Multiple sequence alignment - TraesCS2D01G217300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G217300 chr2D 100.000 5884 0 0 1 5884 180875841 180881724 0.000000e+00 10866.0
1 TraesCS2D01G217300 chr2D 98.507 335 5 0 3570 3904 442879086 442879420 5.080000e-165 592.0
2 TraesCS2D01G217300 chr2D 93.671 237 14 1 5648 5884 112870946 112871181 2.610000e-93 353.0
3 TraesCS2D01G217300 chr2D 93.991 233 14 0 5652 5884 644999395 644999163 2.610000e-93 353.0
4 TraesCS2D01G217300 chr2D 87.363 182 19 3 133 313 204108067 204107889 7.730000e-49 206.0
5 TraesCS2D01G217300 chr2D 92.857 140 9 1 1 139 204108161 204108022 1.000000e-47 202.0
6 TraesCS2D01G217300 chr2D 88.489 139 13 3 134 270 44686790 44686653 1.310000e-36 165.0
7 TraesCS2D01G217300 chr2D 85.938 128 18 0 6 133 248462746 248462873 2.860000e-28 137.0
8 TraesCS2D01G217300 chr2D 91.489 94 7 1 1 93 22607149 22607242 1.720000e-25 128.0
9 TraesCS2D01G217300 chr2D 100.000 48 0 0 133 180 180875934 180875981 8.120000e-14 89.8
10 TraesCS2D01G217300 chr2D 100.000 48 0 0 94 141 180875973 180876020 8.120000e-14 89.8
11 TraesCS2D01G217300 chr2B 93.739 1757 60 16 358 2077 237342820 237344563 0.000000e+00 2590.0
12 TraesCS2D01G217300 chr2B 96.789 1495 41 6 2077 3568 237344685 237346175 0.000000e+00 2488.0
13 TraesCS2D01G217300 chr2B 94.705 982 34 7 4649 5620 237347483 237348456 0.000000e+00 1509.0
14 TraesCS2D01G217300 chr2B 95.152 722 32 2 3906 4624 237346775 237347496 0.000000e+00 1136.0
15 TraesCS2D01G217300 chr2B 96.500 200 6 1 3906 4104 237346194 237346393 4.400000e-86 329.0
16 TraesCS2D01G217300 chr2B 92.899 169 9 2 133 301 237342657 237342822 5.890000e-60 243.0
17 TraesCS2D01G217300 chr2B 86.413 184 20 3 133 315 416841663 416841842 4.650000e-46 196.0
18 TraesCS2D01G217300 chr2B 95.833 120 4 1 3906 4024 237346396 237346515 6.020000e-45 193.0
19 TraesCS2D01G217300 chr2A 96.072 1502 43 6 2077 3575 195310394 195311882 0.000000e+00 2433.0
20 TraesCS2D01G217300 chr2A 96.386 1356 43 5 722 2077 195308923 195310272 0.000000e+00 2228.0
21 TraesCS2D01G217300 chr2A 95.431 1160 48 4 4501 5656 195312448 195313606 0.000000e+00 1844.0
22 TraesCS2D01G217300 chr2A 95.812 573 21 2 3902 4471 195311879 195312451 0.000000e+00 922.0
23 TraesCS2D01G217300 chr2A 88.722 266 15 2 340 602 195308465 195308718 1.590000e-80 311.0
24 TraesCS2D01G217300 chr2A 89.610 154 16 0 5189 5342 141506317 141506470 4.650000e-46 196.0
25 TraesCS2D01G217300 chr2A 88.489 139 9 5 601 734 195308771 195308907 1.700000e-35 161.0
26 TraesCS2D01G217300 chr5A 99.094 331 3 0 3574 3904 366234814 366235144 3.930000e-166 595.0
27 TraesCS2D01G217300 chr5A 94.397 232 13 0 5653 5884 34841905 34842136 2.020000e-94 357.0
28 TraesCS2D01G217300 chr5A 93.878 147 9 0 5190 5336 396688832 396688686 7.670000e-54 222.0
29 TraesCS2D01G217300 chr5A 86.667 180 22 2 136 313 617475700 617475521 1.290000e-46 198.0
30 TraesCS2D01G217300 chr5A 87.857 140 16 1 4 142 617475794 617475655 4.720000e-36 163.0
31 TraesCS2D01G217300 chr5A 95.652 46 2 0 3526 3571 447544571 447544526 2.270000e-09 75.0
32 TraesCS2D01G217300 chr3A 98.225 338 6 0 3567 3904 308688528 308688865 5.080000e-165 592.0
33 TraesCS2D01G217300 chr3A 97.929 338 7 0 3567 3904 369399089 369399426 2.360000e-163 586.0
34 TraesCS2D01G217300 chr3A 95.319 235 10 1 5650 5884 424088815 424089048 7.200000e-99 372.0
35 TraesCS2D01G217300 chr3A 90.909 154 14 0 5190 5343 299529059 299529212 2.150000e-49 207.0
36 TraesCS2D01G217300 chr3A 84.242 165 23 3 1159 1322 556547876 556548038 2.200000e-34 158.0
37 TraesCS2D01G217300 chr5B 98.225 338 5 1 3567 3904 613773985 613774321 1.830000e-164 590.0
38 TraesCS2D01G217300 chr5B 87.701 187 14 6 133 310 628670274 628670088 5.980000e-50 209.0
39 TraesCS2D01G217300 chr5B 93.162 117 8 0 133 249 625090724 625090608 7.840000e-39 172.0
40 TraesCS2D01G217300 chr5B 97.619 42 1 0 3527 3568 440023203 440023162 8.180000e-09 73.1
41 TraesCS2D01G217300 chr5D 97.935 339 7 0 3566 3904 267759292 267759630 6.570000e-164 588.0
42 TraesCS2D01G217300 chr5D 82.320 181 23 8 2274 2447 564658713 564658535 1.320000e-31 148.0
43 TraesCS2D01G217300 chr5D 100.000 42 0 0 3527 3568 371021201 371021242 1.760000e-10 78.7
44 TraesCS2D01G217300 chr6A 97.929 338 7 0 3567 3904 410901501 410901838 2.360000e-163 586.0
45 TraesCS2D01G217300 chr6A 81.771 192 27 6 2266 2457 505236213 505236396 2.840000e-33 154.0
46 TraesCS2D01G217300 chr4D 97.929 338 7 0 3567 3904 313597758 313597421 2.360000e-163 586.0
47 TraesCS2D01G217300 chr3B 97.929 338 7 0 3567 3904 398842373 398842710 2.360000e-163 586.0
48 TraesCS2D01G217300 chr3B 90.625 128 9 1 133 260 187442847 187442971 3.650000e-37 167.0
49 TraesCS2D01G217300 chr3D 96.121 232 9 0 5653 5884 62813600 62813831 4.300000e-101 379.0
50 TraesCS2D01G217300 chr3D 94.068 236 13 1 5649 5884 306028956 306029190 2.020000e-94 357.0
51 TraesCS2D01G217300 chr3D 84.181 177 23 4 2255 2429 352392617 352392790 3.650000e-37 167.0
52 TraesCS2D01G217300 chr3D 81.910 199 34 2 1159 1356 429308304 429308107 3.650000e-37 167.0
53 TraesCS2D01G217300 chr3D 90.678 118 11 0 142 259 19930960 19931077 2.200000e-34 158.0
54 TraesCS2D01G217300 chr3D 79.775 178 27 9 2280 2453 378784115 378783943 2.880000e-23 121.0
55 TraesCS2D01G217300 chr3D 84.553 123 15 3 2327 2447 560873650 560873770 1.040000e-22 119.0
56 TraesCS2D01G217300 chr3D 95.745 47 1 1 3522 3568 66523470 66523425 2.270000e-09 75.0
57 TraesCS2D01G217300 chr3D 90.566 53 4 1 3526 3578 1767532 1767481 1.060000e-07 69.4
58 TraesCS2D01G217300 chr1D 93.617 235 15 0 5650 5884 365804557 365804791 9.380000e-93 351.0
59 TraesCS2D01G217300 chr1D 90.000 190 13 3 133 316 426615373 426615562 2.120000e-59 241.0
60 TraesCS2D01G217300 chr1B 93.617 235 15 0 5650 5884 538625374 538625608 9.380000e-93 351.0
61 TraesCS2D01G217300 chr1B 86.316 190 22 4 129 315 42173017 42173205 2.780000e-48 204.0
62 TraesCS2D01G217300 chr1B 88.550 131 13 2 1 129 161984292 161984422 2.200000e-34 158.0
63 TraesCS2D01G217300 chr7B 92.593 243 16 2 5644 5884 598296136 598296378 1.210000e-91 348.0
64 TraesCS2D01G217300 chr7B 91.667 84 6 1 1 83 653983339 653983422 1.340000e-21 115.0
65 TraesCS2D01G217300 chr7B 84.404 109 17 0 2340 2448 1295830 1295938 2.240000e-19 108.0
66 TraesCS2D01G217300 chr4A 82.436 353 48 12 2081 2429 45110544 45110202 4.460000e-76 296.0
67 TraesCS2D01G217300 chr4A 84.659 176 24 3 2266 2439 45110552 45110726 7.840000e-39 172.0
68 TraesCS2D01G217300 chr4A 93.750 48 3 0 3521 3568 214314411 214314458 8.180000e-09 73.1
69 TraesCS2D01G217300 chr4B 80.376 372 54 15 2081 2447 78490328 78490685 1.260000e-66 265.0
70 TraesCS2D01G217300 chr6D 91.026 156 14 0 5187 5342 429842081 429842236 1.660000e-50 211.0
71 TraesCS2D01G217300 chr6D 92.199 141 10 1 1 140 333378499 333378359 1.290000e-46 198.0
72 TraesCS2D01G217300 chr6D 83.784 185 11 9 133 315 333378405 333378238 2.200000e-34 158.0
73 TraesCS2D01G217300 chr7A 86.842 190 20 1 135 319 43134068 43134257 2.150000e-49 207.0
74 TraesCS2D01G217300 chr7A 89.172 157 16 1 5187 5342 579808530 579808374 1.670000e-45 195.0
75 TraesCS2D01G217300 chr7A 89.516 124 12 1 18 141 13050789 13050667 7.900000e-34 156.0
76 TraesCS2D01G217300 chr6B 90.260 154 14 1 5187 5340 648090060 648090212 3.600000e-47 200.0
77 TraesCS2D01G217300 chr6B 90.541 148 14 0 5195 5342 707799587 707799734 4.650000e-46 196.0
78 TraesCS2D01G217300 chr6B 89.781 137 13 1 1 136 85116643 85116779 2.180000e-39 174.0
79 TraesCS2D01G217300 chr6B 88.732 71 5 3 251 318 716537596 716537526 3.780000e-12 84.2
80 TraesCS2D01G217300 chrUn 89.928 139 13 1 1 138 32256670 32256808 1.680000e-40 178.0
81 TraesCS2D01G217300 chrUn 81.768 181 26 3 138 311 32256769 32256949 1.710000e-30 145.0
82 TraesCS2D01G217300 chrUn 97.619 42 1 0 3526 3567 30123194 30123153 8.180000e-09 73.1
83 TraesCS2D01G217300 chr1A 88.489 139 15 1 1 138 584497396 584497534 3.650000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G217300 chr2D 180875841 180881724 5883 False 10866.000000 10866 100.000000 1 5884 1 chr2D.!!$F3 5883
1 TraesCS2D01G217300 chr2B 237342657 237348456 5799 False 1212.571429 2590 95.088143 133 5620 7 chr2B.!!$F2 5487
2 TraesCS2D01G217300 chr2A 195308465 195313606 5141 False 1316.500000 2433 93.485333 340 5656 6 chr2A.!!$F2 5316

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.032017 TCTGGGAAGGAGGAGTAGCC 60.032 60.0 0.00 0.0 0.0 3.93 F
1620 1740 0.322187 ACCACTGTATTTGCCCCGTC 60.322 55.0 0.00 0.0 0.0 4.79 F
2804 3063 1.376609 CCTGCATACCCGGCTTGTTC 61.377 60.0 0.00 0.0 0.0 3.18 F
3657 3918 0.175073 ACCCATAAGTTCTCGCGACC 59.825 55.0 3.71 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 2356 4.282703 TCTGTGTACTGAAAACTAGGACCC 59.717 45.833 0.0 0.00 0.00 4.46 R
