGTACTTATAC 58.277 37.037 0.00 0.00 34.92 1.47
613 641 7.253905 ACTTATACAGGAATAAGGTGTGTGT 57.746 36.000 8.13 0.00 41.70 3.72
614 642 7.103641 ACTTATACAGGAATAAGGTGTGTGTG 58.896 38.462 8.13 0.00 41.70 3.82
615 643 3.857157 ACAGGAATAAGGTGTGTGTGT 57.143 42.857 0.00 0.00 0.00 3.72
618 646 2.367567 AGGAATAAGGTGTGTGTGTCGT 59.632 45.455 0.00 0.00 0.00 4.34
622 650 2.845752 AAGGTGTGTGTGTCGTGCGT 62.846 55.000 0.00 0.00 0.00 5.24
628 656 1.124297 GTGTGTGTCGTGCGTTCATAG 59.876 52.381 0.00 0.00 0.00 2.23
646 674 6.968131 TCATAGAAGTGAGTTTATGTGTGC 57.032 37.500 0.00 0.00 0.00 4.57
661 716 1.136252 GTGTGCGTGTATGTGAGCAAG 60.136 52.381 0.00 0.00 41.56 4.01
677 732 2.034558 AGCAAGTGTGGTTGTATTGTGC 59.965 45.455 0.00 0.00 28.67 4.57
989 1061 1.471119 TGATAGTCAGTCGGGGTGTC 58.529 55.000 0.00 0.00 0.00 3.67
1007 1079 1.993370 GTCGTGGTGACTAATGAGTGC 59.007 52.381 0.00 0.00 44.58 4.40
1008 1080 1.067142 TCGTGGTGACTAATGAGTGCC 60.067 52.381 0.00 0.00 35.45 5.01
1009 1081 1.337728 CGTGGTGACTAATGAGTGCCA 60.338 52.381 0.00 0.00 35.45 4.92
1018 1090 0.330604 AATGAGTGCCATCTGGTGCT 59.669 50.000 0.00 0.00 37.57 4.40
1019 1091 0.393944 ATGAGTGCCATCTGGTGCTG 60.394 55.000 0.00 0.00 37.57 4.41
1026 1098 1.389609 CCATCTGGTGCTGGGCAATC 61.390 60.000 0.00 0.00 41.47 2.67
1083 1161 1.199615 CTCTTCTCCCCCTGTTCCTC 58.800 60.000 0.00 0.00 0.00 3.71
1159 1237 2.095252 GGCCAGACGCTCGTTTCTC 61.095 63.158 0.00 0.00 37.74 2.87
1335 1416 3.570212 ACCGGCAGCCTGGTTCTT 61.570 61.111 18.94 0.78 33.81 2.52
1347 1428 2.029964 GTTCTTGCCGACCGGTCA 59.970 61.111 32.80 13.09 37.65 4.02
1350 1431 4.760047 CTTGCCGACCGGTCAGGG 62.760 72.222 32.36 27.31 46.96 4.45
1429 1510 1.302033 CTGGACAGCGGCAACTTCT 60.302 57.895 1.45 0.00 0.00 2.85
1446 1527 2.550830 TCTTGCTTCAGGACTCCAAC 57.449 50.000 0.00 0.00 0.00 3.77
1557 1638 0.107993 TCGACCGATACCTGACGACT 60.108 55.000 0.00 0.00 0.00 4.18
2245 2329 1.227089 ATCATGTGGAGCTCGTCGC 60.227 57.895 7.83 1.91 39.57 5.19
2304 2388 2.279584 TTTGTTCGTCTCGCGGCA 60.280 55.556 6.13 0.00 41.72 5.69
2399 2492 5.550232 TGTGATTCAAAGGATGTTCATCG 57.450 39.130 6.70 0.00 0.00 3.84
2409 2502 3.056962 AGGATGTTCATCGATCGGATCAG 60.057 47.826 16.41 10.35 31.28 2.90
2525 2702 4.916183 AGAGTTAGCTGCTTGGATTCTTT 58.084 39.130 7.79 0.00 0.00 2.52
2563 2740 2.204291 TGGATTGTCCAGGGCCCT 60.204 61.111 22.28 22.28 42.67 5.19
2607 2784 5.068460 AGGATCAGTCATAGTGTCTGCTAAC 59.932 44.000 0.00 0.00 34.34 2.34
2691 2868 2.423185 GCGTCCATTCAACATCCAATGA 59.577 45.455 0.00 0.00 32.56 2.57
2739 2925 3.383185 TCAACACTTGGCAGTTTTTAGGG 59.617 43.478 0.00 0.00 0.00 3.53
2915 3104 8.350852 ACAAGTTCTATATATTACTCCCTCCG 57.649 38.462 0.00 0.00 0.00 4.63
2916 3105 7.949006 ACAAGTTCTATATATTACTCCCTCCGT 59.051 37.037 0.00 0.00 0.00 4.69
2917 3106 8.804204 CAAGTTCTATATATTACTCCCTCCGTT 58.196 37.037 0.00 0.00 0.00 4.44
2918 3107 8.578448 AGTTCTATATATTACTCCCTCCGTTC 57.422 38.462 0.00 0.00 0.00 3.95
2919 3108 7.614974 AGTTCTATATATTACTCCCTCCGTTCC 59.385 40.741 0.00 0.00 0.00 3.62
2920 3109 7.281366 TCTATATATTACTCCCTCCGTTCCT 57.719 40.000 0.00 0.00 0.00 3.36
2921 3110 8.397951 TCTATATATTACTCCCTCCGTTCCTA 57.602 38.462 0.00 0.00 0.00 2.94
2922 3111 8.839745 TCTATATATTACTCCCTCCGTTCCTAA 58.160 37.037 0.00 0.00 0.00 2.69
2923 3112 9.471702 CTATATATTACTCCCTCCGTTCCTAAA 57.528 37.037 0.00 0.00 0.00 1.85
2924 3113 8.912614 ATATATTACTCCCTCCGTTCCTAAAT 57.087 34.615 0.00 0.00 0.00 1.40
2926 3115 8.912614 ATATTACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
2927 3116 7.628501 ATTACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
2928 3117 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2929 3118 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2930 3119 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2931 3120 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2932 3121 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2933 3122 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2934 3123 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2935 3124 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
2936 3125 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2959 3148 9.924650 TTTTAGAGACTTCAATAAGACTACCAC 57.075 33.333 0.00 0.00 37.76 4.16
2960 3149 8.645814 TTAGAGACTTCAATAAGACTACCACA 57.354 34.615 0.00 0.00 37.76 4.17
2961 3150 7.726033 AGAGACTTCAATAAGACTACCACAT 57.274 36.000 0.00 0.00 37.76 3.21
2962 3151 8.824756 AGAGACTTCAATAAGACTACCACATA 57.175 34.615 0.00 0.00 37.76 2.29
2963 3152 8.688151 AGAGACTTCAATAAGACTACCACATAC 58.312 37.037 0.00 0.00 37.76 2.39
2964 3153 7.481642 AGACTTCAATAAGACTACCACATACG 58.518 38.462 0.00 0.00 36.21 3.06
2965 3154 6.570692 ACTTCAATAAGACTACCACATACGG 58.429 40.000 0.00 0.00 36.50 4.02
2966 3155 6.379133 ACTTCAATAAGACTACCACATACGGA 59.621 38.462 0.00 0.00 36.50 4.69
2967 3156 6.971726 TCAATAAGACTACCACATACGGAT 57.028 37.500 0.00 0.00 0.00 4.18
2968 3157 6.745116 TCAATAAGACTACCACATACGGATG 58.255 40.000 5.94 5.94 39.16 3.51
2970 3159 7.503230 TCAATAAGACTACCACATACGGATGTA 59.497 37.037 14.23 0.00 44.82 2.29
2971 3160 8.304596 CAATAAGACTACCACATACGGATGTAT 58.695 37.037 14.23 7.46 44.82 2.29
2972 3161 9.524496 AATAAGACTACCACATACGGATGTATA 57.476 33.333 14.23 8.27 44.82 1.47
2973 3162 9.696572 ATAAGACTACCACATACGGATGTATAT 57.303 33.333 14.23 4.37 44.82 0.86
2975 3164 8.734218 AGACTACCACATACGGATGTATATAG 57.266 38.462 14.23 16.35 44.82 1.31
2976 3165 8.546322 AGACTACCACATACGGATGTATATAGA 58.454 37.037 22.62 5.04 44.82 1.98
2977 3166 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
2978 3167 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
2979 3168 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
2981 3170 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
3011 3200 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
3012 3201 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
3013 3202 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
3014 3203 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
3015 3204 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
3016 3205 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
