Multiple sequence alignment - TraesCS2D01G217500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G217500 chr2D 100.000 6228 0 0 1 6228 180989526 180995753 0.000000e+00 11502.0
1 TraesCS2D01G217500 chr2D 90.459 545 39 12 5690 6226 599216261 599215722 0.000000e+00 706.0
2 TraesCS2D01G217500 chr2D 78.509 228 46 2 4329 4553 190033624 190033397 5.030000e-31 147.0
3 TraesCS2D01G217500 chr2D 81.503 173 32 0 4340 4512 638339785 638339613 6.510000e-30 143.0
4 TraesCS2D01G217500 chr2A 91.981 2893 123 45 2756 5599 195646276 195649108 0.000000e+00 3956.0
5 TraesCS2D01G217500 chr2A 91.693 2239 120 38 500 2710 195644080 195646280 0.000000e+00 3044.0
6 TraesCS2D01G217500 chr2A 78.802 217 46 0 4337 4553 203904289 203904073 5.030000e-31 147.0
7 TraesCS2D01G217500 chr2A 77.889 199 32 10 4037 4229 763869248 763869440 5.100000e-21 113.0
8 TraesCS2D01G217500 chr2B 88.966 2746 165 64 2 2711 237638299 237640942 0.000000e+00 3265.0
9 TraesCS2D01G217500 chr2B 94.404 1358 41 15 4242 5575 237642805 237644151 0.000000e+00 2054.0
10 TraesCS2D01G217500 chr2B 93.346 1022 41 10 3238 4238 237641748 237642763 0.000000e+00 1485.0
11 TraesCS2D01G217500 chr2B 91.816 501 30 6 2744 3241 237640945 237641437 0.000000e+00 688.0
12 TraesCS2D01G217500 chr2B 78.802 217 46 0 4337 4553 246262345 246262129 5.030000e-31 147.0
13 TraesCS2D01G217500 chr2B 80.925 173 33 0 4340 4512 797260467 797260295 3.030000e-28 137.0
14 TraesCS2D01G217500 chr2B 77.387 199 33 9 4037 4229 797232288 797232096 2.370000e-19 108.0
15 TraesCS2D01G217500 chr2B 79.592 147 26 4 4085 4229 797260728 797260584 1.100000e-17 102.0
16 TraesCS2D01G217500 chr2B 92.308 39 3 0 4172 4210 576586282 576586244 8.720000e-04 56.5
17 TraesCS2D01G217500 chr5D 91.493 529 28 9 5707 6228 421866602 421867120 0.000000e+00 712.0
18 TraesCS2D01G217500 chr6D 91.288 528 35 7 5687 6205 12660344 12660869 0.000000e+00 710.0
19 TraesCS2D01G217500 chr5B 90.164 549 43 10 5687 6228 34545966 34546510 0.000000e+00 704.0
20 TraesCS2D01G217500 chr5B 90.110 546 44 7 5687 6228 594156821 594157360 0.000000e+00 701.0
21 TraesCS2D01G217500 chr5B 89.981 519 44 6 5690 6201 594197506 594198023 0.000000e+00 664.0
22 TraesCS2D01G217500 chr7D 90.146 548 40 13 5687 6226 133609217 133609758 0.000000e+00 701.0
23 TraesCS2D01G217500 chr7D 90.092 545 40 13 5690 6226 133495281 133494743 0.000000e+00 695.0
24 TraesCS2D01G217500 chr5A 90.000 550 43 9 5687 6228 325181857 325182402 0.000000e+00 701.0
25 TraesCS2D01G217500 chrUn 80.682 176 34 0 4337 4512 302674554 302674729 3.030000e-28 137.0
26 TraesCS2D01G217500 chrUn 77.387 199 33 10 4037 4229 302674248 302674440 2.370000e-19 108.0
27 TraesCS2D01G217500 chrUn 92.500 40 3 0 4172 4211 188195505 188195466 2.420000e-04 58.4
28 TraesCS2D01G217500 chr3B 92.500 40 3 0 4172 4211 207123123 207123162 2.420000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G217500 chr2D 180989526 180995753 6227 False 11502 11502 100.000 1 6228 1 chr2D.!!$F1 6227
1 TraesCS2D01G217500 chr2D 599215722 599216261 539 True 706 706 90.459 5690 6226 1 chr2D.!!$R2 536
2 TraesCS2D01G217500 chr2A 195644080 195649108 5028 False 3500 3956 91.837 500 5599 2 chr2A.!!$F2 5099
3 TraesCS2D01G217500 chr2B 237638299 237644151 5852 False 1873 3265 92.133 2 5575 4 chr2B.!!$F1 5573
4 TraesCS2D01G217500 chr5D 421866602 421867120 518 False 712 712 91.493 5707 6228 1 chr5D.!!$F1 521
5 TraesCS2D01G217500 chr6D 12660344 12660869 525 False 710 710 91.288 5687 6205 1 chr6D.!!$F1 518
6 TraesCS2D01G217500 chr5B 34545966 34546510 544 False 704 704 90.164 5687 6228 1 chr5B.!!$F1 541
7 TraesCS2D01G217500 chr5B 594156821 594157360 539 False 701 701 90.110 5687 6228 1 chr5B.!!$F2 541
8 TraesCS2D01G217500 chr5B 594197506 594198023 517 False 664 664 89.981 5690 6201 1 chr5B.!!$F3 511
9 TraesCS2D01G217500 chr7D 133609217 133609758 541 False 701 701 90.146 5687 6226 1 chr7D.!!$F1 539
10 TraesCS2D01G217500 chr7D 133494743 133495281 538 True 695 695 90.092 5690 6226 1 chr7D.!!$R1 536
11 TraesCS2D01G217500 chr5A 325181857 325182402 545 False 701 701 90.000 5687 6228 1 chr5A.!!$F1 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 942 0.037232 ACCTCTTTCGTAGCAGCACC 60.037 55.0 0.00 0.00 0.0 5.01 F
920 943 0.247736 CCTCTTTCGTAGCAGCACCT 59.752 55.0 0.00 0.00 0.0 4.00 F
952 975 0.256464 ACGACCTCTTCTCCTCCGAT 59.744 55.0 0.00 0.00 0.0 4.18 F
2016 2049 0.258484 TGCCACATTACTCCCCATGG 59.742 55.0 4.14 4.14 0.0 3.66 F
2797 2851 0.250901 CAGTGGTTGGGGTCTCCTTG 60.251 60.0 0.00 0.00 36.2 3.61 F
4291 4733 0.321564 TTGGGCCAACTCTGACGATG 60.322 55.0 16.66 0.00 0.0 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 2046 0.103208 GGAGTTGAGCGATCGTCCAT 59.897 55.0 17.81 0.17 0.00 3.41 R
2046 2084 0.240945 ATTTCGGCTCAAAACCTGCG 59.759 50.0 0.00 0.00 0.00 5.18 R
2673 2724 0.457851 TTGTTTTCAACACGGCTGGG 59.542 50.0 0.00 0.00 41.97 4.45 R
3203 3271 0.036732 GGCCGGCTTCATCCATATCA 59.963 55.0 28.56 0.00 0.00 2.15 R
4622 5077 0.168348 CCTCTGGTGACACGTCGTAG 59.832 60.0 0.00 0.00 35.60 3.51 R
5653 6128 0.036765 CGAAATGGACGAAGGGTGGA 60.037 55.0 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.524621 CTACTTCTGCGGCCCATGG 60.525 63.158 4.14 4.14 0.00 3.66
22 23 1.971505 CTACTTCTGCGGCCCATGGA 61.972 60.000 15.22 0.00 0.00 3.41
52 53 0.389296 TGAATGTAGTCACCGGTGCG 60.389 55.000 30.25 7.79 0.00 5.34
54 55 0.389426 AATGTAGTCACCGGTGCGTC 60.389 55.000 30.25 20.56 0.00 5.19
55 56 1.529152 ATGTAGTCACCGGTGCGTCA 61.529 55.000 30.25 23.92 0.00 4.35
57 58 0.801067 GTAGTCACCGGTGCGTCATC 60.801 60.000 30.25 13.19 0.00 2.92
60 61 2.048222 CACCGGTGCGTCATCACT 60.048 61.111 24.02 0.00 37.16 3.41
64 65 0.248661 CCGGTGCGTCATCACTAGAG 60.249 60.000 0.00 0.00 37.16 2.43
65 66 0.248661 CGGTGCGTCATCACTAGAGG 60.249 60.000 0.00 0.00 37.16 3.69
66 67 0.528684 GGTGCGTCATCACTAGAGGC 60.529 60.000 0.00 0.00 44.62 4.70
67 68 0.528684 GTGCGTCATCACTAGAGGCC 60.529 60.000 0.00 0.00 43.97 5.19
68 69 0.970427 TGCGTCATCACTAGAGGCCA 60.970 55.000 5.01 0.00 43.97 5.36
69 70 0.390860 GCGTCATCACTAGAGGCCAT 59.609 55.000 5.01 0.00 40.07 4.40
70 71 1.202580 GCGTCATCACTAGAGGCCATT 60.203 52.381 5.01 0.00 40.07 3.16
71 72 2.477825 CGTCATCACTAGAGGCCATTG 58.522 52.381 5.01 0.00 0.00 2.82
75 76 4.033009 TCATCACTAGAGGCCATTGAGAA 58.967 43.478 5.01 0.00 0.00 2.87
76 77 4.471025 TCATCACTAGAGGCCATTGAGAAA 59.529 41.667 5.01 0.00 0.00 2.52
78 79 3.198635 TCACTAGAGGCCATTGAGAAAGG 59.801 47.826 5.01 0.00 0.00 3.11
82 83 3.200522 GCCATTGAGAAAGGCCGG 58.799 61.111 0.00 0.00 42.58 6.13
90 91 0.536460 GAGAAAGGCCGGAAACACCA 60.536 55.000 5.05 0.00 38.90 4.17
99 100 1.778027 CGGAAACACCACCGTTGTCC 61.778 60.000 0.00 0.00 43.53 4.02
103 104 0.107268 AACACCACCGTTGTCCCTAC 59.893 55.000 0.00 0.00 0.00 3.18