3617 3878 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.0 0.00 0.00 4.12 R
3798 4059 0.026803 GCTAAAGCGTGCGGAGAATG 59.973 55.000 0.0 0.00 0.00 2.67 R
4904 5430 0.326264 GCTCACCTGGATCCAACAGT 59.674 55.000 17.0 10.76 34.16 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.485124 ATCTCACCCGCATCACTACA 58.515 50.000 0.00 0.00 0.00 2.74
20 21 1.262417 TCTCACCCGCATCACTACAA 58.738 50.000 0.00 0.00 0.00 2.41
21 22 1.621317 TCTCACCCGCATCACTACAAA 59.379 47.619 0.00 0.00 0.00 2.83
22 23 1.732259 CTCACCCGCATCACTACAAAC 59.268 52.381 0.00 0.00 0.00 2.93
23 24 0.442310 CACCCGCATCACTACAAACG 59.558 55.000 0.00 0.00 0.00 3.60
24 25 1.296056 ACCCGCATCACTACAAACGC 61.296 55.000 0.00 0.00 0.00 4.84
25 26 1.423845 CCGCATCACTACAAACGCC 59.576 57.895 0.00 0.00 0.00 5.68
26 27 1.019278 CCGCATCACTACAAACGCCT 61.019 55.000 0.00 0.00 0.00 5.52
27 28 0.370273 CGCATCACTACAAACGCCTC 59.630 55.000 0.00 0.00 0.00 4.70
28 29 0.727398 GCATCACTACAAACGCCTCC 59.273 55.000 0.00 0.00 0.00 4.30
29 30 1.943968 GCATCACTACAAACGCCTCCA 60.944 52.381 0.00 0.00 0.00 3.86
30 31 2.002586 CATCACTACAAACGCCTCCAG 58.997 52.381 0.00 0.00 0.00 3.86
31 32 0.320421 TCACTACAAACGCCTCCAGC 60.320 55.000 0.00 0.00 38.52 4.85
32 33 0.602638 CACTACAAACGCCTCCAGCA 60.603 55.000 0.00 0.00 44.04 4.41
33 34 0.320771 ACTACAAACGCCTCCAGCAG 60.321 55.000 0.00 0.00 44.04 4.24
34 35 1.003839 TACAAACGCCTCCAGCAGG 60.004 57.895 0.00 0.00 46.82 4.85
43 44 3.640407 TCCAGCAGGAGCCACCAC 61.640 66.667 0.00 0.00 43.56 4.16
56 57 4.856801 ACCACGCCGCCATGGATC 62.857 66.667 18.40 1.75 42.00 3.36
57 58 4.854924 CCACGCCGCCATGGATCA 62.855 66.667 18.40 0.00 42.00 2.92
58 59 2.823593 CACGCCGCCATGGATCAA 60.824 61.111 18.40 0.00 42.00 2.57
59 60 2.514592 ACGCCGCCATGGATCAAG 60.515 61.111 18.40 4.47 42.00 3.02
60 61 3.282157 CGCCGCCATGGATCAAGG 61.282 66.667 18.40 10.87 42.00 3.61
61 62 2.192979 GCCGCCATGGATCAAGGA 59.807 61.111 18.40 0.00 42.00 3.36
62 63 1.453745 GCCGCCATGGATCAAGGAA 60.454 57.895 18.40 0.00 42.00 3.36
63 64 1.450531 GCCGCCATGGATCAAGGAAG 61.451 60.000 18.40 0.00 42.00 3.46
64 65 0.181114 CCGCCATGGATCAAGGAAGA 59.819 55.000 18.40 0.00 42.00 2.87
65 66 1.590932 CGCCATGGATCAAGGAAGAG 58.409 55.000 18.40 0.00 0.00 2.85
66 67 1.813092 CGCCATGGATCAAGGAAGAGG 60.813 57.143 18.40 0.00 0.00 3.69
67 68 1.978454 CCATGGATCAAGGAAGAGGC 58.022 55.000 5.56 0.00 0.00 4.70
68 69 1.478288 CCATGGATCAAGGAAGAGGCC 60.478 57.143 5.56 0.00 0.00 5.19
69 70 0.471617 ATGGATCAAGGAAGAGGCCG 59.528 55.000 0.00 0.00 0.00 6.13
70 71 1.524849 GGATCAAGGAAGAGGCCGC 60.525 63.158 0.00 0.00 0.00 6.53
71 72 1.221840 GATCAAGGAAGAGGCCGCA 59.778 57.895 9.88 0.00 0.00 5.69
72 73 1.078143 ATCAAGGAAGAGGCCGCAC 60.078 57.895 9.88 1.89 0.00 5.34
73 74 2.543067 ATCAAGGAAGAGGCCGCACC 62.543 60.000 9.88 11.85 39.61 5.01
86 87 4.899239 GCACCTCCGCGGATCTGG 62.899 72.222 31.19 28.04 36.31 3.86
87 88 4.899239 CACCTCCGCGGATCTGGC 62.899 72.222 31.19 1.35 36.31 4.85
107 108 4.849329 CCTCGCCGCCGTACAGTC 62.849 72.222 0.00 0.00 35.54 3.51
108 109 3.812019 CTCGCCGCCGTACAGTCT 61.812 66.667 0.00 0.00 35.54 3.24
109 110 4.111016 TCGCCGCCGTACAGTCTG 62.111 66.667 0.00 0.00 35.54 3.51
111 112 4.814294 GCCGCCGTACAGTCTGGG 62.814 72.222 4.53 0.00 0.00 4.45
112 113 3.066190 CCGCCGTACAGTCTGGGA 61.066 66.667 4.53 0.00 0.00 4.37
113 114 2.642254 CCGCCGTACAGTCTGGGAA 61.642 63.158 4.53 0.00 0.00 3.97
114 115 1.153823 CGCCGTACAGTCTGGGAAG 60.154 63.158 4.53 0.00 0.00 3.46
115 116 1.218316 GCCGTACAGTCTGGGAAGG 59.782 63.158 4.53 4.86 0.00 3.46
116 117 1.255667 GCCGTACAGTCTGGGAAGGA 61.256 60.000 4.53 0.00 0.00 3.36
117 118 0.818296 CCGTACAGTCTGGGAAGGAG 59.182 60.000 4.53 0.00 0.00 3.69
118 119 0.818296 CGTACAGTCTGGGAAGGAGG 59.182 60.000 4.53 0.00 0.00 4.30
119 120 1.616187 CGTACAGTCTGGGAAGGAGGA 60.616 57.143 4.53 0.00 0.00 3.71
120 121 2.104170 GTACAGTCTGGGAAGGAGGAG 58.896 57.143 4.53 0.00 0.00 3.69
121 122 0.489567 ACAGTCTGGGAAGGAGGAGT 59.510 55.000 4.53 0.00 0.00 3.85
122 123 1.717077 ACAGTCTGGGAAGGAGGAGTA 59.283 52.381 4.53 0.00 0.00 2.59
123 124 2.291930 ACAGTCTGGGAAGGAGGAGTAG 60.292 54.545 4.53 0.00 0.00 2.57
124 125 1.116308 GTCTGGGAAGGAGGAGTAGC 58.884 60.000 0.00 0.00 0.00 3.58
125 126 0.032017 TCTGGGAAGGAGGAGTAGCC 60.032 60.000 0.00 0.00 0.00 3.93
126 127 1.003051 TGGGAAGGAGGAGTAGCCC 59.997 63.158 0.00 0.00 37.37 5.19
127 128 1.315216 GGGAAGGAGGAGTAGCCCT 59.685 63.158 0.00 0.00 39.77 5.19
160 161 0.489567 ACAGTCTGGGAAGGAGGAGT 59.510 55.000 4.53 0.00 0.00 3.85
268 269 4.822628 GCTGGGGGCTAGGGTTGC 62.823 72.222 0.00 0.00 38.06 4.17
309 310 3.885521 CGAGCGACGAGGGGGTAC 61.886 72.222 0.00 0.00 45.77 3.34
310 311 3.885521 GAGCGACGAGGGGGTACG 61.886 72.222 0.00 0.00 0.00 3.67
311 312 4.415150 AGCGACGAGGGGGTACGA 62.415 66.667 0.00 0.00 0.00 3.43
312 313 3.885521 GCGACGAGGGGGTACGAG 61.886 72.222 0.00 0.00 0.00 4.18
313 314 3.207669 CGACGAGGGGGTACGAGG 61.208 72.222 0.00 0.00 0.00 4.63
314 315 2.832201 GACGAGGGGGTACGAGGG 60.832 72.222 0.00 0.00 0.00 4.30
315 316 4.453892 ACGAGGGGGTACGAGGGG 62.454 72.222 0.00 0.00 0.00 4.79
317 318 4.085546 GAGGGGGTACGAGGGGGT 62.086 72.222 0.00 0.00 0.00 4.95
318 319 4.085546 AGGGGGTACGAGGGGGTC 62.086 72.222 0.00 0.00 0.00 4.46
375 379 0.944311 CACGTCTCCTGTTGTTCCCG 60.944 60.000 0.00 0.00 0.00 5.14
402 406 1.616091 CGCCATGCCTCCCCAAAATT 61.616 55.000 0.00 0.00 0.00 1.82
854 964 4.120589 GACATGTTTATCCCCTTCGACTC 58.879 47.826 0.00 0.00 0.00 3.36
882 992 1.699656 CGCCTTCTGTTCCTCGCATG 61.700 60.000 0.00 0.00 0.00 4.06
1248 1368 3.712907 GCCAACTACCTCCGGCCA 61.713 66.667 2.24 0.00 38.67 5.36
1296 1416 1.414181 CGCTCCACCAATGTCCTCTAT 59.586 52.381 0.00 0.00 0.00 1.98
1335 1455 4.686437 ACCCCCACATCCCCCGAA 62.686 66.667 0.00 0.00 0.00 4.30
1620 1740 0.322187 ACCACTGTATTTGCCCCGTC 60.322 55.000 0.00 0.00 0.00 4.79
1774 1894 3.010420 GAGGAGCACAAGGGTAATTGTC 58.990 50.000 0.00 0.00 41.41 3.18
1793 1913 6.461110 TTGTCTCTATACTTTTACCTCCGG 57.539 41.667 0.00 0.00 0.00 5.14
1816 1943 5.691754 GGCTTTGACTAACCACTGAAAATTG 59.308 40.000 0.00 0.00 0.00 2.32
1955 2082 4.839121 AGGTTTATGCGGATTACACTTCA 58.161 39.130 0.00 0.00 0.00 3.02
1956 2083 5.437060 AGGTTTATGCGGATTACACTTCAT 58.563 37.500 0.00 0.00 0.00 2.57
2003 2130 4.594920 CCTATGTCTGATCCACAGGGTAAT 59.405 45.833 0.00 0.00 45.76 1.89
2005 2132 5.552870 ATGTCTGATCCACAGGGTAATAC 57.447 43.478 0.00 0.00 45.76 1.89
2009 2136 5.070446 GTCTGATCCACAGGGTAATACATGA 59.930 44.000 0.00 0.00 45.76 3.07
2038 2165 7.709182 GGTTTTTATCAGTTTTGCCACTAGTTT 59.291 33.333 0.00 0.00 0.00 2.66
2061 2188 4.910195 TGTCACTCTACTCAATTTGCCAT 58.090 39.130 0.00 0.00 0.00 4.40
2083 2332 6.369065 CCATTAGAAGTTTCAACTAGCGTTCT 59.631 38.462 0.00 0.00 38.57 3.01
2107 2356 5.009710 TCTCTACAAGTCACTGTAACCTGTG 59.990 44.000 0.00 0.00 40.71 3.66
2189 2438 3.227250 GGGTGATCGAATCCCCGT 58.773 61.111 10.59 0.00 35.52 5.28
2448 2707 9.174166 ACAACTAGTGACAAAACTGATAAAACT 57.826 29.630 0.00 0.00 0.00 2.66
2554 2813 5.573146 GTTGATGGACTAATAAGCTTGTGC 58.427 41.667 9.86 4.12 40.05 4.57
2580 2839 2.092753 AGTGGTCAGACATGGGCTAATG 60.093 50.000 2.17 0.11 0.00 1.90
2625 2884 5.048782 CACATTGGGCATATGTATACACACC 60.049 44.000 7.96 7.18 37.54 4.16
2633 2892 5.694458 GCATATGTATACACACCACAATCGA 59.306 40.000 7.96 0.00 37.54 3.59
2734 2993 6.032094 CCTGATTGATCATTTTGTAGCACAC 58.968 40.000 0.00 0.00 36.02 3.82
2804 3063 1.376609 CCTGCATACCCGGCTTGTTC 61.377 60.000 0.00 0.00 0.00 3.18
3067 3326 3.456277 ACTCATCCTCGCCTCCTTTATTT 59.544 43.478 0.00 0.00 0.00 1.40
3281 3542 2.422803 GCCACATATAAGCCCAGAACCA 60.423 50.000 0.00 0.00 0.00 3.67
3568 3829 7.506114 AGAAATATAAGGGCGTTTAGATCACA 58.494 34.615 0.00 0.00 0.00 3.58
3572 3833 3.134574 AGGGCGTTTAGATCACAACAA 57.865 42.857 0.00 0.00 0.00 2.83
3573 3834 2.812011 AGGGCGTTTAGATCACAACAAC 59.188 45.455 0.00 0.00 0.00 3.32
3574 3835 2.550606 GGGCGTTTAGATCACAACAACA 59.449 45.455 0.00 0.00 0.00 3.33
3575 3836 3.003897 GGGCGTTTAGATCACAACAACAA 59.996 43.478 0.00 0.00 0.00 2.83
3576 3837 3.972502 GGCGTTTAGATCACAACAACAAC 59.027 43.478 0.00 0.00 0.00 3.32
3578 3839 5.031578 GCGTTTAGATCACAACAACAACAA 58.968 37.500 0.00 0.00 0.00 2.83
3580 3841 6.024664 CGTTTAGATCACAACAACAACAACA 58.975 36.000 0.00 0.00 0.00 3.33
3582 3843 7.460896 CGTTTAGATCACAACAACAACAACAAC 60.461 37.037 0.00 0.00 0.00 3.32
3584 3845 5.777802 AGATCACAACAACAACAACAACAA 58.222 33.333 0.00 0.00 0.00 2.83
3585 3846 5.633182 AGATCACAACAACAACAACAACAAC 59.367 36.000 0.00 0.00 0.00 3.32
3586 3847 4.682787 TCACAACAACAACAACAACAACA 58.317 34.783 0.00 0.00 0.00 3.33
3587 3848 5.109210 TCACAACAACAACAACAACAACAA 58.891 33.333 0.00 0.00 0.00 2.83
3589 3850 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
3590 3851 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
