Multiple sequence alignment - TraesCS2D01G217200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G217200 chr2D 100.000 4069 0 0 1875 5943 180327705 180323637 0.000000e+00 7515.0
1 TraesCS2D01G217200 chr2D 100.000 1501 0 0 1 1501 180329579 180328079 0.000000e+00 2772.0
2 TraesCS2D01G217200 chr2D 73.960 745 168 22 2516 3247 180140085 180139354 1.630000e-70 278.0
3 TraesCS2D01G217200 chr2D 77.941 136 26 4 306 439 3039099 3039232 1.370000e-11 82.4
4 TraesCS2D01G217200 chr2D 80.583 103 18 2 306 407 73208721 73208822 1.780000e-10 78.7
5 TraesCS2D01G217200 chr2A 93.701 3286 173 11 2028 5290 194677268 194680542 0.000000e+00 4891.0
6 TraesCS2D01G217200 chr2A 92.955 1093 38 10 438 1496 194675971 194677058 0.000000e+00 1555.0
7 TraesCS2D01G217200 chr2A 86.997 646 69 9 5304 5943 194681324 194681960 0.000000e+00 713.0
8 TraesCS2D01G217200 chr2A 73.072 765 182 20 2493 3245 194473816 194473064 3.560000e-62 250.0
9 TraesCS2D01G217200 chr2A 85.938 64 9 0 662 725 730640716 730640779 1.070000e-07 69.4
10 TraesCS2D01G217200 chr2B 92.971 3329 194 12 2412 5710 236884050 236880732 0.000000e+00 4815.0
11 TraesCS2D01G217200 chr2B 93.710 1081 37 8 438 1496 236886021 236884950 0.000000e+00 1591.0
12 TraesCS2D01G217200 chr2B 90.055 543 46 7 1875 2411 236884747 236884207 0.000000e+00 697.0
13 TraesCS2D01G217200 chr2B 88.382 241 23 3 5708 5943 236872169 236871929 9.750000e-73 285.0
14 TraesCS2D01G217200 chr4D 98.899 454 5 0 1875 2328 134566613 134567066 0.000000e+00 811.0
15 TraesCS2D01G217200 chr4D 93.939 297 16 2 9 303 405246667 405246963 1.170000e-121 448.0
16 TraesCS2D01G217200 chr4D 93.919 296 15 3 7 301 239175083 239174790 1.520000e-120 444.0
17 TraesCS2D01G217200 chr3D 94.576 295 15 1 9 302 18681983 18682277 7.020000e-124 455.0
18 TraesCS2D01G217200 chr3D 94.257 296 16 1 9 303 556876140 556876435 9.080000e-123 451.0
19 TraesCS2D01G217200 chr1D 94.040 302 15 3 9 307 268074912 268075213 7.020000e-124 455.0
20 TraesCS2D01G217200 chr6D 94.020 301 12 3 9 303 139173439 139173739 9.080000e-123 451.0
21 TraesCS2D01G217200 chr5D 93.667 300 12 3 9 301 511653868 511653569 5.470000e-120 442.0
22 TraesCS2D01G217200 chr5D 93.289 298 14 3 11 302 2365293 2365590 9.150000e-118 435.0
23 TraesCS2D01G217200 chr7D 93.377 302 13 3 9 303 580736854 580737155 1.970000e-119 440.0
24 TraesCS2D01G217200 chr7D 86.713 143 18 1 301 443 592682490 592682349 2.220000e-34 158.0
25 TraesCS2D01G217200 chr7D 85.156 128 17 2 320 447 209623710 209623585 4.830000e-26 130.0
26 TraesCS2D01G217200 chr7D 88.750 80 9 0 303 382 635404166 635404245 1.360000e-16 99.0
27 TraesCS2D01G217200 chr5B 88.235 136 16 0 306 441 469977189 469977054 4.770000e-36 163.0
28 TraesCS2D01G217200 chr1A 77.692 130 26 3 315 443 138230128 138230255 6.390000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G217200 chr2D 180323637 180329579 5942 True 5143.500000 7515 100.000000 1 5943 2 chr2D.!!$R2 5942
1 TraesCS2D01G217200 chr2D 180139354 180140085 731 True 278.000000 278 73.960000 2516 3247 1 chr2D.!!$R1 731
2 TraesCS2D01G217200 chr2A 194675971 194681960 5989 False 2386.333333 4891 91.217667 438 5943 3 chr2A.!!$F2 5505
3 TraesCS2D01G217200 chr2A 194473064 194473816 752 True 250.000000 250 73.072000 2493 3245 1 chr2A.!!$R1 752
4 TraesCS2D01G217200 chr2B 236880732 236886021 5289 True 2367.666667 4815 92.245333 438 5710 3 chr2B.!!$R2 5272

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.033504 CATGTCCCCGCGCTACTAAT 59.966 55.0 5.56 0.0 0.00 1.73 F
294 295 0.034670 CTGCTGCTAGGCTTTTCCCT 60.035 55.0 0.00 0.0 39.05 4.20 F
353 354 0.041312 CCGTTTGAGGCGTTTGTCTG 60.041 55.0 0.00 0.0 0.00 3.51 F
356 357 0.106918 TTTGAGGCGTTTGTCTGGGT 60.107 50.0 0.00 0.0 0.00 4.51 F
423 424 0.108567 GAGGCGACTTTGAGAGGTCC 60.109 60.0 0.00 0.0 44.43 4.46 F
435 436 0.251430 AGAGGTCCGGCTATAGAGGC 60.251 60.0 3.21 0.0 44.80 4.70 F
436 437 0.251430 GAGGTCCGGCTATAGAGGCT 60.251 60.0 9.43 0.0 46.06 4.58 F
1343 1377 1.256812 GCCCAGCTTGGTGTATGTTT 58.743 50.0 5.61 0.0 35.17 2.83 F
2597 2793 0.037697 TTTGGGTGATCTCGGTCGTG 60.038 55.0 0.00 0.0 0.00 4.35 F
2957 3153 0.036010 AGATTGACCCAAGAGCACCG 60.036 55.0 0.00 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2155 2192 0.178068 ACCCATAGTAGCAAGTGCCG 59.822 55.000 0.0 0.0 43.38 5.69 R
2158 2195 3.068165 TGATCGACCCATAGTAGCAAGTG 59.932 47.826 0.0 0.0 0.00 3.16 R
2162 2199 4.955811 AATTGATCGACCCATAGTAGCA 57.044 40.909 0.0 0.0 0.00 3.49 R
2332 2373 6.796426 TCGATCTATCTCAAACGAGAATGTT 58.204 36.000 0.0 0.0 42.72 2.71 R
2410 2451 3.034635 AGCTATGCAAGTGCCTACTACT 58.965 45.455 0.0 0.0 41.18 2.57 R
2459 2655 4.396166 AGCGGAGAAAAATGTAATCAGTGG 59.604 41.667 0.0 0.0 0.00 4.00 R
2588 2784 1.807165 CACATCTGCCACGACCGAG 60.807 63.158 0.0 0.0 0.00 4.63 R
2855 3051 0.617413 AGAGGACCAATGAGCCACTG 59.383 55.000 0.0 0.0 0.00 3.66 R
4643 4858 0.542805 AATACCACAACCGCCGGTAT 59.457 50.000 10.3 0.0 45.79 2.73 R
5052 5267 1.423584 TCTGCCACTCAAGAGTCCAA 58.576 50.000 0.0 0.0 40.20 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 3.814577 GCAGTAGCGAGTGGAGAAA 57.185 52.632 3.71 0.00 0.00 2.52
73 74 1.634702 GCAGTAGCGAGTGGAGAAAG 58.365 55.000 3.71 0.00 0.00 2.62
74 75 1.067495 GCAGTAGCGAGTGGAGAAAGT 60.067 52.381 3.71 0.00 0.00 2.66
75 76 2.610727 GCAGTAGCGAGTGGAGAAAGTT 60.611 50.000 3.71 0.00 0.00 2.66
76 77 3.367087 GCAGTAGCGAGTGGAGAAAGTTA 60.367 47.826 3.71 0.00 0.00 2.24
77 78 4.416620 CAGTAGCGAGTGGAGAAAGTTAG 58.583 47.826 0.00 0.00 0.00 2.34
78 79 2.371910 AGCGAGTGGAGAAAGTTAGC 57.628 50.000 0.00 0.00 0.00 3.09
79 80 1.618837 AGCGAGTGGAGAAAGTTAGCA 59.381 47.619 0.00 0.00 0.00 3.49
80 81 1.996191 GCGAGTGGAGAAAGTTAGCAG 59.004 52.381 0.00 0.00 0.00 4.24
81 82 1.996191 CGAGTGGAGAAAGTTAGCAGC 59.004 52.381 0.00 0.00 0.00 5.25
82 83 2.610479 CGAGTGGAGAAAGTTAGCAGCA 60.610 50.000 0.00 0.00 0.00 4.41
83 84 2.999355 GAGTGGAGAAAGTTAGCAGCAG 59.001 50.000 0.00 0.00 0.00 4.24
84 85 1.466558 GTGGAGAAAGTTAGCAGCAGC 59.533 52.381 0.00 0.00 42.56 5.25
94 95 3.468007 GCAGCAGCGTCACAGTAG 58.532 61.111 0.00 0.00 0.00 2.57
95 96 2.734673 GCAGCAGCGTCACAGTAGC 61.735 63.158 0.00 0.00 0.00 3.58
96 97 1.373371 CAGCAGCGTCACAGTAGCA 60.373 57.895 0.00 0.00 0.00 3.49
97 98 1.080230 AGCAGCGTCACAGTAGCAG 60.080 57.895 0.00 0.00 0.00 4.24
98 99 1.373497 GCAGCGTCACAGTAGCAGT 60.373 57.895 0.00 0.00 0.00 4.40
99 100 0.109272 GCAGCGTCACAGTAGCAGTA 60.109 55.000 0.00 0.00 0.00 2.74
100 101 1.901538 CAGCGTCACAGTAGCAGTAG 58.098 55.000 0.00 0.00 0.00 2.57
101 102 0.171455 AGCGTCACAGTAGCAGTAGC 59.829 55.000 0.00 0.00 42.56 3.58
112 113 4.435436 CAGTAGCGCGTCCAGGCA 62.435 66.667 8.43 0.00 0.00 4.75
113 114 3.691342 AGTAGCGCGTCCAGGCAA 61.691 61.111 8.43 0.00 0.00 4.52
114 115 2.511600 GTAGCGCGTCCAGGCAAT 60.512 61.111 8.43 0.00 0.00 3.56
115 116 2.511373 TAGCGCGTCCAGGCAATG 60.511 61.111 8.43 0.00 0.00 2.82
124 125 4.105733 CAGGCAATGCGCGCAAGA 62.106 61.111 39.68 16.36 43.84 3.02
125 126 3.807538 AGGCAATGCGCGCAAGAG 61.808 61.111 39.68 29.07 43.84 2.85
134 135 2.593376 CGCGCAAGAGCTATTAGCA 58.407 52.632 17.59 0.00 40.63 3.49
135 136 0.506080 CGCGCAAGAGCTATTAGCAG 59.494 55.000 17.59 5.90 40.63 4.24