119 120 0.038251 CTACGCAGCCACACTCTCAA 60.038 55.000 0.00 0.00 0.00 3.02
120 121 0.319555 TACGCAGCCACACTCTCAAC 60.320 55.000 0.00 0.00 0.00 3.18
124 125 1.811558 GCAGCCACACTCTCAACTTCA 60.812 52.381 0.00 0.00 0.00 3.02
127 128 1.876156 GCCACACTCTCAACTTCAAGG 59.124 52.381 0.00 0.00 0.00 3.61
130 131 2.805099 CACACTCTCAACTTCAAGGAGC 59.195 50.000 0.00 0.00 0.00 4.70
131 132 2.224402 ACACTCTCAACTTCAAGGAGCC 60.224 50.000 0.00 0.00 0.00 4.70
148 156 2.586079 CGCCGGAGATCGCATGTT 60.586 61.111 5.05 0.00 37.59 2.71
149 157 2.874694 CGCCGGAGATCGCATGTTG 61.875 63.158 5.05 0.00 37.59 3.33
151 159 2.537560 CCGGAGATCGCATGTTGCC 61.538 63.158 0.00 0.00 41.12 4.52
153 161 1.815421 GGAGATCGCATGTTGCCGT 60.815 57.895 0.00 0.00 41.12 5.68
205 213 1.151668 GTGCCATCATCGACCTATGC 58.848 55.000 0.00 0.00 0.00 3.14
207 215 2.029020 GTGCCATCATCGACCTATGCTA 60.029 50.000 0.00 0.00 0.00 3.49
221 229 4.233789 CCTATGCTATTGAGACTTCGCTC 58.766 47.826 0.00 0.00 35.46 5.03
222 230 3.808466 ATGCTATTGAGACTTCGCTCA 57.192 42.857 0.00 0.00 42.81 4.26
228 236 0.811915 TGAGACTTCGCTCAGCTACC 59.188 55.000 0.00 0.00 39.84 3.18
238 246 1.803252 GCTCAGCTACCGGTTTCTAGC 60.803 57.143 15.04 16.65 36.40 3.42
242 250 1.146358 GCTACCGGTTTCTAGCAGCG 61.146 60.000 19.86 6.42 36.22 5.18
245 253 1.519455 CCGGTTTCTAGCAGCGAGG 60.519 63.158 13.13 0.00 37.32 4.63
249 257 0.179097 GTTTCTAGCAGCGAGGAGGG 60.179 60.000 2.30 0.00 0.00 4.30
271 279 5.825151 GGGAAAAGAGATGAATGGGAAGTAG 59.175 44.000 0.00 0.00 0.00 2.57
278 286 0.106894 GAATGGGAAGTAGGAGGCGG 59.893 60.000 0.00 0.00 0.00 6.13
282 290 4.222847 GAAGTAGGAGGCGGCGGG 62.223 72.222 9.78 0.00 0.00 6.13
308 316 2.494530 TTTGTGTTGGAAGGCGGCC 61.495 57.895 12.11 12.11 0.00 6.13
337 345 2.029470 GGTGTCTTCTCTCTCCACACTG 60.029 54.545 0.00 0.00 37.96 3.66
338 346 2.625790 GTGTCTTCTCTCTCCACACTGT 59.374 50.000 0.00 0.00 35.50 3.55
339 347 3.068873 GTGTCTTCTCTCTCCACACTGTT 59.931 47.826 0.00 0.00 35.50 3.16
340 348 3.706594 TGTCTTCTCTCTCCACACTGTTT 59.293 43.478 0.00 0.00 0.00 2.83
341 349 4.202161 TGTCTTCTCTCTCCACACTGTTTC 60.202 45.833 0.00 0.00 0.00 2.78
342 350 3.322254 TCTTCTCTCTCCACACTGTTTCC 59.678 47.826 0.00 0.00 0.00 3.13
343 351 2.964209 TCTCTCTCCACACTGTTTCCT 58.036 47.619 0.00 0.00 0.00 3.36
346 354 4.899457 TCTCTCTCCACACTGTTTCCTTTA 59.101 41.667 0.00 0.00 0.00 1.85
347 355 5.544176 TCTCTCTCCACACTGTTTCCTTTAT 59.456 40.000 0.00 0.00 0.00 1.40
348 356 5.551233 TCTCTCCACACTGTTTCCTTTATG 58.449 41.667 0.00 0.00 0.00 1.90
349 357 4.651778 TCTCCACACTGTTTCCTTTATGG 58.348 43.478 0.00 0.00 37.10 2.74
350 358 4.349636 TCTCCACACTGTTTCCTTTATGGA 59.650 41.667 0.00 0.00 44.51 3.41
351 359 4.394729 TCCACACTGTTTCCTTTATGGAC 58.605 43.478 0.00 0.00 46.14 4.02
352 360 4.141287 CCACACTGTTTCCTTTATGGACA 58.859 43.478 0.00 0.00 46.14 4.02
353 361 4.216257 CCACACTGTTTCCTTTATGGACAG 59.784 45.833 5.00 5.00 46.14 3.51
354 362 5.063204 CACACTGTTTCCTTTATGGACAGA 58.937 41.667 11.23 0.00 46.14 3.41
355 363 5.530915 CACACTGTTTCCTTTATGGACAGAA 59.469 40.000 11.23 0.00 46.14 3.02
356 364 6.039270 CACACTGTTTCCTTTATGGACAGAAA 59.961 38.462 11.23 0.00 46.14 2.52
357 365 6.605594 ACACTGTTTCCTTTATGGACAGAAAA 59.394 34.615 11.23 0.00 46.14 2.29
358 366 6.918022 CACTGTTTCCTTTATGGACAGAAAAC 59.082 38.462 11.23 3.40 46.14 2.43
359 367 6.605594 ACTGTTTCCTTTATGGACAGAAAACA 59.394 34.615 11.23 6.95 46.14 2.83
360 368 7.287696 ACTGTTTCCTTTATGGACAGAAAACAT 59.712 33.333 11.23 0.00 46.14 2.71
361 369 8.017418 TGTTTCCTTTATGGACAGAAAACATT 57.983 30.769 0.00 0.00 46.14 2.71
362 370 8.482128 TGTTTCCTTTATGGACAGAAAACATTT 58.518 29.630 0.00 0.00 46.14 2.32
363 371 8.978539 GTTTCCTTTATGGACAGAAAACATTTC 58.021 33.333 0.00 0.00 46.14 2.17
418 426 5.643339 CGTGTAGCAATCCTATGAAGTTC 57.357 43.478 0.00 0.00 0.00 3.01
430 438 8.918202 ATCCTATGAAGTTCAAGTGTTTAACA 57.082 30.769 10.14 0.00 0.00 2.41
461 469 5.670792 ATCATCACCTACTCCACGTAAAA 57.329 39.130 0.00 0.00 0.00 1.52
462 470 5.670792 TCATCACCTACTCCACGTAAAAT 57.329 39.130 0.00 0.00 0.00 1.82
463 471 6.045072 TCATCACCTACTCCACGTAAAATT 57.955 37.500 0.00 0.00 0.00 1.82
464 472 6.469410 TCATCACCTACTCCACGTAAAATTT 58.531 36.000 0.00 0.00 0.00 1.82
465 473 6.370442 TCATCACCTACTCCACGTAAAATTTG 59.630 38.462 0.00 0.00 0.00 2.32
466 474 5.613329 TCACCTACTCCACGTAAAATTTGT 58.387 37.500 0.00 0.00 0.00 2.83
467 475 5.697633 TCACCTACTCCACGTAAAATTTGTC 59.302 40.000 0.00 0.00 0.00 3.18
468 476 4.999311 ACCTACTCCACGTAAAATTTGTCC 59.001 41.667 0.00 0.00 0.00 4.02
469 477 5.221783 ACCTACTCCACGTAAAATTTGTCCT 60.222 40.000 0.00 0.00 0.00 3.85
470 478 6.014327 ACCTACTCCACGTAAAATTTGTCCTA 60.014 38.462 0.00 0.00 0.00 2.94
471 479 6.875195 CCTACTCCACGTAAAATTTGTCCTAA 59.125 38.462 0.00 0.00 0.00 2.69
472 480 6.796705 ACTCCACGTAAAATTTGTCCTAAG 57.203 37.500 0.00 0.00 0.00 2.18
473 481 6.293698 ACTCCACGTAAAATTTGTCCTAAGT 58.706 36.000 0.00 0.00 0.00 2.24
474 482 7.444299 ACTCCACGTAAAATTTGTCCTAAGTA 58.556 34.615 0.00 0.00 0.00 2.24
475 483 7.601508 ACTCCACGTAAAATTTGTCCTAAGTAG 59.398 37.037 0.00 0.00 0.00 2.57
476 484 7.669427 TCCACGTAAAATTTGTCCTAAGTAGA 58.331 34.615 0.00 0.00 0.00 2.59
477 485 8.149647 TCCACGTAAAATTTGTCCTAAGTAGAA 58.850 33.333 0.00 0.00 0.00 2.10
478 486 8.776470 CCACGTAAAATTTGTCCTAAGTAGAAA 58.224 33.333 0.00 0.00 0.00 2.52
497 505 7.981789 AGTAGAAAAAGCTGATTGACGATGATA 59.018 33.333 0.00 0.00 0.00 2.15
521 529 0.250338 ACTCTTTGGACACGCCCTTC 60.250 55.000 0.00 0.00 34.97 3.46
524 534 0.882927 CTTTGGACACGCCCTTCGAA 60.883 55.000 0.00 0.00 41.67 3.71
539 549 3.983344 CCTTCGAAAAGCACTCCATTTTG 59.017 43.478 0.00 0.00 0.00 2.44
626 640 7.493743 TGTCCTCGATCAAAGATACTAGTAC 57.506 40.000 4.31 0.00 0.00 2.73
627 641 6.485984 TGTCCTCGATCAAAGATACTAGTACC 59.514 42.308 4.31 0.00 0.00 3.34
628 642 6.485984 GTCCTCGATCAAAGATACTAGTACCA 59.514 42.308 4.31 0.00 0.00 3.25
652 666 5.978934 ATCAACGACTAACGAGTTTTGTT 57.021 34.783 0.00 0.00 45.77 2.83
691 705 3.559655 TGAGTCTCAAACAATGTGAACCG 59.440 43.478 0.00 0.00 33.62 4.44
721 735 0.679960 AGCCCCTTCCGTTGCATAAC 60.680 55.000 0.00 0.00 0.00 1.89
732 746 3.617263 CCGTTGCATAACTCTAACCACTC 59.383 47.826 0.00 0.00 34.60 3.51
735 750 5.408604 CGTTGCATAACTCTAACCACTCTTT 59.591 40.000 0.00 0.00 34.60 2.52
908 931 2.739379 CGAGGAAGAAGCAACCTCTTTC 59.261 50.000 0.00 2.08 45.40 2.62
909 932 2.739379 GAGGAAGAAGCAACCTCTTTCG 59.261 50.000 0.00 0.00 44.54 3.46
910 933 2.104963 AGGAAGAAGCAACCTCTTTCGT 59.895 45.455 0.00 0.00 0.00 3.85
911 934 3.323979 AGGAAGAAGCAACCTCTTTCGTA 59.676 43.478 0.00 0.00 0.00 3.43
912 935 3.680458 GGAAGAAGCAACCTCTTTCGTAG 59.320 47.826 0.00 0.00 0.00 3.51
913 936 2.689646 AGAAGCAACCTCTTTCGTAGC 58.310 47.619 0.00 0.00 0.00 3.58