3591 3852 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
3592 3853 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
3593 3854 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
3594 3855 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
3595 3856 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
3596 3857 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
3597 3858 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
3598 3859 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
3599 3860 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
3600 3861 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
3601 3862 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
3602 3863 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
3603 3864 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
3604 3865 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
3605 3866 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
3606 3867 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
3607 3868 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
3608 3869 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
3609 3870 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
3610 3871 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
3611 3872 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
3613 3874 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
3615 3876 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
3616 3877 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
3617 3878 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
3619 3880 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
3628 3889 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
3630 3891 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
3631 3892 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
3632 3893 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
3633 3894 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
3634 3895 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
3635 3896 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
3636 3897 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
3637 3898 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
3638 3899 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
3639 3900 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
3653 3914 3.741805 GTGAAACCCATAAGTTCTCGC 57.258 47.619 0.00 0.00 0.00 5.03
3654 3915 2.093783 GTGAAACCCATAAGTTCTCGCG 59.906 50.000 0.00 0.00 0.00 5.87
3655 3916 2.028839 TGAAACCCATAAGTTCTCGCGA 60.029 45.455 9.26 9.26 0.00 5.87
3657 3918 0.175073 ACCCATAAGTTCTCGCGACC 59.825 55.000 3.71 0.00 0.00 4.79
3659 3920 1.404986 CCCATAAGTTCTCGCGACCAA 60.405 52.381 3.71 0.00 0.00 3.67
3660 3921 1.659098 CCATAAGTTCTCGCGACCAAC 59.341 52.381 3.71 11.50 0.00 3.77
3661 3922 2.607187 CATAAGTTCTCGCGACCAACT 58.393 47.619 18.71 18.71 31.48 3.16
3662 3923 2.342910 TAAGTTCTCGCGACCAACTC 57.657 50.000 22.68 5.36 29.85 3.01
3663 3924 0.387929 AAGTTCTCGCGACCAACTCA 59.612 50.000 22.68 0.00 29.85 3.41
3664 3925 0.603569 AGTTCTCGCGACCAACTCAT 59.396 50.000 18.71 2.77 0.00 2.90
3665 3926 0.716108 GTTCTCGCGACCAACTCATG 59.284 55.000 3.71 0.00 0.00 3.07
3673 3934 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
3675 3936 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
3676 3937 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
3677 3938 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
3679 3940 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
3680 3941 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
3681 3942 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
3682 3943 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
3683 3944 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
3684 3945 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
3685 3946 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
3686 3947 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
3687 3948 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
3688 3949 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
3689 3950 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
3690 3951 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
3691 3952 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
3692 3953 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
3694 3955 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
3696 3957 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
3698 3959 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
3699 3960 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
3701 3962 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
3702 3963 3.570212 AAGCTTCCACGCACCCCT 61.570 61.111 0.00 0.00 0.00 4.79
3704 3965 4.643387 GCTTCCACGCACCCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
3706 3967 3.901797 CTTCCACGCACCCCTGTCC 62.902 68.421 0.00 0.00 0.00 4.02
3708 3969 4.033776 CCACGCACCCCTGTCCAT 62.034 66.667 0.00 0.00 0.00 3.41
3709 3970 2.665089 CCACGCACCCCTGTCCATA 61.665 63.158 0.00 0.00 0.00 2.74
3710 3971 1.153369 CACGCACCCCTGTCCATAG 60.153 63.158 0.00 0.00 0.00 2.23
3711 3972 2.203070 CGCACCCCTGTCCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
3712 3973 2.735772 CGCACCCCTGTCCATAGCT 61.736 63.158 0.00 0.00 0.00 3.32
3714 3975 0.394565 GCACCCCTGTCCATAGCTAG 59.605 60.000 0.00 0.00 0.00 3.42
3715 3976 1.794714 CACCCCTGTCCATAGCTAGT 58.205 55.000 0.00 0.00 0.00 2.57
3716 3977 2.119495 CACCCCTGTCCATAGCTAGTT 58.881 52.381 0.00 0.00 0.00 2.24
3717 3978 2.103263 CACCCCTGTCCATAGCTAGTTC 59.897 54.545 0.00 0.00 0.00 3.01
3718 3979 2.022918 ACCCCTGTCCATAGCTAGTTCT 60.023 50.000 0.00 0.00 0.00 3.01
3719 3980 3.041946 CCCCTGTCCATAGCTAGTTCTT 58.958 50.000 0.00 0.00 0.00 2.52
3720 3981 3.456277 CCCCTGTCCATAGCTAGTTCTTT 59.544 47.826 0.00 0.00 0.00 2.52
3721 3982 4.446371 CCCTGTCCATAGCTAGTTCTTTG 58.554 47.826 0.00 0.00 0.00 2.77
3722 3983 4.446371 CCTGTCCATAGCTAGTTCTTTGG 58.554 47.826 0.00 0.65 36.78 3.28
3724 3985 4.832248 TGTCCATAGCTAGTTCTTTGGTG 58.168 43.478 8.33 0.00 36.79 4.17
3726 3987 5.189736 TGTCCATAGCTAGTTCTTTGGTGAT 59.810 40.000 8.33 0.00 36.79 3.06
3727 3988 6.382859 TGTCCATAGCTAGTTCTTTGGTGATA 59.617 38.462 8.33 0.00 36.79 2.15
3728 3989 6.702282 GTCCATAGCTAGTTCTTTGGTGATAC 59.298 42.308 8.33 0.00 36.79 2.24
3730 3991 6.926272 CCATAGCTAGTTCTTTGGTGATACTC 59.074 42.308 0.00 0.00 32.65 2.59
3731 3992 5.346181 AGCTAGTTCTTTGGTGATACTCC 57.654 43.478 0.00 0.00 0.00 3.85
3734 3995 6.069963 AGCTAGTTCTTTGGTGATACTCCAAT 60.070 38.462 6.20 0.00 43.25 3.16
3735 3996 6.258947 GCTAGTTCTTTGGTGATACTCCAATC 59.741 42.308 6.20 0.00 43.25 2.67
3738 3999 5.779241 TCTTTGGTGATACTCCAATCCTT 57.221 39.130 6.20 0.00 43.25 3.36
3739 4000 5.745227 TCTTTGGTGATACTCCAATCCTTC 58.255 41.667 6.20 0.00 43.25 3.46
3740 4001 5.250543 TCTTTGGTGATACTCCAATCCTTCA 59.749 40.000 6.20 0.00 43.25 3.02
3744 4005 4.443598 GGTGATACTCCAATCCTTCAGGTC 60.444 50.000 0.00 0.00 36.34 3.85
3745 4006 4.407296 GTGATACTCCAATCCTTCAGGTCT 59.593 45.833 0.00 0.00 36.34 3.85
3746 4007 4.651503 TGATACTCCAATCCTTCAGGTCTC 59.348 45.833 0.00 0.00 36.34 3.36
3747 4008 3.197927 ACTCCAATCCTTCAGGTCTCT 57.802 47.619 0.00 0.00 36.34 3.10
3748 4009 3.103742 ACTCCAATCCTTCAGGTCTCTC 58.896 50.000 0.00 0.00 36.34 3.20
3749 4010 3.245948 ACTCCAATCCTTCAGGTCTCTCT 60.246 47.826 0.00 0.00 36.34 3.10
3750 4011 3.774216 CTCCAATCCTTCAGGTCTCTCTT 59.226 47.826 0.00 0.00 36.34 2.85
3751 4012 4.947883 TCCAATCCTTCAGGTCTCTCTTA 58.052 43.478 0.00 0.00 36.34 2.10
3752 4013 5.342017 TCCAATCCTTCAGGTCTCTCTTAA 58.658 41.667 0.00 0.00 36.34 1.85
3753 4014 5.187967 TCCAATCCTTCAGGTCTCTCTTAAC 59.812 44.000 0.00 0.00 36.34 2.01
3754 4015 4.993029 ATCCTTCAGGTCTCTCTTAACG 57.007 45.455 0.00 0.00 36.34 3.18
3755 4016 3.090037 TCCTTCAGGTCTCTCTTAACGG 58.910 50.000 0.00 0.00 36.34 4.44
3756 4017 3.090037 CCTTCAGGTCTCTCTTAACGGA 58.910 50.000 0.00 0.00 0.00 4.69
3757 4018 3.119424 CCTTCAGGTCTCTCTTAACGGAC 60.119 52.174 0.00 0.00 0.00 4.79
3760 4021 2.424246 CAGGTCTCTCTTAACGGACTCC 59.576 54.545 0.00 0.00 0.00 3.85
3762 4023 2.684374 GGTCTCTCTTAACGGACTCCTC 59.316 54.545 0.00 0.00 0.00 3.71
3763 4024 2.684374 GTCTCTCTTAACGGACTCCTCC 59.316 54.545 0.00 0.00 0.00 4.30
3764 4025 2.025898 CTCTCTTAACGGACTCCTCCC 58.974 57.143 0.00 0.00 31.93 4.30
3765 4026 1.356738 TCTCTTAACGGACTCCTCCCA 59.643 52.381 0.00 0.00 31.93 4.37
3766 4027 2.024273 TCTCTTAACGGACTCCTCCCAT 60.024 50.000 0.00 0.00 31.93 4.00
3767 4028 2.101582 CTCTTAACGGACTCCTCCCATG 59.898 54.545 0.00 0.00 31.93 3.66
3768 4029 1.831736 CTTAACGGACTCCTCCCATGT 59.168 52.381 0.00 0.00 31.93 3.21