136 137 1.576356 GCGCAAGAGCTATTAGCAGT 58.424 50.000 17.59 1.44 40.63 4.40
137 138 2.743938 GCGCAAGAGCTATTAGCAGTA 58.256 47.619 17.59 0.00 40.63 2.74
138 139 2.728839 GCGCAAGAGCTATTAGCAGTAG 59.271 50.000 17.59 6.22 40.63 2.57
139 140 2.728839 CGCAAGAGCTATTAGCAGTAGC 59.271 50.000 17.59 13.77 45.56 3.58
141 142 6.837591 CGCAAGAGCTATTAGCAGTAGCGA 62.838 50.000 26.65 0.00 46.49 4.93
149 150 4.844420 GCAGTAGCGAGCTTCCAT 57.156 55.556 1.86 0.00 0.00 3.41
150 151 2.305405 GCAGTAGCGAGCTTCCATG 58.695 57.895 1.86 0.00 0.00 3.66
151 152 0.179100 GCAGTAGCGAGCTTCCATGA 60.179 55.000 1.86 0.00 0.00 3.07
152 153 1.740380 GCAGTAGCGAGCTTCCATGAA 60.740 52.381 1.86 0.00 0.00 2.57
153 154 2.200067 CAGTAGCGAGCTTCCATGAAG 58.800 52.381 1.86 0.00 42.03 3.02
161 162 1.136147 CTTCCATGAAGCACGCTGC 59.864 57.895 0.00 0.00 45.46 5.25
170 171 2.740055 GCACGCTGCTGCTACACT 60.740 61.111 14.03 0.00 40.96 3.55
171 172 2.320587 GCACGCTGCTGCTACACTT 61.321 57.895 14.03 0.00 40.96 3.16
172 173 1.494628 CACGCTGCTGCTACACTTG 59.505 57.895 14.03 0.00 36.97 3.16
173 174 1.069765 ACGCTGCTGCTACACTTGT 59.930 52.632 14.03 0.00 36.97 3.16
174 175 0.317160 ACGCTGCTGCTACACTTGTA 59.683 50.000 14.03 0.00 36.97 2.41
175 176 1.066858 ACGCTGCTGCTACACTTGTAT 60.067 47.619 14.03 0.00 36.97 2.29
176 177 2.165641 ACGCTGCTGCTACACTTGTATA 59.834 45.455 14.03 0.00 36.97 1.47
177 178 2.791560 CGCTGCTGCTACACTTGTATAG 59.208 50.000 14.03 0.00 36.97 1.31
178 179 2.541762 GCTGCTGCTACACTTGTATAGC 59.458 50.000 8.53 14.35 43.46 2.97
184 185 4.933330 TGCTACACTTGTATAGCAGTAGC 58.067 43.478 9.37 13.68 46.82 3.58
185 186 3.975670 GCTACACTTGTATAGCAGTAGCG 59.024 47.826 6.22 0.00 44.59 4.26
186 187 5.599300 GCTACACTTGTATAGCAGTAGCGC 61.599 50.000 0.00 0.00 44.59 5.92
210 211 4.139420 GCACGTGCTGCTGCTACG 62.139 66.667 32.55 26.21 43.33 3.51
211 212 3.481903 CACGTGCTGCTGCTACGG 61.482 66.667 28.86 19.87 42.99 4.02
212 213 4.742201 ACGTGCTGCTGCTACGGG 62.742 66.667 28.86 14.06 42.99 5.28
213 214 4.742201 CGTGCTGCTGCTACGGGT 62.742 66.667 22.86 0.00 38.79 5.28
214 215 2.358737 GTGCTGCTGCTACGGGTT 60.359 61.111 17.00 0.00 40.48 4.11
215 216 1.079405 GTGCTGCTGCTACGGGTTA 60.079 57.895 17.00 0.00 40.48 2.85
216 217 1.084370 GTGCTGCTGCTACGGGTTAG 61.084 60.000 17.00 0.00 40.48 2.34
217 218 1.218316 GCTGCTGCTACGGGTTAGT 59.782 57.895 8.53 0.00 36.03 2.24
218 219 0.391263 GCTGCTGCTACGGGTTAGTT 60.391 55.000 8.53 0.00 36.03 2.24
219 220 1.359848 CTGCTGCTACGGGTTAGTTG 58.640 55.000 0.00 0.00 0.00 3.16
220 221 0.682852 TGCTGCTACGGGTTAGTTGT 59.317 50.000 0.00 0.00 0.00 3.32
221 222 1.894466 TGCTGCTACGGGTTAGTTGTA 59.106 47.619 0.00 0.00 0.00 2.41
222 223 2.094390 TGCTGCTACGGGTTAGTTGTAG 60.094 50.000 0.00 0.00 38.83 2.74
225 226 1.553308 CTACGGGTTAGTTGTAGCGC 58.447 55.000 0.00 0.00 30.29 5.92
226 227 0.173255 TACGGGTTAGTTGTAGCGCC 59.827 55.000 2.29 0.00 0.00 6.53
227 228 1.217244 CGGGTTAGTTGTAGCGCCT 59.783 57.895 2.29 0.00 0.00 5.52
228 229 0.390735 CGGGTTAGTTGTAGCGCCTT 60.391 55.000 2.29 0.00 0.00 4.35
229 230 1.135024 CGGGTTAGTTGTAGCGCCTTA 60.135 52.381 2.29 0.00 0.00 2.69
230 231 2.482490 CGGGTTAGTTGTAGCGCCTTAT 60.482 50.000 2.29 0.00 0.00 1.73
231 232 3.243501 CGGGTTAGTTGTAGCGCCTTATA 60.244 47.826 2.29 0.00 0.00 0.98
232 233 4.696455 GGGTTAGTTGTAGCGCCTTATAA 58.304 43.478 2.29 0.00 0.00 0.98
233 234 5.303165 GGGTTAGTTGTAGCGCCTTATAAT 58.697 41.667 2.29 0.00 0.00 1.28
234 235 5.761726 GGGTTAGTTGTAGCGCCTTATAATT 59.238 40.000 2.29 0.00 0.00 1.40
235 236 6.930722 GGGTTAGTTGTAGCGCCTTATAATTA 59.069 38.462 2.29 0.00 0.00 1.40
236 237 7.117379 GGGTTAGTTGTAGCGCCTTATAATTAG 59.883 40.741 2.29 0.00 0.00 1.73
237 238 7.359849 GGTTAGTTGTAGCGCCTTATAATTAGC 60.360 40.741 2.29 0.00 0.00 3.09
244 245 3.991069 CGCCTTATAATTAGCGCATGTC 58.009 45.455 11.47 0.00 42.31 3.06
245 246 3.181520 CGCCTTATAATTAGCGCATGTCC 60.182 47.826 11.47 0.00 42.31 4.02
246 247 3.127030 GCCTTATAATTAGCGCATGTCCC 59.873 47.826 11.47 0.00 0.00 4.46
247 248 3.689649 CCTTATAATTAGCGCATGTCCCC 59.310 47.826 11.47 0.00 0.00 4.81
248 249 1.808411 ATAATTAGCGCATGTCCCCG 58.192 50.000 11.47 0.00 0.00 5.73
255 256 4.530857 GCATGTCCCCGCGCTACT 62.531 66.667 5.56 0.00 0.00 2.57
256 257 3.125607 CATGTCCCCGCGCTACTA 58.874 61.111 5.56 0.00 0.00 1.82
257 258 1.440060 CATGTCCCCGCGCTACTAA 59.560 57.895 5.56 0.00 0.00 2.24
258 259 0.033504 CATGTCCCCGCGCTACTAAT 59.966 55.000 5.56 0.00 0.00 1.73
259 260 0.033504 ATGTCCCCGCGCTACTAATG 59.966 55.000 5.56 0.00 0.00 1.90
260 261 1.324740 TGTCCCCGCGCTACTAATGT 61.325 55.000 5.56 0.00 0.00 2.71
261 262 0.670162 GTCCCCGCGCTACTAATGTA 59.330 55.000 5.56 0.00 0.00 2.29
262 263 0.670162 TCCCCGCGCTACTAATGTAC 59.330 55.000 5.56 0.00 0.00 2.90
263 264 0.319297 CCCCGCGCTACTAATGTACC 60.319 60.000 5.56 0.00 0.00 3.34
264 265 0.672342 CCCGCGCTACTAATGTACCT 59.328 55.000 5.56 0.00 0.00 3.08
265 266 1.881973 CCCGCGCTACTAATGTACCTA 59.118 52.381 5.56 0.00 0.00 3.08
266 267 2.095364 CCCGCGCTACTAATGTACCTAG 60.095 54.545 5.56 0.00 0.00 3.02
267 268 2.810274 CCGCGCTACTAATGTACCTAGA 59.190 50.000 5.56 0.00 0.00 2.43
268 269 3.251729 CCGCGCTACTAATGTACCTAGAA 59.748 47.826 5.56 0.00 0.00 2.10
269 270 4.217497 CGCGCTACTAATGTACCTAGAAC 58.783 47.826 5.56 0.00 0.00 3.01
270 271 4.544651 GCGCTACTAATGTACCTAGAACC 58.455 47.826 0.00 0.00 0.00 3.62
271 272 4.558296 GCGCTACTAATGTACCTAGAACCC 60.558 50.000 0.00 0.00 0.00 4.11
272 273 4.581824 CGCTACTAATGTACCTAGAACCCA 59.418 45.833 6.19 0.00 0.00 4.51
273 274 5.506982 CGCTACTAATGTACCTAGAACCCAC 60.507 48.000 6.19 0.00 0.00 4.61
274 275 4.996788 ACTAATGTACCTAGAACCCACG 57.003 45.455 6.19 0.00 0.00 4.94
275 276 2.685850 AATGTACCTAGAACCCACGC 57.314 50.000 0.00 0.00 0.00 5.34
276 277 1.861982 ATGTACCTAGAACCCACGCT 58.138 50.000 0.00 0.00 0.00 5.07
277 278 0.892755 TGTACCTAGAACCCACGCTG 59.107 55.000 0.00 0.00 0.00 5.18
278 279 0.459759 GTACCTAGAACCCACGCTGC 60.460 60.000 0.00 0.00 0.00 5.25
279 280 0.613853 TACCTAGAACCCACGCTGCT 60.614 55.000 0.00 0.00 0.00 4.24
280 281 1.448540 CCTAGAACCCACGCTGCTG 60.449 63.158 0.00 0.00 0.00 4.41
281 282 2.047274 TAGAACCCACGCTGCTGC 60.047 61.111 5.34 5.34 0.00 5.25
282 283 2.513026 CTAGAACCCACGCTGCTGCT 62.513 60.000 14.03 0.00 36.97 4.24
283 284 1.254975 TAGAACCCACGCTGCTGCTA 61.255 55.000 14.03 0.00 36.97 3.49
284 285 2.046892 AACCCACGCTGCTGCTAG 60.047 61.111 14.03 5.66 36.97 3.42
285 286 3.612247 AACCCACGCTGCTGCTAGG 62.612 63.158 14.03 13.89 36.97 3.02
287 288 4.463879 CCACGCTGCTGCTAGGCT 62.464 66.667 14.03 0.00 36.97 4.58
288 289 2.435586 CACGCTGCTGCTAGGCTT 60.436 61.111 14.03 0.00 36.97 4.35
289 290 2.037136 CACGCTGCTGCTAGGCTTT 61.037 57.895 14.03 0.00 36.97 3.51
290 291 1.302832 ACGCTGCTGCTAGGCTTTT 60.303 52.632 14.03 0.00 36.97 2.27
291 292 1.301677 ACGCTGCTGCTAGGCTTTTC 61.302 55.000 14.03 0.00 36.97 2.29
292 293 1.805910 GCTGCTGCTAGGCTTTTCC 59.194 57.895 8.53 0.00 36.03 3.13
293 294 1.661498 GCTGCTGCTAGGCTTTTCCC 61.661 60.000 8.53 0.00 36.03 3.97
294 295 0.034670 CTGCTGCTAGGCTTTTCCCT 60.035 55.000 0.00 0.00 39.05 4.20
295 296 1.210478 CTGCTGCTAGGCTTTTCCCTA 59.790 52.381 0.00 0.00 36.41 3.53