914 937 2.037251 AGAAGCAACCTCTTTCGTAGCA 59.963 45.455 0.00 0.00 0.00 3.49
915 938 2.086054 AGCAACCTCTTTCGTAGCAG 57.914 50.000 0.00 0.00 0.00 4.24
918 941 1.461127 CAACCTCTTTCGTAGCAGCAC 59.539 52.381 0.00 0.00 0.00 4.40
919 942 0.037232 ACCTCTTTCGTAGCAGCACC 60.037 55.000 0.00 0.00 0.00 5.01
920 943 0.247736 CCTCTTTCGTAGCAGCACCT 59.752 55.000 0.00 0.00 0.00 4.00
921 944 1.354040 CTCTTTCGTAGCAGCACCTG 58.646 55.000 0.00 0.00 34.12 4.00
922 945 0.679505 TCTTTCGTAGCAGCACCTGT 59.320 50.000 0.00 0.00 33.43 4.00
932 955 1.202348 GCAGCACCTGTTTTATCCACC 59.798 52.381 0.00 0.00 33.43 4.61
947 970 0.900647 CCACCACGACCTCTTCTCCT 60.901 60.000 0.00 0.00 0.00 3.69
952 975 0.256464 ACGACCTCTTCTCCTCCGAT 59.744 55.000 0.00 0.00 0.00 4.18
967 997 1.227089 CGATCCCACAAGAGAGCCG 60.227 63.158 0.00 0.00 0.00 5.52
970 1000 1.965754 ATCCCACAAGAGAGCCGAGC 61.966 60.000 0.00 0.00 0.00 5.03
976 1006 2.411504 AAGAGAGCCGAGCGAGGAC 61.412 63.158 4.64 0.00 0.00 3.85
977 1007 2.826738 GAGAGCCGAGCGAGGACT 60.827 66.667 4.64 3.09 0.00 3.85
1125 1155 0.319900 GCAACGAGAAGCTCCTGTCA 60.320 55.000 0.00 0.00 0.00 3.58
1158 1188 1.757682 TCTCGCTCTCCTTCTTCTCC 58.242 55.000 0.00 0.00 0.00 3.71
1461 1491 2.266055 CAGAGCTTCGACCACCCC 59.734 66.667 0.00 0.00 0.00 4.95
1584 1614 2.742372 CCCGGGAACTTCACGCTG 60.742 66.667 18.48 0.00 42.99 5.18
1629 1659 2.959357 GCTCTTCATATGGCGCCGC 61.959 63.158 23.90 11.95 0.00 6.53
1630 1660 2.661537 TCTTCATATGGCGCCGCG 60.662 61.111 23.90 8.83 0.00 6.46
1845 1878 1.592223 GGAGACGTGCTACCAGCTT 59.408 57.895 0.00 0.00 42.97 3.74
1974 2007 0.457851 CCTGCCTCAGAGGTTAGACG 59.542 60.000 18.37 2.31 37.80 4.18
1996 2029 4.130118 GGCATTCCGATCATGTAGAAACT 58.870 43.478 0.00 0.00 0.00 2.66
2000 2033 3.531538 TCCGATCATGTAGAAACTTGCC 58.468 45.455 0.00 0.00 32.26 4.52
2001 2034 3.055458 TCCGATCATGTAGAAACTTGCCA 60.055 43.478 0.00 0.00 32.26 4.92
2013 2046 1.072266 ACTTGCCACATTACTCCCCA 58.928 50.000 0.00 0.00 0.00 4.96
2014 2047 1.640670 ACTTGCCACATTACTCCCCAT 59.359 47.619 0.00 0.00 0.00 4.00
2015 2048 2.026641 CTTGCCACATTACTCCCCATG 58.973 52.381 0.00 0.00 0.00 3.66
2016 2049 0.258484 TGCCACATTACTCCCCATGG 59.742 55.000 4.14 4.14 0.00 3.66
2017 2050 0.550914 GCCACATTACTCCCCATGGA 59.449 55.000 15.22 0.00 38.75 3.41
2024 2062 1.461091 TACTCCCCATGGACGATCGC 61.461 60.000 15.22 8.04 35.03 4.58
2031 2069 1.203928 CATGGACGATCGCTCAACTC 58.796 55.000 16.60 3.62 0.00 3.01
2044 2082 0.736053 TCAACTCCGTTGGTGCAAAC 59.264 50.000 6.86 0.00 42.99 2.93
2046 2084 1.021968 AACTCCGTTGGTGCAAACTC 58.978 50.000 0.00 0.00 0.00 3.01
2072 2110 2.465860 TTTGAGCCGAAATCCGAAGA 57.534 45.000 0.00 0.00 41.76 2.87
2286 2324 2.369870 GTGCAACGCGTACAGCTAT 58.630 52.632 24.85 2.34 45.59 2.97
2418 2456 4.321378 CCGGCTTCTCTATTAGGTAAGCTC 60.321 50.000 20.54 14.01 41.72 4.09
2423 2461 7.437748 GCTTCTCTATTAGGTAAGCTCATCAA 58.562 38.462 16.95 0.00 39.51 2.57
2449 2490 7.647715 ACGTTGATGATTTGTTAACCTTTGAAG 59.352 33.333 2.48 0.00 0.00 3.02
2477 2518 3.726291 TTGGGTTTAGAAAACTGCAGC 57.274 42.857 15.27 0.00 0.00 5.25
2508 2549 3.399330 TCTCGGTTGTTGAGGAAATGTC 58.601 45.455 0.00 0.00 34.19 3.06
2521 2562 5.518847 TGAGGAAATGTCGATAAACGCTTAG 59.481 40.000 0.00 0.00 42.26 2.18
2581 2622 1.197721 GACTTGCACGACTGATTTGGG 59.802 52.381 0.00 0.00 0.00 4.12
2585 2626 0.951558 GCACGACTGATTTGGGTTGT 59.048 50.000 0.00 0.00 0.00 3.32
2614 2664 3.258123 CCGAAAATCCAACCCACTGAATT 59.742 43.478 0.00 0.00 0.00 2.17
2615 2665 4.485163 CGAAAATCCAACCCACTGAATTC 58.515 43.478 0.00 0.00 0.00 2.17
2616 2666 4.485163 GAAAATCCAACCCACTGAATTCG 58.515 43.478 0.04 0.00 0.00 3.34
2617 2667 2.128771 ATCCAACCCACTGAATTCGG 57.871 50.000 12.91 12.91 0.00 4.30
2618 2668 0.608035 TCCAACCCACTGAATTCGGC 60.608 55.000 14.40 0.00 0.00 5.54
2619 2669 1.595093 CCAACCCACTGAATTCGGCC 61.595 60.000 14.40 0.00 0.00 6.13
2620 2670 0.609131 CAACCCACTGAATTCGGCCT 60.609 55.000 14.40 0.00 0.00 5.19
2621 2671 0.988832 AACCCACTGAATTCGGCCTA 59.011 50.000 14.40 0.00 0.00 3.93
2622 2672 0.541863 ACCCACTGAATTCGGCCTAG 59.458 55.000 14.40 1.17 0.00 3.02
2623 2673 0.541863 CCCACTGAATTCGGCCTAGT 59.458 55.000 14.40 1.84 0.00 2.57
2624 2674 1.760613 CCCACTGAATTCGGCCTAGTA 59.239 52.381 14.40 0.00 0.00 1.82
2625 2675 2.169769 CCCACTGAATTCGGCCTAGTAA 59.830 50.000 14.40 0.00 0.00 2.24
2628 2678 5.280011 CCCACTGAATTCGGCCTAGTAATAT 60.280 44.000 14.40 0.00 0.00 1.28
2665 2716 1.235281 GGGTTCCTTGTCAACGAGGC 61.235 60.000 11.08 0.00 45.38 4.70
2687 2738 2.112297 GACCCCAGCCGTGTTGAA 59.888 61.111 0.00 0.00 0.00 2.69
2713 2767 9.790389 AAACAATTCTAAATACGAACAAACACA 57.210 25.926 0.00 0.00 0.00 3.72
2714 2768 9.790389 AACAATTCTAAATACGAACAAACACAA 57.210 25.926 0.00 0.00 0.00 3.33
2716 2770 8.901748 CAATTCTAAATACGAACAAACACAAGG 58.098 33.333 0.00 0.00 0.00 3.61
2718 2772 6.289834 TCTAAATACGAACAAACACAAGGGA 58.710 36.000 0.00 0.00 0.00 4.20
2719 2773 5.838531 AAATACGAACAAACACAAGGGAA 57.161 34.783 0.00 0.00 0.00 3.97
2720 2774 6.399639 AAATACGAACAAACACAAGGGAAT 57.600 33.333 0.00 0.00 0.00 3.01
2721 2775 3.982576 ACGAACAAACACAAGGGAATC 57.017 42.857 0.00 0.00 0.00 2.52
2722 2776 3.551846 ACGAACAAACACAAGGGAATCT 58.448 40.909 0.00 0.00 0.00 2.40
2723 2777 3.951680 ACGAACAAACACAAGGGAATCTT 59.048 39.130 0.00 0.00 35.79 2.40
2724 2778 4.401202 ACGAACAAACACAAGGGAATCTTT 59.599 37.500 0.00 0.00 32.41 2.52
2725 2779 4.739716 CGAACAAACACAAGGGAATCTTTG 59.260 41.667 0.00 0.00 32.41 2.77
2726 2780 4.670896 ACAAACACAAGGGAATCTTTGG 57.329 40.909 0.00 0.00 32.41 3.28
2727 2781 3.387699 ACAAACACAAGGGAATCTTTGGG 59.612 43.478 0.00 0.20 32.41 4.12
2728 2782 3.328535 AACACAAGGGAATCTTTGGGT 57.671 42.857 1.28 1.28 32.41 4.51
2729 2783 3.328535 ACACAAGGGAATCTTTGGGTT 57.671 42.857 1.28 0.00 32.41 4.11
2730 2784 3.653164 ACACAAGGGAATCTTTGGGTTT 58.347 40.909 1.28 0.00 32.41 3.27
2731 2785 4.810345 ACACAAGGGAATCTTTGGGTTTA 58.190 39.130 1.28 0.00 32.41 2.01
2732 2786 4.832823 ACACAAGGGAATCTTTGGGTTTAG 59.167 41.667 1.28 0.00 32.41 1.85
2733 2787 4.220602 CACAAGGGAATCTTTGGGTTTAGG 59.779 45.833 3.87 0.00 32.41 2.69
2734 2788 4.107311 ACAAGGGAATCTTTGGGTTTAGGA 59.893 41.667 3.87 0.00 32.41 2.94
2735 2789 4.592997 AGGGAATCTTTGGGTTTAGGAG 57.407 45.455 0.00 0.00 0.00 3.69
2736 2790 3.269643 AGGGAATCTTTGGGTTTAGGAGG 59.730 47.826 0.00 0.00 0.00 4.30
2737 2791 3.011369 GGGAATCTTTGGGTTTAGGAGGT 59.989 47.826 0.00 0.00 0.00 3.85
2738 2792 4.228895 GGGAATCTTTGGGTTTAGGAGGTA 59.771 45.833 0.00 0.00 0.00 3.08
2739 2793 5.437946 GGAATCTTTGGGTTTAGGAGGTAG 58.562 45.833 0.00 0.00 0.00 3.18
2740 2794 3.994931 TCTTTGGGTTTAGGAGGTAGC 57.005 47.619 0.00 0.00 0.00 3.58
2741 2795 2.574824 TCTTTGGGTTTAGGAGGTAGCC 59.425 50.000 0.00 0.00 0.00 3.93
2742 2796 2.047769 TTGGGTTTAGGAGGTAGCCA 57.952 50.000 0.00 0.00 37.64 4.75