3769 4030 1.481871 TAACGGACTCCTCCCATGTC 58.518 55.000 0.00 0.00 31.93 3.06
3770 4031 0.544357 AACGGACTCCTCCCATGTCA 60.544 55.000 0.00 0.00 31.93 3.58
3771 4032 0.544357 ACGGACTCCTCCCATGTCAA 60.544 55.000 0.00 0.00 31.93 3.18
3773 4034 1.210478 CGGACTCCTCCCATGTCAAAT 59.790 52.381 0.00 0.00 31.93 2.32
3774 4035 2.356125 CGGACTCCTCCCATGTCAAATT 60.356 50.000 0.00 0.00 31.93 1.82
3775 4036 3.282885 GGACTCCTCCCATGTCAAATTC 58.717 50.000 0.00 0.00 32.84 2.17
3776 4037 2.939103 GACTCCTCCCATGTCAAATTCG 59.061 50.000 0.00 0.00 0.00 3.34
3777 4038 2.292267 CTCCTCCCATGTCAAATTCGG 58.708 52.381 0.00 0.00 0.00 4.30
3779 4040 2.017049 CCTCCCATGTCAAATTCGGTC 58.983 52.381 0.00 0.00 0.00 4.79
3780 4041 2.356125 CCTCCCATGTCAAATTCGGTCT 60.356 50.000 0.00 0.00 0.00 3.85
3781 4042 3.118408 CCTCCCATGTCAAATTCGGTCTA 60.118 47.826 0.00 0.00 0.00 2.59
3782 4043 3.869065 TCCCATGTCAAATTCGGTCTAC 58.131 45.455 0.00 0.00 0.00 2.59
3783 4044 2.943033 CCCATGTCAAATTCGGTCTACC 59.057 50.000 0.00 0.00 0.00 3.18
3784 4045 2.943033 CCATGTCAAATTCGGTCTACCC 59.057 50.000 0.00 0.00 0.00 3.69
3785 4046 3.370527 CCATGTCAAATTCGGTCTACCCT 60.371 47.826 0.00 0.00 0.00 4.34
3786 4047 3.328382 TGTCAAATTCGGTCTACCCTG 57.672 47.619 0.00 0.00 0.00 4.45
3787 4048 2.901192 TGTCAAATTCGGTCTACCCTGA 59.099 45.455 0.00 0.00 0.00 3.86
3797 4058 3.088789 GTCTACCCTGACCTCTCTTGA 57.911 52.381 0.00 0.00 0.00 3.02
3798 4059 2.756207 GTCTACCCTGACCTCTCTTGAC 59.244 54.545 0.00 0.00 0.00 3.18
3799 4060 2.378886 TCTACCCTGACCTCTCTTGACA 59.621 50.000 0.00 0.00 0.00 3.58
3802 4063 2.569404 ACCCTGACCTCTCTTGACATTC 59.431 50.000 0.00 0.00 0.00 2.67
3803 4064 2.836981 CCCTGACCTCTCTTGACATTCT 59.163 50.000 0.00 0.00 0.00 2.40
3805 4066 3.118811 CCTGACCTCTCTTGACATTCTCC 60.119 52.174 0.00 0.00 0.00 3.71
3808 4069 1.205655 CCTCTCTTGACATTCTCCGCA 59.794 52.381 0.00 0.00 0.00 5.69
3809 4070 2.266554 CTCTCTTGACATTCTCCGCAC 58.733 52.381 0.00 0.00 0.00 5.34
3811 4072 1.014044 TCTTGACATTCTCCGCACGC 61.014 55.000 0.00 0.00 0.00 5.34
3812 4073 1.005037 TTGACATTCTCCGCACGCT 60.005 52.632 0.00 0.00 0.00 5.07
3814 4075 0.602638 TGACATTCTCCGCACGCTTT 60.603 50.000 0.00 0.00 0.00 3.51
3815 4076 1.337354 TGACATTCTCCGCACGCTTTA 60.337 47.619 0.00 0.00 0.00 1.85
3816 4077 1.324736 GACATTCTCCGCACGCTTTAG 59.675 52.381 0.00 0.00 0.00 1.85
3817 4078 0.026803 CATTCTCCGCACGCTTTAGC 59.973 55.000 0.00 0.00 37.78 3.09
3818 4079 1.090052 ATTCTCCGCACGCTTTAGCC 61.090 55.000 0.00 0.00 37.91 3.93
3821 4082 3.849953 CCGCACGCTTTAGCCGTC 61.850 66.667 0.00 0.00 37.91 4.79
3822 4083 3.849953 CGCACGCTTTAGCCGTCC 61.850 66.667 0.00 0.00 37.91 4.79
3823 4084 3.849953 GCACGCTTTAGCCGTCCG 61.850 66.667 0.00 0.00 37.91 4.79
3824 4085 3.849953 CACGCTTTAGCCGTCCGC 61.850 66.667 0.00 0.00 37.91 5.54
3833 4094 3.264897 GCCGTCCGCTATGCACTG 61.265 66.667 0.00 0.00 0.00 3.66
3834 4095 2.586079 CCGTCCGCTATGCACTGG 60.586 66.667 0.00 0.00 0.00 4.00
3836 4097 1.589993 CGTCCGCTATGCACTGGAG 60.590 63.158 0.00 0.00 0.00 3.86
3837 4098 1.884926 GTCCGCTATGCACTGGAGC 60.885 63.158 0.00 0.00 0.00 4.70
3840 4101 1.156645 CCGCTATGCACTGGAGCTTC 61.157 60.000 9.31 0.00 33.91 3.86
3842 4103 1.297664 GCTATGCACTGGAGCTTCTG 58.702 55.000 0.00 0.00 33.28 3.02
3843 4104 1.950828 CTATGCACTGGAGCTTCTGG 58.049 55.000 3.68 0.00 34.99 3.86
3844 4105 1.483827 CTATGCACTGGAGCTTCTGGA 59.516 52.381 3.68 0.00 34.99 3.86
3845 4106 0.252479 ATGCACTGGAGCTTCTGGAG 59.748 55.000 3.68 0.00 34.99 3.86
3846 4107 1.078567 GCACTGGAGCTTCTGGAGG 60.079 63.158 3.68 0.00 0.00 4.30
3847 4108 1.078567 CACTGGAGCTTCTGGAGGC 60.079 63.158 3.68 0.00 0.00 4.70
3849 4110 1.994507 CTGGAGCTTCTGGAGGCCT 60.995 63.158 3.86 3.86 33.44 5.19
3850 4111 2.254737 CTGGAGCTTCTGGAGGCCTG 62.255 65.000 12.00 0.00 33.44 4.85
3851 4112 2.297129 GGAGCTTCTGGAGGCCTGT 61.297 63.158 12.00 0.00 33.44 4.00
3852 4113 1.078567 GAGCTTCTGGAGGCCTGTG 60.079 63.158 12.00 0.00 33.44 3.66
3853 4114 2.749441 GCTTCTGGAGGCCTGTGC 60.749 66.667 12.00 0.00 0.00 4.57
3855 4116 1.376942 CTTCTGGAGGCCTGTGCTG 60.377 63.158 12.00 0.00 37.74 4.41
3857 4118 1.418097 TTCTGGAGGCCTGTGCTGAA 61.418 55.000 12.00 5.79 37.74 3.02
3858 4119 1.203441 TCTGGAGGCCTGTGCTGAAT 61.203 55.000 12.00 0.00 37.74 2.57
3860 4121 1.142465 CTGGAGGCCTGTGCTGAATAT 59.858 52.381 12.00 0.00 37.74 1.28
3861 4122 1.134007 TGGAGGCCTGTGCTGAATATG 60.134 52.381 12.00 0.00 37.74 1.78
3862 4123 0.950116 GAGGCCTGTGCTGAATATGC 59.050 55.000 12.00 0.00 37.74 3.14
3863 4124 0.466922 AGGCCTGTGCTGAATATGCC 60.467 55.000 3.11 0.00 37.74 4.40
3864 4125 1.458639 GGCCTGTGCTGAATATGCCC 61.459 60.000 0.00 0.00 37.74 5.36
3865 4126 0.752743 GCCTGTGCTGAATATGCCCA 60.753 55.000 0.00 0.00 33.53 5.36
3866 4127 1.766494 CCTGTGCTGAATATGCCCAA 58.234 50.000 0.00 0.00 0.00 4.12
3867 4128 2.101783 CCTGTGCTGAATATGCCCAAA 58.898 47.619 0.00 0.00 0.00 3.28
3868 4129 2.159198 CCTGTGCTGAATATGCCCAAAC 60.159 50.000 0.00 0.00 0.00 2.93
3870 4131 1.824230 GTGCTGAATATGCCCAAACCA 59.176 47.619 0.00 0.00 0.00 3.67
3872 4133 2.694628 TGCTGAATATGCCCAAACCATC 59.305 45.455 0.00 0.00 0.00 3.51
3873 4134 2.961062 GCTGAATATGCCCAAACCATCT 59.039 45.455 0.00 0.00 0.00 2.90
3874 4135 3.005155 GCTGAATATGCCCAAACCATCTC 59.995 47.826 0.00 0.00 0.00 2.75
3875 4136 4.209538 CTGAATATGCCCAAACCATCTCA 58.790 43.478 0.00 0.00 0.00 3.27
3876 4137 4.209538 TGAATATGCCCAAACCATCTCAG 58.790 43.478 0.00 0.00 0.00 3.35
3878 4139 2.134789 ATGCCCAAACCATCTCAGAC 57.865 50.000 0.00 0.00 0.00 3.51
3879 4140 0.321564 TGCCCAAACCATCTCAGACG 60.322 55.000 0.00 0.00 0.00 4.18
3880 4141 0.036388 GCCCAAACCATCTCAGACGA 60.036 55.000 0.00 0.00 0.00 4.20
3882 4143 2.283298 CCCAAACCATCTCAGACGATG 58.717 52.381 0.00 0.00 40.32 3.84
3883 4144 2.355108 CCCAAACCATCTCAGACGATGT 60.355 50.000 0.00 0.00 39.26 3.06
3884 4145 3.338249 CCAAACCATCTCAGACGATGTT 58.662 45.455 0.00 0.00 39.26 2.71
3885 4146 3.125829 CCAAACCATCTCAGACGATGTTG 59.874 47.826 0.00 7.25 39.26 3.33
3886 4147 2.680312 ACCATCTCAGACGATGTTGG 57.320 50.000 0.00 0.39 39.26 3.77
3887 4148 2.179427 ACCATCTCAGACGATGTTGGA 58.821 47.619 0.00 0.00 39.26 3.53
3888 4149 2.093973 ACCATCTCAGACGATGTTGGAC 60.094 50.000 0.00 0.00 39.26 4.02
3889 4150 2.094026 CCATCTCAGACGATGTTGGACA 60.094 50.000 0.00 0.00 39.26 4.02
3892 4153 1.728971 CTCAGACGATGTTGGACAAGC 59.271 52.381 0.00 0.00 0.00 4.01
3893 4154 1.344438 TCAGACGATGTTGGACAAGCT 59.656 47.619 0.00 0.00 0.00 3.74
3894 4155 2.146342 CAGACGATGTTGGACAAGCTT 58.854 47.619 0.00 0.00 0.00 3.74
3895 4156 2.158449 CAGACGATGTTGGACAAGCTTC 59.842 50.000 0.00 0.00 0.00 3.86
3897 4158 2.413453 GACGATGTTGGACAAGCTTCTC 59.587 50.000 0.00 0.00 0.00 2.87
3899 4160 3.070018 CGATGTTGGACAAGCTTCTCTT 58.930 45.455 0.00 0.00 34.78 2.85
3900 4161 3.124297 CGATGTTGGACAAGCTTCTCTTC 59.876 47.826 0.00 0.00 31.27 2.87
3901 4162 3.558931 TGTTGGACAAGCTTCTCTTCA 57.441 42.857 0.00 0.00 31.27 3.02
3902 4163 3.884895 TGTTGGACAAGCTTCTCTTCAA 58.115 40.909 0.00 0.00 31.27 2.69
3903 4164 4.464008 TGTTGGACAAGCTTCTCTTCAAT 58.536 39.130 0.00 0.00 31.27 2.57
4086 4610 5.925506 TCGAGGGTATTGTCATTTGTCTA 57.074 39.130 0.00 0.00 0.00 2.59
4138 4662 7.356680 TGGATTGATTGATCCCACTTTATTCT 58.643 34.615 1.74 0.00 44.12 2.40
4167 4691 3.512724 CCACTTGATGCCTTTTGATCCTT 59.487 43.478 0.00 0.00 0.00 3.36
4194 4718 5.815233 ATCAGACATCGGAATATGAAGGT 57.185 39.130 0.00 0.00 0.00 3.50
4200 4724 5.601662 ACATCGGAATATGAAGGTACTGTG 58.398 41.667 0.00 0.00 40.86 3.66
4339 4865 3.758023 TCATTATGTGCTTCAACCAGTGG 59.242 43.478 7.91 7.91 0.00 4.00
4408 4934 9.068008 GTTGTGATTGTTTAATTACCATTACCG 57.932 33.333 0.00 0.00 33.24 4.02
4451 4977 1.539388 TGGCTTATTTGTTGTGCCTCG 59.461 47.619 0.00 0.00 43.57 4.63
4480 5006 7.926018 TGTAAAGAATGTCGCATATGATGTACT 59.074 33.333 6.97 0.00 0.00 2.73
4541 5067 5.137551 GCATTTCCCTAAATACCTAGGCAA 58.862 41.667 9.30 0.00 37.69 4.52
4588 5114 6.922957 TGTTCAAAATCAAGGAGTTTATGCAC 59.077 34.615 0.00 0.00 28.72 4.57
4811 5337 7.040478 GGTGGCTGTAATTATAAGATGCATTGA 60.040 37.037 0.00 0.00 0.00 2.57
4899 5425 7.280428 CAGATACTTGATTGGATCTATGCATCC 59.720 40.741 0.19 0.00 42.68 3.51
5009 5535 3.197766 TCTCTTGGGAGTAATTCGCATGT 59.802 43.478 0.00 0.00 46.65 3.21
5026 5553 3.602062 GCATGTCCGTTTTTACGATGTTG 59.398 43.478 0.00 0.00 34.64 3.33
5108 5635 8.553459 TGTCATCCTTGTCTCTTCTTTATTTC 57.447 34.615 0.00 0.00 0.00 2.17
5260 5787 6.282199 ACTACATACGGACTGAAATGAGTT 57.718 37.500 7.93 0.00 0.00 3.01
5372 5900 6.154534 TGTTGTATAGGTTGTAGTGAGCTCAT 59.845 38.462 21.47 11.46 0.00 2.90
5491 6026 2.109229 AGGTGGGGATCCTATCACTG 57.891 55.000 22.73 0.00 33.04 3.66
5539 6074 2.198334 AAGGGCCAGCTAGGAACTAT 57.802 50.000 6.18 0.00 41.70 2.12
5628 6163 1.710244 TCCAAGGCTCTGGAAAATCCA 59.290 47.619 13.70 0.00 45.98 3.41
5636 6171 3.065462 TGGAAAATCCAAGGTGGGC 57.935 52.632 0.00 0.00 45.00 5.36