3017 3206 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
3018 3207 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
3019 3208 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
3020 3209 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
3021 3210 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
3022 3211 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
3023 3212 6.818644 ACTCATTTTGCTTCGTATGTAGTCAT 59.181 34.615 0.00 0.00 38.00 3.06
3024 3213 7.334421 ACTCATTTTGCTTCGTATGTAGTCATT 59.666 33.333 0.00 0.00 35.70 2.57
3025 3214 8.039603 TCATTTTGCTTCGTATGTAGTCATTT 57.960 30.769 0.00 0.00 35.70 2.32
3026 3215 9.157104 TCATTTTGCTTCGTATGTAGTCATTTA 57.843 29.630 0.00 0.00 35.70 1.40
3027 3216 9.935682 CATTTTGCTTCGTATGTAGTCATTTAT 57.064 29.630 0.00 0.00 35.70 1.40
3029 3218 9.767684 TTTTGCTTCGTATGTAGTCATTTATTG 57.232 29.630 0.00 0.00 35.70 1.90
3030 3219 8.710835 TTGCTTCGTATGTAGTCATTTATTGA 57.289 30.769 0.00 0.00 35.70 2.57
3031 3220 8.710835 TGCTTCGTATGTAGTCATTTATTGAA 57.289 30.769 0.00 0.00 35.70 2.69
3032 3221 9.157104 TGCTTCGTATGTAGTCATTTATTGAAA 57.843 29.630 0.00 0.00 35.70 2.69
3156 3557 6.477669 AACTAAACTAAAACTAAGCGAGGC 57.522 37.500 0.00 0.00 0.00 4.70
3177 3578 1.068417 CGGACGGTGACCTTGTTCA 59.932 57.895 0.00 0.00 0.00 3.18
3181 3582 2.289195 GGACGGTGACCTTGTTCACATA 60.289 50.000 0.00 0.00 46.68 2.29
3226 3628 4.364409 GTTGTTCGTGCCGTCGCC 62.364 66.667 0.00 0.00 0.00 5.54
3333 3736 1.906824 TCCGACACCACCCAGTCTC 60.907 63.158 0.00 0.00 32.68 3.36
3334 3737 2.258591 CGACACCACCCAGTCTCG 59.741 66.667 0.00 0.00 32.68 4.04
3335 3738 2.048127 GACACCACCCAGTCTCGC 60.048 66.667 0.00 0.00 0.00 5.03
3336 3739 3.916392 GACACCACCCAGTCTCGCG 62.916 68.421 0.00 0.00 0.00 5.87
3337 3740 3.680786 CACCACCCAGTCTCGCGA 61.681 66.667 9.26 9.26 0.00 5.87
3338 3741 3.374402 ACCACCCAGTCTCGCGAG 61.374 66.667 30.03 30.03 0.00 5.03
3339 3742 4.135153 CCACCCAGTCTCGCGAGG 62.135 72.222 33.98 21.86 0.00 4.63
3340 3743 3.374402 CACCCAGTCTCGCGAGGT 61.374 66.667 33.98 22.55 0.00 3.85
3341 3744 3.063084 ACCCAGTCTCGCGAGGTC 61.063 66.667 33.98 25.62 0.00 3.85
3342 3745 3.062466 CCCAGTCTCGCGAGGTCA 61.062 66.667 33.98 14.26 0.00 4.02
3343 3746 2.487428 CCAGTCTCGCGAGGTCAG 59.513 66.667 33.98 22.39 0.00 3.51
3344 3747 2.487428 CAGTCTCGCGAGGTCAGG 59.513 66.667 33.98 18.81 0.00 3.86
3345 3748 2.034376 AGTCTCGCGAGGTCAGGT 59.966 61.111 33.98 11.08 0.00 4.00
3346 3749 2.041686 AGTCTCGCGAGGTCAGGTC 61.042 63.158 33.98 15.76 0.00 3.85
3347 3750 2.750637 TCTCGCGAGGTCAGGTCC 60.751 66.667 33.98 0.00 0.00 4.46
3348 3751 4.180946 CTCGCGAGGTCAGGTCCG 62.181 72.222 28.40 0.00 0.00 4.79
3349 3752 4.710167 TCGCGAGGTCAGGTCCGA 62.710 66.667 3.71 0.00 0.00 4.55
3350 3753 4.477975 CGCGAGGTCAGGTCCGAC 62.478 72.222 0.00 5.57 35.03 4.79
3351 3754 3.371063 GCGAGGTCAGGTCCGACA 61.371 66.667 13.49 0.00 37.66 4.35
3352 3755 2.567049 CGAGGTCAGGTCCGACAC 59.433 66.667 13.49 7.66 37.66 3.67
3360 3763 3.239253 GGTCCGACACCACCCAGT 61.239 66.667 0.00 0.00 45.98 4.00
3361 3764 2.342648 GTCCGACACCACCCAGTC 59.657 66.667 0.00 0.00 0.00 3.51
3362 3765 2.200370 TCCGACACCACCCAGTCT 59.800 61.111 0.00 0.00 32.68 3.24
3386 3789 3.932580 GATGTCTGACGCCGTGCCA 62.933 63.158 0.00 0.00 0.00 4.92
3404 3807 0.813610 CAAACGTGGTCTGGCACTCA 60.814 55.000 0.00 0.00 0.00 3.41
3427 3831 0.393448 TCATGTTGAACGACCGGGAA 59.607 50.000 6.32 0.00 0.00 3.97
3480 3884 2.738846 CAATTCTGACAACGCAGTAGCT 59.261 45.455 0.00 0.00 45.00 3.32
3512 3916 2.616510 GCCAACTCCTGCTTGACATAGT 60.617 50.000 0.00 0.00 0.00 2.12
3536 4006 0.839946 AGGCAACAACAGTGACTCCT 59.160 50.000 0.00 0.00 41.41 3.69
3537 4007 0.947244 GGCAACAACAGTGACTCCTG 59.053 55.000 0.00 0.00 38.45 3.86
3556 4033 1.513158 CTTGACGCGATGGAGAGGT 59.487 57.895 15.93 0.00 0.00 3.85
3616 4093 2.210144 AAATAGCAGGGGCAAGCGGA 62.210 55.000 0.00 0.00 44.61 5.54
3636 4113 1.723608 CCAACACCGCTTCACTGCAA 61.724 55.000 0.00 0.00 0.00 4.08
3699 4464 1.760613 GGTATCCATGTCGTCAAGGGA 59.239 52.381 4.16 6.50 36.21 4.20
3733 4498 2.158623 AGCGGGAAGATTGGCATGAATA 60.159 45.455 0.00 0.00 0.00 1.75
4304 5307 0.386476 CAAGTGCTGGCTTGCTTTCA 59.614 50.000 4.89 0.00 39.26 2.69
4406 5410 1.203364 AGTCACTTGATCCCAGTCCCT 60.203 52.381 0.00 0.00 0.00 4.20
4407 5411 1.065854 GTCACTTGATCCCAGTCCCTG 60.066 57.143 0.00 0.00 0.00 4.45
4408 5412 0.393537 CACTTGATCCCAGTCCCTGC 60.394 60.000 0.00 0.00 0.00 4.85
4409 5413 0.548682 ACTTGATCCCAGTCCCTGCT 60.549 55.000 0.00 0.00 0.00 4.24
4410 5414 1.273838 ACTTGATCCCAGTCCCTGCTA 60.274 52.381 0.00 0.00 0.00 3.49
4411 5415 1.839994 CTTGATCCCAGTCCCTGCTAA 59.160 52.381 0.00 0.00 0.00 3.09
4462 5466 8.044060 CAAGACTGCAATGGTTCTTTATTAGA 57.956 34.615 0.00 0.00 0.00 2.10
4463 5467 7.617041 AGACTGCAATGGTTCTTTATTAGAC 57.383 36.000 0.00 0.00 30.90 2.59
4464 5468 7.398024 AGACTGCAATGGTTCTTTATTAGACT 58.602 34.615 0.00 0.00 30.90 3.24
4465 5469 7.335422 AGACTGCAATGGTTCTTTATTAGACTG 59.665 37.037 0.00 0.00 30.90 3.51
4466 5470 7.168219 ACTGCAATGGTTCTTTATTAGACTGA 58.832 34.615 0.00 0.00 30.90 3.41
4485 5489 5.233988 ACTGATGAAACTGAAGTGACTAGC 58.766 41.667 0.00 0.00 0.00 3.42
4495 5499 1.079819 GTGACTAGCGCTCTGGCAA 60.080 57.895 16.34 0.00 38.60 4.52
4686 5723 6.642683 ATTTTACATCCGAACAGAGTAACG 57.357 37.500 0.00 0.00 0.00 3.18
4804 5851 0.389948 AGCAACATCGTTCGGTCCTC 60.390 55.000 0.00 0.00 0.00 3.71
4878 6088 2.767505 AGTGACTTGCTAACCTTTCCG 58.232 47.619 0.00 0.00 0.00 4.30
4997 6207 2.542595 CGGCGTATTCTTTATGTGGACC 59.457 50.000 0.00 0.00 0.00 4.46
5159 6377 1.110442 CTCTCGCTCCAGTCCAAGAT 58.890 55.000 0.00 0.00 0.00 2.40
5183 6401 1.142778 GCATGGAAGACGAGTCGAGC 61.143 60.000 21.50 10.74 34.09 5.03
5226 6444 1.081892 CACTCTCTTTGACATGGCCG 58.918 55.000 0.00 0.00 0.00 6.13
5304 6522 1.226888 GGCGCGGTCTACAAGGTAG 60.227 63.158 8.83 0.00 0.00 3.18
5308 9183 1.467035 CGCGGTCTACAAGGTAGACAC 60.467 57.143 28.00 20.80 44.18 3.67
5320 9195 4.085357 AGGTAGACACTGCAACATTTCA 57.915 40.909 0.00 0.00 0.00 2.69
5327 9202 1.340889 ACTGCAACATTTCACGGCATT 59.659 42.857 0.00 0.00 33.50 3.56
5336 9215 2.307934 TTCACGGCATTGATCGATCA 57.692 45.000 23.99 23.99 34.44 2.92
5373 9266 3.697045 AGTGAAAACAAACGGTTGGATCA 59.303 39.130 19.08 14.98 40.35 2.92