302 303 4.674281 CTAGGCTTTTCCCTAGTAGTGG 57.326 50.000 0.00 0.00 46.16 4.00
303 304 2.197465 AGGCTTTTCCCTAGTAGTGGG 58.803 52.381 0.00 0.00 45.90 4.61
304 305 1.914108 GGCTTTTCCCTAGTAGTGGGT 59.086 52.381 0.00 0.00 44.84 4.51
305 306 2.355818 GGCTTTTCCCTAGTAGTGGGTG 60.356 54.545 0.00 0.00 44.84 4.61
306 307 2.355818 GCTTTTCCCTAGTAGTGGGTGG 60.356 54.545 0.00 0.00 44.84 4.61
307 308 1.961133 TTTCCCTAGTAGTGGGTGGG 58.039 55.000 0.00 0.00 44.84 4.61
308 309 0.794934 TTCCCTAGTAGTGGGTGGGT 59.205 55.000 0.00 0.00 44.84 4.51
309 310 0.042131 TCCCTAGTAGTGGGTGGGTG 59.958 60.000 0.00 0.00 44.84 4.61
310 311 1.623542 CCCTAGTAGTGGGTGGGTGC 61.624 65.000 0.00 0.00 39.82 5.01
311 312 1.623542 CCTAGTAGTGGGTGGGTGCC 61.624 65.000 0.00 0.00 0.00 5.01
312 313 1.956629 CTAGTAGTGGGTGGGTGCCG 61.957 65.000 0.00 0.00 0.00 5.69
320 321 4.008933 GTGGGTGCCGCTCAGTCT 62.009 66.667 0.00 0.00 0.00 3.24
321 322 4.007644 TGGGTGCCGCTCAGTCTG 62.008 66.667 0.00 0.00 0.00 3.51
322 323 4.767255 GGGTGCCGCTCAGTCTGG 62.767 72.222 0.00 0.00 0.00 3.86
323 324 4.767255 GGTGCCGCTCAGTCTGGG 62.767 72.222 0.00 0.00 0.00 4.45
329 330 3.257933 GCTCAGTCTGGGCGTTTG 58.742 61.111 9.43 0.00 32.27 2.93
330 331 1.301716 GCTCAGTCTGGGCGTTTGA 60.302 57.895 9.43 0.00 32.27 2.69
331 332 1.294659 GCTCAGTCTGGGCGTTTGAG 61.295 60.000 9.43 0.00 32.27 3.02
332 333 0.671781 CTCAGTCTGGGCGTTTGAGG 60.672 60.000 0.00 0.00 33.39 3.86
333 334 2.032681 AGTCTGGGCGTTTGAGGC 59.967 61.111 0.00 0.00 0.00 4.70
339 340 3.292159 GGCGTTTGAGGCCCGTTT 61.292 61.111 0.00 0.00 42.98 3.60
340 341 2.050442 GCGTTTGAGGCCCGTTTG 60.050 61.111 0.00 0.00 0.00 2.93
341 342 2.548295 GCGTTTGAGGCCCGTTTGA 61.548 57.895 0.00 0.00 0.00 2.69
342 343 1.574428 CGTTTGAGGCCCGTTTGAG 59.426 57.895 0.00 0.00 0.00 3.02
343 344 1.852067 CGTTTGAGGCCCGTTTGAGG 61.852 60.000 0.00 0.00 0.00 3.86
349 350 2.050442 GCCCGTTTGAGGCGTTTG 60.050 61.111 0.00 0.00 41.41 2.93
350 351 2.841160 GCCCGTTTGAGGCGTTTGT 61.841 57.895 0.00 0.00 41.41 2.83
351 352 1.281656 CCCGTTTGAGGCGTTTGTC 59.718 57.895 0.00 0.00 0.00 3.18
352 353 1.164041 CCCGTTTGAGGCGTTTGTCT 61.164 55.000 0.00 0.00 0.00 3.41
353 354 0.041312 CCGTTTGAGGCGTTTGTCTG 60.041 55.000 0.00 0.00 0.00 3.51
354 355 0.041312 CGTTTGAGGCGTTTGTCTGG 60.041 55.000 0.00 0.00 0.00 3.86
355 356 0.310854 GTTTGAGGCGTTTGTCTGGG 59.689 55.000 0.00 0.00 0.00 4.45
356 357 0.106918 TTTGAGGCGTTTGTCTGGGT 60.107 50.000 0.00 0.00 0.00 4.51
357 358 0.534203 TTGAGGCGTTTGTCTGGGTC 60.534 55.000 0.00 0.00 0.00 4.46
358 359 2.027625 GAGGCGTTTGTCTGGGTCG 61.028 63.158 0.00 0.00 0.00 4.79
359 360 2.029964 GGCGTTTGTCTGGGTCGA 59.970 61.111 0.00 0.00 0.00 4.20
360 361 1.595929 GGCGTTTGTCTGGGTCGAA 60.596 57.895 0.00 0.00 0.00 3.71
361 362 1.161563 GGCGTTTGTCTGGGTCGAAA 61.162 55.000 0.00 0.00 0.00 3.46
362 363 0.658897 GCGTTTGTCTGGGTCGAAAA 59.341 50.000 0.00 0.00 0.00 2.29
363 364 1.064357 GCGTTTGTCTGGGTCGAAAAA 59.936 47.619 0.00 0.00 0.00 1.94
380 381 2.799126 AAAATATGACCGGGCAGTGA 57.201 45.000 18.96 3.39 0.00 3.41
381 382 2.038387 AAATATGACCGGGCAGTGAC 57.962 50.000 18.96 0.00 0.00 3.67
382 383 0.180406 AATATGACCGGGCAGTGACC 59.820 55.000 18.96 4.30 0.00 4.02
383 384 0.980754 ATATGACCGGGCAGTGACCA 60.981 55.000 18.96 0.00 0.00 4.02
384 385 1.613317 TATGACCGGGCAGTGACCAG 61.613 60.000 18.96 6.17 0.00 4.00
392 393 3.957586 CAGTGACCAGGCAGCCCA 61.958 66.667 8.22 0.00 0.00 5.36
393 394 3.958860 AGTGACCAGGCAGCCCAC 61.959 66.667 8.22 9.23 0.00 4.61
407 408 4.235762 CCACCCGGGCGTATGAGG 62.236 72.222 24.08 7.47 0.00 3.86
408 409 4.910585 CACCCGGGCGTATGAGGC 62.911 72.222 24.08 0.00 0.00 4.70
411 412 4.944372 CCGGGCGTATGAGGCGAC 62.944 72.222 0.00 0.00 37.59 5.19
413 414 2.499685 GGGCGTATGAGGCGACTT 59.500 61.111 0.00 0.00 44.43 3.01
414 415 1.153429 GGGCGTATGAGGCGACTTT 60.153 57.895 0.00 0.00 44.43 2.66
415 416 1.429148 GGGCGTATGAGGCGACTTTG 61.429 60.000 0.00 0.00 44.43 2.77
416 417 0.459585 GGCGTATGAGGCGACTTTGA 60.460 55.000 0.00 0.00 44.43 2.69
417 418 0.924090 GCGTATGAGGCGACTTTGAG 59.076 55.000 0.00 0.00 44.43 3.02
418 419 1.469251 GCGTATGAGGCGACTTTGAGA 60.469 52.381 0.00 0.00 44.43 3.27
419 420 2.455032 CGTATGAGGCGACTTTGAGAG 58.545 52.381 0.00 0.00 44.43 3.20
420 421 2.796383 CGTATGAGGCGACTTTGAGAGG 60.796 54.545 0.00 0.00 44.43 3.69
421 422 1.270907 ATGAGGCGACTTTGAGAGGT 58.729 50.000 0.00 0.00 44.43 3.85
422 423 0.603569 TGAGGCGACTTTGAGAGGTC 59.396 55.000 0.00 0.00 44.43 3.85
423 424 0.108567 GAGGCGACTTTGAGAGGTCC 60.109 60.000 0.00 0.00 44.43 4.46
424 425 1.446272 GGCGACTTTGAGAGGTCCG 60.446 63.158 0.00 0.00 0.00 4.79
425 426 1.446272 GCGACTTTGAGAGGTCCGG 60.446 63.158 0.00 0.00 0.00 5.14
426 427 1.446272 CGACTTTGAGAGGTCCGGC 60.446 63.158 0.00 0.00 0.00 6.13
427 428 1.878656 CGACTTTGAGAGGTCCGGCT 61.879 60.000 0.00 0.00 0.00 5.52
428 429 1.183549 GACTTTGAGAGGTCCGGCTA 58.816 55.000 0.00 0.00 0.00 3.93
429 430 1.757699 GACTTTGAGAGGTCCGGCTAT 59.242 52.381 0.00 0.00 0.00 2.97
430 431 2.957006 GACTTTGAGAGGTCCGGCTATA 59.043 50.000 0.00 0.00 0.00 1.31
431 432 2.959707 ACTTTGAGAGGTCCGGCTATAG 59.040 50.000 0.00 0.00 0.00 1.31
432 433 3.223435 CTTTGAGAGGTCCGGCTATAGA 58.777 50.000 3.21 0.00 0.00 1.98
433 434 2.570415 TGAGAGGTCCGGCTATAGAG 57.430 55.000 3.21 0.00 0.00 2.43
434 435 1.074084 TGAGAGGTCCGGCTATAGAGG 59.926 57.143 3.21 6.15 0.00 3.69
435 436 0.251430 AGAGGTCCGGCTATAGAGGC 60.251 60.000 3.21 0.00 44.80 4.70
436 437 0.251430 GAGGTCCGGCTATAGAGGCT 60.251 60.000 9.43 0.00 46.06 4.58
736 738 2.125106 CGGGCCTTAGCTGGACAC 60.125 66.667 0.84 0.00 36.67 3.67
1283 1317 1.979155 GGTGGGCTTTCCTCCTTGC 60.979 63.158 0.00 0.00 43.95 4.01
1327 1361 3.046374 TCTTCAGTAATCTAAGGGGCCC 58.954 50.000 17.12 17.12 0.00 5.80
1343 1377 1.256812 GCCCAGCTTGGTGTATGTTT 58.743 50.000 5.61 0.00 35.17 2.83
1376 1410 8.523523 TGATAGCAAATTTTGTGTCTGAAATG 57.476 30.769 10.65 0.00 0.00 2.32
1386 1420 5.694231 TGTGTCTGAAATGTGAAATCCAG 57.306 39.130 0.00 0.00 0.00 3.86
1425 1459 1.680735 TCCGCAAGCAACATCAGTTTT 59.319 42.857 0.00 0.00 35.28 2.43
1426 1460 2.100584 TCCGCAAGCAACATCAGTTTTT 59.899 40.909 0.00 0.00 35.28 1.94
1466 1501 9.981460 AAAGGACCTTTCAATATTAACTGAGAT 57.019 29.630 14.03 0.00 0.00 2.75
1934 1971 8.740906 CAGACTATATATAATATGGCCTACGGG 58.259 40.741 3.32 0.00 0.00 5.28
1937 1974 2.781681 ATAATATGGCCTACGGGTGC 57.218 50.000 3.32 0.00 34.45 5.01
2122 2159 8.880244 ACATTCTAGTCATTTATGGGCTACATA 58.120 33.333 0.00 0.00 41.03 2.29
2158 2195 3.438781 TGTGTATCAAAAGTGAATCCGGC 59.561 43.478 0.00 0.00 37.30 6.13
2176 2213 1.571919 GCACTTGCTACTATGGGTCG 58.428 55.000 0.00 0.00 38.21 4.79
2270 2311 8.522830 AGAACAAATCAATGTGTATAAGTTGGG 58.477 33.333 0.00 0.00 32.81 4.12
2332 2373 3.070159 CCACACTCTTCTGAAGTCCTGAA 59.930 47.826 16.43 0.00 0.00 3.02
2362 2403 7.258441 TCTCGTTTGAGATAGATCGATTTGTT 58.742 34.615 0.00 0.00 46.25 2.83
2553 2749 1.521457 GTCGGATGGCGCATCAAGA 60.521 57.895 10.83 10.67 42.13 3.02
2588 2784 2.890311 TGTCATGTGGTTTTGGGTGATC 59.110 45.455 0.00 0.00 0.00 2.92
2591 2787 1.890876 TGTGGTTTTGGGTGATCTCG 58.109 50.000 0.00 0.00 0.00 4.04
2597 2793 0.037697 TTTGGGTGATCTCGGTCGTG 60.038 55.000 0.00 0.00 0.00 4.35