5643 6178 2.788230 ATCCAAGGTGGGCCTGGAGA 62.788 60.000 16.37 1.79 46.33 3.71
5646 6181 2.539081 AAGGTGGGCCTGGAGAACC 61.539 63.158 4.53 2.08 46.33 3.62
5656 6191 4.223255 GGGCCTGGAGAACCTTATATACTC 59.777 50.000 0.84 0.00 37.04 2.59
5657 6192 4.223255 GGCCTGGAGAACCTTATATACTCC 59.777 50.000 0.00 0.00 44.90 3.85
5658 6193 5.088026 GCCTGGAGAACCTTATATACTCCT 58.912 45.833 14.30 0.00 44.91 3.69
5659 6194 5.544562 GCCTGGAGAACCTTATATACTCCTT 59.455 44.000 14.30 0.00 44.91 3.36
5660 6195 6.295405 GCCTGGAGAACCTTATATACTCCTTC 60.295 46.154 14.30 1.19 44.91 3.46
5661 6196 6.211785 CCTGGAGAACCTTATATACTCCTTCC 59.788 46.154 14.30 5.23 44.91 3.46
5662 6197 5.773680 TGGAGAACCTTATATACTCCTTCCG 59.226 44.000 14.30 0.00 44.91 4.30
5663 6198 5.774184 GGAGAACCTTATATACTCCTTCCGT 59.226 44.000 0.00 0.00 42.41 4.69
5664 6199 6.267242 GGAGAACCTTATATACTCCTTCCGTT 59.733 42.308 0.00 0.00 42.41 4.44
5665 6200 7.201983 GGAGAACCTTATATACTCCTTCCGTTT 60.202 40.741 0.00 0.00 42.41 3.60
5666 6201 7.724287 AGAACCTTATATACTCCTTCCGTTTC 58.276 38.462 0.00 0.00 0.00 2.78
5667 6202 7.564292 AGAACCTTATATACTCCTTCCGTTTCT 59.436 37.037 0.00 0.00 0.00 2.52
5668 6203 7.672122 ACCTTATATACTCCTTCCGTTTCTT 57.328 36.000 0.00 0.00 0.00 2.52
5669 6204 8.087303 ACCTTATATACTCCTTCCGTTTCTTT 57.913 34.615 0.00 0.00 0.00 2.52
5670 6205 8.546322 ACCTTATATACTCCTTCCGTTTCTTTT 58.454 33.333 0.00 0.00 0.00 2.27
5671 6206 9.392259 CCTTATATACTCCTTCCGTTTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
5675 6210 7.902387 ATACTCCTTCCGTTTCTTTTTAGTC 57.098 36.000 0.00 0.00 0.00 2.59
5676 6211 5.926663 ACTCCTTCCGTTTCTTTTTAGTCT 58.073 37.500 0.00 0.00 0.00 3.24
5677 6212 5.758784 ACTCCTTCCGTTTCTTTTTAGTCTG 59.241 40.000 0.00 0.00 0.00 3.51
5678 6213 4.514066 TCCTTCCGTTTCTTTTTAGTCTGC 59.486 41.667 0.00 0.00 0.00 4.26
5679 6214 4.274950 CCTTCCGTTTCTTTTTAGTCTGCA 59.725 41.667 0.00 0.00 0.00 4.41
5680 6215 5.048713 CCTTCCGTTTCTTTTTAGTCTGCAT 60.049 40.000 0.00 0.00 0.00 3.96
5681 6216 6.148811 CCTTCCGTTTCTTTTTAGTCTGCATA 59.851 38.462 0.00 0.00 0.00 3.14
5682 6217 7.148239 CCTTCCGTTTCTTTTTAGTCTGCATAT 60.148 37.037 0.00 0.00 0.00 1.78
5683 6218 8.780846 TTCCGTTTCTTTTTAGTCTGCATATA 57.219 30.769 0.00 0.00 0.00 0.86
5684 6219 8.780846 TCCGTTTCTTTTTAGTCTGCATATAA 57.219 30.769 0.00 0.00 0.00 0.98
5685 6220 8.879759 TCCGTTTCTTTTTAGTCTGCATATAAG 58.120 33.333 0.00 0.00 0.00 1.73
5686 6221 8.122952 CCGTTTCTTTTTAGTCTGCATATAAGG 58.877 37.037 0.00 0.00 0.00 2.69
5687 6222 8.665685 CGTTTCTTTTTAGTCTGCATATAAGGT 58.334 33.333 0.00 0.00 0.00 3.50
5691 6226 8.956426 TCTTTTTAGTCTGCATATAAGGTTTGG 58.044 33.333 0.00 0.00 0.00 3.28
5692 6227 8.644374 TTTTTAGTCTGCATATAAGGTTTGGT 57.356 30.769 0.00 0.00 0.00 3.67
5693 6228 7.859325 TTTAGTCTGCATATAAGGTTTGGTC 57.141 36.000 0.00 0.00 0.00 4.02
5694 6229 5.435686 AGTCTGCATATAAGGTTTGGTCA 57.564 39.130 0.00 0.00 0.00 4.02
5695 6230 5.815581 AGTCTGCATATAAGGTTTGGTCAA 58.184 37.500 0.00 0.00 0.00 3.18
5696 6231 6.245408 AGTCTGCATATAAGGTTTGGTCAAA 58.755 36.000 0.00 0.00 0.00 2.69
5697 6232 6.375455 AGTCTGCATATAAGGTTTGGTCAAAG 59.625 38.462 0.00 0.00 0.00 2.77
5698 6233 6.151144 GTCTGCATATAAGGTTTGGTCAAAGT 59.849 38.462 0.00 0.00 0.00 2.66
5699 6234 6.374333 TCTGCATATAAGGTTTGGTCAAAGTC 59.626 38.462 0.00 0.00 0.00 3.01
5700 6235 6.007076 TGCATATAAGGTTTGGTCAAAGTCA 58.993 36.000 0.00 0.00 0.00 3.41
5701 6236 6.491745 TGCATATAAGGTTTGGTCAAAGTCAA 59.508 34.615 0.00 0.00 0.00 3.18
5702 6237 7.014711 TGCATATAAGGTTTGGTCAAAGTCAAA 59.985 33.333 0.00 0.00 0.00 2.69
5703 6238 7.328493 GCATATAAGGTTTGGTCAAAGTCAAAC 59.672 37.037 9.59 9.59 46.92 2.93
5704 6239 8.576442 CATATAAGGTTTGGTCAAAGTCAAACT 58.424 33.333 15.43 3.50 46.86 2.66
5705 6240 5.738619 AAGGTTTGGTCAAAGTCAAACTT 57.261 34.783 15.43 7.93 46.86 2.66
5855 6390 9.508642 TTTTTCCTACAAAATTGGTCAAACTTT 57.491 25.926 0.00 0.00 0.00 2.66
5857 6392 9.589111 TTTCCTACAAAATTGGTCAAACTTTAC 57.411 29.630 0.00 0.00 0.00 2.01
5858 6393 8.294954 TCCTACAAAATTGGTCAAACTTTACA 57.705 30.769 0.00 0.00 0.00 2.41
5859 6394 8.750298 TCCTACAAAATTGGTCAAACTTTACAA 58.250 29.630 0.00 0.00 0.00 2.41
5860 6395 9.372369 CCTACAAAATTGGTCAAACTTTACAAA 57.628 29.630 0.00 0.00 0.00 2.83
5880 6415 5.357742 AAAGTTTGACTTTGGCCAAATCT 57.642 34.783 30.46 18.63 45.83 2.40
5881 6416 5.357742 AAGTTTGACTTTGGCCAAATCTT 57.642 34.783 30.46 21.31 34.11 2.40
5882 6417 6.478512 AAGTTTGACTTTGGCCAAATCTTA 57.521 33.333 30.46 14.70 34.11 2.10
5883 6418 6.670695 AGTTTGACTTTGGCCAAATCTTAT 57.329 33.333 30.46 14.03 35.14 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.485124 TGTAGTGATGCGGGTGAGAT 58.515 50.000 0.00 0.00 0.00 2.75
1 2 1.262417 TTGTAGTGATGCGGGTGAGA 58.738 50.000 0.00 0.00 0.00 3.27
2 3 1.732259 GTTTGTAGTGATGCGGGTGAG 59.268 52.381 0.00 0.00 0.00 3.51
3 4 1.803334 GTTTGTAGTGATGCGGGTGA 58.197 50.000 0.00 0.00 0.00 4.02
4 5 0.442310 CGTTTGTAGTGATGCGGGTG 59.558 55.000 0.00 0.00 0.00 4.61
5 6 1.296056 GCGTTTGTAGTGATGCGGGT 61.296 55.000 0.00 0.00 0.00 5.28
6 7 1.423845 GCGTTTGTAGTGATGCGGG 59.576 57.895 0.00 0.00 0.00 6.13
7 8 1.019278 AGGCGTTTGTAGTGATGCGG 61.019 55.000 0.00 0.00 0.00 5.69
8 9 0.370273 GAGGCGTTTGTAGTGATGCG 59.630 55.000 0.00 0.00 0.00 4.73
9 10 0.727398 GGAGGCGTTTGTAGTGATGC 59.273 55.000 0.00 0.00 0.00 3.91
10 11 2.002586 CTGGAGGCGTTTGTAGTGATG 58.997 52.381 0.00 0.00 0.00 3.07
11 12 1.676014 GCTGGAGGCGTTTGTAGTGAT 60.676 52.381 0.00 0.00 0.00 3.06
12 13 0.320421 GCTGGAGGCGTTTGTAGTGA 60.320 55.000 0.00 0.00 0.00 3.41
13 14 0.602638 TGCTGGAGGCGTTTGTAGTG 60.603 55.000 0.00 0.00 45.43 2.74
14 15 0.320771 CTGCTGGAGGCGTTTGTAGT 60.321 55.000 0.00 0.00 45.43 2.73
15 16 1.021390 CCTGCTGGAGGCGTTTGTAG 61.021 60.000 2.92 0.00 45.43 2.74
16 17 1.003839 CCTGCTGGAGGCGTTTGTA 60.004 57.895 2.92 0.00 45.43 2.41
17 18 2.281761 CCTGCTGGAGGCGTTTGT 60.282 61.111 2.92 0.00 45.43 2.83
18 19 2.032528 TCCTGCTGGAGGCGTTTG 59.967 61.111 10.78 0.00 45.43 2.93
26 27 3.640407 GTGGTGGCTCCTGCTGGA 61.640 66.667 12.29 12.29 40.69 3.86
39 40 4.856801 GATCCATGGCGGCGTGGT 62.857 66.667 39.58 29.58 36.84 4.16
40 41 4.854924 TGATCCATGGCGGCGTGG 62.855 66.667 37.45 37.45 36.82 4.94
41 42 2.823593 TTGATCCATGGCGGCGTG 60.824 61.111 23.39 23.39 33.14 5.34
42 43 2.514592 CTTGATCCATGGCGGCGT 60.515 61.111 6.96 0.00 33.14 5.68
43 44 3.282157 CCTTGATCCATGGCGGCG 61.282 66.667 6.96 0.51 33.14 6.46
44 45 1.450531 CTTCCTTGATCCATGGCGGC 61.451 60.000 6.96 0.00 33.14 6.53
45 46 0.181114 TCTTCCTTGATCCATGGCGG 59.819 55.000 6.96 2.24 0.00 6.13
46 47 1.590932 CTCTTCCTTGATCCATGGCG 58.409 55.000 6.96 0.00 0.00 5.69
47 48 1.978454 CCTCTTCCTTGATCCATGGC 58.022 55.000 6.96 0.00 0.00 4.40
48 49 1.478288 GGCCTCTTCCTTGATCCATGG 60.478 57.143 4.97 4.97 0.00 3.66
49 50 1.813092 CGGCCTCTTCCTTGATCCATG 60.813 57.143 0.00 0.00 0.00 3.66
50 51 0.471617 CGGCCTCTTCCTTGATCCAT 59.528 55.000 0.00 0.00 0.00 3.41
51 52 1.907739 CGGCCTCTTCCTTGATCCA 59.092 57.895 0.00 0.00 0.00 3.41
52 53 1.524849 GCGGCCTCTTCCTTGATCC 60.525 63.158 0.00 0.00 0.00 3.36
53 54 1.092345 GTGCGGCCTCTTCCTTGATC 61.092 60.000 0.00 0.00 0.00 2.92
54 55 1.078143 GTGCGGCCTCTTCCTTGAT 60.078 57.895 0.00 0.00 0.00 2.57
55 56 2.347490 GTGCGGCCTCTTCCTTGA 59.653 61.111 0.00 0.00 0.00 3.02
56 57 2.747855 GGTGCGGCCTCTTCCTTG 60.748 66.667 0.00 0.00 0.00 3.61
57 58 2.930562 AGGTGCGGCCTCTTCCTT 60.931 61.111 0.00 0.00 46.96 3.36
69 70 4.899239 CCAGATCCGCGGAGGTGC 62.899 72.222 33.87 21.10 41.99 5.01
70 71 4.899239 GCCAGATCCGCGGAGGTG 62.899 72.222 33.87 29.12 41.99 4.00
90 91 4.849329 GACTGTACGGCGGCGAGG 62.849 72.222 38.93 23.63 0.00 4.63
91 92 3.812019 AGACTGTACGGCGGCGAG 61.812 66.667 38.93 26.24 0.00 5.03
92 93 4.111016 CAGACTGTACGGCGGCGA 62.111 66.667 38.93 18.70 0.00 5.54
94 95 4.814294 CCCAGACTGTACGGCGGC 62.814 72.222 13.24 0.00 0.00 6.53
95 96 2.558554 CTTCCCAGACTGTACGGCGG 62.559 65.000 13.24 0.00 0.00 6.13
96 97 1.153823 CTTCCCAGACTGTACGGCG 60.154 63.158 4.80 4.80 0.00 6.46
97 98 1.218316 CCTTCCCAGACTGTACGGC 59.782 63.158 0.23 0.00 0.00 5.68
98 99 0.818296 CTCCTTCCCAGACTGTACGG 59.182 60.000 0.00 0.00 0.00 4.02
99 100 0.818296 CCTCCTTCCCAGACTGTACG 59.182 60.000 0.93 0.00 0.00 3.67
100 101 2.104170 CTCCTCCTTCCCAGACTGTAC 58.896 57.143 0.93 0.00 0.00 2.90
101 102 1.717077 ACTCCTCCTTCCCAGACTGTA 59.283 52.381 0.93 0.00 0.00 2.74
102 103 0.489567 ACTCCTCCTTCCCAGACTGT 59.510 55.000 0.93 0.00 0.00 3.55
103 104 2.383855 CTACTCCTCCTTCCCAGACTG 58.616 57.143 0.00 0.00 0.00 3.51
104 105 1.342574 GCTACTCCTCCTTCCCAGACT 60.343 57.143 0.00 0.00 0.00 3.24
105 106 1.116308 GCTACTCCTCCTTCCCAGAC 58.884 60.000 0.00 0.00 0.00 3.51
106 107 0.032017 GGCTACTCCTCCTTCCCAGA 60.032 60.000 0.00 0.00 0.00 3.86
107 108 1.051556 GGGCTACTCCTCCTTCCCAG 61.052 65.000 0.00 0.00 34.01 4.45