5374 9267 4.340950 AGTGAAAACAAACGGTTGGATCAT 59.659 37.500 19.08 6.28 40.35 2.45
5375 9268 4.444056 GTGAAAACAAACGGTTGGATCATG 59.556 41.667 19.08 0.00 40.35 3.07
5376 9269 3.658757 AAACAAACGGTTGGATCATGG 57.341 42.857 19.08 0.00 40.35 3.66
5377 9270 2.577606 ACAAACGGTTGGATCATGGA 57.422 45.000 19.08 0.00 39.22 3.41
5378 9271 3.085952 ACAAACGGTTGGATCATGGAT 57.914 42.857 19.08 0.00 39.22 3.41
5379 9272 2.754552 ACAAACGGTTGGATCATGGATG 59.245 45.455 19.08 0.00 39.22 3.51
5521 9414 2.286523 CCTCGTCAGGCTCTTGGGT 61.287 63.158 0.00 0.00 30.98 4.51
5660 9564 2.093306 TGCGGTGAGTTTACAGATGG 57.907 50.000 0.00 0.00 0.00 3.51
5664 9568 4.081365 TGCGGTGAGTTTACAGATGGAATA 60.081 41.667 0.00 0.00 0.00 1.75
5880 9784 2.488355 GATCTTCGGTGGCGACGA 59.512 61.111 0.00 0.00 38.78 4.20
5941 9845 1.445582 GAAGGTCGTCGCATTCGGT 60.446 57.895 0.00 0.00 36.13 4.69
5962 9871 2.535984 TGCCGTGCGTTTTTATGTTTTG 59.464 40.909 0.00 0.00 0.00 2.44
5966 9875 5.154932 CCGTGCGTTTTTATGTTTTGGATA 58.845 37.500 0.00 0.00 0.00 2.59
6126 10035 1.644786 GAAGAACCGGGGAATGTGCG 61.645 60.000 6.32 0.00 0.00 5.34
6194 10103 3.170717 ACTAATCGGTCCCTCTGTTGAA 58.829 45.455 0.00 0.00 0.00 2.69
6198 10107 1.275291 TCGGTCCCTCTGTTGAATGAC 59.725 52.381 0.00 0.00 0.00 3.06
6201 10110 3.077359 GGTCCCTCTGTTGAATGACAAG 58.923 50.000 0.00 0.00 39.30 3.16
6203 10112 2.040278 TCCCTCTGTTGAATGACAAGGG 59.960 50.000 14.06 14.06 42.74 3.95
6214 10123 1.748732 TGACAAGGGGATGGTGGTAA 58.251 50.000 0.00 0.00 0.00 2.85
6215 10124 1.353022 TGACAAGGGGATGGTGGTAAC 59.647 52.381 0.00 0.00 0.00 2.50
6216 10125 0.326927 ACAAGGGGATGGTGGTAACG 59.673 55.000 0.00 0.00 42.51 3.18
6217 10126 0.326927 CAAGGGGATGGTGGTAACGT 59.673 55.000 0.00 0.00 42.51 3.99
6218 10127 0.326927 AAGGGGATGGTGGTAACGTG 59.673 55.000 0.00 0.00 42.51 4.49
6219 10128 0.545787 AGGGGATGGTGGTAACGTGA 60.546 55.000 0.00 0.00 42.51 4.35
6220 10129 0.392060 GGGGATGGTGGTAACGTGAC 60.392 60.000 0.00 0.00 42.51 3.67
6221 10130 0.611714 GGGATGGTGGTAACGTGACT 59.388 55.000 2.34 0.00 42.51 3.41
6296 10211 3.827898 GGCGCTGCTAGACGAGGT 61.828 66.667 7.64 0.00 0.00 3.85
6304 10219 3.064987 CTAGACGAGGTGGTGGCCG 62.065 68.421 0.00 0.00 0.00 6.13
6522 10437 4.299547 TCGTTGAGCTGCACCGCT 62.300 61.111 1.02 0.00 44.33 5.52
6581 10496 1.019278 CACGGTGCATTCGGTTAGCT 61.019 55.000 15.06 0.00 0.00 3.32
6582 10497 0.321298 ACGGTGCATTCGGTTAGCTT 60.321 50.000 15.06 0.00 0.00 3.74
6583 10498 1.066716 ACGGTGCATTCGGTTAGCTTA 60.067 47.619 15.06 0.00 0.00 3.09
6584 10499 2.004017 CGGTGCATTCGGTTAGCTTAA 58.996 47.619 0.00 0.00 0.00 1.85
6585 10500 2.417239 CGGTGCATTCGGTTAGCTTAAA 59.583 45.455 0.00 0.00 0.00 1.52
6586 10501 3.120130 CGGTGCATTCGGTTAGCTTAAAA 60.120 43.478 0.00 0.00 0.00 1.52
6587 10502 4.614078 CGGTGCATTCGGTTAGCTTAAAAA 60.614 41.667 0.00 0.00 0.00 1.94
6588 10503 4.619760 GGTGCATTCGGTTAGCTTAAAAAC 59.380 41.667 0.00 0.00 0.00 2.43
6589 10504 5.458015 GTGCATTCGGTTAGCTTAAAAACT 58.542 37.500 0.00 0.00 0.00 2.66
6590 10505 5.342259 GTGCATTCGGTTAGCTTAAAAACTG 59.658 40.000 0.00 0.00 34.01 3.16
6591 10506 4.857037 GCATTCGGTTAGCTTAAAAACTGG 59.143 41.667 6.16 0.00 33.62 4.00
6592 10507 5.564063 GCATTCGGTTAGCTTAAAAACTGGT 60.564 40.000 6.16 0.00 33.62 4.00
6593 10508 6.443792 CATTCGGTTAGCTTAAAAACTGGTT 58.556 36.000 6.16 0.00 33.62 3.67
6594 10509 5.678132 TCGGTTAGCTTAAAAACTGGTTC 57.322 39.130 6.16 0.00 33.62 3.62
6595 10510 4.516321 TCGGTTAGCTTAAAAACTGGTTCC 59.484 41.667 6.16 0.00 33.62 3.62
6596 10511 4.612033 CGGTTAGCTTAAAAACTGGTTCCG 60.612 45.833 0.00 0.00 0.00 4.30
6597 10512 4.276678 GGTTAGCTTAAAAACTGGTTCCGT 59.723 41.667 0.00 0.00 0.00 4.69
6598 10513 5.469760 GGTTAGCTTAAAAACTGGTTCCGTA 59.530 40.000 0.00 0.00 0.00 4.02
6599 10514 6.017192 GGTTAGCTTAAAAACTGGTTCCGTAA 60.017 38.462 0.00 0.00 0.00 3.18
6600 10515 5.684550 AGCTTAAAAACTGGTTCCGTAAG 57.315 39.130 0.00 0.00 0.00 2.34
6601 10516 5.128205 AGCTTAAAAACTGGTTCCGTAAGT 58.872 37.500 5.79 0.00 0.00 2.24
6602 10517 6.290605 AGCTTAAAAACTGGTTCCGTAAGTA 58.709 36.000 5.79 0.00 0.00 2.24
6603 10518 6.203530 AGCTTAAAAACTGGTTCCGTAAGTAC 59.796 38.462 5.79 0.00 0.00 2.73
6618 10533 6.001502 CGTAAGTACGGTTTTGATACTTCG 57.998 41.667 2.89 1.57 45.30 3.79
6619 10534 5.003778 CGTAAGTACGGTTTTGATACTTCGG 59.996 44.000 2.89 0.00 45.30 4.30
6620 10535 4.525912 AGTACGGTTTTGATACTTCGGT 57.474 40.909 0.00 0.00 0.00 4.69
6621 10536 5.643379 AGTACGGTTTTGATACTTCGGTA 57.357 39.130 0.00 0.00 34.66 4.02
6622 10537 6.024552 AGTACGGTTTTGATACTTCGGTAA 57.975 37.500 0.00 0.00 33.79 2.85
6623 10538 6.633856 AGTACGGTTTTGATACTTCGGTAAT 58.366 36.000 0.00 0.00 33.79 1.89
6624 10539 7.099120 AGTACGGTTTTGATACTTCGGTAATT 58.901 34.615 0.00 0.00 33.79 1.40
6625 10540 8.250332 AGTACGGTTTTGATACTTCGGTAATTA 58.750 33.333 0.00 0.00 33.79 1.40
6626 10541 7.529880 ACGGTTTTGATACTTCGGTAATTAG 57.470 36.000 0.00 0.00 33.79 1.73
6627 10542 6.036408 ACGGTTTTGATACTTCGGTAATTAGC 59.964 38.462 4.53 4.53 33.79 3.09
6628 10543 6.036300 CGGTTTTGATACTTCGGTAATTAGCA 59.964 38.462 14.62 0.00 33.79 3.49
6629 10544 7.413219 CGGTTTTGATACTTCGGTAATTAGCAA 60.413 37.037 14.62 7.25 33.79 3.91
6630 10545 8.238631 GGTTTTGATACTTCGGTAATTAGCAAA 58.761 33.333 14.62 1.73 35.57 3.68
6631 10546 9.783256 GTTTTGATACTTCGGTAATTAGCAAAT 57.217 29.630 14.62 1.79 36.57 2.32
6639 10554 8.745590 ACTTCGGTAATTAGCAAATATTTGGTT 58.254 29.630 31.34 19.33 45.64 3.67
6640 10555 9.233232 CTTCGGTAATTAGCAAATATTTGGTTC 57.767 33.333 31.34 15.12 45.64 3.62
6641 10556 7.708998 TCGGTAATTAGCAAATATTTGGTTCC 58.291 34.615 31.34 23.12 45.64 3.62
6642 10557 7.339721 TCGGTAATTAGCAAATATTTGGTTCCA 59.660 33.333 31.34 19.02 45.64 3.53
6643 10558 7.434013 CGGTAATTAGCAAATATTTGGTTCCAC 59.566 37.037 31.34 22.99 45.64 4.02
6644 10559 8.474831 GGTAATTAGCAAATATTTGGTTCCACT 58.525 33.333 31.34 19.15 45.64 4.00
6645 10560 9.301153 GTAATTAGCAAATATTTGGTTCCACTG 57.699 33.333 31.34 5.99 45.64 3.66
6646 10561 6.909550 TTAGCAAATATTTGGTTCCACTGT 57.090 33.333 31.34 3.95 45.64 3.55
6647 10562 5.138125 AGCAAATATTTGGTTCCACTGTG 57.862 39.130 23.71 0.00 45.64 3.66
6648 10563 3.679502 GCAAATATTTGGTTCCACTGTGC 59.320 43.478 25.61 7.34 38.57 4.57