2603 2799 1.037579 TGATCTCGGTCGTGGCAGAT 61.038 55.000 0.00 0.00 0.00 2.90
2855 3051 4.054671 GCAACTGCTACCTATCAGATGAC 58.945 47.826 4.12 0.00 35.83 3.06
2945 3141 6.036953 CCTTCTGTAGAAAGCATCAGATTGAC 59.963 42.308 0.00 0.00 36.91 3.18
2957 3153 0.036010 AGATTGACCCAAGAGCACCG 60.036 55.000 0.00 0.00 0.00 4.94
3099 3295 0.322997 TAACACCATCCGCCAAAGGG 60.323 55.000 0.00 0.00 37.18 3.95
3382 3597 2.366266 TGTGGTTCCACTAGGTGTACAC 59.634 50.000 18.01 18.01 37.78 2.90
3396 3611 2.663602 GTGTACACGAGAGCAATGACAG 59.336 50.000 10.84 0.00 0.00 3.51
3398 3613 0.319728 ACACGAGAGCAATGACAGCT 59.680 50.000 0.00 0.00 46.82 4.24
3414 3629 1.528586 CAGCTCACTCAACTTTGACGG 59.471 52.381 0.00 0.00 32.90 4.79
3461 3676 4.189231 GGTATATGTGGCTCGTGAAAAGT 58.811 43.478 0.00 0.00 0.00 2.66
3499 3714 2.622942 CAACAAAAAGGCAGGTGCTCTA 59.377 45.455 1.26 0.00 41.70 2.43
3532 3747 4.409718 ACGTATCTCAGCTCTACTCTCA 57.590 45.455 0.00 0.00 0.00 3.27
3562 3777 7.205297 CACCTTTCTTCATCAACTTTGATTGT 58.795 34.615 1.52 0.00 45.13 2.71
3594 3809 1.614903 CAACAATTCAGAAGCCCTGCA 59.385 47.619 0.00 0.00 42.62 4.41
3676 3891 5.499139 TCCCGCAAAGATTTGATAATGTC 57.501 39.130 9.44 0.00 40.55 3.06
3682 3897 5.066505 GCAAAGATTTGATAATGTCGACCCT 59.933 40.000 14.12 2.11 40.55 4.34
3709 3924 3.135167 ACCGGTATGGAAACCATAATCGT 59.865 43.478 4.49 12.46 46.46 3.73
3748 3963 0.249120 TGTACGGCCTCAATGGTCAG 59.751 55.000 0.00 0.00 41.50 3.51
3808 4023 2.434336 TCGCCTTGCACTCTATGGTATT 59.566 45.455 0.00 0.00 0.00 1.89
3859 4074 5.306532 TCATAGTCGACAGTAACAGGTTC 57.693 43.478 19.50 0.00 0.00 3.62
4012 4227 0.689745 CGACAGATTGGGGTAGGGGA 60.690 60.000 0.00 0.00 0.00 4.81
4255 4470 1.005748 CTTGGTGCAGCGACTCTCA 60.006 57.895 11.91 0.00 0.00 3.27
4336 4551 1.004044 CCAGTGATGTGGCTTCTTCCT 59.996 52.381 0.00 0.00 0.00 3.36
4398 4613 5.972935 TGTGTACCTTATCATCGTCATTGT 58.027 37.500 0.00 0.00 0.00 2.71
4456 4671 1.474077 GCAGGAATCACATGGTTGGAC 59.526 52.381 0.00 0.00 0.00 4.02
4507 4722 1.419374 GCTCGGTAACTGCATATCCG 58.581 55.000 11.63 11.63 42.12 4.18
4535 4750 2.556189 GTGTTGCACATGGTGGTGAATA 59.444 45.455 0.00 0.00 41.32 1.75
4633 4848 4.603131 AGATGTATGAAGTGCATTGGGTT 58.397 39.130 0.00 0.00 38.44 4.11
4643 4858 1.006878 TGCATTGGGTTCCCATGATGA 59.993 47.619 20.47 4.59 35.84 2.92
4706 4921 6.656632 TTGGTGTAGCAATTGGTAAATCAA 57.343 33.333 23.54 23.54 34.87 2.57
4789 5004 3.091545 CAACCTGTGGATTATGGTGCTT 58.908 45.455 0.00 0.00 32.53 3.91
4837 5052 1.683319 GGAAGATGGGCCAAGAGAACC 60.683 57.143 11.89 6.19 0.00 3.62
4864 5079 6.926630 ATCCTCTTCATCTTACTACCCATC 57.073 41.667 0.00 0.00 0.00 3.51
4898 5113 4.345288 CACTTCATTGATGTACATTGGCG 58.655 43.478 10.30 0.11 32.69 5.69
4972 5187 7.195374 ACCTTAGCATACTTTTCTATGGACA 57.805 36.000 0.00 0.00 33.97 4.02
4980 5195 9.277783 GCATACTTTTCTATGGACAACTATGAT 57.722 33.333 8.04 0.00 0.00 2.45
5073 5288 1.980765 TGGACTCTTGAGTGGCAGAAT 59.019 47.619 8.11 0.00 0.00 2.40
5075 5290 3.196469 TGGACTCTTGAGTGGCAGAATAG 59.804 47.826 8.11 0.00 0.00 1.73
5077 5292 4.402793 GGACTCTTGAGTGGCAGAATAGTA 59.597 45.833 8.11 0.00 0.00 1.82
5079 5294 4.160626 ACTCTTGAGTGGCAGAATAGTACC 59.839 45.833 2.11 0.00 0.00 3.34
5101 5317 1.178534 AACCATGGTTGTTCCCGCAG 61.179 55.000 29.32 0.00 36.91 5.18
5105 5321 1.068333 CATGGTTGTTCCCGCAGAAAG 60.068 52.381 0.00 0.00 35.85 2.62
5124 5340 8.246180 GCAGAAAGAATCATGGTTTCTAATTGA 58.754 33.333 10.88 0.00 38.24 2.57
5130 5346 9.358406 AGAATCATGGTTTCTAATTGATGCATA 57.642 29.630 0.00 0.00 31.75 3.14
5132 5348 7.275888 TCATGGTTTCTAATTGATGCATACC 57.724 36.000 0.00 0.18 0.00 2.73
5133 5349 7.062322 TCATGGTTTCTAATTGATGCATACCT 58.938 34.615 0.00 0.00 0.00 3.08
5149 5365 2.505982 CTGCGTGTAGGGATGGGG 59.494 66.667 0.00 0.00 0.00 4.96
5150 5366 2.039787 TGCGTGTAGGGATGGGGA 59.960 61.111 0.00 0.00 0.00 4.81
5152 5368 1.071471 GCGTGTAGGGATGGGGATG 59.929 63.158 0.00 0.00 0.00 3.51
5153 5369 1.407656 GCGTGTAGGGATGGGGATGA 61.408 60.000 0.00 0.00 0.00 2.92
5194 5410 3.928992 CAGAGCAGCTAGATGTTTTTCGA 59.071 43.478 10.15 0.00 0.00 3.71
5198 5414 6.017109 AGAGCAGCTAGATGTTTTTCGAAAAA 60.017 34.615 27.64 27.64 35.67 1.94
5199 5415 6.681777 AGCAGCTAGATGTTTTTCGAAAAAT 58.318 32.000 32.07 20.89 39.75 1.82
5241 5457 4.576216 TTTTTAGCATTTGGAGCGAACA 57.424 36.364 0.00 0.00 37.01 3.18
5268 5487 5.487433 TCAAACACGTTGTATCTCATGGAT 58.513 37.500 0.00 0.00 38.47 3.41
5270 5489 4.471904 ACACGTTGTATCTCATGGATGT 57.528 40.909 6.87 0.00 35.98 3.06
5281 5500 3.459227 TCTCATGGATGTATCCCAAAGCA 59.541 43.478 8.37 0.00 46.59 3.91
5283 5502 4.146564 TCATGGATGTATCCCAAAGCATG 58.853 43.478 8.37 4.77 46.59 4.06
5312 6299 3.076621 CTGAGCAAACTACAATCTGGCA 58.923 45.455 0.00 0.00 0.00 4.92
5322 6309 4.770531 ACTACAATCTGGCAGTAGTACACA 59.229 41.667 15.27 0.00 44.68 3.72
5332 6319 4.321750 GGCAGTAGTACACAGTTTGCTCTA 60.322 45.833 2.52 0.00 0.00 2.43
5348 6335 0.315251 TCTAGATGGCAATCCGAGCG 59.685 55.000 0.00 0.00 32.77 5.03
5371 6358 5.621329 CGAACACTTTTGGGGATGGTAAATC 60.621 44.000 0.00 0.00 0.00 2.17
5379 6366 4.277476 TGGGGATGGTAAATCATGTTGTC 58.723 43.478 0.00 0.00 0.00 3.18
5382 6369 3.315191 GGATGGTAAATCATGTTGTCGGG 59.685 47.826 0.00 0.00 0.00 5.14
5389 6376 2.044053 ATGTTGTCGGGGCATGGG 60.044 61.111 0.00 0.00 0.00 4.00
5390 6377 2.917897 ATGTTGTCGGGGCATGGGT 61.918 57.895 0.00 0.00 0.00 4.51
5406 6393 4.692228 CATGGGTATTGCCACCATTTTAC 58.308 43.478 0.00 0.00 42.08 2.01
5435 6422 5.048083 GTGAATGTCCAGTAAATGCTTTCCA 60.048 40.000 0.00 0.00 0.00 3.53
5488 6475 4.153655 GGTTGTTTGGTCGGAGAAATAGTC 59.846 45.833 0.00 0.00 39.69 2.59
5517 6504 4.578516 CCAAGTGGTCAATGTCAAACACTA 59.421 41.667 0.00 0.00 38.13 2.74
5518 6505 5.277974 CCAAGTGGTCAATGTCAAACACTAG 60.278 44.000 0.00 0.00 38.13 2.57
5519 6506 4.389374 AGTGGTCAATGTCAAACACTAGG 58.611 43.478 0.00 0.00 37.41 3.02
5520 6507 3.502211 GTGGTCAATGTCAAACACTAGGG 59.498 47.826 0.00 0.00 0.00 3.53
5555 6542 6.368779 AACTTAGGTGTATGTTAGCCTTGA 57.631 37.500 0.00 0.00 32.90 3.02
5578 6565 7.707104 TGAAGTTGATGAAAAGGAAACTCTTC 58.293 34.615 0.00 0.00 42.68 2.87
5598 6585 9.462606 ACTCTTCGGGAAAATGTCTTAAATAAT 57.537 29.630 0.00 0.00 0.00 1.28
5635 6622 1.838715 AGATCATTCTGCCTGAGTGCT 59.161 47.619 0.00 0.00 33.13 4.40
5638 6625 3.701205 TCATTCTGCCTGAGTGCTAAA 57.299 42.857 0.00 0.00 33.13 1.85
5639 6626 3.338249 TCATTCTGCCTGAGTGCTAAAC 58.662 45.455 0.00 0.00 33.13 2.01
5640 6627 2.928801 TTCTGCCTGAGTGCTAAACA 57.071 45.000 0.00 0.00 0.00 2.83
5642 6629 3.423539 TCTGCCTGAGTGCTAAACATT 57.576 42.857 0.00 0.00 0.00 2.71
5643 6630 3.076621 TCTGCCTGAGTGCTAAACATTG 58.923 45.455 0.00 0.00 0.00 2.82
5644 6631 3.076621 CTGCCTGAGTGCTAAACATTGA 58.923 45.455 0.00 0.00 0.00 2.57
5679 6667 2.283101 TGGGCAGCGGCAGATTTT 60.283 55.556 11.88 0.00 43.71 1.82
5680 6668 1.907807 TGGGCAGCGGCAGATTTTT 60.908 52.632 11.88 0.00 43.71 1.94
5706 6694 8.738645 TTTCCTTTCAGAAAGCTTATAGATCC 57.261 34.615 16.51 0.00 37.18 3.36
5710 6698 6.465439 TTCAGAAAGCTTATAGATCCGACA 57.535 37.500 0.00 0.00 0.00 4.35
5743 6733 1.541588 GGCATTCAAGTGAACACCCTC 59.458 52.381 0.00 0.00 36.80 4.30