2743 2797 1.580059 TGGGTTTAGGAGGTAGCCAG 58.420 55.000 0.00 0.00 34.73 4.85
2744 2798 1.203389 TGGGTTTAGGAGGTAGCCAGT 60.203 52.381 0.00 0.00 34.73 4.00
2745 2799 1.209747 GGGTTTAGGAGGTAGCCAGTG 59.790 57.143 0.00 0.00 0.00 3.66
2746 2800 1.907255 GGTTTAGGAGGTAGCCAGTGT 59.093 52.381 0.00 0.00 0.00 3.55
2747 2801 3.102204 GGTTTAGGAGGTAGCCAGTGTA 58.898 50.000 0.00 0.00 0.00 2.90
2793 2847 1.600916 GCACAGTGGTTGGGGTCTC 60.601 63.158 1.84 0.00 0.00 3.36
2794 2848 1.073199 CACAGTGGTTGGGGTCTCC 59.927 63.158 0.00 0.00 0.00 3.71
2795 2849 1.073706 ACAGTGGTTGGGGTCTCCT 60.074 57.895 0.00 0.00 36.20 3.69
2796 2850 0.697854 ACAGTGGTTGGGGTCTCCTT 60.698 55.000 0.00 0.00 36.20 3.36
2797 2851 0.250901 CAGTGGTTGGGGTCTCCTTG 60.251 60.000 0.00 0.00 36.20 3.61
2798 2852 0.401395 AGTGGTTGGGGTCTCCTTGA 60.401 55.000 0.00 0.00 36.20 3.02
2838 2892 5.411669 GTCAGTCCACGGAATAAAATTCACT 59.588 40.000 2.36 0.00 0.00 3.41
2853 2907 3.313012 TTCACTGGAACATGTAGTCGG 57.687 47.619 0.00 0.00 38.20 4.79
2882 2936 1.363807 GTTGCCAACTTGGACCAGC 59.636 57.895 12.37 0.00 40.96 4.85
2966 3022 4.022329 CCCCCATTTCGTATGCTTTTATCC 60.022 45.833 0.00 0.00 0.00 2.59
2972 3028 4.310357 TCGTATGCTTTTATCCGCTGTA 57.690 40.909 0.00 0.00 0.00 2.74
2984 3040 1.200716 TCCGCTGTAGTTGTTCGGTAG 59.799 52.381 0.00 0.00 40.81 3.18
3087 3155 5.464168 ACATATGCAAGCTGACTTTGTTTC 58.536 37.500 1.58 0.00 32.29 2.78
3114 3182 6.899114 TCTTTCAGTCGGCTTAAAAGATTTC 58.101 36.000 16.52 0.00 32.57 2.17
3151 3219 6.348132 CGTATGCTGAATGTTTTCACCAACTA 60.348 38.462 0.00 0.00 36.94 2.24
3165 3233 5.069318 TCACCAACTAGCACATTTTCATGA 58.931 37.500 0.00 0.00 34.11 3.07
3203 3271 6.978674 TGGTCGGATCTTTCATTATCTAGT 57.021 37.500 0.00 0.00 0.00 2.57
3263 3645 6.437094 AGTTAGGTTCTCTCGCGAATAATAC 58.563 40.000 11.33 4.91 0.00 1.89
3312 3694 7.014711 TGGAACATGTGAAATAAACCAAGCTTA 59.985 33.333 0.00 0.00 0.00 3.09
3313 3695 7.870445 GGAACATGTGAAATAAACCAAGCTTAA 59.130 33.333 0.00 0.00 0.00 1.85
3322 3707 8.601845 AAATAAACCAAGCTTAATTTGACCAC 57.398 30.769 14.43 0.00 0.00 4.16
3391 3776 0.386352 CTGAATGCACGTGTGGCTTG 60.386 55.000 18.38 0.47 0.00 4.01
3406 3791 1.715585 CTTGGCCAGATTACACGCG 59.284 57.895 5.11 3.53 0.00 6.01
3408 3793 2.817834 GGCCAGATTACACGCGCA 60.818 61.111 5.73 0.00 0.00 6.09
3473 3862 2.959030 TCTTCTGATGTGATAGGGTCGG 59.041 50.000 0.00 0.00 0.00 4.79
3482 3871 4.480115 TGTGATAGGGTCGGTTCATAGAT 58.520 43.478 0.00 0.00 0.00 1.98
3483 3872 5.637127 TGTGATAGGGTCGGTTCATAGATA 58.363 41.667 0.00 0.00 0.00 1.98
3484 3873 5.710567 TGTGATAGGGTCGGTTCATAGATAG 59.289 44.000 0.00 0.00 0.00 2.08
3533 3922 2.890311 TGCAGACGAAAATGACCCATTT 59.110 40.909 0.00 0.00 44.62 2.32
3558 3947 3.018856 TGACAATTGGACATGGCTGATC 58.981 45.455 10.83 0.00 0.00 2.92
3616 4019 3.489785 GGACAAGGATTATCGTTAGCGTG 59.510 47.826 0.00 0.00 39.49 5.34
3738 4142 5.579511 GCAGGCAAATTTCTTCTAGTACGTA 59.420 40.000 0.00 0.00 0.00 3.57
3739 4143 6.237861 GCAGGCAAATTTCTTCTAGTACGTAG 60.238 42.308 0.00 0.00 0.00 3.51
3763 4167 4.469657 ACAAGACAGGCTAATTTGGTTCA 58.530 39.130 8.34 0.00 0.00 3.18
3765 4169 5.047802 ACAAGACAGGCTAATTTGGTTCATG 60.048 40.000 8.34 0.00 0.00 3.07
3767 4171 5.815581 AGACAGGCTAATTTGGTTCATGTA 58.184 37.500 0.00 0.00 0.00 2.29
3811 4215 2.332654 CGTGGCGGGAAAAAGAGGG 61.333 63.158 0.00 0.00 0.00 4.30
3862 4266 1.202222 CGATGAAAGCCAAGCATGACC 60.202 52.381 0.00 0.00 0.00 4.02
4252 4694 6.068473 TGCATTGCATCTATCTCATTTGTC 57.932 37.500 7.38 0.00 31.71 3.18
4291 4733 0.321564 TTGGGCCAACTCTGACGATG 60.322 55.000 16.66 0.00 0.00 3.84
4292 4734 1.296715 GGGCCAACTCTGACGATGT 59.703 57.895 4.39 0.00 0.00 3.06
4293 4735 1.021390 GGGCCAACTCTGACGATGTG 61.021 60.000 4.39 0.00 0.00 3.21
4306 4748 1.743995 GATGTGGTGGTACGGTGGC 60.744 63.158 0.00 0.00 0.00 5.01
4573 5024 2.095567 CACTGTGAGTACCATTGCTTGC 60.096 50.000 0.32 0.00 0.00 4.01
4574 5025 2.153645 CTGTGAGTACCATTGCTTGCA 58.846 47.619 0.00 0.00 0.00 4.08
4575 5026 2.153645 TGTGAGTACCATTGCTTGCAG 58.846 47.619 0.00 0.00 0.00 4.41
4576 5027 1.135575 GTGAGTACCATTGCTTGCAGC 60.136 52.381 0.00 1.70 42.82 5.25
4586 5037 0.828762 TGCTTGCAGCCAGAAACCAT 60.829 50.000 0.00 0.00 41.51 3.55
4605 5059 4.823157 CCATCAATGGCAGAATGTTGAAA 58.177 39.130 4.73 0.00 41.75 2.69
4606 5060 4.628333 CCATCAATGGCAGAATGTTGAAAC 59.372 41.667 4.73 0.00 41.75 2.78
4622 5077 6.313252 TGTTGAAACTTTGCTGAAATTTTGC 58.687 32.000 9.33 9.33 27.39 3.68
4876 5339 3.459232 TGAGACAGAGTGACCTTTGTG 57.541 47.619 0.00 0.00 36.25 3.33
4969 5432 3.066190 TTGATCCGGGCGTCGAGT 61.066 61.111 0.00 0.00 42.43 4.18
5233 5696 1.477295 CTTCAAGGGAGGTAGTCGTCC 59.523 57.143 0.00 0.00 44.92 4.79
5383 5846 0.669077 GTCTAGTCGATCGGCATGGT 59.331 55.000 23.45 3.12 0.00 3.55
5473 5946 2.344741 GTCGAGGTAAATTCACAGCGAC 59.655 50.000 9.06 9.06 38.44 5.19
5489 5963 1.790481 GCGACGTGCTTAAAAGGCATC 60.790 52.381 0.00 0.00 41.86 3.91
5533 6008 8.369218 GCTATATGCTGCCATGTTTTAATTTT 57.631 30.769 0.00 0.00 38.95 1.82
5534 6009 8.490355 GCTATATGCTGCCATGTTTTAATTTTC 58.510 33.333 0.00 0.00 38.95 2.29
5535 6010 9.531942 CTATATGCTGCCATGTTTTAATTTTCA 57.468 29.630 0.00 0.00 32.85 2.69
5536 6011 8.789825 ATATGCTGCCATGTTTTAATTTTCAA 57.210 26.923 0.00 0.00 32.85 2.69
5537 6012 6.932356 TGCTGCCATGTTTTAATTTTCAAA 57.068 29.167 0.00 0.00 0.00 2.69
5582 6057 1.109323 GGTGGGCCAATATCCAGTGC 61.109 60.000 8.40 0.00 33.13 4.40
5585 6060 1.538666 GGCCAATATCCAGTGCCCT 59.461 57.895 0.00 0.00 36.07 5.19
5589 6064 1.202855 CCAATATCCAGTGCCCTGAGG 60.203 57.143 0.00 0.00 41.50 3.86
5590 6065 1.770658 CAATATCCAGTGCCCTGAGGA 59.229 52.381 0.00 0.00 41.50 3.71
5592 6067 1.204146 TATCCAGTGCCCTGAGGAAC 58.796 55.000 0.00 0.00 43.07 3.62
5607 6082 2.843081 AGGAACCCCCTAGGACTTAAC 58.157 52.381 11.48 0.00 45.48 2.01
5608 6083 2.114871 AGGAACCCCCTAGGACTTAACA 59.885 50.000 11.48 0.00 45.48 2.41
5609 6084 2.238144 GGAACCCCCTAGGACTTAACAC 59.762 54.545 11.48 0.00 39.89 3.32
5610 6085 1.962558 ACCCCCTAGGACTTAACACC 58.037 55.000 11.48 0.00 39.89 4.16
5611 6086 0.828677 CCCCCTAGGACTTAACACCG 59.171 60.000 11.48 0.00 38.24 4.94
5612 6087 1.620524 CCCCCTAGGACTTAACACCGA 60.621 57.143 11.48 0.00 38.24 4.69
5613 6088 1.479730 CCCCTAGGACTTAACACCGAC 59.520 57.143 11.48 0.00 33.47 4.79
5614 6089 2.454538 CCCTAGGACTTAACACCGACT 58.545 52.381 11.48 0.00 0.00 4.18
5615 6090 3.624777 CCCTAGGACTTAACACCGACTA 58.375 50.000 11.48 0.00 0.00 2.59
5616 6091 4.019174 CCCTAGGACTTAACACCGACTAA 58.981 47.826 11.48 0.00 0.00 2.24
5617 6092 4.097589 CCCTAGGACTTAACACCGACTAAG 59.902 50.000 11.48 0.00 0.00 2.18
5618 6093 4.704057 CCTAGGACTTAACACCGACTAAGT 59.296 45.833 1.05 0.00 40.28 2.24
5619 6094 5.882557 CCTAGGACTTAACACCGACTAAGTA 59.117 44.000 1.05 0.00 38.24 2.24