6649 10564 4.561326 GCAAATATTTGGTTCCACTGTGCT 60.561 41.667 25.61 0.00 38.57 4.40
6650 10565 5.336372 GCAAATATTTGGTTCCACTGTGCTA 60.336 40.000 25.61 0.00 38.57 3.49
6651 10566 6.627953 GCAAATATTTGGTTCCACTGTGCTAT 60.628 38.462 25.61 0.00 38.57 2.97
6652 10567 7.416213 GCAAATATTTGGTTCCACTGTGCTATA 60.416 37.037 25.61 0.00 38.57 1.31
6653 10568 8.632679 CAAATATTTGGTTCCACTGTGCTATAT 58.367 33.333 18.72 0.00 34.59 0.86
6654 10569 9.860650 AAATATTTGGTTCCACTGTGCTATATA 57.139 29.630 1.29 0.00 0.00 0.86
6655 10570 8.848474 ATATTTGGTTCCACTGTGCTATATAC 57.152 34.615 1.29 0.00 0.00 1.47
6656 10571 5.950544 TTGGTTCCACTGTGCTATATACT 57.049 39.130 1.29 0.00 0.00 2.12
6657 10572 7.426606 TTTGGTTCCACTGTGCTATATACTA 57.573 36.000 1.29 0.00 0.00 1.82
6658 10573 6.401047 TGGTTCCACTGTGCTATATACTAC 57.599 41.667 1.29 0.00 0.00 2.73
6659 10574 6.134055 TGGTTCCACTGTGCTATATACTACT 58.866 40.000 1.29 0.00 0.00 2.57
6660 10575 7.292319 TGGTTCCACTGTGCTATATACTACTA 58.708 38.462 1.29 0.00 0.00 1.82
6661 10576 7.447545 TGGTTCCACTGTGCTATATACTACTAG 59.552 40.741 1.29 0.00 0.00 2.57
6662 10577 7.306953 GTTCCACTGTGCTATATACTACTAGC 58.693 42.308 1.29 0.00 40.60 3.42
6663 10578 6.540083 TCCACTGTGCTATATACTACTAGCA 58.460 40.000 1.29 2.32 45.99 3.49
6737 10652 5.652891 TCCTAATGTCTCAGTTGGTAGTCTC 59.347 44.000 0.00 0.00 0.00 3.36
6762 10678 3.353370 TCGGGTTTATTTTCGTCCCAT 57.647 42.857 0.00 0.00 38.15 4.00
6791 10707 3.187022 CGGTTTATTTTCGTCCTCCGTTT 59.813 43.478 0.00 0.00 37.94 3.60
6834 10750 0.031994 CCCACCTTCGCTTGGTTTTG 59.968 55.000 0.00 0.00 35.28 2.44
6877 10794 1.603455 TTCTTTTCCCCCGCAGCAG 60.603 57.895 0.00 0.00 0.00 4.24
6923 10844 2.983030 GACATGCAACGCCACCCA 60.983 61.111 0.00 0.00 0.00 4.51
6947 10868 2.259875 GATCTAGATCTCGGCGGCGG 62.260 65.000 31.73 21.26 35.04 6.13
6948 10869 4.708968 CTAGATCTCGGCGGCGGC 62.709 72.222 31.73 24.75 38.90 6.53
6969 10890 2.203714 GGCGGCTCCTCCCTCTAT 60.204 66.667 0.00 0.00 0.00 1.98
7030 10951 0.394192 CCTTCTCAGCGCCCATATCA 59.606 55.000 2.29 0.00 0.00 2.15
7301 11222 3.354131 GAGACGTCCTCCAATCAGC 57.646 57.895 13.01 0.00 35.87 4.26
7424 11345 1.518056 CGCCACAGCCACATCTTGTT 61.518 55.000 0.00 0.00 34.57 2.83
7464 11385 2.203451 GTAGATCGAGGGGGCGGA 60.203 66.667 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.213397 TCTTGATCAAATAGACCTCTGGTGAA 59.787 38.462 9.88 0.00 35.25 3.18
3 4 5.721480 TCTTGATCAAATAGACCTCTGGTGA 59.279 40.000 9.88 0.00 35.25 4.02
6 7 8.814931 AGATATCTTGATCAAATAGACCTCTGG 58.185 37.037 9.88 0.00 0.00 3.86
19 20 9.799106 GGGAAATCCTAAAAGATATCTTGATCA 57.201 33.333 18.61 0.00 34.55 2.92
20 21 9.237187 GGGGAAATCCTAAAAGATATCTTGATC 57.763 37.037 18.61 7.05 34.55 2.92
21 22 8.173412 GGGGGAAATCCTAAAAGATATCTTGAT 58.827 37.037 18.61 13.22 34.55 2.57
22 23 7.353595 AGGGGGAAATCCTAAAAGATATCTTGA 59.646 37.037 18.61 11.55 34.55 3.02
23 24 7.530435 AGGGGGAAATCCTAAAAGATATCTTG 58.470 38.462 18.61 6.47 34.55 3.02
24 25 7.729413 AGGGGGAAATCCTAAAAGATATCTT 57.271 36.000 12.37 12.37 35.30 2.40
25 26 7.729413 AAGGGGGAAATCCTAAAAGATATCT 57.271 36.000 0.00 0.00 33.58 1.98
26 27 8.670490 AGTAAGGGGGAAATCCTAAAAGATATC 58.330 37.037 0.00 0.00 33.58 1.63
27 28 8.597313 AGTAAGGGGGAAATCCTAAAAGATAT 57.403 34.615 0.00 0.00 33.58 1.63
28 29 9.699106 ATAGTAAGGGGGAAATCCTAAAAGATA 57.301 33.333 0.00 0.00 33.58 1.98
29 30 6.927691 AGTAAGGGGGAAATCCTAAAAGAT 57.072 37.500 0.00 0.00 33.58 2.40
30 31 9.699106 ATATAGTAAGGGGGAAATCCTAAAAGA 57.301 33.333 0.00 0.00 33.58 2.52
34 35 9.570448 CCTAATATAGTAAGGGGGAAATCCTAA 57.430 37.037 0.00 0.00 33.58 2.69
35 36 8.929214 TCCTAATATAGTAAGGGGGAAATCCTA 58.071 37.037 0.00 0.00 33.58 2.94
36 37 7.797298 TCCTAATATAGTAAGGGGGAAATCCT 58.203 38.462 0.00 0.00 35.88 3.24
37 38 7.683322 ACTCCTAATATAGTAAGGGGGAAATCC 59.317 40.741 3.45 0.00 34.98 3.01
38 39 8.682297 ACTCCTAATATAGTAAGGGGGAAATC 57.318 38.462 3.45 0.00 34.98 2.17
39 40 9.785854 CTACTCCTAATATAGTAAGGGGGAAAT 57.214 37.037 3.45 0.00 34.98 2.17
40 41 8.974059 TCTACTCCTAATATAGTAAGGGGGAAA 58.026 37.037 3.45 0.00 34.98 3.13
41 42 8.544123 TCTACTCCTAATATAGTAAGGGGGAA 57.456 38.462 3.45 0.00 34.98 3.97
42 43 7.971802 TCTCTACTCCTAATATAGTAAGGGGGA 59.028 40.741 3.45 0.00 34.98 4.81
43 44 8.172555 TCTCTACTCCTAATATAGTAAGGGGG 57.827 42.308 3.45 0.00 34.98 5.40
69 70 6.318900 CCCTGAGCGGAGAGTTAATAATTTTT 59.681 38.462 0.00 0.00 33.16 1.94
70 71 5.823045 CCCTGAGCGGAGAGTTAATAATTTT 59.177 40.000 0.00 0.00 33.16 1.82
71 72 5.368989 CCCTGAGCGGAGAGTTAATAATTT 58.631 41.667 0.00 0.00 33.16 1.82
72 73 4.743955 GCCCTGAGCGGAGAGTTAATAATT 60.744 45.833 0.00 0.00 33.16 1.40
73 74 3.244249 GCCCTGAGCGGAGAGTTAATAAT 60.244 47.826 0.00 0.00 33.16 1.28
74 75 2.102588 GCCCTGAGCGGAGAGTTAATAA 59.897 50.000 0.00 0.00 33.16 1.40
75 76 1.687123 GCCCTGAGCGGAGAGTTAATA 59.313 52.381 0.00 0.00 33.16 0.98
76 77 0.466124 GCCCTGAGCGGAGAGTTAAT 59.534 55.000 0.00 0.00 33.16 1.40
77 78 1.614241 GGCCCTGAGCGGAGAGTTAA 61.614 60.000 0.00 0.00 45.17 2.01
78 79 2.058595 GGCCCTGAGCGGAGAGTTA 61.059 63.158 0.00 0.00 45.17 2.24
79 80 3.394836 GGCCCTGAGCGGAGAGTT 61.395 66.667 0.00 0.00 45.17 3.01
80 81 3.914551 AAGGCCCTGAGCGGAGAGT 62.915 63.158 0.00 0.00 45.17 3.24
81 82 2.190488 AAAAGGCCCTGAGCGGAGAG 62.190 60.000 0.00 0.00 45.17 3.20
82 83 1.779061 AAAAAGGCCCTGAGCGGAGA 61.779 55.000 0.00 0.00 45.17 3.71
83 84 1.303643 AAAAAGGCCCTGAGCGGAG 60.304 57.895 0.00 0.00 45.17 4.63
84 85 1.603455 CAAAAAGGCCCTGAGCGGA 60.603 57.895 0.00 0.00 45.17 5.54
85 86 0.967380 ATCAAAAAGGCCCTGAGCGG 60.967 55.000 0.00 0.00 45.17 5.52
86 87 0.890683 AATCAAAAAGGCCCTGAGCG 59.109 50.000 0.00 0.00 45.17 5.03
87 88 1.895131 TGAATCAAAAAGGCCCTGAGC 59.105 47.619 0.00 0.00 42.60 4.26
88 89 4.562143 CCTTTGAATCAAAAAGGCCCTGAG 60.562 45.833 9.85 0.00 45.28 3.35
89 90 3.324556 CCTTTGAATCAAAAAGGCCCTGA 59.675 43.478 9.85 0.00 45.28 3.86
90 91 3.667360 CCTTTGAATCAAAAAGGCCCTG 58.333 45.455 9.85 0.00 45.28 4.45
96 97 8.057742 CGTGTGAAAATCCTTTGAATCAAAAAG 58.942 33.333 9.85 4.70 32.75 2.27
97 98 7.761704 TCGTGTGAAAATCCTTTGAATCAAAAA 59.238 29.630 9.85 1.77 32.75 1.94
98 99 7.261325 TCGTGTGAAAATCCTTTGAATCAAAA 58.739 30.769 9.85 0.00 32.75 2.44
99 100 6.800543 TCGTGTGAAAATCCTTTGAATCAAA 58.199 32.000 8.25 8.25 0.00 2.69