108 109 1.003051 GGGCTACTCCTCCTTCCCA 59.997 63.158 0.00 0.00 34.01 4.37
109 110 0.761323 GAGGGCTACTCCTCCTTCCC 60.761 65.000 0.00 0.00 45.75 3.97
110 111 2.829094 GAGGGCTACTCCTCCTTCC 58.171 63.158 0.00 0.00 45.75 3.46
142 143 2.383855 CTACTCCTCCTTCCCAGACTG 58.616 57.143 0.00 0.00 0.00 3.51
175 176 4.776647 GCCCATGCGTTTGACGGC 62.777 66.667 2.48 0.00 42.82 5.68
177 178 2.034879 AGAGCCCATGCGTTTGACG 61.035 57.895 0.00 0.00 45.88 4.35
178 179 1.503542 CAGAGCCCATGCGTTTGAC 59.496 57.895 0.00 0.00 44.33 3.18
179 180 2.334946 GCAGAGCCCATGCGTTTGA 61.335 57.895 0.00 0.00 44.33 2.69
180 181 2.180017 GCAGAGCCCATGCGTTTG 59.820 61.111 0.00 0.00 44.33 2.93
220 221 4.798682 TCCCTCCTTCCCCTCCGC 62.799 72.222 0.00 0.00 0.00 5.54
298 299 4.453892 CCCCTCGTACCCCCTCGT 62.454 72.222 0.00 0.00 0.00 4.18
300 301 4.085546 ACCCCCTCGTACCCCCTC 62.086 72.222 0.00 0.00 0.00 4.30
301 302 4.085546 GACCCCCTCGTACCCCCT 62.086 72.222 0.00 0.00 0.00 4.79
304 305 3.929723 TTGGGACCCCCTCGTACCC 62.930 68.421 8.45 0.00 45.70 3.69
305 306 2.284847 TTGGGACCCCCTCGTACC 60.285 66.667 8.45 0.00 45.70 3.34
306 307 2.663075 GGTTGGGACCCCCTCGTAC 61.663 68.421 8.45 0.00 45.70 3.67
307 308 2.284847 GGTTGGGACCCCCTCGTA 60.285 66.667 8.45 0.00 45.70 3.43
308 309 4.585216 TGGTTGGGACCCCCTCGT 62.585 66.667 8.45 0.00 45.70 4.18
309 310 3.717294 CTGGTTGGGACCCCCTCG 61.717 72.222 8.45 0.00 45.70 4.63
310 311 3.339093 CCTGGTTGGGACCCCCTC 61.339 72.222 8.45 0.00 45.70 4.30
330 331 1.883084 CATGGTAAGACGCGGAGGC 60.883 63.158 12.47 0.00 0.00 4.70
331 332 1.883084 GCATGGTAAGACGCGGAGG 60.883 63.158 12.47 0.00 0.00 4.30
332 333 1.883084 GGCATGGTAAGACGCGGAG 60.883 63.158 12.47 0.00 0.00 4.63
333 334 2.185867 GGCATGGTAAGACGCGGA 59.814 61.111 12.47 0.00 0.00 5.54
334 335 2.125310 TGGCATGGTAAGACGCGG 60.125 61.111 12.47 0.00 0.00 6.46
335 336 2.461110 GGTGGCATGGTAAGACGCG 61.461 63.158 3.53 3.53 0.00 6.01
336 337 1.078426 AGGTGGCATGGTAAGACGC 60.078 57.895 0.00 0.00 0.00 5.19
337 338 0.462047 GGAGGTGGCATGGTAAGACG 60.462 60.000 0.00 0.00 0.00 4.18
338 339 0.618458 TGGAGGTGGCATGGTAAGAC 59.382 55.000 0.00 0.00 0.00 3.01
397 401 0.037419 AAATCCGCTGCGCCAATTTT 60.037 45.000 18.00 8.10 0.00 1.82
402 406 2.046796 TACAAATCCGCTGCGCCA 60.047 55.556 18.00 5.35 0.00 5.69
435 439 1.131303 TCTTCCATTCCGGTGGTGGT 61.131 55.000 17.68 0.00 40.27 4.16
551 556 5.210430 TGTTTCCTCCCAATGCATATGAAT 58.790 37.500 6.97 0.00 0.00 2.57
564 569 4.618227 CGATCCACATTTTTGTTTCCTCCC 60.618 45.833 0.00 0.00 0.00 4.30
690 770 8.830915 TGAAGTAAAATATCCTCTCTCTCTGT 57.169 34.615 0.00 0.00 0.00 3.41
780 890 1.226746 GACGGTTTGGACTGGACTTG 58.773 55.000 0.00 0.00 36.42 3.16
781 891 0.834612 TGACGGTTTGGACTGGACTT 59.165 50.000 0.00 0.00 36.42 3.01
782 892 0.834612 TTGACGGTTTGGACTGGACT 59.165 50.000 0.00 0.00 36.42 3.85
783 893 1.226746 CTTGACGGTTTGGACTGGAC 58.773 55.000 0.00 0.00 36.42 4.02
784 894 0.834612 ACTTGACGGTTTGGACTGGA 59.165 50.000 0.00 0.00 36.42 3.86
785 895 1.333619 CAACTTGACGGTTTGGACTGG 59.666 52.381 0.00 0.00 36.42 4.00
854 964 0.535102 AACAGAAGGCGTCAAGTGGG 60.535 55.000 2.69 0.00 0.00 4.61
882 992 2.171341 AGAAACGGAAGACTTGGAGC 57.829 50.000 0.00 0.00 0.00 4.70
1692 1812 4.363990 AGCACGTCCTCTGCACCG 62.364 66.667 0.00 0.00 37.08 4.94
1793 1913 6.503524 TCAATTTTCAGTGGTTAGTCAAAGC 58.496 36.000 0.00 0.00 36.08 3.51
1842 1969 6.466885 AGTTCGCAACTGTACCTATAGAAT 57.533 37.500 0.00 0.00 41.01 2.40
1846 1973 5.450965 GCCTAAGTTCGCAACTGTACCTATA 60.451 44.000 2.88 0.00 41.91 1.31
1895 2022 7.316640 AGTCAAGCTCAGTATAAGTGTGTAAG 58.683 38.462 0.00 0.00 0.00 2.34
1899 2026 8.079203 CCTATAGTCAAGCTCAGTATAAGTGTG 58.921 40.741 0.00 0.00 0.00 3.82
1975 2102 5.072329 CCCTGTGGATCAGACATAGGTATTT 59.928 44.000 10.77 0.00 46.27 1.40
2003 2130 7.870445 GCAAAACTGATAAAAACCCTTCATGTA 59.130 33.333 0.00 0.00 0.00 2.29
2005 2132 6.147656 GGCAAAACTGATAAAAACCCTTCATG 59.852 38.462 0.00 0.00 0.00 3.07
2009 2136 5.130311 AGTGGCAAAACTGATAAAAACCCTT 59.870 36.000 0.00 0.00 0.00 3.95
2038 2165 4.713553 TGGCAAATTGAGTAGAGTGACAA 58.286 39.130 0.00 0.00 0.00 3.18
2061 2188 6.746120 AGAGAACGCTAGTTGAAACTTCTAA 58.254 36.000 0.21 0.00 41.34 2.10
2083 2332 5.009710 CACAGGTTACAGTGACTTGTAGAGA 59.990 44.000 12.22 0.00 35.47 3.10
2107 2356 4.282703 TCTGTGTACTGAAAACTAGGACCC 59.717 45.833 0.00 0.00 0.00 4.46
2178 2427 2.569657 CGACACACGGGGATTCGA 59.430 61.111 0.00 0.00 38.46 3.71
2212 2461 9.346725 CCTAATTGTCAGCAAAAGAGAATTAAC 57.653 33.333 0.00 0.00 39.32 2.01
2399 2649 4.826733 TGTCACACTACTCAATTTTGCCAT 59.173 37.500 0.00 0.00 0.00 4.40
2445 2704 9.700831 AATTGATAGGCATTAAAACTAGGAGTT 57.299 29.630 0.00 0.00 40.80 3.01
2446 2705 9.125026 CAATTGATAGGCATTAAAACTAGGAGT 57.875 33.333 0.00 0.00 0.00 3.85
2447 2706 8.078596 GCAATTGATAGGCATTAAAACTAGGAG 58.921 37.037 10.34 0.00 0.00 3.69
2448 2707 7.779798 AGCAATTGATAGGCATTAAAACTAGGA 59.220 33.333 10.34 0.00 0.00 2.94
2554 2813 3.389329 AGCCCATGTCTGACCACTAATAG 59.611 47.826 5.17 0.00 0.00 1.73
2580 2839 5.860182 TGTGTCGTACTAATAACACAAGCTC 59.140 40.000 4.81 0.00 46.43 4.09
2625 2884 7.114670 TGACAGCAAATACAATTTTCGATTGTG 59.885 33.333 12.09 0.00 41.73 3.33
2804 3063 7.166473 CAGCAAGCTTTATTTTTATCTAAGCCG 59.834 37.037 0.00 0.00 41.52 5.52
3067 3326 5.811613 GCATTAATCCATTGCTAAGCACAAA 59.188 36.000 0.00 0.00 38.71 2.83
3180 3441 2.554344 GGTGTCAATACAGGAGGCCAAA 60.554 50.000 5.01 0.00 35.91 3.28
3568 3829 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
3572 3833 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
3573 3834 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
3574 3835 6.422776 TTTGTTGTTGTTGTTGTTGTTGTT 57.577 29.167 0.00 0.00 0.00 2.83
3575 3836 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
3576 3837 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
3578 3839 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
3580 3841 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
3582 3843 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
3584 3845 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
3585 3846 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
3586 3847 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
3587 3848 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
3589 3850 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
3590 3851 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
3591 3852 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
3592 3853 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
3593 3854 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
3594 3855 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
3595 3856 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
3596 3857 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
3597 3858 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
3598 3859 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
3609 3870 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
3610 3871 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
3611 3872 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
3613 3874 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
3615 3876 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
3616 3877 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
3617 3878 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
3619 3880 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
3620 3881 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
3621 3882 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
3622 3883 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
3623 3884 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
3624 3885 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
3625 3886 3.200165 ACTTATGGGTTTCACCTCTAGCC 59.800 47.826 0.00 0.00 38.64 3.93
3626 3887 4.489306 ACTTATGGGTTTCACCTCTAGC 57.511 45.455 0.00 0.00 38.64 3.42
3627 3888 6.301169 AGAACTTATGGGTTTCACCTCTAG 57.699 41.667 0.00 0.00 38.64 2.43
3628 3889 5.105473 CGAGAACTTATGGGTTTCACCTCTA 60.105 44.000 0.00 0.00 38.64 2.43
3630 3891 3.933332 CGAGAACTTATGGGTTTCACCTC 59.067 47.826 0.00 0.00 38.64 3.85
3631 3892 3.868754 GCGAGAACTTATGGGTTTCACCT 60.869 47.826 0.00 0.00 38.64 4.00
3632 3893 2.418976 GCGAGAACTTATGGGTTTCACC 59.581 50.000 0.00 0.00 37.60 4.02
3633 3894 2.093783 CGCGAGAACTTATGGGTTTCAC 59.906 50.000 0.00 0.00 0.00 3.18
3634 3895 2.028839 TCGCGAGAACTTATGGGTTTCA 60.029 45.455 3.71 0.00 37.03 2.69
3635 3896 2.347755 GTCGCGAGAACTTATGGGTTTC 59.652 50.000 10.24 0.00 45.01 2.78
3636 3897 2.344025 GTCGCGAGAACTTATGGGTTT 58.656 47.619 10.24 0.00 45.01 3.27
3637 3898 1.405121 GGTCGCGAGAACTTATGGGTT 60.405 52.381 10.24 0.00 46.67 4.11
3638 3899 0.175073 GGTCGCGAGAACTTATGGGT 59.825 55.000 10.24 0.00 46.67 4.51