5620 6095 6.375455 CCTAGGACTTAACACCGACTAAGTAA 59.625 42.308 1.05 0.00 38.24 2.24
5621 6096 6.847421 AGGACTTAACACCGACTAAGTAAT 57.153 37.500 0.00 0.00 38.24 1.89
5622 6097 7.237209 AGGACTTAACACCGACTAAGTAATT 57.763 36.000 0.00 0.00 38.24 1.40
5623 6098 7.674120 AGGACTTAACACCGACTAAGTAATTT 58.326 34.615 0.00 0.00 38.24 1.82
5624 6099 8.152898 AGGACTTAACACCGACTAAGTAATTTT 58.847 33.333 0.00 0.00 38.24 1.82
5625 6100 9.423061 GGACTTAACACCGACTAAGTAATTTTA 57.577 33.333 0.00 0.00 38.24 1.52
5627 6102 9.208022 ACTTAACACCGACTAAGTAATTTTACC 57.792 33.333 0.00 0.00 36.75 2.85
5628 6103 6.710692 AACACCGACTAAGTAATTTTACCG 57.289 37.500 0.00 0.00 34.19 4.02
5629 6104 5.170748 ACACCGACTAAGTAATTTTACCGG 58.829 41.667 0.00 0.00 38.53 5.28
5630 6105 5.047377 ACACCGACTAAGTAATTTTACCGGA 60.047 40.000 9.46 0.00 37.12 5.14
5631 6106 5.517770 CACCGACTAAGTAATTTTACCGGAG 59.482 44.000 9.46 8.92 37.12 4.63
5632 6107 4.505556 CCGACTAAGTAATTTTACCGGAGC 59.494 45.833 9.46 0.00 36.33 4.70
5633 6108 4.505556 CGACTAAGTAATTTTACCGGAGCC 59.494 45.833 9.46 0.00 34.19 4.70
5634 6109 4.436332 ACTAAGTAATTTTACCGGAGCCG 58.564 43.478 9.46 1.06 34.19 5.52
5650 6125 3.741029 CCGGGATATATCGGTGCTG 57.259 57.895 6.64 0.00 41.23 4.41
5651 6126 0.175760 CCGGGATATATCGGTGCTGG 59.824 60.000 6.64 3.79 41.23 4.85
5652 6127 1.182667 CGGGATATATCGGTGCTGGA 58.817 55.000 6.64 0.00 0.00 3.86
5653 6128 1.757118 CGGGATATATCGGTGCTGGAT 59.243 52.381 6.64 0.00 0.00 3.41
5654 6129 2.223829 CGGGATATATCGGTGCTGGATC 60.224 54.545 6.64 0.00 0.00 3.36
5655 6130 2.103263 GGGATATATCGGTGCTGGATCC 59.897 54.545 4.20 4.20 0.00 3.36
5656 6131 2.766263 GGATATATCGGTGCTGGATCCA 59.234 50.000 15.27 15.27 33.12 3.41
5657 6132 3.430929 GGATATATCGGTGCTGGATCCAC 60.431 52.174 11.44 8.83 33.12 4.02
5661 6136 3.090765 GGTGCTGGATCCACCCTT 58.909 61.111 11.44 0.00 45.51 3.95
5662 6137 1.077429 GGTGCTGGATCCACCCTTC 60.077 63.158 11.44 0.00 45.51 3.46
5663 6138 1.450312 GTGCTGGATCCACCCTTCG 60.450 63.158 11.44 0.49 38.00 3.79
5664 6139 1.918293 TGCTGGATCCACCCTTCGT 60.918 57.895 11.44 0.00 38.00 3.85
5665 6140 1.153349 GCTGGATCCACCCTTCGTC 60.153 63.158 11.44 0.00 38.00 4.20
5666 6141 1.522569 CTGGATCCACCCTTCGTCC 59.477 63.158 11.44 0.00 38.00 4.79
5667 6142 1.229368 TGGATCCACCCTTCGTCCA 60.229 57.895 11.44 0.00 36.66 4.02
5668 6143 0.620410 TGGATCCACCCTTCGTCCAT 60.620 55.000 11.44 0.00 34.23 3.41
5669 6144 0.546598 GGATCCACCCTTCGTCCATT 59.453 55.000 6.95 0.00 0.00 3.16
5670 6145 1.064685 GGATCCACCCTTCGTCCATTT 60.065 52.381 6.95 0.00 0.00 2.32
5671 6146 2.289565 GATCCACCCTTCGTCCATTTC 58.710 52.381 0.00 0.00 0.00 2.17
5672 6147 0.036765 TCCACCCTTCGTCCATTTCG 60.037 55.000 0.00 0.00 0.00 3.46
5673 6148 1.644786 CCACCCTTCGTCCATTTCGC 61.645 60.000 0.00 0.00 0.00 4.70
5674 6149 1.376812 ACCCTTCGTCCATTTCGCC 60.377 57.895 0.00 0.00 0.00 5.54
5675 6150 1.376683 CCCTTCGTCCATTTCGCCA 60.377 57.895 0.00 0.00 0.00 5.69
5676 6151 0.958382 CCCTTCGTCCATTTCGCCAA 60.958 55.000 0.00 0.00 0.00 4.52
5677 6152 0.447801 CCTTCGTCCATTTCGCCAAG 59.552 55.000 0.00 0.00 0.00 3.61
5678 6153 1.438651 CTTCGTCCATTTCGCCAAGA 58.561 50.000 0.00 0.00 0.00 3.02
5679 6154 2.009774 CTTCGTCCATTTCGCCAAGAT 58.990 47.619 0.00 0.00 0.00 2.40
5680 6155 1.651987 TCGTCCATTTCGCCAAGATC 58.348 50.000 0.00 0.00 0.00 2.75
5681 6156 0.657840 CGTCCATTTCGCCAAGATCC 59.342 55.000 0.00 0.00 0.00 3.36
5682 6157 0.657840 GTCCATTTCGCCAAGATCCG 59.342 55.000 0.00 0.00 0.00 4.18
5683 6158 1.095228 TCCATTTCGCCAAGATCCGC 61.095 55.000 0.00 0.00 0.00 5.54
5696 6171 2.855728 GATCCGCGGCAGCTTTTGTG 62.856 60.000 23.51 0.00 42.32 3.33
5763 6243 1.376037 CTCCCCACGCAAGACCTTC 60.376 63.158 0.00 0.00 43.62 3.46
5872 6355 5.425217 AGGGAAACAAGACCTTTGAAACAAT 59.575 36.000 0.00 0.00 0.00 2.71
6206 6706 7.284261 TCAGAAAACACATTACACTCATTTCCA 59.716 33.333 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.787001 GGGCCGCAGAAGTAGCCT 61.787 66.667 0.00 0.00 45.07 4.58
2 3 2.182842 CATGGGCCGCAGAAGTAGC 61.183 63.158 0.00 0.00 0.00 3.58
3 4 1.524621 CCATGGGCCGCAGAAGTAG 60.525 63.158 2.85 0.00 0.00 2.57
4 5 1.992834 TCCATGGGCCGCAGAAGTA 60.993 57.895 13.02 0.00 0.00 2.24
5 6 3.329889 TCCATGGGCCGCAGAAGT 61.330 61.111 13.02 0.00 0.00 3.01
6 7 2.825836 GTCCATGGGCCGCAGAAG 60.826 66.667 13.02 0.00 0.00 2.85
8 9 3.410628 ATGTCCATGGGCCGCAGA 61.411 61.111 15.27 0.00 0.00 4.26
9 10 2.607411 TACATGTCCATGGGCCGCAG 62.607 60.000 15.27 3.30 42.91 5.18
45 46 0.248661 CTCTAGTGATGACGCACCGG 60.249 60.000 0.00 0.00 39.59 5.28
52 53 3.386078 TCTCAATGGCCTCTAGTGATGAC 59.614 47.826 3.32 0.00 0.00 3.06
54 55 4.412796 TTCTCAATGGCCTCTAGTGATG 57.587 45.455 3.32 0.00 0.00 3.07
55 56 4.141528 CCTTTCTCAATGGCCTCTAGTGAT 60.142 45.833 3.32 0.00 0.00 3.06
57 58 3.539604 CCTTTCTCAATGGCCTCTAGTG 58.460 50.000 3.32 0.00 0.00 2.74
60 61 2.717639 GCCTTTCTCAATGGCCTCTA 57.282 50.000 3.32 0.00 43.79 2.43
66 67 1.202348 GTTTCCGGCCTTTCTCAATGG 59.798 52.381 0.00 0.00 0.00 3.16
67 68 1.885887 TGTTTCCGGCCTTTCTCAATG 59.114 47.619 0.00 0.00 0.00 2.82
68 69 1.886542 GTGTTTCCGGCCTTTCTCAAT 59.113 47.619 0.00 0.00 0.00 2.57
69 70 1.314730 GTGTTTCCGGCCTTTCTCAA 58.685 50.000 0.00 0.00 0.00 3.02
70 71 0.536460 GGTGTTTCCGGCCTTTCTCA 60.536 55.000 0.00 0.00 0.00 3.27
71 72 0.536460 TGGTGTTTCCGGCCTTTCTC 60.536 55.000 0.00 0.00 39.52 2.87
75 76 2.203437 GGTGGTGTTTCCGGCCTT 60.203 61.111 0.00 0.00 39.52 4.35
76 77 4.636435 CGGTGGTGTTTCCGGCCT 62.636 66.667 0.00 0.00 42.61 5.19
81 82 1.449726 GGGACAACGGTGGTGTTTCC 61.450 60.000 4.97 1.20 32.75 3.13
82 83 0.464916 AGGGACAACGGTGGTGTTTC 60.465 55.000 4.97 0.00 0.00 2.78
90 91 2.654877 CTGCGTAGGGACAACGGT 59.345 61.111 0.00 0.00 40.64 4.83
99 100 1.153745 GAGAGTGTGGCTGCGTAGG 60.154 63.158 1.76 0.00 0.00 3.18
103 104 0.882042 AAGTTGAGAGTGTGGCTGCG 60.882 55.000 0.00 0.00 0.00 5.18
119 120 4.394712 CCGGCGGCTCCTTGAAGT 62.395 66.667 15.42 0.00 0.00 3.01
120 121 4.082523 TCCGGCGGCTCCTTGAAG 62.083 66.667 23.83 0.00 0.00 3.02
124 125 3.541713 GATCTCCGGCGGCTCCTT 61.542 66.667 23.83 3.48 0.00 3.36
130 131 4.592192 ACATGCGATCTCCGGCGG 62.592 66.667 22.51 22.51 39.04 6.13
131 132 2.586079 AACATGCGATCTCCGGCG 60.586 61.111 0.00 0.00 39.04 6.46
151 159 0.797249 CACTCCGTTAGCCTTCGACG 60.797 60.000 0.00 0.00 36.61 5.12
153 161 1.888018 CCACTCCGTTAGCCTTCGA 59.112 57.895 0.00 0.00 0.00 3.71
162 170 3.692406 GGAGGTCGCCACTCCGTT 61.692 66.667 4.50 0.00 44.50 4.44
199 207 4.233789 GAGCGAAGTCTCAATAGCATAGG 58.766 47.826 0.00 0.00 32.47 2.57
205 213 3.435105 AGCTGAGCGAAGTCTCAATAG 57.565 47.619 0.00 0.00 39.37 1.73
207 215 2.159170 GGTAGCTGAGCGAAGTCTCAAT 60.159 50.000 0.00 0.00 39.37 2.57
221 229 1.927895 CTGCTAGAAACCGGTAGCTG 58.072 55.000 23.80 20.11 41.94 4.24
222 230 0.175989 GCTGCTAGAAACCGGTAGCT 59.824 55.000 23.80 18.56 41.94 3.32