100 101 6.384258 TCGTGTGAAAATCCTTTGAATCAA 57.616 33.333 0.00 0.00 0.00 2.57
101 102 6.384258 TTCGTGTGAAAATCCTTTGAATCA 57.616 33.333 0.00 0.00 0.00 2.57
102 103 7.873739 AATTCGTGTGAAAATCCTTTGAATC 57.126 32.000 0.00 0.00 37.71 2.52
103 104 8.550376 CAAAATTCGTGTGAAAATCCTTTGAAT 58.450 29.630 0.00 0.00 37.71 2.57
104 105 7.761704 TCAAAATTCGTGTGAAAATCCTTTGAA 59.238 29.630 0.00 0.00 37.71 2.69
105 106 7.261325 TCAAAATTCGTGTGAAAATCCTTTGA 58.739 30.769 0.00 0.00 37.71 2.69
106 107 7.462109 TCAAAATTCGTGTGAAAATCCTTTG 57.538 32.000 0.00 0.00 37.71 2.77
107 108 7.171337 CCATCAAAATTCGTGTGAAAATCCTTT 59.829 33.333 0.00 0.00 37.71 3.11
108 109 6.646240 CCATCAAAATTCGTGTGAAAATCCTT 59.354 34.615 0.00 0.00 37.71 3.36
109 110 6.015519 TCCATCAAAATTCGTGTGAAAATCCT 60.016 34.615 0.00 0.00 37.71 3.24
110 111 6.155827 TCCATCAAAATTCGTGTGAAAATCC 58.844 36.000 0.00 0.00 37.71 3.01
111 112 7.816945 ATCCATCAAAATTCGTGTGAAAATC 57.183 32.000 0.00 0.00 37.71 2.17
112 113 7.118101 CCAATCCATCAAAATTCGTGTGAAAAT 59.882 33.333 0.00 0.00 37.71 1.82
113 114 6.423302 CCAATCCATCAAAATTCGTGTGAAAA 59.577 34.615 0.00 0.00 37.71 2.29
114 115 5.925397 CCAATCCATCAAAATTCGTGTGAAA 59.075 36.000 0.00 0.00 37.71 2.69
115 116 5.242615 TCCAATCCATCAAAATTCGTGTGAA 59.757 36.000 0.00 0.00 38.76 3.18
116 117 4.764308 TCCAATCCATCAAAATTCGTGTGA 59.236 37.500 0.00 0.00 0.00 3.58
117 118 5.058149 TCCAATCCATCAAAATTCGTGTG 57.942 39.130 0.00 0.00 0.00 3.82
118 119 5.720371 TTCCAATCCATCAAAATTCGTGT 57.280 34.783 0.00 0.00 0.00 4.49
119 120 6.817270 GATTCCAATCCATCAAAATTCGTG 57.183 37.500 0.00 0.00 0.00 4.35
154 155 9.226606 CCTACAATCAAACTACCAACATAGAAA 57.773 33.333 0.00 0.00 0.00 2.52
155 156 8.598916 TCCTACAATCAAACTACCAACATAGAA 58.401 33.333 0.00 0.00 0.00 2.10
156 157 8.141298 TCCTACAATCAAACTACCAACATAGA 57.859 34.615 0.00 0.00 0.00 1.98
157 158 8.964476 ATCCTACAATCAAACTACCAACATAG 57.036 34.615 0.00 0.00 0.00 2.23
158 159 9.173021 CAATCCTACAATCAAACTACCAACATA 57.827 33.333 0.00 0.00 0.00 2.29
159 160 7.888021 TCAATCCTACAATCAAACTACCAACAT 59.112 33.333 0.00 0.00 0.00 2.71
160 161 7.227873 TCAATCCTACAATCAAACTACCAACA 58.772 34.615 0.00 0.00 0.00 3.33
161 162 7.681939 TCAATCCTACAATCAAACTACCAAC 57.318 36.000 0.00 0.00 0.00 3.77
162 163 8.877864 ATTCAATCCTACAATCAAACTACCAA 57.122 30.769 0.00 0.00 0.00 3.67
163 164 8.328758 AGATTCAATCCTACAATCAAACTACCA 58.671 33.333 0.00 0.00 0.00 3.25
164 165 8.738645 AGATTCAATCCTACAATCAAACTACC 57.261 34.615 0.00 0.00 0.00 3.18
230 231 8.713708 TGTTTGGGTGAATTCTAAAATCCTAA 57.286 30.769 7.05 0.00 0.00 2.69
236 237 9.672673 TTCAAAATGTTTGGGTGAATTCTAAAA 57.327 25.926 7.05 0.00 0.00 1.52
274 275 4.487714 TGATGGCTTTCGTAGGAGAAAT 57.512 40.909 0.00 0.00 39.13 2.17
302 303 6.598064 CCCTTTTGAATCCTACGTGACTTTAT 59.402 38.462 0.00 0.00 0.00 1.40
303 304 5.935789 CCCTTTTGAATCCTACGTGACTTTA 59.064 40.000 0.00 0.00 0.00 1.85
311 312 5.897377 AATGTTCCCTTTTGAATCCTACG 57.103 39.130 0.00 0.00 0.00 3.51
334 335 9.466497 ACACACAAGAATAGGAAACATGATTAT 57.534 29.630 0.00 0.00 0.00 1.28
342 343 8.074370 GGTTCTAAACACACAAGAATAGGAAAC 58.926 37.037 0.00 0.00 32.26 2.78
344 345 6.425721 CGGTTCTAAACACACAAGAATAGGAA 59.574 38.462 0.00 0.00 32.26 3.36
346 347 5.699458 ACGGTTCTAAACACACAAGAATAGG 59.301 40.000 0.00 0.00 32.26 2.57
377 382 7.661437 ACCCAATAAAAATTTGAAGCCTCTTTC 59.339 33.333 0.00 0.00 0.00 2.62
392 398 4.580995 TCAGTTCGCTTGACCCAATAAAAA 59.419 37.500 0.00 0.00 0.00 1.94
394 400 3.745799 TCAGTTCGCTTGACCCAATAAA 58.254 40.909 0.00 0.00 0.00 1.40
420 444 7.013464 ACCACGAGGAATCTAACTATTAGAGTG 59.987 40.741 5.68 5.28 40.31 3.51
424 448 7.040473 ACACCACGAGGAATCTAACTATTAG 57.960 40.000 5.68 0.00 38.69 1.73
426 450 5.934402 ACACCACGAGGAATCTAACTATT 57.066 39.130 5.68 0.00 38.69 1.73
429 453 4.081807 GGTTACACCACGAGGAATCTAACT 60.082 45.833 5.68 0.00 38.42 2.24
438 462 1.375523 GGCTGGTTACACCACGAGG 60.376 63.158 0.00 0.00 44.79 4.63
441 467 1.002624 ATGGGCTGGTTACACCACG 60.003 57.895 0.00 0.00 44.79 4.94
467 493 6.567891 GCGAGCACAACTAAATTTAGGACTTT 60.568 38.462 25.25 10.65 35.08 2.66
476 502 6.144402 CAGAAAAATGCGAGCACAACTAAATT 59.856 34.615 0.00 0.00 0.00 1.82
478 504 4.975502 CAGAAAAATGCGAGCACAACTAAA 59.024 37.500 0.00 0.00 0.00 1.85
481 507 2.618241 TCAGAAAAATGCGAGCACAACT 59.382 40.909 0.00 0.00 0.00 3.16
511 538 8.172484 CCGAAACGAACATCAATGAAAAGTATA 58.828 33.333 0.00 0.00 0.00 1.47
522 549 1.722464 CGTAGCCGAAACGAACATCAA 59.278 47.619 0.00 0.00 42.90 2.57
534 561 2.130395 CTACATACGTCTCGTAGCCGA 58.870 52.381 0.00 0.00 45.45 5.54
537 564 3.555139 AGTCACTACATACGTCTCGTAGC 59.445 47.826 15.19 4.04 45.45 3.58
545 572 7.380536 TGGATTAACAAAGTCACTACATACGT 58.619 34.615 0.00 0.00 0.00 3.57
559 586 6.042777 CGAGATACTCAGCTGGATTAACAAA 58.957 40.000 15.13 0.00 0.00 2.83
564 591 5.536538 ACATTCGAGATACTCAGCTGGATTA 59.463 40.000 15.13 3.06 0.00 1.75
570 597 7.753309 ATAAGTACATTCGAGATACTCAGCT 57.247 36.000 0.00 0.00 0.00 4.24
592 619 6.614694 ACACACACACCTTATTCCTGTATA 57.385 37.500 0.00 0.00 0.00 1.47
596 623 2.736721 CGACACACACACCTTATTCCTG 59.263 50.000 0.00 0.00 0.00 3.86
613 641 2.030628 TCACTTCTATGAACGCACGACA 60.031 45.455 0.00 0.00 0.00 4.35
614 642 2.592194 TCACTTCTATGAACGCACGAC 58.408 47.619 0.00 0.00 0.00 4.34
615 643 2.228103 ACTCACTTCTATGAACGCACGA 59.772 45.455 0.00 0.00 0.00 4.35
618 646 6.090763 CACATAAACTCACTTCTATGAACGCA 59.909 38.462 0.00 0.00 0.00 5.24
622 650 6.090763 CGCACACATAAACTCACTTCTATGAA 59.909 38.462 0.00 0.00 0.00 2.57
628 656 3.247648 ACACGCACACATAAACTCACTTC 59.752 43.478 0.00 0.00 0.00 3.01
646 674 1.460743 CCACACTTGCTCACATACACG 59.539 52.381 0.00 0.00 0.00 4.49
687 742 4.385405 GGCTGCTGGCGAGACAGT 62.385 66.667 16.86 0.00 42.94 3.55
688 743 4.079850 AGGCTGCTGGCGAGACAG 62.080 66.667 11.49 13.20 44.18 3.51
689 744 4.074526 GAGGCTGCTGGCGAGACA 62.075 66.667 11.49 0.00 44.18 3.41
809 875 1.355005 CACGGATGTGTTCGCATGTA 58.645 50.000 3.52 0.00 41.34 2.29
954 1026 5.576774 TGACTATCATGTGCAAGTTTACTCG 59.423 40.000 0.00 0.00 0.00 4.18
989 1061 1.337728 TGGCACTCATTAGTCACCACG 60.338 52.381 0.00 0.00 35.16 4.94
1003 1075 2.353958 CCAGCACCAGATGGCACT 59.646 61.111 0.00 0.00 45.53 4.40