5746 6736 2.638480 TTCAAGTGAACACCCTCAGG 57.362 50.000 1.11 0.00 40.04 3.86
5759 6749 0.460987 CCTCAGGCACGTTGGATCTC 60.461 60.000 0.00 0.00 0.00 2.75
5765 6755 4.578913 ACGTTGGATCTCGTGCAG 57.421 55.556 9.43 0.00 38.85 4.41
5768 6758 0.994995 CGTTGGATCTCGTGCAGAAG 59.005 55.000 0.00 0.00 33.62 2.85
5770 6760 2.415491 CGTTGGATCTCGTGCAGAAGTA 60.415 50.000 0.00 0.00 33.62 2.24
5778 6768 3.570975 TCTCGTGCAGAAGTACCAAAGTA 59.429 43.478 0.00 0.00 0.00 2.24
5783 6773 4.689345 GTGCAGAAGTACCAAAGTATTCGT 59.311 41.667 0.00 0.00 0.00 3.85
5784 6774 4.927425 TGCAGAAGTACCAAAGTATTCGTC 59.073 41.667 0.00 0.00 0.00 4.20
5789 6779 3.583966 AGTACCAAAGTATTCGTCCCCAA 59.416 43.478 0.00 0.00 0.00 4.12
5790 6780 3.512219 ACCAAAGTATTCGTCCCCAAA 57.488 42.857 0.00 0.00 0.00 3.28
5793 6783 3.057806 CCAAAGTATTCGTCCCCAAACAC 60.058 47.826 0.00 0.00 0.00 3.32
5800 6790 0.817634 CGTCCCCAAACACTGCTTCA 60.818 55.000 0.00 0.00 0.00 3.02
5806 6796 1.267806 CCAAACACTGCTTCAAGCGAT 59.732 47.619 4.57 0.00 46.26 4.58
5810 6800 2.611518 ACACTGCTTCAAGCGATCTAC 58.388 47.619 4.57 0.00 46.26 2.59
5818 6808 1.264557 TCAAGCGATCTACGAGCTAGC 59.735 52.381 6.62 6.62 45.77 3.42
5828 6818 1.390565 ACGAGCTAGCGGTAGTTCAT 58.609 50.000 29.61 18.02 36.53 2.57
5859 6852 3.340814 AGATGGAATGAGCGAACACTT 57.659 42.857 0.00 0.00 0.00 3.16
5870 6863 1.401539 GCGAACACTTTTGGAGATGGC 60.402 52.381 0.00 0.00 0.00 4.40
5881 6874 6.719370 ACTTTTGGAGATGGCAAACTATGTTA 59.281 34.615 0.00 0.00 0.00 2.41
5921 6914 8.628630 TTGTCACCATTTTACATTGATGTAGA 57.371 30.769 4.24 0.00 43.44 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.418226 CCACTCGCTACTGCTAATTTTAGTAG 59.582 42.308 12.21 12.21 45.39 2.57
43 44 6.095860 TCCACTCGCTACTGCTAATTTTAGTA 59.904 38.462 0.00 0.00 36.97 1.82
44 45 5.105473 TCCACTCGCTACTGCTAATTTTAGT 60.105 40.000 0.00 0.00 36.97 2.24
45 46 5.348986 TCCACTCGCTACTGCTAATTTTAG 58.651 41.667 0.00 0.00 36.97 1.85
46 47 5.126545 TCTCCACTCGCTACTGCTAATTTTA 59.873 40.000 0.00 0.00 36.97 1.52
47 48 4.081642 TCTCCACTCGCTACTGCTAATTTT 60.082 41.667 0.00 0.00 36.97 1.82
48 49 3.447586 TCTCCACTCGCTACTGCTAATTT 59.552 43.478 0.00 0.00 36.97 1.82
49 50 3.024547 TCTCCACTCGCTACTGCTAATT 58.975 45.455 0.00 0.00 36.97 1.40
50 51 2.656002 TCTCCACTCGCTACTGCTAAT 58.344 47.619 0.00 0.00 36.97 1.73
51 52 2.124277 TCTCCACTCGCTACTGCTAA 57.876 50.000 0.00 0.00 36.97 3.09
52 53 2.124277 TTCTCCACTCGCTACTGCTA 57.876 50.000 0.00 0.00 36.97 3.49
53 54 1.203523 CTTTCTCCACTCGCTACTGCT 59.796 52.381 0.00 0.00 36.97 4.24
54 55 1.067495 ACTTTCTCCACTCGCTACTGC 60.067 52.381 0.00 0.00 0.00 4.40
55 56 3.305398 AACTTTCTCCACTCGCTACTG 57.695 47.619 0.00 0.00 0.00 2.74
56 57 3.119424 GCTAACTTTCTCCACTCGCTACT 60.119 47.826 0.00 0.00 0.00 2.57
57 58 3.180613 GCTAACTTTCTCCACTCGCTAC 58.819 50.000 0.00 0.00 0.00 3.58
58 59 2.823747 TGCTAACTTTCTCCACTCGCTA 59.176 45.455 0.00 0.00 0.00 4.26
59 60 1.618837 TGCTAACTTTCTCCACTCGCT 59.381 47.619 0.00 0.00 0.00 4.93
60 61 1.996191 CTGCTAACTTTCTCCACTCGC 59.004 52.381 0.00 0.00 0.00 5.03
61 62 1.996191 GCTGCTAACTTTCTCCACTCG 59.004 52.381 0.00 0.00 0.00 4.18
62 63 2.999355 CTGCTGCTAACTTTCTCCACTC 59.001 50.000 0.00 0.00 0.00 3.51
63 64 2.873649 GCTGCTGCTAACTTTCTCCACT 60.874 50.000 8.53 0.00 36.03 4.00
64 65 1.466558 GCTGCTGCTAACTTTCTCCAC 59.533 52.381 8.53 0.00 36.03 4.02
65 66 1.813513 GCTGCTGCTAACTTTCTCCA 58.186 50.000 8.53 0.00 36.03 3.86
66 67 0.723981 CGCTGCTGCTAACTTTCTCC 59.276 55.000 14.03 0.00 36.97 3.71
67 68 1.391826 GACGCTGCTGCTAACTTTCTC 59.608 52.381 14.03 0.00 36.97 2.87
68 69 1.270305 TGACGCTGCTGCTAACTTTCT 60.270 47.619 14.03 0.00 36.97 2.52
69 70 1.136224 GTGACGCTGCTGCTAACTTTC 60.136 52.381 14.03 1.52 36.97 2.62
70 71 0.868406 GTGACGCTGCTGCTAACTTT 59.132 50.000 14.03 0.00 36.97 2.66
71 72 0.249868 TGTGACGCTGCTGCTAACTT 60.250 50.000 14.03 0.00 36.97 2.66
72 73 0.668706 CTGTGACGCTGCTGCTAACT 60.669 55.000 14.03 0.00 36.97 2.24
73 74 0.946221 ACTGTGACGCTGCTGCTAAC 60.946 55.000 14.03 9.17 36.97 2.34
74 75 0.601057 TACTGTGACGCTGCTGCTAA 59.399 50.000 14.03 0.00 36.97 3.09
75 76 0.171231 CTACTGTGACGCTGCTGCTA 59.829 55.000 14.03 0.00 36.97 3.49
76 77 1.080230 CTACTGTGACGCTGCTGCT 60.080 57.895 14.03 0.67 36.97 4.24
77 78 2.734673 GCTACTGTGACGCTGCTGC 61.735 63.158 5.34 5.34 0.00 5.25
78 79 1.349982 CTGCTACTGTGACGCTGCTG 61.350 60.000 0.00 0.00 0.00 4.41
79 80 1.080230 CTGCTACTGTGACGCTGCT 60.080 57.895 0.00 0.00 0.00 4.24
80 81 0.109272 TACTGCTACTGTGACGCTGC 60.109 55.000 0.00 0.00 0.00 5.25
81 82 1.901538 CTACTGCTACTGTGACGCTG 58.098 55.000 0.00 0.00 0.00 5.18
82 83 0.171455 GCTACTGCTACTGTGACGCT 59.829 55.000 0.00 0.00 36.03 5.07
83 84 1.134530 CGCTACTGCTACTGTGACGC 61.135 60.000 0.00 0.00 36.97 5.19
84 85 1.134530 GCGCTACTGCTACTGTGACG 61.135 60.000 0.00 0.00 36.97 4.35
85 86 1.134530 CGCGCTACTGCTACTGTGAC 61.135 60.000 5.56 0.00 36.97 3.67
86 87 1.136774 CGCGCTACTGCTACTGTGA 59.863 57.895 5.56 0.00 36.97 3.58
87 88 1.134530 GACGCGCTACTGCTACTGTG 61.135 60.000 5.73 0.00 36.97 3.66
88 89 1.136984 GACGCGCTACTGCTACTGT 59.863 57.895 5.73 0.00 36.97 3.55
89 90 1.586564 GGACGCGCTACTGCTACTG 60.587 63.158 5.73 0.00 36.97 2.74
90 91 1.994507 CTGGACGCGCTACTGCTACT 61.995 60.000 5.73 0.00 36.97 2.57
91 92 1.586564 CTGGACGCGCTACTGCTAC 60.587 63.158 5.73 0.00 36.97 3.58
92 93 2.771639 CCTGGACGCGCTACTGCTA 61.772 63.158 5.73 0.00 36.97 3.49
93 94 4.135153 CCTGGACGCGCTACTGCT 62.135 66.667 5.73 0.00 36.97 4.24
95 96 3.932580 TTGCCTGGACGCGCTACTG 62.933 63.158 5.73 0.10 0.00 2.74
96 97 3.019003 ATTGCCTGGACGCGCTACT 62.019 57.895 5.73 0.00 0.00 2.57
97 98 2.511600 ATTGCCTGGACGCGCTAC 60.512 61.111 5.73 0.00 0.00 3.58
98 99 2.511373 CATTGCCTGGACGCGCTA 60.511 61.111 5.73 0.00 0.00 4.26
107 108 4.105733 TCTTGCGCGCATTGCCTG 62.106 61.111 36.83 19.45 42.08 4.85
108 109 3.807538 CTCTTGCGCGCATTGCCT 61.808 61.111 36.83 0.00 42.08 4.75
110 111 2.384391 ATAGCTCTTGCGCGCATTGC 62.384 55.000 36.83 33.58 45.42 3.56
111 112 0.028505 AATAGCTCTTGCGCGCATTG 59.971 50.000 36.83 28.70 45.42 2.82
112 113 1.528586 CTAATAGCTCTTGCGCGCATT 59.471 47.619 36.83 25.42 45.42 3.56
113 114 1.143305 CTAATAGCTCTTGCGCGCAT 58.857 50.000 36.83 22.42 45.42 4.73
114 115 1.490693 GCTAATAGCTCTTGCGCGCA 61.491 55.000 33.09 33.09 45.42 6.09
115 116 1.202816 GCTAATAGCTCTTGCGCGC 59.797 57.895 27.26 27.26 45.42 6.86
116 117 0.506080 CTGCTAATAGCTCTTGCGCG 59.494 55.000 13.88 0.00 42.97 6.86
117 118 1.576356 ACTGCTAATAGCTCTTGCGC 58.424 50.000 13.88 0.00 42.97 6.09
118 119 2.728839 GCTACTGCTAATAGCTCTTGCG 59.271 50.000 13.88 0.00 42.97 4.85
119 120 2.728839 CGCTACTGCTAATAGCTCTTGC 59.271 50.000 13.88 11.22 42.97 4.01
120 121 4.225984 CTCGCTACTGCTAATAGCTCTTG 58.774 47.826 13.88 4.10 42.97 3.02
121 122 3.305064 GCTCGCTACTGCTAATAGCTCTT 60.305 47.826 13.88 0.36 42.97 2.85
122 123 2.227865 GCTCGCTACTGCTAATAGCTCT 59.772 50.000 13.88 0.95 42.97 4.09
123 124 2.227865 AGCTCGCTACTGCTAATAGCTC 59.772 50.000 13.88 0.00 42.97 4.09
124 125 2.235016 AGCTCGCTACTGCTAATAGCT 58.765 47.619 13.88 0.00 42.97 3.32
125 126 2.715737 AGCTCGCTACTGCTAATAGC 57.284 50.000 5.12 5.12 42.82 2.97
126 127 3.004839 TGGAAGCTCGCTACTGCTAATAG 59.995 47.826 0.00 0.00 38.75 1.73