228 236 0.526524 CTCCTCGCTGCTAGAAACCG 60.527 60.000 2.33 0.00 0.00 4.44
238 246 0.898320 TCTCTTTTCCCTCCTCGCTG 59.102 55.000 0.00 0.00 0.00 5.18
242 250 4.459330 CCATTCATCTCTTTTCCCTCCTC 58.541 47.826 0.00 0.00 0.00 3.71
245 253 4.510167 TCCCATTCATCTCTTTTCCCTC 57.490 45.455 0.00 0.00 0.00 4.30
249 257 6.653989 TCCTACTTCCCATTCATCTCTTTTC 58.346 40.000 0.00 0.00 0.00 2.29
271 279 4.851179 CCTAAACCCGCCGCCTCC 62.851 72.222 0.00 0.00 0.00 4.30
278 286 1.034356 AACACAAACCCTAAACCCGC 58.966 50.000 0.00 0.00 0.00 6.13
282 290 3.491964 GCCTTCCAACACAAACCCTAAAC 60.492 47.826 0.00 0.00 0.00 2.01
308 316 0.252467 AGAGAAGACACCTCCCCCTG 60.252 60.000 0.00 0.00 0.00 4.45
340 348 6.210584 GGGAAATGTTTTCTGTCCATAAAGGA 59.789 38.462 0.52 0.00 46.75 3.36
341 349 6.398095 GGGAAATGTTTTCTGTCCATAAAGG 58.602 40.000 0.52 0.00 39.47 3.11
342 350 6.398095 GGGGAAATGTTTTCTGTCCATAAAG 58.602 40.000 0.52 0.00 0.00 1.85
343 351 5.247337 GGGGGAAATGTTTTCTGTCCATAAA 59.753 40.000 0.52 0.00 0.00 1.40
346 354 3.173151 GGGGGAAATGTTTTCTGTCCAT 58.827 45.455 0.52 0.00 0.00 3.41
347 355 2.604139 GGGGGAAATGTTTTCTGTCCA 58.396 47.619 0.52 0.00 0.00 4.02
408 416 9.781834 TGTTTGTTAAACACTTGAACTTCATAG 57.218 29.630 3.20 0.00 45.79 2.23
430 438 7.065803 CGTGGAGTAGGTGATGATTAATTGTTT 59.934 37.037 0.00 0.00 0.00 2.83
461 469 8.870075 ATCAGCTTTTTCTACTTAGGACAAAT 57.130 30.769 0.00 0.00 0.00 2.32
462 470 8.567948 CAATCAGCTTTTTCTACTTAGGACAAA 58.432 33.333 0.00 0.00 0.00 2.83
463 471 7.936847 TCAATCAGCTTTTTCTACTTAGGACAA 59.063 33.333 0.00 0.00 0.00 3.18
464 472 7.387948 GTCAATCAGCTTTTTCTACTTAGGACA 59.612 37.037 0.00 0.00 0.00 4.02
465 473 7.412020 CGTCAATCAGCTTTTTCTACTTAGGAC 60.412 40.741 0.00 0.00 0.00 3.85
466 474 6.590292 CGTCAATCAGCTTTTTCTACTTAGGA 59.410 38.462 0.00 0.00 0.00 2.94
467 475 6.590292 TCGTCAATCAGCTTTTTCTACTTAGG 59.410 38.462 0.00 0.00 0.00 2.69
468 476 7.582435 TCGTCAATCAGCTTTTTCTACTTAG 57.418 36.000 0.00 0.00 0.00 2.18
469 477 7.817478 TCATCGTCAATCAGCTTTTTCTACTTA 59.183 33.333 0.00 0.00 0.00 2.24
470 478 6.650807 TCATCGTCAATCAGCTTTTTCTACTT 59.349 34.615 0.00 0.00 0.00 2.24
471 479 6.166279 TCATCGTCAATCAGCTTTTTCTACT 58.834 36.000 0.00 0.00 0.00 2.57
472 480 6.408858 TCATCGTCAATCAGCTTTTTCTAC 57.591 37.500 0.00 0.00 0.00 2.59
473 481 8.768019 CATATCATCGTCAATCAGCTTTTTCTA 58.232 33.333 0.00 0.00 0.00 2.10
474 482 7.255035 CCATATCATCGTCAATCAGCTTTTTCT 60.255 37.037 0.00 0.00 0.00 2.52
475 483 6.854892 CCATATCATCGTCAATCAGCTTTTTC 59.145 38.462 0.00 0.00 0.00 2.29
476 484 6.732154 CCATATCATCGTCAATCAGCTTTTT 58.268 36.000 0.00 0.00 0.00 1.94
477 485 5.278169 GCCATATCATCGTCAATCAGCTTTT 60.278 40.000 0.00 0.00 0.00 2.27
478 486 4.214971 GCCATATCATCGTCAATCAGCTTT 59.785 41.667 0.00 0.00 0.00 3.51
479 487 3.750130 GCCATATCATCGTCAATCAGCTT 59.250 43.478 0.00 0.00 0.00 3.74
480 488 3.244318 TGCCATATCATCGTCAATCAGCT 60.244 43.478 0.00 0.00 0.00 4.24
497 505 1.237285 GCGTGTCCAAAGAGTGCCAT 61.237 55.000 0.00 0.00 0.00 4.40
521 529 2.061028 GGCAAAATGGAGTGCTTTTCG 58.939 47.619 0.00 0.00 40.70 3.46
524 534 2.633967 TGATGGCAAAATGGAGTGCTTT 59.366 40.909 0.00 0.00 40.70 3.51
539 549 3.879295 TGCAGCTCTTAACTAATGATGGC 59.121 43.478 0.00 0.00 0.00 4.40
626 640 6.090358 ACAAAACTCGTTAGTCGTTGATATGG 59.910 38.462 8.20 0.00 40.80 2.74
627 641 7.045725 ACAAAACTCGTTAGTCGTTGATATG 57.954 36.000 8.20 0.00 40.80 1.78
628 642 7.507304 CAACAAAACTCGTTAGTCGTTGATAT 58.493 34.615 0.00 0.00 40.80 1.63
635 649 3.531982 CAGCAACAAAACTCGTTAGTCG 58.468 45.455 0.00 0.00 33.75 4.18
861 880 4.482386 GCGTGGTTATATATCAAGAGCGA 58.518 43.478 0.00 0.00 0.00 4.93
865 884 3.581755 GGCGCGTGGTTATATATCAAGA 58.418 45.455 8.43 0.00 0.00 3.02
908 931 2.351726 GGATAAAACAGGTGCTGCTACG 59.648 50.000 0.00 0.00 34.37 3.51
909 932 3.127030 GTGGATAAAACAGGTGCTGCTAC 59.873 47.826 0.00 0.00 34.37 3.58
910 933 3.343617 GTGGATAAAACAGGTGCTGCTA 58.656 45.455 0.00 0.00 34.37 3.49
911 934 2.162681 GTGGATAAAACAGGTGCTGCT 58.837 47.619 0.00 0.00 34.37 4.24
912 935 1.202348 GGTGGATAAAACAGGTGCTGC 59.798 52.381 0.00 0.00 34.37 5.25
913 936 2.228822 GTGGTGGATAAAACAGGTGCTG 59.771 50.000 0.00 0.00 37.52 4.41
914 937 2.514803 GTGGTGGATAAAACAGGTGCT 58.485 47.619 0.00 0.00 0.00 4.40
915 938 1.199097 CGTGGTGGATAAAACAGGTGC 59.801 52.381 0.00 0.00 0.00 5.01
918 941 2.081462 GGTCGTGGTGGATAAAACAGG 58.919 52.381 0.00 0.00 0.00 4.00
919 942 3.000727 GAGGTCGTGGTGGATAAAACAG 58.999 50.000 0.00 0.00 0.00 3.16
920 943 2.635915 AGAGGTCGTGGTGGATAAAACA 59.364 45.455 0.00 0.00 0.00 2.83
921 944 3.329929 AGAGGTCGTGGTGGATAAAAC 57.670 47.619 0.00 0.00 0.00 2.43
922 945 3.581332 AGAAGAGGTCGTGGTGGATAAAA 59.419 43.478 0.00 0.00 0.00 1.52
932 955 0.677098 TCGGAGGAGAAGAGGTCGTG 60.677 60.000 0.00 0.00 0.00 4.35
947 970 1.330655 GGCTCTCTTGTGGGATCGGA 61.331 60.000 0.00 0.00 0.00 4.55
952 975 2.650116 GCTCGGCTCTCTTGTGGGA 61.650 63.158 0.00 0.00 0.00 4.37
1113 1143 1.294659 CGTTGGCTGACAGGAGCTTC 61.295 60.000 4.26 0.00 39.11 3.86
1437 1467 2.047844 TCGAAGCTCTGCCACAGC 60.048 61.111 0.00 0.00 40.48 4.40
1572 1602 2.281484 TGCCCCAGCGTGAAGTTC 60.281 61.111 0.00 0.00 44.31 3.01
1633 1663 2.738521 CACGTCCTTGCCGTCCTG 60.739 66.667 0.00 0.00 36.17 3.86
1891 1924 4.489771 GTAGGCCTGGCACGGCAT 62.490 66.667 22.05 20.12 46.61 4.40
1974 2007 4.130118 AGTTTCTACATGATCGGAATGCC 58.870 43.478 0.00 0.00 0.00 4.40
1983 2016 6.886459 AGTAATGTGGCAAGTTTCTACATGAT 59.114 34.615 5.34 0.00 32.75 2.45
1989 2022 4.566907 GGGGAGTAATGTGGCAAGTTTCTA 60.567 45.833 0.00 0.00 0.00 2.10
1996 2029 1.341877 CCATGGGGAGTAATGTGGCAA 60.342 52.381 2.85 0.00 35.59 4.52
2000 2033 1.484653 TCGTCCATGGGGAGTAATGTG 59.515 52.381 13.02 0.00 46.12 3.21
2001 2034 1.874129 TCGTCCATGGGGAGTAATGT 58.126 50.000 13.02 0.00 46.12 2.71
2013 2046 0.103208 GGAGTTGAGCGATCGTCCAT 59.897 55.000 17.81 0.17 0.00 3.41
2014 2047 1.511305 GGAGTTGAGCGATCGTCCA 59.489 57.895 17.81 11.91 0.00 4.02
2015 2048 1.586564 CGGAGTTGAGCGATCGTCC 60.587 63.158 17.81 13.11 0.00 4.79
2016 2049 1.136984 ACGGAGTTGAGCGATCGTC 59.863 57.895 17.81 13.09 37.78 4.20
2017 2050 3.275088 ACGGAGTTGAGCGATCGT 58.725 55.556 17.81 3.24 37.78 3.73
2031 2069 2.051345 GCGAGTTTGCACCAACGG 60.051 61.111 0.00 0.00 34.15 4.44
2044 2082 1.227999 TTCGGCTCAAAACCTGCGAG 61.228 55.000 0.00 0.00 0.00 5.03
2046 2084 0.240945 ATTTCGGCTCAAAACCTGCG 59.759 50.000 0.00 0.00 0.00 5.18
2072 2110 1.535687 ACCCCGTTGCTGTACTCCT 60.536 57.895 0.00 0.00 0.00 3.69
2127 2165 2.091112 CACGTTCCTCTCGCTGCAG 61.091 63.158 10.11 10.11 0.00 4.41
2423 2461 7.033530 TCAAAGGTTAACAAATCATCAACGT 57.966 32.000 8.10 0.00 0.00 3.99
2477 2518 4.628074 TCAACAACCGAGAAGTTTCCTAG 58.372 43.478 0.00 0.00 0.00 3.02