1008 1080 0.681887 TGATTGCCCAGCACCAGATG 60.682 55.000 0.00 0.00 38.71 2.90
1009 1081 0.682209 GTGATTGCCCAGCACCAGAT 60.682 55.000 0.00 0.00 38.71 2.90
1018 1090 2.037053 CCGTTGTTGTGATTGCCCA 58.963 52.632 0.00 0.00 0.00 5.36
1019 1091 1.372872 GCCGTTGTTGTGATTGCCC 60.373 57.895 0.00 0.00 0.00 5.36
1026 1098 2.049248 GCCATGGCCGTTGTTGTG 60.049 61.111 27.24 0.00 34.56 3.33
1071 1149 0.252927 AGAAGAGGAGGAACAGGGGG 60.253 60.000 0.00 0.00 0.00 5.40
1083 1161 4.168291 GGCGCAGGGGAGAAGAGG 62.168 72.222 10.83 0.00 0.00 3.69
1347 1428 4.070552 GACCAGAACGCGAGCCCT 62.071 66.667 15.93 0.13 0.00 5.19
1350 1431 3.173240 GACGACCAGAACGCGAGC 61.173 66.667 15.93 3.51 0.00 5.03
1352 1433 4.394078 CCGACGACCAGAACGCGA 62.394 66.667 15.93 0.00 34.42 5.87
1429 1510 0.250295 CCGTTGGAGTCCTGAAGCAA 60.250 55.000 11.33 0.00 0.00 3.91
1545 1626 0.968901 TCGCCCAAGTCGTCAGGTAT 60.969 55.000 0.00 0.00 0.00 2.73
1583 1664 2.735478 CGAACGTGTAGCCGCCAA 60.735 61.111 0.00 0.00 0.00 4.52
1589 1670 1.581912 TCGATCGCGAACGTGTAGC 60.582 57.895 32.73 2.64 44.78 3.58
1763 1844 4.083324 CGTCTACCAGGAACGTGTAGTAAA 60.083 45.833 9.14 0.00 38.09 2.01
1764 1845 3.436704 CGTCTACCAGGAACGTGTAGTAA 59.563 47.826 9.14 0.00 38.09 2.24
1800 1881 1.212229 GAACCTCGAGACCACGTCC 59.788 63.158 15.71 0.00 32.18 4.79
2245 2329 2.278206 CTGCCGGACGTCGATCAG 60.278 66.667 5.05 11.69 42.43 2.90
2304 2388 5.017490 AGGAGATCCATACGTAAATCGGAT 58.983 41.667 15.18 15.18 44.83 4.18
2394 2487 1.081175 GCGCTGATCCGATCGATGA 60.081 57.895 18.66 6.61 0.00 2.92
2399 2492 0.510359 GAATGTGCGCTGATCCGATC 59.490 55.000 9.73 1.01 0.00 3.69
2409 2502 2.097954 TGAGATCAAATGGAATGTGCGC 59.902 45.455 0.00 0.00 29.22 6.09
2525 2702 7.889873 TCCAAGTAGTTGATTCCTTTTTCAA 57.110 32.000 12.04 0.00 35.46 2.69
2559 2736 6.628919 TTTCTACAACAAGTCTAAAAGGGC 57.371 37.500 0.00 0.00 0.00 5.19
2563 2740 9.621629 TGATCCTTTTCTACAACAAGTCTAAAA 57.378 29.630 0.00 0.00 0.00 1.52
2607 2784 3.849951 CACCCGATCCCAGTCCGG 61.850 72.222 0.00 0.00 42.64 5.14
2691 2868 4.471025 GGTTTTTCATGGATCAATCCCCTT 59.529 41.667 6.57 0.00 46.59 3.95
2739 2925 0.666374 AAAACTACAAGTGTGGGCGC 59.334 50.000 0.00 0.00 0.00 6.53
2907 3096 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2908 3097 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2909 3098 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2910 3099 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2933 3122 9.924650 GTGGTAGTCTTATTGAAGTCTCTAAAA 57.075 33.333 0.00 0.00 33.74 1.52
2934 3123 9.085645 TGTGGTAGTCTTATTGAAGTCTCTAAA 57.914 33.333 0.00 0.00 33.74 1.85
2935 3124 8.645814 TGTGGTAGTCTTATTGAAGTCTCTAA 57.354 34.615 0.00 0.00 33.74 2.10
2936 3125 8.824756 ATGTGGTAGTCTTATTGAAGTCTCTA 57.175 34.615 0.00 0.00 33.74 2.43
2937 3126 7.726033 ATGTGGTAGTCTTATTGAAGTCTCT 57.274 36.000 0.00 0.00 33.74 3.10
2938 3127 7.644551 CGTATGTGGTAGTCTTATTGAAGTCTC 59.355 40.741 0.00 0.00 33.74 3.36
2939 3128 7.416438 CCGTATGTGGTAGTCTTATTGAAGTCT 60.416 40.741 0.00 0.00 35.57 3.24
2940 3129 6.696148 CCGTATGTGGTAGTCTTATTGAAGTC 59.304 42.308 0.00 0.00 34.03 3.01
2941 3130 6.379133 TCCGTATGTGGTAGTCTTATTGAAGT 59.621 38.462 0.00 0.00 34.03 3.01
2942 3131 6.802608 TCCGTATGTGGTAGTCTTATTGAAG 58.197 40.000 0.00 0.00 0.00 3.02
2943 3132 6.778834 TCCGTATGTGGTAGTCTTATTGAA 57.221 37.500 0.00 0.00 0.00 2.69
2944 3133 6.322969 ACATCCGTATGTGGTAGTCTTATTGA 59.677 38.462 0.00 0.00 44.79 2.57
2945 3134 6.513180 ACATCCGTATGTGGTAGTCTTATTG 58.487 40.000 0.00 0.00 44.79 1.90
2946 3135 6.726490 ACATCCGTATGTGGTAGTCTTATT 57.274 37.500 0.00 0.00 44.79 1.40
2947 3136 9.696572 ATATACATCCGTATGTGGTAGTCTTAT 57.303 33.333 3.56 0.00 45.99 1.73
2949 3138 9.175312 CTATATACATCCGTATGTGGTAGTCTT 57.825 37.037 3.56 0.00 45.99 3.01
2950 3139 8.546322 TCTATATACATCCGTATGTGGTAGTCT 58.454 37.037 3.56 0.00 45.99 3.24
2951 3140 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
2952 3141 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
2953 3142 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
2955 3144 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
2988 3177 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
2989 3178 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
2990 3179 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
2991 3180 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
2992 3181 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
2993 3182 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
2994 3183 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
2995 3184 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
2996 3185 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
2997 3186 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
2998 3187 6.163476 TGACTACATACGAAGCAAAATGAGT 58.837 36.000 0.00 0.00 0.00 3.41
2999 3188 6.647212 TGACTACATACGAAGCAAAATGAG 57.353 37.500 0.00 0.00 0.00 2.90
3000 3189 7.609760 AATGACTACATACGAAGCAAAATGA 57.390 32.000 0.00 0.00 35.50 2.57
3001 3190 9.935682 ATAAATGACTACATACGAAGCAAAATG 57.064 29.630 0.00 0.00 35.50 2.32
3003 3192 9.767684 CAATAAATGACTACATACGAAGCAAAA 57.232 29.630 0.00 0.00 35.50 2.44
3004 3193 9.157104 TCAATAAATGACTACATACGAAGCAAA 57.843 29.630 0.00 0.00 35.50 3.68
3005 3194 8.710835 TCAATAAATGACTACATACGAAGCAA 57.289 30.769 0.00 0.00 35.50 3.91
3006 3195 8.710835 TTCAATAAATGACTACATACGAAGCA 57.289 30.769 0.00 0.00 37.92 3.91
3172 3573 3.688694 ACTAGGGCGTTTATGTGAACA 57.311 42.857 0.00 0.00 0.00 3.18
3177 3578 3.680754 GCTACCAACTAGGGCGTTTATGT 60.681 47.826 0.00 0.00 43.89 2.29
3181 3582 0.688487 TGCTACCAACTAGGGCGTTT 59.312 50.000 0.00 0.00 43.89 3.60
3333 3736 4.477975 GTCGGACCTGACCTCGCG 62.478 72.222 0.00 0.00 32.61 5.87
3334 3737 3.371063 TGTCGGACCTGACCTCGC 61.371 66.667 5.55 0.00 38.11 5.03
3335 3738 2.567049 GTGTCGGACCTGACCTCG 59.433 66.667 5.55 0.00 38.11 4.63
3336 3739 1.906824 TGGTGTCGGACCTGACCTC 60.907 63.158 14.85 6.95 46.32 3.85
3337 3740 2.200370 TGGTGTCGGACCTGACCT 59.800 61.111 14.85 0.00 46.32 3.85
3338 3741 2.342648 GTGGTGTCGGACCTGACC 59.657 66.667 5.55 7.39 46.32 4.02
3339 3742 2.342648 GGTGGTGTCGGACCTGAC 59.657 66.667 5.55 8.87 46.32 3.51
3340 3743 2.920912 GGGTGGTGTCGGACCTGA 60.921 66.667 5.55 0.00 46.32 3.86