3639 3900 2.973420 GGTCGCGAGAACTTATGGG 58.027 57.895 10.24 0.00 46.67 4.00
3647 3908 0.389817 CCATGAGTTGGTCGCGAGAA 60.390 55.000 10.24 1.94 45.01 2.87
3648 3909 1.215382 CCATGAGTTGGTCGCGAGA 59.785 57.895 10.24 0.00 40.99 4.04
3649 3910 3.786101 CCATGAGTTGGTCGCGAG 58.214 61.111 10.24 0.00 40.99 5.03
3657 3918 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
3659 3920 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
3660 3921 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
3661 3922 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
3662 3923 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
3663 3924 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
3664 3925 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
3665 3926 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
3666 3927 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
3669 3930 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
3671 3932 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
3672 3933 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
3673 3934 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
3675 3936 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
3676 3937 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
3677 3938 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
3679 3940 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
3680 3941 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
3681 3942 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
3682 3943 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
3683 3944 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
3684 3945 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
3685 3946 3.570212 AGGGGTGCGTGGAAGCTT 61.570 61.111 0.00 0.00 38.13 3.74
3686 3947 4.335647 CAGGGGTGCGTGGAAGCT 62.336 66.667 0.00 0.00 38.13 3.74
3687 3948 4.643387 ACAGGGGTGCGTGGAAGC 62.643 66.667 0.00 0.00 37.71 3.86
3688 3949 2.358737 GACAGGGGTGCGTGGAAG 60.359 66.667 0.00 0.00 0.00 3.46
3689 3950 3.948719 GGACAGGGGTGCGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
3691 3952 2.593468 CTATGGACAGGGGTGCGTGG 62.593 65.000 0.00 0.00 38.35 4.94
3692 3953 1.153369 CTATGGACAGGGGTGCGTG 60.153 63.158 0.00 0.00 38.35 5.34
3694 3955 1.399744 TAGCTATGGACAGGGGTGCG 61.400 60.000 0.00 0.00 38.35 5.34
3696 3957 1.794714 ACTAGCTATGGACAGGGGTG 58.205 55.000 0.00 0.00 0.00 4.61
3698 3959 2.683768 AGAACTAGCTATGGACAGGGG 58.316 52.381 0.00 0.00 0.00 4.79
3699 3960 4.446371 CAAAGAACTAGCTATGGACAGGG 58.554 47.826 0.00 0.00 0.00 4.45
3701 3962 4.872691 CACCAAAGAACTAGCTATGGACAG 59.127 45.833 14.35 0.00 0.00 3.51
3702 3963 4.530553 TCACCAAAGAACTAGCTATGGACA 59.469 41.667 14.35 0.00 0.00 4.02
3704 3965 5.957771 ATCACCAAAGAACTAGCTATGGA 57.042 39.130 14.35 0.00 0.00 3.41
3706 3967 6.926272 GGAGTATCACCAAAGAACTAGCTATG 59.074 42.308 0.00 0.00 36.25 2.23
3707 3968 6.611642 TGGAGTATCACCAAAGAACTAGCTAT 59.388 38.462 0.00 0.00 36.25 2.97
3708 3969 5.955959 TGGAGTATCACCAAAGAACTAGCTA 59.044 40.000 0.00 0.00 36.25 3.32
3709 3970 4.777896 TGGAGTATCACCAAAGAACTAGCT 59.222 41.667 0.00 0.00 36.25 3.32
3710 3971 5.086104 TGGAGTATCACCAAAGAACTAGC 57.914 43.478 0.00 0.00 36.25 3.42
3717 3978 9.647145 ACCTGAAGGATTGGAGTATCACCAAAG 62.647 44.444 2.62 0.00 43.17 2.77
3718 3979 7.950045 ACCTGAAGGATTGGAGTATCACCAAA 61.950 42.308 2.62 0.00 43.17 3.28
3719 3980 6.527086 ACCTGAAGGATTGGAGTATCACCAA 61.527 44.000 2.62 0.00 43.61 3.67
3720 3981 3.455910 CCTGAAGGATTGGAGTATCACCA 59.544 47.826 0.00 0.00 34.60 4.17
3721 3982 3.456277 ACCTGAAGGATTGGAGTATCACC 59.544 47.826 2.62 0.00 38.94 4.02
3722 3983 4.407296 AGACCTGAAGGATTGGAGTATCAC 59.593 45.833 2.62 0.00 38.94 3.06
3724 3985 4.898861 AGAGACCTGAAGGATTGGAGTATC 59.101 45.833 2.62 0.00 38.94 2.24
3726 3987 4.017037 AGAGAGACCTGAAGGATTGGAGTA 60.017 45.833 2.62 0.00 38.94 2.59
3727 3988 3.103742 GAGAGACCTGAAGGATTGGAGT 58.896 50.000 2.62 0.00 38.94 3.85
3728 3989 3.373830 AGAGAGACCTGAAGGATTGGAG 58.626 50.000 2.62 0.00 38.94 3.86
3730 3991 5.423886 GTTAAGAGAGACCTGAAGGATTGG 58.576 45.833 2.62 0.00 38.94 3.16
3731 3992 5.105752 CGTTAAGAGAGACCTGAAGGATTG 58.894 45.833 2.62 0.00 38.94 2.67
3734 3995 3.090037 CCGTTAAGAGAGACCTGAAGGA 58.910 50.000 2.62 0.00 38.94 3.36
3735 3996 3.090037 TCCGTTAAGAGAGACCTGAAGG 58.910 50.000 0.00 0.00 42.17 3.46
3738 3999 3.345414 GAGTCCGTTAAGAGAGACCTGA 58.655 50.000 0.00 0.00 0.00 3.86
3739 4000 2.424246 GGAGTCCGTTAAGAGAGACCTG 59.576 54.545 0.00 0.00 0.00 4.00
3740 4001 2.309458 AGGAGTCCGTTAAGAGAGACCT 59.691 50.000 2.76 0.00 0.00 3.85
3744 4005 2.025898 GGGAGGAGTCCGTTAAGAGAG 58.974 57.143 2.76 0.00 45.05 3.20
3745 4006 1.356738 TGGGAGGAGTCCGTTAAGAGA 59.643 52.381 2.76 0.00 45.05 3.10
3746 4007 1.848652 TGGGAGGAGTCCGTTAAGAG 58.151 55.000 2.76 0.00 45.05 2.85
3747 4008 2.108168 CATGGGAGGAGTCCGTTAAGA 58.892 52.381 2.76 0.00 45.05 2.10
3748 4009 1.831736 ACATGGGAGGAGTCCGTTAAG 59.168 52.381 2.76 0.00 45.05 1.85
3749 4010 1.829222 GACATGGGAGGAGTCCGTTAA 59.171 52.381 2.76 0.00 45.05 2.01
3750 4011 1.272816 TGACATGGGAGGAGTCCGTTA 60.273 52.381 2.76 0.00 45.05 3.18
3751 4012 0.544357 TGACATGGGAGGAGTCCGTT 60.544 55.000 2.76 0.00 45.05 4.44
3752 4013 0.544357 TTGACATGGGAGGAGTCCGT 60.544 55.000 2.76 0.00 45.05 4.69
3753 4014 0.613260 TTTGACATGGGAGGAGTCCG 59.387 55.000 2.76 0.00 45.05 4.79
3754 4015 3.282885 GAATTTGACATGGGAGGAGTCC 58.717 50.000 0.00 0.00 43.05 3.85
3755 4016 2.939103 CGAATTTGACATGGGAGGAGTC 59.061 50.000 0.00 0.00 0.00 3.36
3756 4017 2.356125 CCGAATTTGACATGGGAGGAGT 60.356 50.000 0.00 0.00 0.00 3.85
3757 4018 2.292267 CCGAATTTGACATGGGAGGAG 58.708 52.381 0.00 0.00 0.00 3.69
3760 4021 2.991250 AGACCGAATTTGACATGGGAG 58.009 47.619 0.00 0.00 0.00 4.30
3762 4023 2.943033 GGTAGACCGAATTTGACATGGG 59.057 50.000 0.00 0.00 0.00 4.00
3763 4024 2.943033 GGGTAGACCGAATTTGACATGG 59.057 50.000 0.00 0.00 36.71 3.66
3764 4025 3.623060 CAGGGTAGACCGAATTTGACATG 59.377 47.826 0.00 0.00 46.96 3.21
3765 4026 3.517901 TCAGGGTAGACCGAATTTGACAT 59.482 43.478 0.00 0.00 46.96 3.06
3766 4027 2.901192 TCAGGGTAGACCGAATTTGACA 59.099 45.455 0.00 0.00 46.96 3.58
3767 4028 3.259902 GTCAGGGTAGACCGAATTTGAC 58.740 50.000 0.00 0.00 46.96 3.18
3768 4029 3.604875 GTCAGGGTAGACCGAATTTGA 57.395 47.619 0.00 0.00 46.96 2.69
3777 4038 2.756207 GTCAAGAGAGGTCAGGGTAGAC 59.244 54.545 0.00 0.00 37.80 2.59
3779 4040 2.808919 TGTCAAGAGAGGTCAGGGTAG 58.191 52.381 0.00 0.00 0.00 3.18
3780 4041 2.992847 TGTCAAGAGAGGTCAGGGTA 57.007 50.000 0.00 0.00 0.00 3.69
3781 4042 2.334006 ATGTCAAGAGAGGTCAGGGT 57.666 50.000 0.00 0.00 0.00 4.34
3782 4043 2.836981 AGAATGTCAAGAGAGGTCAGGG 59.163 50.000 0.00 0.00 0.00 4.45
3783 4044 3.118811 GGAGAATGTCAAGAGAGGTCAGG 60.119 52.174 0.00 0.00 0.00 3.86
3784 4045 3.428725 CGGAGAATGTCAAGAGAGGTCAG 60.429 52.174 0.00 0.00 0.00 3.51
3785 4046 2.493675 CGGAGAATGTCAAGAGAGGTCA 59.506 50.000 0.00 0.00 0.00 4.02
3786 4047 2.737039 GCGGAGAATGTCAAGAGAGGTC 60.737 54.545 0.00 0.00 0.00 3.85
3787 4048 1.205893 GCGGAGAATGTCAAGAGAGGT 59.794 52.381 0.00 0.00 0.00 3.85
3790 4051 1.402852 CGTGCGGAGAATGTCAAGAGA 60.403 52.381 0.00 0.00 0.00 3.10
3791 4052 0.994995 CGTGCGGAGAATGTCAAGAG 59.005 55.000 0.00 0.00 0.00 2.85
3793 4054 1.016130 AGCGTGCGGAGAATGTCAAG 61.016 55.000 0.00 0.00 0.00 3.02
3795 4056 0.602638 AAAGCGTGCGGAGAATGTCA 60.603 50.000 0.00 0.00 0.00 3.58
3796 4057 1.324736 CTAAAGCGTGCGGAGAATGTC 59.675 52.381 0.00 0.00 0.00 3.06
3797 4058 1.359848 CTAAAGCGTGCGGAGAATGT 58.640 50.000 0.00 0.00 0.00 2.71
3798 4059 0.026803 GCTAAAGCGTGCGGAGAATG 59.973 55.000 0.00 0.00 0.00 2.67
3799 4060 1.090052 GGCTAAAGCGTGCGGAGAAT 61.090 55.000 0.00 0.00 43.26 2.40
3802 4063 3.554692 CGGCTAAAGCGTGCGGAG 61.555 66.667 0.00 0.00 43.26 4.63
3803 4064 4.367023 ACGGCTAAAGCGTGCGGA 62.367 61.111 0.00 0.00 43.26 5.54
3805 4066 3.849953 GGACGGCTAAAGCGTGCG 61.850 66.667 0.00 1.74 43.26 5.34
3816 4077 3.264897 CAGTGCATAGCGGACGGC 61.265 66.667 0.00 0.00 41.69 5.68
3817 4078 2.586079 CCAGTGCATAGCGGACGG 60.586 66.667 0.00 0.00 41.69 4.79
3818 4079 1.589993 CTCCAGTGCATAGCGGACG 60.590 63.158 0.00 0.00 41.69 4.79
3821 4082 1.153289 AAGCTCCAGTGCATAGCGG 60.153 57.895 0.00 0.00 41.19 5.52
3822 4083 0.179089 AGAAGCTCCAGTGCATAGCG 60.179 55.000 0.00 0.00 41.19 4.26
3823 4084 1.297664 CAGAAGCTCCAGTGCATAGC 58.702 55.000 0.00 0.00 36.48 2.97
3824 4085 1.483827 TCCAGAAGCTCCAGTGCATAG 59.516 52.381 0.00 0.00 34.99 2.23
3825 4086 1.483827 CTCCAGAAGCTCCAGTGCATA 59.516 52.381 0.00 0.00 34.99 3.14
3826 4087 0.252479 CTCCAGAAGCTCCAGTGCAT 59.748 55.000 0.00 0.00 34.99 3.96
3827 4088 1.675801 CTCCAGAAGCTCCAGTGCA 59.324 57.895 0.00 0.00 34.99 4.57
3828 4089 1.078567 CCTCCAGAAGCTCCAGTGC 60.079 63.158 0.00 0.00 0.00 4.40