2508 2549 7.681125 ATTTCTACAGTCTAAGCGTTTATCG 57.319 36.000 0.00 0.00 43.12 2.92
2521 2562 8.921670 ACAACAAAAACAACAATTTCTACAGTC 58.078 29.630 0.00 0.00 0.00 3.51
2581 2622 4.571372 TGGATTTTCGGGTTGTAACAAC 57.429 40.909 0.00 0.00 0.00 3.32
2585 2626 2.892215 GGGTTGGATTTTCGGGTTGTAA 59.108 45.455 0.00 0.00 0.00 2.41
2594 2635 4.485163 CGAATTCAGTGGGTTGGATTTTC 58.515 43.478 6.22 0.00 0.00 2.29
2614 2664 9.701098 CATTGTTTACTTATATTACTAGGCCGA 57.299 33.333 0.00 0.00 0.00 5.54
2615 2665 9.701098 TCATTGTTTACTTATATTACTAGGCCG 57.299 33.333 0.00 0.00 0.00 6.13
2628 2678 9.762381 AAGGAACCCAATATCATTGTTTACTTA 57.238 29.630 6.32 0.00 0.00 2.24
2642 2692 3.558321 CCTCGTTGACAAGGAACCCAATA 60.558 47.826 11.43 0.00 34.35 1.90
2646 2696 1.235281 GCCTCGTTGACAAGGAACCC 61.235 60.000 11.43 0.52 34.35 4.11
2647 2697 0.534203 TGCCTCGTTGACAAGGAACC 60.534 55.000 11.43 6.34 34.35 3.62
2648 2698 0.586802 GTGCCTCGTTGACAAGGAAC 59.413 55.000 11.43 7.59 34.03 3.62
2649 2699 0.878523 CGTGCCTCGTTGACAAGGAA 60.879 55.000 11.43 0.00 34.35 3.36
2673 2724 0.457851 TTGTTTTCAACACGGCTGGG 59.542 50.000 0.00 0.00 41.97 4.45
2674 2725 2.507339 ATTGTTTTCAACACGGCTGG 57.493 45.000 0.00 0.00 42.94 4.85
2687 2738 9.790389 TGTGTTTGTTCGTATTTAGAATTGTTT 57.210 25.926 0.00 0.00 0.00 2.83
2690 2741 8.901748 CCTTGTGTTTGTTCGTATTTAGAATTG 58.098 33.333 0.00 0.00 0.00 2.32
2702 2756 4.568152 AAGATTCCCTTGTGTTTGTTCG 57.432 40.909 0.00 0.00 32.92 3.95
2711 2765 4.107311 TCCTAAACCCAAAGATTCCCTTGT 59.893 41.667 0.00 0.00 34.79 3.16
2712 2766 4.672899 TCCTAAACCCAAAGATTCCCTTG 58.327 43.478 0.00 0.00 34.79 3.61
2713 2767 4.264397 CCTCCTAAACCCAAAGATTCCCTT 60.264 45.833 0.00 0.00 36.47 3.95
2714 2768 3.269643 CCTCCTAAACCCAAAGATTCCCT 59.730 47.826 0.00 0.00 0.00 4.20
2716 2770 4.317530 ACCTCCTAAACCCAAAGATTCC 57.682 45.455 0.00 0.00 0.00 3.01
2718 2772 4.325109 GGCTACCTCCTAAACCCAAAGATT 60.325 45.833 0.00 0.00 0.00 2.40
2719 2773 3.202373 GGCTACCTCCTAAACCCAAAGAT 59.798 47.826 0.00 0.00 0.00 2.40
2720 2774 2.574824 GGCTACCTCCTAAACCCAAAGA 59.425 50.000 0.00 0.00 0.00 2.52
2721 2775 2.307686 TGGCTACCTCCTAAACCCAAAG 59.692 50.000 0.00 0.00 0.00 2.77
2722 2776 2.307686 CTGGCTACCTCCTAAACCCAAA 59.692 50.000 0.00 0.00 0.00 3.28
2723 2777 1.913419 CTGGCTACCTCCTAAACCCAA 59.087 52.381 0.00 0.00 0.00 4.12
2724 2778 1.203389 ACTGGCTACCTCCTAAACCCA 60.203 52.381 0.00 0.00 0.00 4.51
2725 2779 1.209747 CACTGGCTACCTCCTAAACCC 59.790 57.143 0.00 0.00 0.00 4.11
2726 2780 1.907255 ACACTGGCTACCTCCTAAACC 59.093 52.381 0.00 0.00 0.00 3.27
2727 2781 4.021916 TCTACACTGGCTACCTCCTAAAC 58.978 47.826 0.00 0.00 0.00 2.01
2728 2782 4.326600 TCTACACTGGCTACCTCCTAAA 57.673 45.455 0.00 0.00 0.00 1.85
2729 2783 4.215908 CATCTACACTGGCTACCTCCTAA 58.784 47.826 0.00 0.00 0.00 2.69
2730 2784 3.833732 CATCTACACTGGCTACCTCCTA 58.166 50.000 0.00 0.00 0.00 2.94
2731 2785 2.672098 CATCTACACTGGCTACCTCCT 58.328 52.381 0.00 0.00 0.00 3.69
2732 2786 1.069358 GCATCTACACTGGCTACCTCC 59.931 57.143 0.00 0.00 0.00 4.30
2733 2787 1.757118 TGCATCTACACTGGCTACCTC 59.243 52.381 0.00 0.00 0.00 3.85
2734 2788 1.866015 TGCATCTACACTGGCTACCT 58.134 50.000 0.00 0.00 0.00 3.08
2735 2789 2.918712 ATGCATCTACACTGGCTACC 57.081 50.000 0.00 0.00 0.00 3.18
2736 2790 4.322080 TGTATGCATCTACACTGGCTAC 57.678 45.455 0.19 0.00 0.00 3.58
2737 2791 5.104941 ACTTTGTATGCATCTACACTGGCTA 60.105 40.000 0.19 0.00 31.51 3.93
2738 2792 3.912496 TTGTATGCATCTACACTGGCT 57.088 42.857 0.19 0.00 31.51 4.75
2739 2793 3.941483 ACTTTGTATGCATCTACACTGGC 59.059 43.478 0.19 0.00 31.51 4.85
2740 2794 5.412594 ACAACTTTGTATGCATCTACACTGG 59.587 40.000 0.19 0.00 40.16 4.00
2741 2795 6.073058 ACACAACTTTGTATGCATCTACACTG 60.073 38.462 0.19 1.17 39.91 3.66
2742 2796 5.997746 ACACAACTTTGTATGCATCTACACT 59.002 36.000 0.19 0.00 39.91 3.55
2743 2797 6.079763 CACACAACTTTGTATGCATCTACAC 58.920 40.000 0.19 0.00 39.91 2.90
2744 2798 5.181056 CCACACAACTTTGTATGCATCTACA 59.819 40.000 0.19 0.00 39.91 2.74
2745 2799 5.411361 TCCACACAACTTTGTATGCATCTAC 59.589 40.000 0.19 0.00 39.91 2.59
2746 2800 5.555966 TCCACACAACTTTGTATGCATCTA 58.444 37.500 0.19 0.00 39.91 1.98
2747 2801 4.397420 TCCACACAACTTTGTATGCATCT 58.603 39.130 0.19 0.00 39.91 2.90
2793 2847 3.322466 ACAGGGCGGAGGTCAAGG 61.322 66.667 0.00 0.00 0.00 3.61
2794 2848 1.541310 TACACAGGGCGGAGGTCAAG 61.541 60.000 0.00 0.00 0.00 3.02
2795 2849 1.534476 TACACAGGGCGGAGGTCAA 60.534 57.895 0.00 0.00 0.00 3.18
2796 2850 1.982395 CTACACAGGGCGGAGGTCA 60.982 63.158 0.00 0.00 0.00 4.02
2797 2851 1.946475 GACTACACAGGGCGGAGGTC 61.946 65.000 0.00 0.00 0.00 3.85
2798 2852 1.982938 GACTACACAGGGCGGAGGT 60.983 63.158 0.00 0.00 0.00 3.85
2803 2857 1.215647 GGACTGACTACACAGGGCG 59.784 63.158 0.00 0.00 41.59 6.13
2838 2892 2.104967 CCTACCCGACTACATGTTCCA 58.895 52.381 2.30 0.00 0.00 3.53
2853 2907 1.282157 AGTTGGCAACCATCTCCTACC 59.718 52.381 25.81 0.00 28.41 3.18
2882 2936 2.289547 CACCCTTGACGGTAACTGTTTG 59.710 50.000 0.00 0.00 33.67 2.93
2926 2981 0.744771 GGGGCGAAGGTCATCTGAAC 60.745 60.000 0.00 0.00 0.00 3.18
2966 3022 2.342910 ACTACCGAACAACTACAGCG 57.657 50.000 0.00 0.00 0.00 5.18
2972 3028 2.798976 TGCGTTACTACCGAACAACT 57.201 45.000 0.00 0.00 0.00 3.16
2984 3040 4.609691 TTTAGCTGCCTTAATGCGTTAC 57.390 40.909 0.00 0.00 0.00 2.50
3025 3084 1.172175 CCTTCTTCTTGCAGGGCTTC 58.828 55.000 0.00 0.00 0.00 3.86
3087 3155 4.625742 TCTTTTAAGCCGACTGAAAGATCG 59.374 41.667 6.49 0.00 35.56 3.69
3114 3182 0.738412 AGCATACGTCGTTTTCGGGG 60.738 55.000 1.78 0.00 44.25 5.73
3203 3271 0.036732 GGCCGGCTTCATCCATATCA 59.963 55.000 28.56 0.00 0.00 2.15
3312 3694 3.365535 GGCCTGCGTGGTCAAATT 58.634 55.556 0.00 0.00 40.97 1.82
3322 3707 1.672030 TCAGACATGTTGGCCTGCG 60.672 57.895 3.32 0.00 0.00 5.18
3391 3776 2.817834 TGCGCGTGTAATCTGGCC 60.818 61.111 8.43 0.00 0.00 5.36
3518 3907 4.023279 TGTCAGTCAAATGGGTCATTTTCG 60.023 41.667 3.43 0.00 40.60 3.46
3533 3922 2.161855 GCCATGTCCAATTGTCAGTCA 58.838 47.619 4.43 0.00 0.00 3.41
3616 4019 3.310860 AACCGCCAGGACGATCACC 62.311 63.158 4.99 0.00 41.02 4.02
3655 4058 2.089980 CTTCTGCATTTCCACAGGAGG 58.910 52.381 0.00 0.00 36.10 4.30
3729 4132 4.874966 AGCCTGTCTTGTACTACGTACTAG 59.125 45.833 8.61 8.61 40.99 2.57
3738 4142 5.242795 ACCAAATTAGCCTGTCTTGTACT 57.757 39.130 0.00 0.00 0.00 2.73
3739 4143 5.472137 TGAACCAAATTAGCCTGTCTTGTAC 59.528 40.000 0.00 0.00 0.00 2.90
3740 4144 5.626142 TGAACCAAATTAGCCTGTCTTGTA 58.374 37.500 0.00 0.00 0.00 2.41
3744 4148 4.666512 ACATGAACCAAATTAGCCTGTCT 58.333 39.130 0.00 0.00 0.00 3.41
3862 4266 2.186384 CTGCTTCGGCCCTGAGAG 59.814 66.667 0.00 0.00 40.91 3.20
4252 4694 2.755650 AGAAAGCGAACACCACACTAG 58.244 47.619 0.00 0.00 0.00 2.57
4291 4733 3.305177 ATCGCCACCGTACCACCAC 62.305 63.158 0.00 0.00 35.54 4.16