127 128 2.956333 TGGAAGCTCGCTACTGCTAATA 59.044 45.455 0.00 0.00 38.75 0.98
128 129 1.757118 TGGAAGCTCGCTACTGCTAAT 59.243 47.619 0.00 0.00 38.75 1.73
129 130 1.182667 TGGAAGCTCGCTACTGCTAA 58.817 50.000 0.00 0.00 38.75 3.09
130 131 1.067669 CATGGAAGCTCGCTACTGCTA 59.932 52.381 0.00 0.00 38.75 3.49
131 132 0.179089 CATGGAAGCTCGCTACTGCT 60.179 55.000 0.00 0.00 41.82 4.24
132 133 0.179100 TCATGGAAGCTCGCTACTGC 60.179 55.000 0.00 0.00 0.00 4.40
133 134 2.200067 CTTCATGGAAGCTCGCTACTG 58.800 52.381 0.00 0.00 32.78 2.74
134 135 2.593346 CTTCATGGAAGCTCGCTACT 57.407 50.000 0.00 0.00 32.78 2.57
143 144 1.136147 GCAGCGTGCTTCATGGAAG 59.864 57.895 1.67 1.67 40.96 3.46
144 145 3.266964 GCAGCGTGCTTCATGGAA 58.733 55.556 0.00 0.00 40.96 3.53
156 157 4.876334 GCTATACAAGTGTAGCAGCAGCG 61.876 52.174 19.78 0.00 45.73 5.18
157 158 2.541762 GCTATACAAGTGTAGCAGCAGC 59.458 50.000 19.78 0.00 45.73 5.25
163 164 3.975670 CGCTACTGCTATACAAGTGTAGC 59.024 47.826 18.42 18.42 46.34 3.58
164 165 3.975670 GCGCTACTGCTATACAAGTGTAG 59.024 47.826 0.00 0.23 37.40 2.74
165 166 3.547413 CGCGCTACTGCTATACAAGTGTA 60.547 47.826 5.56 0.00 36.97 2.90
166 167 2.794981 CGCGCTACTGCTATACAAGTGT 60.795 50.000 5.56 0.00 36.97 3.55
167 168 1.781429 CGCGCTACTGCTATACAAGTG 59.219 52.381 5.56 0.00 36.97 3.16
168 169 1.269102 CCGCGCTACTGCTATACAAGT 60.269 52.381 5.56 0.00 36.97 3.16
169 170 1.409412 CCGCGCTACTGCTATACAAG 58.591 55.000 5.56 0.00 36.97 3.16
170 171 0.031585 CCCGCGCTACTGCTATACAA 59.968 55.000 5.56 0.00 36.97 2.41
171 172 1.105167 ACCCGCGCTACTGCTATACA 61.105 55.000 5.56 0.00 36.97 2.29
172 173 0.663568 CACCCGCGCTACTGCTATAC 60.664 60.000 5.56 0.00 36.97 1.47
173 174 1.105167 ACACCCGCGCTACTGCTATA 61.105 55.000 5.56 0.00 36.97 1.31
174 175 2.417516 CACCCGCGCTACTGCTAT 59.582 61.111 5.56 0.00 36.97 2.97
175 176 3.066190 ACACCCGCGCTACTGCTA 61.066 61.111 5.56 0.00 36.97 3.49
176 177 4.742201 CACACCCGCGCTACTGCT 62.742 66.667 5.56 0.00 36.97 4.24
194 195 3.481903 CCGTAGCAGCAGCACGTG 61.482 66.667 12.28 12.28 45.49 4.49
195 196 4.742201 CCCGTAGCAGCAGCACGT 62.742 66.667 18.85 0.00 45.49 4.49
196 197 2.829043 TAACCCGTAGCAGCAGCACG 62.829 60.000 15.41 15.41 45.49 5.34
197 198 1.079405 TAACCCGTAGCAGCAGCAC 60.079 57.895 3.17 0.00 45.49 4.40
198 199 1.218047 CTAACCCGTAGCAGCAGCA 59.782 57.895 3.17 0.00 45.49 4.41
199 200 0.391263 AACTAACCCGTAGCAGCAGC 60.391 55.000 0.00 0.00 42.56 5.25
200 201 1.337823 ACAACTAACCCGTAGCAGCAG 60.338 52.381 0.00 0.00 32.45 4.24
201 202 0.682852 ACAACTAACCCGTAGCAGCA 59.317 50.000 0.00 0.00 32.45 4.41
202 203 2.537401 CTACAACTAACCCGTAGCAGC 58.463 52.381 0.00 0.00 32.45 5.25
206 207 1.553308 GCGCTACAACTAACCCGTAG 58.447 55.000 0.00 0.00 36.51 3.51
207 208 0.173255 GGCGCTACAACTAACCCGTA 59.827 55.000 7.64 0.00 0.00 4.02
208 209 1.079612 GGCGCTACAACTAACCCGT 60.080 57.895 7.64 0.00 0.00 5.28
209 210 0.390735 AAGGCGCTACAACTAACCCG 60.391 55.000 7.64 0.00 0.00 5.28
210 211 2.678471 TAAGGCGCTACAACTAACCC 57.322 50.000 7.64 0.00 0.00 4.11
211 212 6.856135 AATTATAAGGCGCTACAACTAACC 57.144 37.500 7.64 0.00 0.00 2.85
212 213 7.508134 GCTAATTATAAGGCGCTACAACTAAC 58.492 38.462 7.64 0.00 0.00 2.34
213 214 6.364165 CGCTAATTATAAGGCGCTACAACTAA 59.636 38.462 7.64 0.00 41.08 2.24
214 215 5.860182 CGCTAATTATAAGGCGCTACAACTA 59.140 40.000 7.64 0.00 41.08 2.24
215 216 4.684703 CGCTAATTATAAGGCGCTACAACT 59.315 41.667 7.64 0.00 41.08 3.16
216 217 4.942765 CGCTAATTATAAGGCGCTACAAC 58.057 43.478 7.64 0.00 41.08 3.32
224 225 3.127030 GGGACATGCGCTAATTATAAGGC 59.873 47.826 9.73 0.00 0.00 4.35
225 226 3.689649 GGGGACATGCGCTAATTATAAGG 59.310 47.826 9.73 0.00 0.00 2.69
226 227 3.370978 CGGGGACATGCGCTAATTATAAG 59.629 47.826 9.73 0.00 0.00 1.73
227 228 3.331150 CGGGGACATGCGCTAATTATAA 58.669 45.455 9.73 0.00 0.00 0.98
228 229 2.933492 GCGGGGACATGCGCTAATTATA 60.933 50.000 9.73 0.00 33.97 0.98
229 230 1.808411 CGGGGACATGCGCTAATTAT 58.192 50.000 9.73 0.00 0.00 1.28
230 231 0.882927 GCGGGGACATGCGCTAATTA 60.883 55.000 9.73 0.00 33.97 1.40
231 232 2.186826 GCGGGGACATGCGCTAATT 61.187 57.895 9.73 0.00 33.97 1.40
232 233 2.591715 GCGGGGACATGCGCTAAT 60.592 61.111 9.73 0.00 33.97 1.73
238 239 2.638330 TTAGTAGCGCGGGGACATGC 62.638 60.000 8.83 0.00 0.00 4.06
239 240 0.033504 ATTAGTAGCGCGGGGACATG 59.966 55.000 8.83 0.00 0.00 3.21
240 241 0.033504 CATTAGTAGCGCGGGGACAT 59.966 55.000 8.83 0.00 0.00 3.06
241 242 1.324740 ACATTAGTAGCGCGGGGACA 61.325 55.000 8.83 0.00 0.00 4.02
242 243 0.670162 TACATTAGTAGCGCGGGGAC 59.330 55.000 8.83 0.00 0.00 4.46
243 244 0.670162 GTACATTAGTAGCGCGGGGA 59.330 55.000 8.83 0.00 0.00 4.81
244 245 0.319297 GGTACATTAGTAGCGCGGGG 60.319 60.000 8.83 0.00 38.76 5.73
245 246 3.190337 GGTACATTAGTAGCGCGGG 57.810 57.895 8.83 0.00 38.76 6.13
250 251 5.506982 CGTGGGTTCTAGGTACATTAGTAGC 60.507 48.000 0.00 0.18 46.46 3.58
251 252 5.506982 GCGTGGGTTCTAGGTACATTAGTAG 60.507 48.000 0.00 0.00 0.00 2.57
252 253 4.339247 GCGTGGGTTCTAGGTACATTAGTA 59.661 45.833 0.00 0.00 0.00 1.82
253 254 3.131755 GCGTGGGTTCTAGGTACATTAGT 59.868 47.826 0.00 0.00 0.00 2.24
254 255 3.383825 AGCGTGGGTTCTAGGTACATTAG 59.616 47.826 0.00 0.00 0.00 1.73
255 256 3.131577 CAGCGTGGGTTCTAGGTACATTA 59.868 47.826 0.00 0.00 0.00 1.90
256 257 2.093658 CAGCGTGGGTTCTAGGTACATT 60.094 50.000 0.00 0.00 0.00 2.71
257 258 1.480954 CAGCGTGGGTTCTAGGTACAT 59.519 52.381 0.00 0.00 0.00 2.29
258 259 0.892755 CAGCGTGGGTTCTAGGTACA 59.107 55.000 0.00 0.00 0.00 2.90
259 260 0.459759 GCAGCGTGGGTTCTAGGTAC 60.460 60.000 0.00 0.00 0.00 3.34
260 261 0.613853 AGCAGCGTGGGTTCTAGGTA 60.614 55.000 0.00 0.00 0.00 3.08
261 262 1.913762 AGCAGCGTGGGTTCTAGGT 60.914 57.895 0.00 0.00 0.00 3.08
262 263 1.448540 CAGCAGCGTGGGTTCTAGG 60.449 63.158 0.00 0.00 0.00 3.02
263 264 2.103042 GCAGCAGCGTGGGTTCTAG 61.103 63.158 0.00 0.00 0.00 2.43
264 265 2.047274 GCAGCAGCGTGGGTTCTA 60.047 61.111 0.00 0.00 0.00 2.10
274 275 1.661498 GGGAAAAGCCTAGCAGCAGC 61.661 60.000 0.00 0.00 37.73 5.25
275 276 0.034670 AGGGAAAAGCCTAGCAGCAG 60.035 55.000 0.00 0.00 36.66 4.24
276 277 1.210478 CTAGGGAAAAGCCTAGCAGCA 59.790 52.381 0.00 0.00 36.66 4.41
277 278 1.210722 ACTAGGGAAAAGCCTAGCAGC 59.789 52.381 0.00 0.00 39.48 5.25
278 279 3.707102 ACTACTAGGGAAAAGCCTAGCAG 59.293 47.826 0.00 0.00 39.48 4.24
279 280 3.451178 CACTACTAGGGAAAAGCCTAGCA 59.549 47.826 0.00 0.00 39.48 3.49
280 281 3.181464 CCACTACTAGGGAAAAGCCTAGC 60.181 52.174 0.00 0.00 39.48 3.42
281 282 4.674281 CCACTACTAGGGAAAAGCCTAG 57.326 50.000 0.00 0.00 41.06 3.02
292 293 1.623542 GGCACCCACCCACTACTAGG 61.624 65.000 0.00 0.00 0.00 3.02
293 294 1.905512 GGCACCCACCCACTACTAG 59.094 63.158 0.00 0.00 0.00 2.57
294 295 1.985662 CGGCACCCACCCACTACTA 60.986 63.158 0.00 0.00 0.00 1.82
295 296 3.319198 CGGCACCCACCCACTACT 61.319 66.667 0.00 0.00 0.00 2.57
303 304 4.008933 AGACTGAGCGGCACCCAC 62.009 66.667 1.45 0.00 0.00 4.61
304 305 4.007644 CAGACTGAGCGGCACCCA 62.008 66.667 1.45 0.00 0.00 4.51
305 306 4.767255 CCAGACTGAGCGGCACCC 62.767 72.222 3.32 0.00 0.00 4.61
306 307 4.767255 CCCAGACTGAGCGGCACC 62.767 72.222 3.32 0.00 0.00 5.01