3829 4090 1.078567 GCCTCCAGAAGCTCCAGTG 60.079 63.158 0.00 0.00 0.00 3.66
3831 4092 1.994507 AGGCCTCCAGAAGCTCCAG 60.995 63.158 0.00 0.00 0.00 3.86
3833 4094 2.297129 ACAGGCCTCCAGAAGCTCC 61.297 63.158 0.00 0.00 0.00 4.70
3834 4095 1.078567 CACAGGCCTCCAGAAGCTC 60.079 63.158 0.00 0.00 0.00 4.09
3836 4097 2.749441 GCACAGGCCTCCAGAAGC 60.749 66.667 0.00 0.00 0.00 3.86
3837 4098 1.376942 CAGCACAGGCCTCCAGAAG 60.377 63.158 0.00 0.00 42.56 2.85
3840 4101 0.543277 TATTCAGCACAGGCCTCCAG 59.457 55.000 0.00 0.00 42.56 3.86
3842 4103 1.602311 CATATTCAGCACAGGCCTCC 58.398 55.000 0.00 0.00 42.56 4.30
3843 4104 0.950116 GCATATTCAGCACAGGCCTC 59.050 55.000 0.00 0.00 42.56 4.70
3844 4105 0.466922 GGCATATTCAGCACAGGCCT 60.467 55.000 0.00 0.00 42.56 5.19
3845 4106 1.458639 GGGCATATTCAGCACAGGCC 61.459 60.000 0.00 0.00 42.56 5.19
3846 4107 0.752743 TGGGCATATTCAGCACAGGC 60.753 55.000 0.00 0.00 41.18 4.85
3847 4108 3.500331 TGGGCATATTCAGCACAGG 57.500 52.632 0.00 0.00 41.18 4.00
3849 4110 1.824230 GGTTTGGGCATATTCAGCACA 59.176 47.619 0.00 0.00 45.03 4.57
3850 4111 1.824230 TGGTTTGGGCATATTCAGCAC 59.176 47.619 0.00 0.00 35.50 4.40
3851 4112 2.228545 TGGTTTGGGCATATTCAGCA 57.771 45.000 0.00 0.00 0.00 4.41
3852 4113 2.961062 AGATGGTTTGGGCATATTCAGC 59.039 45.455 0.00 0.00 0.00 4.26
3853 4114 4.209538 TGAGATGGTTTGGGCATATTCAG 58.790 43.478 0.00 0.00 0.00 3.02
3855 4116 4.276926 GTCTGAGATGGTTTGGGCATATTC 59.723 45.833 0.00 0.00 0.00 1.75
3857 4118 3.745480 CGTCTGAGATGGTTTGGGCATAT 60.745 47.826 0.00 0.00 0.00 1.78
3858 4119 2.419990 CGTCTGAGATGGTTTGGGCATA 60.420 50.000 0.00 0.00 0.00 3.14
3860 4121 0.321564 CGTCTGAGATGGTTTGGGCA 60.322 55.000 0.00 0.00 0.00 5.36
3861 4122 0.036388 TCGTCTGAGATGGTTTGGGC 60.036 55.000 1.24 0.00 0.00 5.36
3862 4123 2.283298 CATCGTCTGAGATGGTTTGGG 58.717 52.381 1.24 0.00 43.07 4.12
3863 4124 3.125829 CAACATCGTCTGAGATGGTTTGG 59.874 47.826 16.20 0.00 45.46 3.28
3864 4125 3.125829 CCAACATCGTCTGAGATGGTTTG 59.874 47.826 16.20 12.97 45.46 2.93
3865 4126 3.007940 TCCAACATCGTCTGAGATGGTTT 59.992 43.478 16.20 0.00 45.46 3.27
3866 4127 2.567169 TCCAACATCGTCTGAGATGGTT 59.433 45.455 16.20 0.00 45.46 3.67
3870 4131 3.854666 CTTGTCCAACATCGTCTGAGAT 58.145 45.455 0.00 0.00 0.00 2.75
3872 4133 1.728971 GCTTGTCCAACATCGTCTGAG 59.271 52.381 0.00 0.00 0.00 3.35
3873 4134 1.344438 AGCTTGTCCAACATCGTCTGA 59.656 47.619 0.00 0.00 0.00 3.27
3874 4135 1.800805 AGCTTGTCCAACATCGTCTG 58.199 50.000 0.00 0.00 0.00 3.51
3875 4136 2.037772 AGAAGCTTGTCCAACATCGTCT 59.962 45.455 2.10 0.00 0.00 4.18
3876 4137 2.413453 GAGAAGCTTGTCCAACATCGTC 59.587 50.000 12.50 0.00 0.00 4.20
3878 4139 2.693069 AGAGAAGCTTGTCCAACATCG 58.307 47.619 19.26 0.00 0.00 3.84
3879 4140 4.067896 TGAAGAGAAGCTTGTCCAACATC 58.932 43.478 19.26 10.83 36.83 3.06
3880 4141 4.090761 TGAAGAGAAGCTTGTCCAACAT 57.909 40.909 19.26 0.00 36.83 2.71
3882 4143 5.106515 GGTATTGAAGAGAAGCTTGTCCAAC 60.107 44.000 19.26 11.55 36.83 3.77
3883 4144 5.003804 GGTATTGAAGAGAAGCTTGTCCAA 58.996 41.667 19.26 16.61 36.83 3.53
3884 4145 4.565652 GGGTATTGAAGAGAAGCTTGTCCA 60.566 45.833 19.26 8.99 36.83 4.02
3885 4146 3.942115 GGGTATTGAAGAGAAGCTTGTCC 59.058 47.826 19.26 6.46 36.83 4.02
3886 4147 4.837972 AGGGTATTGAAGAGAAGCTTGTC 58.162 43.478 15.54 15.54 36.83 3.18
3887 4148 4.917906 AGGGTATTGAAGAGAAGCTTGT 57.082 40.909 2.10 0.00 36.83 3.16
3888 4149 9.566432 AATATAAGGGTATTGAAGAGAAGCTTG 57.434 33.333 2.10 0.00 36.83 4.01
3899 4160 7.385752 CGCCGTAAAGAAATATAAGGGTATTGA 59.614 37.037 0.00 0.00 0.00 2.57
3900 4161 7.360607 CCGCCGTAAAGAAATATAAGGGTATTG 60.361 40.741 0.00 0.00 0.00 1.90
3901 4162 6.652062 CCGCCGTAAAGAAATATAAGGGTATT 59.348 38.462 0.00 0.00 0.00 1.89
3902 4163 6.168389 CCGCCGTAAAGAAATATAAGGGTAT 58.832 40.000 0.00 0.00 0.00 2.73
3903 4164 5.511202 CCCGCCGTAAAGAAATATAAGGGTA 60.511 44.000 0.00 0.00 0.00 3.69
3989 4512 6.270231 ACATTCCCTAAGAACTGACTGTTACT 59.730 38.462 0.00 0.00 39.30 2.24
3990 4513 6.465084 ACATTCCCTAAGAACTGACTGTTAC 58.535 40.000 0.00 0.00 39.30 2.50
3991 4514 6.681729 ACATTCCCTAAGAACTGACTGTTA 57.318 37.500 0.00 0.00 39.30 2.41
3992 4515 5.568620 ACATTCCCTAAGAACTGACTGTT 57.431 39.130 0.00 0.00 42.38 3.16
3994 4517 5.665459 CCTACATTCCCTAAGAACTGACTG 58.335 45.833 0.00 0.00 37.29 3.51
4086 4610 7.762610 ACCAACCTTTTAACTATACTTTCCCT 58.237 34.615 0.00 0.00 0.00 4.20
4167 4691 7.309438 CCTTCATATTCCGATGTCTGATACTCA 60.309 40.741 0.00 0.00 0.00 3.41
4175 4699 5.598830 ACAGTACCTTCATATTCCGATGTCT 59.401 40.000 0.00 0.00 0.00 3.41
4179 4703 5.362717 TGACACAGTACCTTCATATTCCGAT 59.637 40.000 0.00 0.00 0.00 4.18
4200 4724 6.456501 AGTAAAACAGTGTGTCTAGGATGAC 58.543 40.000 0.00 0.00 37.47 3.06
4281 4807 8.109634 AGAATGGATCAAACAGTAACATAACCT 58.890 33.333 0.00 0.00 0.00 3.50
4408 4934 7.321984 GCCAGTTTTGTCAAAGTATACGTTAAC 59.678 37.037 3.64 0.89 0.00 2.01
4451 4977 6.785488 TCATATGCGACATTCTTTACATCC 57.215 37.500 0.00 0.00 0.00 3.51
4588 5114 6.113411 AGTCCCCTTAATAATCACAAGTTCG 58.887 40.000 0.00 0.00 0.00 3.95
4662 5188 7.173218 ACATTGATCACGGCTTGTTATTATAGG 59.827 37.037 0.00 0.00 0.00 2.57
4811 5337 5.248640 CCAGAACCTTGACAAGATACATGT 58.751 41.667 16.99 2.69 0.00 3.21
4899 5425 3.055167 TCACCTGGATCCAACAGTACATG 60.055 47.826 17.00 5.53 34.16 3.21
4904 5430 0.326264 GCTCACCTGGATCCAACAGT 59.674 55.000 17.00 10.76 34.16 3.55
5009 5535 6.619018 GCAAGATACAACATCGTAAAAACGGA 60.619 38.462 0.00 0.00 0.00 4.69
5026 5553 6.908825 TCATTTTGTACAGGTTGCAAGATAC 58.091 36.000 0.00 0.88 0.00 2.24
5108 5635 6.461110 AGAGATGCATTTTGTTTCCTATGG 57.539 37.500 0.00 0.00 0.00 2.74
5279 5806 9.914131 CTTTTCTGATTCGGATGTATATAGACA 57.086 33.333 2.07 2.07 0.00 3.41
5329 5856 4.766891 ACAACAAAATGTACTCCCTCCATG 59.233 41.667 0.00 0.00 0.00 3.66
5396 5924 4.830046 GCCAAGTAGAGATAGGACATCTGA 59.170 45.833 0.00 0.00 0.00 3.27
5491 6026 7.521261 GCAAATAGCATCCCATACTTCTTTCTC 60.521 40.741 0.00 0.00 44.79 2.87
5636 6171 6.211785 GGAAGGAGTATATAAGGTTCTCCAGG 59.788 46.154 15.24 0.00 44.79 4.45
5643 6178 7.672122 AGAAACGGAAGGAGTATATAAGGTT 57.328 36.000 0.00 0.00 0.00 3.50
5656 6191 4.274950 TGCAGACTAAAAAGAAACGGAAGG 59.725 41.667 0.00 0.00 0.00 3.46
5657 6192 5.418310 TGCAGACTAAAAAGAAACGGAAG 57.582 39.130 0.00 0.00 0.00 3.46
5658 6193 7.681939 ATATGCAGACTAAAAAGAAACGGAA 57.318 32.000 0.00 0.00 0.00 4.30
5659 6194 8.780846 TTATATGCAGACTAAAAAGAAACGGA 57.219 30.769 0.00 0.00 0.00 4.69
5660 6195 8.122952 CCTTATATGCAGACTAAAAAGAAACGG 58.877 37.037 0.00 0.00 0.00 4.44
5661 6196 8.665685 ACCTTATATGCAGACTAAAAAGAAACG 58.334 33.333 0.00 0.00 0.00 3.60
5665 6200 8.956426 CCAAACCTTATATGCAGACTAAAAAGA 58.044 33.333 0.00 0.00 0.00 2.52
5666 6201 8.739972 ACCAAACCTTATATGCAGACTAAAAAG 58.260 33.333 0.00 0.00 0.00 2.27
5667 6202 8.644374 ACCAAACCTTATATGCAGACTAAAAA 57.356 30.769 0.00 0.00 0.00 1.94
5668 6203 7.885922 TGACCAAACCTTATATGCAGACTAAAA 59.114 33.333 0.00 0.00 0.00 1.52
5669 6204 7.398829 TGACCAAACCTTATATGCAGACTAAA 58.601 34.615 0.00 0.00 0.00 1.85
5670 6205 6.953101 TGACCAAACCTTATATGCAGACTAA 58.047 36.000 0.00 0.00 0.00 2.24
5671 6206 6.553953 TGACCAAACCTTATATGCAGACTA 57.446 37.500 0.00 0.00 0.00 2.59
5672 6207 5.435686 TGACCAAACCTTATATGCAGACT 57.564 39.130 0.00 0.00 0.00 3.24
5673 6208 6.151144 ACTTTGACCAAACCTTATATGCAGAC 59.849 38.462 0.00 0.00 0.00 3.51
5674 6209 6.245408 ACTTTGACCAAACCTTATATGCAGA 58.755 36.000 0.00 0.00 0.00 4.26
5675 6210 6.150976 TGACTTTGACCAAACCTTATATGCAG 59.849 38.462 0.00 0.00 0.00 4.41
5676 6211 6.007076 TGACTTTGACCAAACCTTATATGCA 58.993 36.000 0.00 0.00 0.00 3.96
5677 6212 6.509418 TGACTTTGACCAAACCTTATATGC 57.491 37.500 0.00 0.00 0.00 3.14
5678 6213 8.742554 GTTTGACTTTGACCAAACCTTATATG 57.257 34.615 0.00 0.00 43.62 1.78
5680 6215 8.973182 AAAGTTTGACTTTGACCAAACCTTATA 58.027 29.630 12.56 0.00 45.83 0.98
5681 6216 7.847096 AAAGTTTGACTTTGACCAAACCTTAT 58.153 30.769 12.56 0.00 45.83 1.73
5682 6217 7.234661 AAAGTTTGACTTTGACCAAACCTTA 57.765 32.000 12.56 0.00 45.83 2.69
5683 6218 6.109156 AAAGTTTGACTTTGACCAAACCTT 57.891 33.333 12.56 5.50 45.83 3.50
5684 6219 5.738619 AAAGTTTGACTTTGACCAAACCT 57.261 34.783 12.56 0.03 45.83 3.50
5829 6364 9.508642 AAAGTTTGACCAATTTTGTAGGAAAAA 57.491 25.926 0.00 0.00 33.76 1.94
5831 6366 9.589111 GTAAAGTTTGACCAATTTTGTAGGAAA 57.411 29.630 0.00 0.00 0.00 3.13
5832 6367 8.750298 TGTAAAGTTTGACCAATTTTGTAGGAA 58.250 29.630 0.00 0.00 0.00 3.36
5833 6368 8.294954 TGTAAAGTTTGACCAATTTTGTAGGA 57.705 30.769 0.00 0.00 0.00 2.94
5834 6369 8.934507 TTGTAAAGTTTGACCAATTTTGTAGG 57.065 30.769 0.00 0.00 0.00 3.18
5836 6371 9.930693 ACTTTGTAAAGTTTGACCAATTTTGTA 57.069 25.926 4.25 0.00 46.52 2.41
5837 6372 8.840833 ACTTTGTAAAGTTTGACCAATTTTGT 57.159 26.923 4.25 0.00 46.52 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.