4292 4734 2.998480 ATCGCCACCGTACCACCA 60.998 61.111 0.00 0.00 35.54 4.17
4293 4735 2.202837 GATCGCCACCGTACCACC 60.203 66.667 0.00 0.00 35.54 4.61
4331 4773 2.530151 TTCCAGTCCAGCAGCCCT 60.530 61.111 0.00 0.00 0.00 5.19
4573 5024 2.953466 CCATTGATGGTTTCTGGCTG 57.047 50.000 1.73 0.00 43.05 4.85
4586 5037 5.534207 AAGTTTCAACATTCTGCCATTGA 57.466 34.783 0.00 0.00 0.00 2.57
4605 5059 4.976116 GTCGTAGCAAAATTTCAGCAAAGT 59.024 37.500 15.35 1.01 0.00 2.66
4606 5060 4.087085 CGTCGTAGCAAAATTTCAGCAAAG 59.913 41.667 15.35 7.64 0.00 2.77
4622 5077 0.168348 CCTCTGGTGACACGTCGTAG 59.832 60.000 0.00 0.00 35.60 3.51
4869 5332 0.825010 AAGCAGGTCAGCCACAAAGG 60.825 55.000 0.00 0.00 41.84 3.11
5140 5603 1.292541 GAACCTGTCCCTGTCCGAC 59.707 63.158 0.00 0.00 0.00 4.79
5233 5696 0.548031 ACATGTCCCTACCCAGCATG 59.452 55.000 0.00 0.00 41.67 4.06
5473 5946 0.167908 TGCGATGCCTTTTAAGCACG 59.832 50.000 0.00 0.00 44.40 5.34
5489 5963 1.490693 CTTGGCGGTACATAGCTGCG 61.491 60.000 0.00 0.00 0.00 5.18
5579 6054 4.048470 GGGGGTTCCTCAGGGCAC 62.048 72.222 0.00 0.00 0.00 5.01
5582 6057 1.384643 CCTAGGGGGTTCCTCAGGG 60.385 68.421 0.00 0.00 44.06 4.45
5585 6060 0.797579 AAGTCCTAGGGGGTTCCTCA 59.202 55.000 9.46 0.00 44.06 3.86
5589 6064 2.238144 GGTGTTAAGTCCTAGGGGGTTC 59.762 54.545 9.46 0.00 36.25 3.62
5590 6065 2.272698 GGTGTTAAGTCCTAGGGGGTT 58.727 52.381 9.46 2.72 36.25 4.11
5592 6067 0.828677 CGGTGTTAAGTCCTAGGGGG 59.171 60.000 9.46 0.00 0.00 5.40
5599 6074 7.895975 AAATTACTTAGTCGGTGTTAAGTCC 57.104 36.000 0.00 0.00 39.89 3.85
5601 6076 9.208022 GGTAAAATTACTTAGTCGGTGTTAAGT 57.792 33.333 3.55 2.88 41.57 2.24
5602 6077 8.375465 CGGTAAAATTACTTAGTCGGTGTTAAG 58.625 37.037 3.55 0.00 34.16 1.85
5603 6078 7.330700 CCGGTAAAATTACTTAGTCGGTGTTAA 59.669 37.037 0.00 0.00 34.16 2.01
5604 6079 6.811170 CCGGTAAAATTACTTAGTCGGTGTTA 59.189 38.462 0.00 0.00 34.16 2.41
5605 6080 5.639082 CCGGTAAAATTACTTAGTCGGTGTT 59.361 40.000 0.00 0.00 34.16 3.32
5606 6081 5.047377 TCCGGTAAAATTACTTAGTCGGTGT 60.047 40.000 0.00 0.00 33.74 4.16
5607 6082 5.410067 TCCGGTAAAATTACTTAGTCGGTG 58.590 41.667 0.00 0.00 33.74 4.94
5608 6083 5.654497 CTCCGGTAAAATTACTTAGTCGGT 58.346 41.667 0.00 0.00 33.74 4.69
5609 6084 4.505556 GCTCCGGTAAAATTACTTAGTCGG 59.494 45.833 0.00 10.01 33.51 4.79
5610 6085 4.505556 GGCTCCGGTAAAATTACTTAGTCG 59.494 45.833 0.00 0.00 34.16 4.18
5611 6086 4.505556 CGGCTCCGGTAAAATTACTTAGTC 59.494 45.833 0.00 0.00 34.16 2.59
5612 6087 4.436332 CGGCTCCGGTAAAATTACTTAGT 58.564 43.478 0.00 0.00 34.16 2.24
5627 6102 1.734137 CCGATATATCCCGGCTCCG 59.266 63.158 7.15 0.48 39.22 4.63
5633 6108 1.182667 TCCAGCACCGATATATCCCG 58.817 55.000 7.15 0.48 0.00 5.14
5634 6109 2.103263 GGATCCAGCACCGATATATCCC 59.897 54.545 6.95 0.00 0.00 3.85
5635 6110 2.766263 TGGATCCAGCACCGATATATCC 59.234 50.000 11.44 0.00 33.53 2.59
5636 6111 3.430929 GGTGGATCCAGCACCGATATATC 60.431 52.174 33.83 10.02 43.20 1.63
5637 6112 2.501723 GGTGGATCCAGCACCGATATAT 59.498 50.000 33.83 0.00 43.20 0.86
5638 6113 1.899814 GGTGGATCCAGCACCGATATA 59.100 52.381 33.83 0.00 43.20 0.86
5639 6114 0.687354 GGTGGATCCAGCACCGATAT 59.313 55.000 33.83 0.00 43.20 1.63
5640 6115 1.407656 GGGTGGATCCAGCACCGATA 61.408 60.000 37.48 2.23 45.25 2.92
5641 6116 2.746375 GGGTGGATCCAGCACCGAT 61.746 63.158 37.48 0.00 45.25 4.18
5642 6117 3.399181 GGGTGGATCCAGCACCGA 61.399 66.667 37.48 3.80 45.25 4.69
5643 6118 2.876368 GAAGGGTGGATCCAGCACCG 62.876 65.000 37.48 0.00 45.25 4.94
5644 6119 1.077429 GAAGGGTGGATCCAGCACC 60.077 63.158 37.48 27.67 45.25 5.01
5645 6120 1.450312 CGAAGGGTGGATCCAGCAC 60.450 63.158 37.48 27.81 45.25 4.40
5646 6121 1.899437 GACGAAGGGTGGATCCAGCA 61.899 60.000 37.48 6.20 45.25 4.41
5647 6122 1.153349 GACGAAGGGTGGATCCAGC 60.153 63.158 31.75 31.75 43.00 4.85
5648 6123 1.264749 TGGACGAAGGGTGGATCCAG 61.265 60.000 16.81 4.59 34.50 3.86
5649 6124 0.620410 ATGGACGAAGGGTGGATCCA 60.620 55.000 11.44 11.44 43.42 3.41
5650 6125 0.546598 AATGGACGAAGGGTGGATCC 59.453 55.000 4.20 4.20 0.00 3.36
5651 6126 2.289565 GAAATGGACGAAGGGTGGATC 58.710 52.381 0.00 0.00 0.00 3.36
5652 6127 1.406887 CGAAATGGACGAAGGGTGGAT 60.407 52.381 0.00 0.00 0.00 3.41
5653 6128 0.036765 CGAAATGGACGAAGGGTGGA 60.037 55.000 0.00 0.00 0.00 4.02
5654 6129 1.644786 GCGAAATGGACGAAGGGTGG 61.645 60.000 0.00 0.00 0.00 4.61
5655 6130 1.644786 GGCGAAATGGACGAAGGGTG 61.645 60.000 0.00 0.00 0.00 4.61
5656 6131 1.376812 GGCGAAATGGACGAAGGGT 60.377 57.895 0.00 0.00 0.00 4.34
5657 6132 0.958382 TTGGCGAAATGGACGAAGGG 60.958 55.000 0.00 0.00 0.00 3.95
5658 6133 0.447801 CTTGGCGAAATGGACGAAGG 59.552 55.000 0.00 0.00 0.00 3.46
5659 6134 1.438651 TCTTGGCGAAATGGACGAAG 58.561 50.000 0.00 0.00 0.00 3.79
5660 6135 2.006888 GATCTTGGCGAAATGGACGAA 58.993 47.619 0.00 0.00 0.00 3.85
5661 6136 1.651987 GATCTTGGCGAAATGGACGA 58.348 50.000 0.00 0.00 0.00 4.20
5662 6137 0.657840 GGATCTTGGCGAAATGGACG 59.342 55.000 0.00 0.00 0.00 4.79
5663 6138 0.657840 CGGATCTTGGCGAAATGGAC 59.342 55.000 0.00 0.00 0.00 4.02
5664 6139 1.095228 GCGGATCTTGGCGAAATGGA 61.095 55.000 0.00 0.00 0.00 3.41
5665 6140 1.356624 GCGGATCTTGGCGAAATGG 59.643 57.895 0.00 0.00 0.00 3.16
5673 6148 4.845580 AGCTGCCGCGGATCTTGG 62.846 66.667 33.48 11.99 42.32 3.61
5674 6149 1.926511 AAAAGCTGCCGCGGATCTTG 61.927 55.000 33.48 13.94 42.32 3.02
5675 6150 1.675641 AAAAGCTGCCGCGGATCTT 60.676 52.632 33.48 23.63 42.32 2.40
5676 6151 2.045926 AAAAGCTGCCGCGGATCT 60.046 55.556 33.48 18.90 42.32 2.75
5677 6152 2.100991 CAAAAGCTGCCGCGGATC 59.899 61.111 33.48 16.69 42.32 3.36
5678 6153 2.672996 ACAAAAGCTGCCGCGGAT 60.673 55.556 33.48 8.25 42.32 4.18
5679 6154 3.659092 CACAAAAGCTGCCGCGGA 61.659 61.111 33.48 13.59 42.32 5.54
5680 6155 3.599792 CTCACAAAAGCTGCCGCGG 62.600 63.158 24.05 24.05 42.32 6.46
5681 6156 2.127118 CTCACAAAAGCTGCCGCG 60.127 61.111 0.00 0.00 42.32 6.46
5682 6157 2.192608 CTCCTCACAAAAGCTGCCGC 62.193 60.000 0.00 0.00 0.00 6.53
5683 6158 0.603707 TCTCCTCACAAAAGCTGCCG 60.604 55.000 0.00 0.00 0.00 5.69
5684 6159 1.609208 TTCTCCTCACAAAAGCTGCC 58.391 50.000 0.00 0.00 0.00 4.85
5685 6160 2.030451 CCTTTCTCCTCACAAAAGCTGC 60.030 50.000 0.00 0.00 0.00 5.25
5696 6171 2.550830 TGCAAGTGTCCTTTCTCCTC 57.449 50.000 0.00 0.00 0.00 3.71
5740 6220 2.125350 CTTGCGTGGGGAGAGAGC 60.125 66.667 0.00 0.00 0.00 4.09
5852 6335 6.095720 TCGGTATTGTTTCAAAGGTCTTGTTT 59.904 34.615 0.00 0.00 0.00 2.83
5853 6336 5.591067 TCGGTATTGTTTCAAAGGTCTTGTT 59.409 36.000 0.00 0.00 0.00 2.83
5872 6355 9.839817 TTGTTCAAAATATATCCAAGATCGGTA 57.160 29.630 0.00 0.00 0.00 4.02
6147 6645 8.073768 TGAAATCTATTTTTGGAACGAGTGAAC 58.926 33.333 0.00 0.00 0.00 3.18
6183 6681 8.641499 TTTGGAAATGAGTGTAATGTGTTTTC 57.359 30.769 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.