312 313 1.294659 CTCAAACGCCCAGACTGAGC 61.295 60.000 3.32 0.30 0.00 4.26
313 314 0.671781 CCTCAAACGCCCAGACTGAG 60.672 60.000 3.32 0.00 34.30 3.35
314 315 1.371183 CCTCAAACGCCCAGACTGA 59.629 57.895 3.32 0.00 0.00 3.41
315 316 2.328099 GCCTCAAACGCCCAGACTG 61.328 63.158 0.00 0.00 0.00 3.51
316 317 2.032681 GCCTCAAACGCCCAGACT 59.967 61.111 0.00 0.00 0.00 3.24
317 318 3.056328 GGCCTCAAACGCCCAGAC 61.056 66.667 0.00 0.00 40.78 3.51
322 323 3.292159 AAACGGGCCTCAAACGCC 61.292 61.111 0.84 0.00 46.29 5.68
323 324 2.050442 CAAACGGGCCTCAAACGC 60.050 61.111 0.84 0.00 0.00 4.84
324 325 1.574428 CTCAAACGGGCCTCAAACG 59.426 57.895 0.84 0.00 0.00 3.60
325 326 1.956802 CCTCAAACGGGCCTCAAAC 59.043 57.895 0.84 0.00 0.00 2.93
326 327 1.901464 GCCTCAAACGGGCCTCAAA 60.901 57.895 0.84 0.00 43.49 2.69
327 328 2.282180 GCCTCAAACGGGCCTCAA 60.282 61.111 0.84 0.00 43.49 3.02
328 329 4.697756 CGCCTCAAACGGGCCTCA 62.698 66.667 0.84 0.00 46.24 3.86
329 330 4.699522 ACGCCTCAAACGGGCCTC 62.700 66.667 0.84 0.00 46.24 4.70
330 331 3.785122 AAACGCCTCAAACGGGCCT 62.785 57.895 0.84 0.00 46.24 5.19
331 332 3.292159 AAACGCCTCAAACGGGCC 61.292 61.111 0.00 0.00 46.24 5.80
332 333 2.050442 CAAACGCCTCAAACGGGC 60.050 61.111 0.00 0.00 45.57 6.13
333 334 1.164041 AGACAAACGCCTCAAACGGG 61.164 55.000 0.00 0.00 34.00 5.28
334 335 0.041312 CAGACAAACGCCTCAAACGG 60.041 55.000 0.00 0.00 34.00 4.44
335 336 0.041312 CCAGACAAACGCCTCAAACG 60.041 55.000 0.00 0.00 0.00 3.60
336 337 0.310854 CCCAGACAAACGCCTCAAAC 59.689 55.000 0.00 0.00 0.00 2.93
337 338 0.106918 ACCCAGACAAACGCCTCAAA 60.107 50.000 0.00 0.00 0.00 2.69
338 339 0.534203 GACCCAGACAAACGCCTCAA 60.534 55.000 0.00 0.00 0.00 3.02
339 340 1.070786 GACCCAGACAAACGCCTCA 59.929 57.895 0.00 0.00 0.00 3.86
340 341 2.027625 CGACCCAGACAAACGCCTC 61.028 63.158 0.00 0.00 0.00 4.70
341 342 2.030562 CGACCCAGACAAACGCCT 59.969 61.111 0.00 0.00 0.00 5.52
342 343 1.161563 TTTCGACCCAGACAAACGCC 61.162 55.000 0.00 0.00 0.00 5.68
343 344 0.658897 TTTTCGACCCAGACAAACGC 59.341 50.000 0.00 0.00 0.00 4.84
360 361 2.752903 GTCACTGCCCGGTCATATTTTT 59.247 45.455 0.00 0.00 0.00 1.94
361 362 2.365582 GTCACTGCCCGGTCATATTTT 58.634 47.619 0.00 0.00 0.00 1.82
362 363 1.408266 GGTCACTGCCCGGTCATATTT 60.408 52.381 0.00 0.00 0.00 1.40
363 364 0.180406 GGTCACTGCCCGGTCATATT 59.820 55.000 0.00 0.00 0.00 1.28
364 365 0.980754 TGGTCACTGCCCGGTCATAT 60.981 55.000 0.00 0.00 0.00 1.78
365 366 1.610967 TGGTCACTGCCCGGTCATA 60.611 57.895 0.00 0.00 0.00 2.15
366 367 2.927856 TGGTCACTGCCCGGTCAT 60.928 61.111 0.00 0.00 0.00 3.06
367 368 3.625897 CTGGTCACTGCCCGGTCA 61.626 66.667 0.00 0.00 0.00 4.02
368 369 4.394712 CCTGGTCACTGCCCGGTC 62.395 72.222 0.00 0.00 0.00 4.79
375 376 3.957586 TGGGCTGCCTGGTCACTG 61.958 66.667 19.68 0.00 0.00 3.66
376 377 3.958860 GTGGGCTGCCTGGTCACT 61.959 66.667 19.68 0.00 0.00 3.41
390 391 4.235762 CCTCATACGCCCGGGTGG 62.236 72.222 36.25 23.85 37.09 4.61
391 392 4.910585 GCCTCATACGCCCGGGTG 62.911 72.222 32.55 32.55 0.00 4.61
394 395 4.944372 GTCGCCTCATACGCCCGG 62.944 72.222 0.00 0.00 0.00 5.73
395 396 2.901051 AAAGTCGCCTCATACGCCCG 62.901 60.000 0.00 0.00 0.00 6.13
396 397 1.153429 AAAGTCGCCTCATACGCCC 60.153 57.895 0.00 0.00 0.00 6.13
397 398 0.459585 TCAAAGTCGCCTCATACGCC 60.460 55.000 0.00 0.00 0.00 5.68
398 399 0.924090 CTCAAAGTCGCCTCATACGC 59.076 55.000 0.00 0.00 0.00 4.42
399 400 2.455032 CTCTCAAAGTCGCCTCATACG 58.545 52.381 0.00 0.00 0.00 3.06
400 401 2.166664 ACCTCTCAAAGTCGCCTCATAC 59.833 50.000 0.00 0.00 0.00 2.39
401 402 2.427453 GACCTCTCAAAGTCGCCTCATA 59.573 50.000 0.00 0.00 0.00 2.15
402 403 1.205893 GACCTCTCAAAGTCGCCTCAT 59.794 52.381 0.00 0.00 0.00 2.90
403 404 0.603569 GACCTCTCAAAGTCGCCTCA 59.396 55.000 0.00 0.00 0.00 3.86
404 405 0.108567 GGACCTCTCAAAGTCGCCTC 60.109 60.000 0.00 0.00 33.66 4.70
405 406 1.878656 CGGACCTCTCAAAGTCGCCT 61.879 60.000 0.00 0.00 33.66 5.52
406 407 1.446272 CGGACCTCTCAAAGTCGCC 60.446 63.158 0.00 0.00 33.66 5.54
407 408 1.446272 CCGGACCTCTCAAAGTCGC 60.446 63.158 0.00 0.00 33.66 5.19
408 409 1.446272 GCCGGACCTCTCAAAGTCG 60.446 63.158 5.05 0.00 33.66 4.18
409 410 1.183549 TAGCCGGACCTCTCAAAGTC 58.816 55.000 5.05 0.00 0.00 3.01
410 411 1.867363 ATAGCCGGACCTCTCAAAGT 58.133 50.000 5.05 0.00 0.00 2.66
411 412 3.223435 TCTATAGCCGGACCTCTCAAAG 58.777 50.000 5.05 0.00 0.00 2.77
412 413 3.223435 CTCTATAGCCGGACCTCTCAAA 58.777 50.000 5.05 0.00 0.00 2.69
413 414 2.489255 CCTCTATAGCCGGACCTCTCAA 60.489 54.545 5.05 0.00 0.00 3.02
414 415 1.074084 CCTCTATAGCCGGACCTCTCA 59.926 57.143 5.05 0.00 0.00 3.27
415 416 1.828979 CCTCTATAGCCGGACCTCTC 58.171 60.000 5.05 0.00 0.00 3.20
416 417 0.251430 GCCTCTATAGCCGGACCTCT 60.251 60.000 5.05 0.00 0.00 3.69
417 418 0.251430 AGCCTCTATAGCCGGACCTC 60.251 60.000 5.05 0.00 0.00 3.85
418 419 0.251430 GAGCCTCTATAGCCGGACCT 60.251 60.000 5.05 0.00 0.00 3.85
419 420 0.251430 AGAGCCTCTATAGCCGGACC 60.251 60.000 5.05 0.00 0.00 4.46
420 421 1.623163 AAGAGCCTCTATAGCCGGAC 58.377 55.000 5.05 0.00 0.00 4.79
421 422 3.520691 TTAAGAGCCTCTATAGCCGGA 57.479 47.619 5.05 0.00 0.00 5.14
422 423 3.118956 CCATTAAGAGCCTCTATAGCCGG 60.119 52.174 0.00 0.00 0.00 6.13
423 424 3.677424 GCCATTAAGAGCCTCTATAGCCG 60.677 52.174 0.00 0.00 0.00 5.52
424 425 3.369997 GGCCATTAAGAGCCTCTATAGCC 60.370 52.174 10.57 0.00 46.14 3.93
425 426 3.867857 GGCCATTAAGAGCCTCTATAGC 58.132 50.000 10.57 0.00 46.14 2.97
434 435 3.443099 GGACAAATGGCCATTAAGAGC 57.557 47.619 30.84 20.34 44.76 4.09
654 656 6.872020 ACAGATGTATATTACCGGTTGCATAC 59.128 38.462 15.04 17.30 0.00 2.39
736 738 5.793952 GGTGTATTATATACACACTCTCGCG 59.206 44.000 23.72 0.00 46.96 5.87
841 848 2.348660 CTACTAGCTAGCTCCGCGTAT 58.651 52.381 23.26 2.63 0.00 3.06
856 863 4.086457 TGAGGGCGATGATAATGCTACTA 58.914 43.478 0.00 0.00 0.00 1.82
857 864 2.899900 TGAGGGCGATGATAATGCTACT 59.100 45.455 0.00 0.00 0.00 2.57
858 865 3.257393 CTGAGGGCGATGATAATGCTAC 58.743 50.000 0.00 0.00 0.00 3.58
1283 1317 0.450583 ATGCACTGCAGAGCGAATTG 59.549 50.000 27.36 12.11 43.65 2.32
1386 1420 7.303634 TGCGGAGATTTAAGATAAAGTTCAC 57.696 36.000 0.00 0.00 0.00 3.18
1425 1459 3.634910 GGTCCTTTGCCTCAAACACTTAA 59.365 43.478 0.00 0.00 0.00 1.85
1426 1460 3.117663 AGGTCCTTTGCCTCAAACACTTA 60.118 43.478 0.00 0.00 0.00 2.24
1466 1501 6.921914 TCGTTTCAACCCAGAAAAGTTTTTA 58.078 32.000 1.64 0.00 39.05 1.52
1932 1969 4.382291 TGTATTGTATATGGTTCGCACCC 58.618 43.478 0.56 0.00 43.49 4.61
1934 1971 5.851177 GCATTGTATTGTATATGGTTCGCAC 59.149 40.000 0.00 0.00 0.00 5.34
1937 1974 6.953843 TGTGCATTGTATTGTATATGGTTCG 58.046 36.000 0.00 0.00 0.00 3.95
2155 2192 0.178068 ACCCATAGTAGCAAGTGCCG 59.822 55.000 0.00 0.00 43.38 5.69
2158 2195 3.068165 TGATCGACCCATAGTAGCAAGTG 59.932 47.826 0.00 0.00 0.00 3.16
2162 2199 4.955811 AATTGATCGACCCATAGTAGCA 57.044 40.909 0.00 0.00 0.00 3.49
2332 2373 6.796426 TCGATCTATCTCAAACGAGAATGTT 58.204 36.000 0.00 0.00 42.72 2.71
2409 2450 4.215908 AGCTATGCAAGTGCCTACTACTA 58.784 43.478 0.00 0.00 41.18 1.82
2410 2451 3.034635 AGCTATGCAAGTGCCTACTACT 58.965 45.455 0.00 0.00 41.18 2.57
2459 2655 4.396166 AGCGGAGAAAAATGTAATCAGTGG 59.604 41.667 0.00 0.00 0.00 4.00