3341 3744 3.238497 TGGGTGGTGTCGGACCTG 61.238 66.667 5.55 0.00 46.32 4.00
3342 3745 2.923035 CTGGGTGGTGTCGGACCT 60.923 66.667 5.55 0.00 46.32 3.85
3343 3746 3.236003 GACTGGGTGGTGTCGGACC 62.236 68.421 5.55 0.00 46.37 4.46
3344 3747 2.207924 AGACTGGGTGGTGTCGGAC 61.208 63.158 0.00 0.00 38.16 4.79
3345 3748 2.200370 AGACTGGGTGGTGTCGGA 59.800 61.111 0.00 0.00 38.16 4.55
3346 3749 2.343758 CAGACTGGGTGGTGTCGG 59.656 66.667 0.00 0.00 38.16 4.79
3347 3750 2.343758 CCAGACTGGGTGGTGTCG 59.656 66.667 14.26 0.00 38.16 4.35
3348 3751 2.032681 GCCAGACTGGGTGGTGTC 59.967 66.667 23.09 0.32 38.19 3.67
3349 3752 2.772191 TGCCAGACTGGGTGGTGT 60.772 61.111 23.09 0.00 38.19 4.16
3350 3753 2.281761 GTGCCAGACTGGGTGGTG 60.282 66.667 23.09 0.00 38.19 4.17
3351 3754 3.941188 CGTGCCAGACTGGGTGGT 61.941 66.667 23.09 0.00 38.19 4.16
3352 3755 2.959484 ATCGTGCCAGACTGGGTGG 61.959 63.158 23.09 0.00 38.19 4.61
3353 3756 1.742880 CATCGTGCCAGACTGGGTG 60.743 63.158 23.09 0.00 38.19 4.61
3354 3757 2.172483 GACATCGTGCCAGACTGGGT 62.172 60.000 23.09 10.86 38.19 4.51
3355 3758 1.448540 GACATCGTGCCAGACTGGG 60.449 63.158 23.09 6.76 38.19 4.45
3356 3759 0.738762 CAGACATCGTGCCAGACTGG 60.739 60.000 17.83 17.83 41.55 4.00
3357 3760 0.244721 TCAGACATCGTGCCAGACTG 59.755 55.000 0.00 0.00 0.00 3.51
3358 3761 0.244994 GTCAGACATCGTGCCAGACT 59.755 55.000 0.00 0.00 0.00 3.24
3359 3762 1.073216 CGTCAGACATCGTGCCAGAC 61.073 60.000 0.41 0.00 0.00 3.51
3360 3763 1.212751 CGTCAGACATCGTGCCAGA 59.787 57.895 0.41 0.00 0.00 3.86
3361 3764 2.447887 GCGTCAGACATCGTGCCAG 61.448 63.158 0.41 0.00 0.00 4.85
3362 3765 2.432456 GCGTCAGACATCGTGCCA 60.432 61.111 0.41 0.00 0.00 4.92
3386 3789 0.108585 ATGAGTGCCAGACCACGTTT 59.891 50.000 0.00 0.00 40.59 3.60
3396 3799 2.861274 TCAACATGAACATGAGTGCCA 58.139 42.857 19.56 2.52 41.20 4.92
3512 3916 2.092968 AGTCACTGTTGTTGCCTCTCAA 60.093 45.455 0.00 0.00 0.00 3.02
3526 3930 2.819667 CGTCAAGCAGGAGTCACTG 58.180 57.895 4.71 4.71 41.41 3.66
3537 4007 1.880340 CCTCTCCATCGCGTCAAGC 60.880 63.158 5.77 0.00 43.95 4.01
3616 4093 2.186826 GCAGTGAAGCGGTGTTGGT 61.187 57.895 0.00 0.00 0.00 3.67
3636 4113 0.536460 CCCTACTTTGGGTGTTGCGT 60.536 55.000 0.00 0.00 42.25 5.24
3733 4498 2.050351 CTCCAACGACTGTCGCGT 60.050 61.111 28.27 14.95 45.12 6.01
4304 5307 5.433051 TCAATGGAGGGGATTGATCTAAAGT 59.567 40.000 0.00 0.00 35.38 2.66
4406 5410 0.846015 ATAGCAGCCATGGGTTAGCA 59.154 50.000 23.56 12.71 0.00 3.49
4407 5411 1.242076 CATAGCAGCCATGGGTTAGC 58.758 55.000 15.37 15.96 0.00 3.09
4408 5412 2.224606 CACATAGCAGCCATGGGTTAG 58.775 52.381 15.37 5.18 0.00 2.34
4409 5413 1.750332 GCACATAGCAGCCATGGGTTA 60.750 52.381 15.37 5.68 44.79 2.85
4410 5414 1.039233 GCACATAGCAGCCATGGGTT 61.039 55.000 15.37 3.10 44.79 4.11
4411 5415 1.454479 GCACATAGCAGCCATGGGT 60.454 57.895 11.62 11.62 44.79 4.51
4460 5464 5.543507 AGTCACTTCAGTTTCATCAGTCT 57.456 39.130 0.00 0.00 0.00 3.24
4461 5465 5.347364 GCTAGTCACTTCAGTTTCATCAGTC 59.653 44.000 0.00 0.00 0.00 3.51
4462 5466 5.233988 GCTAGTCACTTCAGTTTCATCAGT 58.766 41.667 0.00 0.00 0.00 3.41
4463 5467 4.325741 CGCTAGTCACTTCAGTTTCATCAG 59.674 45.833 0.00 0.00 0.00 2.90
4464 5468 4.237724 CGCTAGTCACTTCAGTTTCATCA 58.762 43.478 0.00 0.00 0.00 3.07
4465 5469 3.061429 GCGCTAGTCACTTCAGTTTCATC 59.939 47.826 0.00 0.00 0.00 2.92
4466 5470 2.996621 GCGCTAGTCACTTCAGTTTCAT 59.003 45.455 0.00 0.00 0.00 2.57
4485 5489 1.267806 AGTGTTTCATTTGCCAGAGCG 59.732 47.619 0.00 0.00 44.31 5.03
4634 5659 8.931385 AATTGCAAAACTTATAGGTATTGCTG 57.069 30.769 1.71 0.00 42.59 4.41
4655 5680 9.655769 CTCTGTTCGGATGTAAAATATGAATTG 57.344 33.333 0.00 0.00 0.00 2.32
4657 5682 8.964476 ACTCTGTTCGGATGTAAAATATGAAT 57.036 30.769 0.00 0.00 0.00 2.57
4662 5699 7.315142 ACGTTACTCTGTTCGGATGTAAAATA 58.685 34.615 0.00 0.00 0.00 1.40
4686 5723 3.005897 TGAGAACTGAGGACTTGCAGTAC 59.994 47.826 0.00 0.00 44.06 2.73
4726 5772 5.934043 TCGGTATTGATCAATGATCATGACC 59.066 40.000 29.08 29.08 46.52 4.02
4804 5851 5.281693 TGAATTTGTGCATCAACGACTAG 57.718 39.130 0.00 0.00 35.61 2.57
4878 6088 1.609320 GGAAGCTGTCAAGGTCACCTC 60.609 57.143 0.00 0.00 31.29 3.85
4997 6207 5.277047 GCACCTTTTCTTCTGAAGAACTTG 58.723 41.667 27.56 21.41 46.53 3.16
5065 6283 6.710692 CAGGTTTGCAGATGGTAAAATTTC 57.289 37.500 0.00 0.00 32.72 2.17
5159 6377 2.025155 GACTCGTCTTCCATGCTCCTA 58.975 52.381 0.00 0.00 0.00 2.94
5183 6401 3.616956 TCATGTAGTCCTTTGCTCTGG 57.383 47.619 0.00 0.00 0.00 3.86
5226 6444 2.464459 CGGTGGAAGAGGCAATCGC 61.464 63.158 0.00 0.00 37.44 4.58
5304 6522 1.925946 GCCGTGAAATGTTGCAGTGTC 60.926 52.381 0.00 0.00 0.00 3.67
5308 9183 1.722464 CAATGCCGTGAAATGTTGCAG 59.278 47.619 0.00 0.00 35.10 4.41
5344 9223 6.586844 CCAACCGTTTGTTTTCACTTTCTTAA 59.413 34.615 0.00 0.00 34.00 1.85
5373 9266 0.477204 CTCACCCTGCATCCATCCAT 59.523 55.000 0.00 0.00 0.00 3.41
5374 9267 1.917495 CTCACCCTGCATCCATCCA 59.083 57.895 0.00 0.00 0.00 3.41
5375 9268 1.527844 GCTCACCCTGCATCCATCC 60.528 63.158 0.00 0.00 0.00 3.51
5376 9269 0.106819 AAGCTCACCCTGCATCCATC 60.107 55.000 0.00 0.00 0.00 3.51
5377 9270 0.395311 CAAGCTCACCCTGCATCCAT 60.395 55.000 0.00 0.00 0.00 3.41
5378 9271 1.001764 CAAGCTCACCCTGCATCCA 60.002 57.895 0.00 0.00 0.00 3.41
5379 9272 1.751927 CCAAGCTCACCCTGCATCC 60.752 63.158 0.00 0.00 0.00 3.51
5521 9414 1.078918 CTCTCCATGGACGCAGCAA 60.079 57.895 11.44 0.00 0.00 3.91
5636 9529 5.277490 CCATCTGTAAACTCACCGCAATATG 60.277 44.000 0.00 0.00 0.00 1.78
5660 9564 6.914757 GCCTTATCTGCTCAAACACATTATTC 59.085 38.462 0.00 0.00 0.00 1.75
5664 9568 4.338879 AGCCTTATCTGCTCAAACACATT 58.661 39.130 0.00 0.00 32.41 2.71
5857 9761 3.036429 GCCACCGAAGATCCTGGCT 62.036 63.158 0.12 0.00 39.18 4.75
5880 9784 4.295119 GGGTGTGTGAGTCGGCGT 62.295 66.667 6.85 0.00 0.00 5.68
5941 9845 2.493713 AAACATAAAAACGCACGGCA 57.506 40.000 0.00 0.00 0.00 5.69
5947 9851 6.399144 CCGTTGTATCCAAAACATAAAAACGC 60.399 38.462 0.00 0.00 29.30 4.84
5962 9871 1.141019 TCAGCTCGCCGTTGTATCC 59.859 57.895 0.00 0.00 0.00 2.59
5998 9907 2.114670 ATGTACCCGCTGCATGCAC 61.115 57.895 18.46 12.94 43.06 4.57
6093 10002 2.765250 TTCTTCCTGCCGCTGACGAC 62.765 60.000 0.00 0.00 43.93 4.34
6194 10103 1.979809 TACCACCATCCCCTTGTCAT 58.020 50.000 0.00 0.00 0.00 3.06
6198 10107 0.326927 ACGTTACCACCATCCCCTTG 59.673 55.000 0.00 0.00 0.00 3.61
6201 10110 0.392060 GTCACGTTACCACCATCCCC 60.392 60.000 0.00 0.00 0.00 4.81
6203 10112 2.733227 CGTAGTCACGTTACCACCATCC 60.733 54.545 0.00 0.00 43.31 3.51
6216 10125 1.269102 ACAGCACACTCACGTAGTCAC 60.269 52.381 0.00 0.00 41.61 3.67
6217 10126 1.029681 ACAGCACACTCACGTAGTCA 58.970 50.000 0.00 0.00 41.61 3.41
6218 10127 1.409412 CACAGCACACTCACGTAGTC 58.591 55.000 0.00 0.00 41.61 2.59
6219 10128 3.225210 TGCACAGCACACTCACGTAGT 62.225 52.381 0.00 0.00 34.81 2.73
6220 10129 0.597377 TGCACAGCACACTCACGTAG 60.597 55.000 0.00 0.00 31.71 3.51
6221 10130 0.033366 ATGCACAGCACACTCACGTA 59.967 50.000 0.00 0.00 43.04 3.57
6507 10422 0.097674 CATTAGCGGTGCAGCTCAAC 59.902 55.000 14.92 0.67 45.67 3.18
6522 10437 3.677700 CGACGGTGAGGGTGATTTCATTA 60.678 47.826 0.00 0.00 0.00 1.90
6581 10496 6.523676 CGTACTTACGGAACCAGTTTTTAA 57.476 37.500 0.64 0.00 45.30 1.52
6596 10511 5.863935 ACCGAAGTATCAAAACCGTACTTAC 59.136 40.000 0.00 0.00 38.42 2.34
6597 10512 6.024552 ACCGAAGTATCAAAACCGTACTTA 57.975 37.500 0.00 0.00 38.42 2.24
6598 10513 4.886579 ACCGAAGTATCAAAACCGTACTT 58.113 39.130 0.00 0.00 40.35 2.24
6599 10514 4.525912 ACCGAAGTATCAAAACCGTACT 57.474 40.909 0.00 0.00 0.00 2.73
6600 10515 6.892310 ATTACCGAAGTATCAAAACCGTAC 57.108 37.500 0.00 0.00 0.00 3.67
6601 10516 7.222611 GCTAATTACCGAAGTATCAAAACCGTA 59.777 37.037 0.00 0.00 0.00 4.02
6602 10517 6.036408 GCTAATTACCGAAGTATCAAAACCGT 59.964 38.462 0.00 0.00 0.00 4.83
6603 10518 6.036300 TGCTAATTACCGAAGTATCAAAACCG 59.964 38.462 0.00 0.00 0.00 4.44
6604 10519 7.311364 TGCTAATTACCGAAGTATCAAAACC 57.689 36.000 0.00 0.00 0.00 3.27
6605 10520 9.783256 ATTTGCTAATTACCGAAGTATCAAAAC 57.217 29.630 0.00 0.00 35.85 2.43
6612 10527 9.398538 ACCAAATATTTGCTAATTACCGAAGTA 57.601 29.630 20.67 0.00 36.86 2.24
6613 10528 8.288689 ACCAAATATTTGCTAATTACCGAAGT 57.711 30.769 20.67 7.23 36.86 3.01
6614 10529 9.233232 GAACCAAATATTTGCTAATTACCGAAG 57.767 33.333 20.67 6.67 36.86 3.79
6615 10530 8.192110 GGAACCAAATATTTGCTAATTACCGAA 58.808 33.333 20.67 0.00 36.86 4.30
6616 10531 7.339721 TGGAACCAAATATTTGCTAATTACCGA 59.660 33.333 20.67 6.70 36.86 4.69
6617 10532 7.434013 GTGGAACCAAATATTTGCTAATTACCG 59.566 37.037 20.67 7.92 36.86 4.02
6618 10533 8.474831 AGTGGAACCAAATATTTGCTAATTACC 58.525 33.333 20.67 15.26 37.80 2.85
6619 10534 9.301153 CAGTGGAACCAAATATTTGCTAATTAC 57.699 33.333 20.67 13.02 37.80 1.89
6620 10535 9.030452 ACAGTGGAACCAAATATTTGCTAATTA 57.970 29.630 20.67 4.41 37.80 1.40
6621 10536 7.818930 CACAGTGGAACCAAATATTTGCTAATT 59.181 33.333 20.67 12.17 37.80 1.40
6622 10537 7.322664 CACAGTGGAACCAAATATTTGCTAAT 58.677 34.615 20.67 7.60 37.80 1.73
6623 10538 6.686630 CACAGTGGAACCAAATATTTGCTAA 58.313 36.000 20.67 3.55 37.80 3.09
6624 10539 5.336372 GCACAGTGGAACCAAATATTTGCTA 60.336 40.000 20.67 4.74 37.80 3.49
6625 10540 4.561326 GCACAGTGGAACCAAATATTTGCT 60.561 41.667 20.67 10.92 37.80 3.91
6626 10541 3.679502 GCACAGTGGAACCAAATATTTGC 59.320 43.478 20.67 9.14 37.80 3.68
6627 10542 5.138125 AGCACAGTGGAACCAAATATTTG 57.862 39.130 19.40 19.40 37.80 2.32
6628 10543 8.766994 ATATAGCACAGTGGAACCAAATATTT 57.233 30.769 1.84 0.00 37.80 1.40
6629 10544 9.284968 GTATATAGCACAGTGGAACCAAATATT 57.715 33.333 1.84 0.00 37.80 1.28
6630 10545 8.660435 AGTATATAGCACAGTGGAACCAAATAT 58.340 33.333 1.84 0.00 37.80 1.28
6631 10546 8.029782 AGTATATAGCACAGTGGAACCAAATA 57.970 34.615 1.84 0.00 37.80 1.40
6632 10547 6.900194 AGTATATAGCACAGTGGAACCAAAT 58.100 36.000 1.84 0.00 37.80 2.32
6633 10548 6.308015 AGTATATAGCACAGTGGAACCAAA 57.692 37.500 1.84 0.00 37.80 3.28
6634 10549 5.950544 AGTATATAGCACAGTGGAACCAA 57.049 39.130 1.84 0.00 37.80 3.67
6635 10550 6.134055 AGTAGTATATAGCACAGTGGAACCA 58.866 40.000 1.84 0.00 37.80 3.67
6636 10551 6.651975 AGTAGTATATAGCACAGTGGAACC 57.348 41.667 1.84 0.00 37.80 3.62
6637 10552 7.306953 GCTAGTAGTATATAGCACAGTGGAAC 58.693 42.308 1.84 0.00 43.17 3.62
6638 10553 7.450124 GCTAGTAGTATATAGCACAGTGGAA 57.550 40.000 1.84 0.00 43.17 3.53
6690 10605 6.222038 AGTAGAGATACATCGGCTCAAAAA 57.778 37.500 0.00 0.00 0.00 1.94
6691 10606 5.221263 GGAGTAGAGATACATCGGCTCAAAA 60.221 44.000 0.00 0.00 31.18 2.44
6692 10607 4.278669 GGAGTAGAGATACATCGGCTCAAA 59.721 45.833 0.00 0.00 31.18 2.69
6693 10608 3.821600 GGAGTAGAGATACATCGGCTCAA 59.178 47.826 0.00 0.00 31.18 3.02
6694 10609 3.073209 AGGAGTAGAGATACATCGGCTCA 59.927 47.826 0.00 0.00 31.18 4.26
6695 10610 3.681593 AGGAGTAGAGATACATCGGCTC 58.318 50.000 0.00 0.00 0.00 4.70
6696 10611 3.799432 AGGAGTAGAGATACATCGGCT 57.201 47.619 0.00 0.00 0.00 5.52
6697 10612 5.416326 ACATTAGGAGTAGAGATACATCGGC 59.584 44.000 0.00 0.00 0.00 5.54
6698 10613 6.882140 AGACATTAGGAGTAGAGATACATCGG 59.118 42.308 0.00 0.00 0.00 4.18
6699 10614 7.604545 TGAGACATTAGGAGTAGAGATACATCG 59.395 40.741 0.00 0.00 0.00 3.84
6700 10615 8.856153 TGAGACATTAGGAGTAGAGATACATC 57.144 38.462 0.00 0.00 0.00 3.06
6701 10616 8.444783 ACTGAGACATTAGGAGTAGAGATACAT 58.555 37.037 0.00 0.00 0.00 2.29
6702 10617 7.807198 ACTGAGACATTAGGAGTAGAGATACA 58.193 38.462 0.00 0.00 0.00 2.29
6703 10618 8.564574 CAACTGAGACATTAGGAGTAGAGATAC 58.435 40.741 0.00 0.00 0.00 2.24
6704 10619 7.721842 CCAACTGAGACATTAGGAGTAGAGATA 59.278 40.741 0.00 0.00 0.00 1.98
6745 10660 5.158494 GTGTTGATGGGACGAAAATAAACC 58.842 41.667 0.00 0.00 0.00 3.27
6746 10661 5.158494 GGTGTTGATGGGACGAAAATAAAC 58.842 41.667 0.00 0.00 0.00 2.01
6762 10678 3.250521 GGACGAAAATAAACCGGTGTTGA 59.749 43.478 8.52 0.00 34.13 3.18
6890 10807 6.635030 TGCATGTCGTGTAGTATCTCTATT 57.365 37.500 0.00 0.00 0.00 1.73
6923 10844 1.448985 GCCGAGATCTAGATCGAGCT 58.551 55.000 23.77 8.83 42.48 4.09
7043 10964 0.738975 CTCCACTACGGCTCGAATCA 59.261 55.000 1.50 0.00 33.14 2.57
7257 11178 1.359459 GGATCGAGAAACACCGCCAC 61.359 60.000 0.00 0.00 0.00 5.01
7424 11345 3.770040 CCGGTGCGACCCATCTCA 61.770 66.667 0.00 0.00 33.75 3.27
7473 11394 2.214216 CCAGTCCTCGGACACCCAA 61.214 63.158 17.68 0.00 46.76 4.12
7474 11395 2.603473 CCAGTCCTCGGACACCCA 60.603 66.667 17.68 0.00 46.76 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.