2588 2784 1.807165 CACATCTGCCACGACCGAG 60.807 63.158 0.00 0.00 0.00 4.63
2591 2787 2.034879 CCACACATCTGCCACGACC 61.035 63.158 0.00 0.00 0.00 4.79
2597 2793 1.826385 AGCTAAACCACACATCTGCC 58.174 50.000 0.00 0.00 0.00 4.85
2603 2799 3.694072 GCCATGATAAGCTAAACCACACA 59.306 43.478 0.00 0.00 0.00 3.72
2633 2829 4.044308 TGGGATTATACTTTGGGAGCTGA 58.956 43.478 0.00 0.00 0.00 4.26
2855 3051 0.617413 AGAGGACCAATGAGCCACTG 59.383 55.000 0.00 0.00 0.00 3.66
2945 3141 2.335712 GCTTTCCGGTGCTCTTGGG 61.336 63.158 0.00 0.00 0.00 4.12
2957 3153 5.066634 GCCCTCTAGTTCAAAATAGCTTTCC 59.933 44.000 0.00 0.00 0.00 3.13
3099 3295 7.658575 TGTCCCTGTTTTACTATAAATATCCGC 59.341 37.037 0.00 0.00 0.00 5.54
3110 3306 6.442541 TCATCCTTTGTCCCTGTTTTACTA 57.557 37.500 0.00 0.00 0.00 1.82
3376 3591 2.926586 GCTGTCATTGCTCTCGTGTACA 60.927 50.000 0.00 0.00 0.00 2.90
3396 3611 1.261619 CACCGTCAAAGTTGAGTGAGC 59.738 52.381 7.36 0.00 36.19 4.26
3398 3613 2.675844 CAACACCGTCAAAGTTGAGTGA 59.324 45.455 16.14 0.00 43.93 3.41
3414 3629 1.356624 GGCAGGCGCATATCAACAC 59.643 57.895 10.83 0.00 41.24 3.32
3461 3676 4.314440 GTGCTCGACACCTGGGCA 62.314 66.667 0.00 0.00 44.02 5.36
3499 3714 4.615949 CTGAGATACGTAGCTCTGCATTT 58.384 43.478 33.48 3.61 39.36 2.32
3532 3747 5.796424 AGTTGATGAAGAAAGGTGCATTT 57.204 34.783 0.00 0.00 0.00 2.32
3562 3777 5.863965 TCTGAATTGTTGATGTAGTGGTCA 58.136 37.500 0.00 0.00 0.00 4.02
3676 3891 0.666913 CATACCGGTCTGTAGGGTCG 59.333 60.000 12.40 0.00 35.28 4.79
3682 3897 2.538222 TGGTTTCCATACCGGTCTGTA 58.462 47.619 12.40 0.00 41.28 2.74
3748 3963 1.751437 CAAGGTAAGTAGGCCCTTGC 58.249 55.000 0.00 0.00 46.16 4.01
3808 4023 0.907486 CTCTCCAGCAAGGTGGATCA 59.093 55.000 20.09 9.97 45.87 2.92
3932 4147 9.381033 CTCTTCAAGAAATGAATCATCTAGTGT 57.619 33.333 0.00 0.00 46.62 3.55
4012 4227 8.522830 GTTGCCATATTGTATATGTAGCCAATT 58.477 33.333 6.07 0.00 0.00 2.32
4114 4329 3.660111 GGTGCAGTGCCACGGAAC 61.660 66.667 13.72 0.00 36.59 3.62
4282 4497 7.438459 GCGTACATTAGGATAAAGAGTGATGTT 59.562 37.037 0.00 0.00 0.00 2.71
4336 4551 7.770366 TGGTCTCTGTACAAGTATTTCTGTA 57.230 36.000 0.00 0.00 0.00 2.74
4398 4613 3.300239 TGCCAATCACATGGATCATCA 57.700 42.857 0.00 0.00 43.54 3.07
4633 4848 1.671166 CGCCGGTATCATCATGGGA 59.329 57.895 1.90 0.00 0.00 4.37
4643 4858 0.542805 AATACCACAACCGCCGGTAT 59.457 50.000 10.30 0.00 45.79 2.73
4706 4921 5.013495 CAGACCATGTCCCCATGTATAAGAT 59.987 44.000 2.38 0.00 45.83 2.40
4789 5004 2.094286 CGCCAATGCAAATGGGTAAAGA 60.094 45.455 20.00 0.00 38.44 2.52
4837 5052 5.279056 GGGTAGTAAGATGAAGAGGATTCCG 60.279 48.000 0.00 0.00 0.00 4.30
4879 5094 3.376859 GGACGCCAATGTACATCAATGAA 59.623 43.478 9.23 0.00 0.00 2.57
4880 5095 2.942376 GGACGCCAATGTACATCAATGA 59.058 45.455 9.23 0.00 0.00 2.57
5052 5267 1.423584 TCTGCCACTCAAGAGTCCAA 58.576 50.000 0.00 0.00 40.20 3.53
5053 5268 1.423584 TTCTGCCACTCAAGAGTCCA 58.576 50.000 0.00 0.42 40.20 4.02
5059 5274 4.471904 TGGTACTATTCTGCCACTCAAG 57.528 45.455 0.00 0.00 0.00 3.02
5064 5279 4.076394 TGGTTTTGGTACTATTCTGCCAC 58.924 43.478 0.00 0.00 0.00 5.01
5079 5294 1.871822 GCGGGAACAACCATGGTTTTG 60.872 52.381 27.82 20.35 41.20 2.44
5101 5317 9.028185 GCATCAATTAGAAACCATGATTCTTTC 57.972 33.333 15.86 7.65 38.13 2.62
5105 5321 9.403110 GTATGCATCAATTAGAAACCATGATTC 57.597 33.333 0.19 0.00 0.00 2.52
5130 5346 2.367202 CCCATCCCTACACGCAGGT 61.367 63.158 0.00 0.00 33.44 4.00
5132 5348 1.410850 ATCCCCATCCCTACACGCAG 61.411 60.000 0.00 0.00 0.00 5.18
5133 5349 1.383943 ATCCCCATCCCTACACGCA 60.384 57.895 0.00 0.00 0.00 5.24
5149 5365 3.385755 CCACCCCATCTCCATTTTTCATC 59.614 47.826 0.00 0.00 0.00 2.92
5150 5366 3.377573 CCACCCCATCTCCATTTTTCAT 58.622 45.455 0.00 0.00 0.00 2.57
5152 5368 1.482182 GCCACCCCATCTCCATTTTTC 59.518 52.381 0.00 0.00 0.00 2.29
5153 5369 1.203288 TGCCACCCCATCTCCATTTTT 60.203 47.619 0.00 0.00 0.00 1.94
5231 5447 1.234821 GTTTGATGGTGTTCGCTCCA 58.765 50.000 0.00 0.00 43.86 3.86
5232 5448 1.069227 GTGTTTGATGGTGTTCGCTCC 60.069 52.381 0.00 0.00 0.00 4.70
5241 5457 4.637276 TGAGATACAACGTGTTTGATGGT 58.363 39.130 0.00 0.00 38.73 3.55
5290 5509 3.244526 TGCCAGATTGTAGTTTGCTCAGA 60.245 43.478 0.00 0.00 0.00 3.27
5291 5510 3.076621 TGCCAGATTGTAGTTTGCTCAG 58.923 45.455 0.00 0.00 0.00 3.35
5292 5511 3.076621 CTGCCAGATTGTAGTTTGCTCA 58.923 45.455 0.00 0.00 0.00 4.26
5312 6299 6.127591 CCATCTAGAGCAAACTGTGTACTACT 60.128 42.308 0.00 0.00 0.00 2.57
5332 6319 0.811616 GTTCGCTCGGATTGCCATCT 60.812 55.000 0.00 0.00 0.00 2.90
5348 6335 5.245075 TGATTTACCATCCCCAAAAGTGTTC 59.755 40.000 0.00 0.00 0.00 3.18
5371 6358 2.417257 CCCATGCCCCGACAACATG 61.417 63.158 0.00 0.00 40.67 3.21
5389 6376 4.092816 CGAACGTAAAATGGTGGCAATAC 58.907 43.478 0.00 0.00 0.00 1.89
5390 6377 3.752222 ACGAACGTAAAATGGTGGCAATA 59.248 39.130 0.00 0.00 0.00 1.90
5406 6393 4.637968 CATTTACTGGACATTCACGAACG 58.362 43.478 0.00 0.00 0.00 3.95
5449 6436 6.426025 CCAAACAACCCTAACTACTCTGTAAC 59.574 42.308 0.00 0.00 0.00 2.50
5450 6437 6.100134 ACCAAACAACCCTAACTACTCTGTAA 59.900 38.462 0.00 0.00 0.00 2.41
5460 6447 2.148768 CTCCGACCAAACAACCCTAAC 58.851 52.381 0.00 0.00 0.00 2.34
5488 6475 5.199024 TGACATTGACCACTTGGAAAATG 57.801 39.130 18.26 18.26 42.10 2.32
5519 6506 2.848694 ACCTAAGTTAGCCTTTACCCCC 59.151 50.000 4.22 0.00 34.46 5.40
5520 6507 3.265221 ACACCTAAGTTAGCCTTTACCCC 59.735 47.826 4.22 0.00 34.46 4.95
5555 6542 6.238759 CCGAAGAGTTTCCTTTTCATCAACTT 60.239 38.462 0.00 0.00 32.67 2.66
5598 6585 9.623000 AGAATGATCTGTCATCATTTTGTCATA 57.377 29.630 10.42 0.00 45.59 2.15
5623 6610 3.076621 TCAATGTTTAGCACTCAGGCAG 58.923 45.455 0.00 0.00 35.83 4.85
5680 6668 9.178758 GGATCTATAAGCTTTCTGAAAGGAAAA 57.821 33.333 26.47 0.00 38.93 2.29
5681 6669 7.495934 CGGATCTATAAGCTTTCTGAAAGGAAA 59.504 37.037 26.47 0.00 38.93 3.13
5723 6711 1.541588 GAGGGTGTTCACTTGAATGCC 59.458 52.381 2.98 1.29 36.33 4.40
5725 6713 2.816087 CCTGAGGGTGTTCACTTGAATG 59.184 50.000 0.00 0.00 36.33 2.67
5726 6714 2.815589 GCCTGAGGGTGTTCACTTGAAT 60.816 50.000 0.00 0.00 34.01 2.57
5727 6715 1.476833 GCCTGAGGGTGTTCACTTGAA 60.477 52.381 0.00 0.00 34.45 2.69
5729 6717 0.179020 TGCCTGAGGGTGTTCACTTG 60.179 55.000 0.00 0.00 34.45 3.16
5730 6718 0.179018 GTGCCTGAGGGTGTTCACTT 60.179 55.000 0.00 0.00 34.45 3.16
5737 6727 2.469465 ATCCAACGTGCCTGAGGGTG 62.469 60.000 0.00 0.00 34.45 4.61
5743 6733 1.079819 ACGAGATCCAACGTGCCTG 60.080 57.895 8.89 0.00 41.17 4.85
5759 6749 4.201589 CGAATACTTTGGTACTTCTGCACG 60.202 45.833 0.00 0.00 0.00 5.34
5765 6755 4.186926 GGGGACGAATACTTTGGTACTTC 58.813 47.826 0.00 0.00 0.00 3.01
5768 6758 3.615224 TGGGGACGAATACTTTGGTAC 57.385 47.619 0.00 0.00 0.00 3.34
5770 6760 3.151554 GTTTGGGGACGAATACTTTGGT 58.848 45.455 0.00 0.00 35.78 3.67
5778 6768 0.110486 AGCAGTGTTTGGGGACGAAT 59.890 50.000 0.00 0.00 35.78 3.34
5783 6773 1.691196 CTTGAAGCAGTGTTTGGGGA 58.309 50.000 0.00 0.00 0.00 4.81
5784 6774 0.032540 GCTTGAAGCAGTGTTTGGGG 59.967 55.000 13.09 0.00 41.89 4.96
5789 6779 2.175878 AGATCGCTTGAAGCAGTGTT 57.824 45.000 18.22 0.00 42.58 3.32
5790 6780 2.611518 GTAGATCGCTTGAAGCAGTGT 58.388 47.619 18.22 5.88 42.58 3.55
5793 6783 2.115595 CTCGTAGATCGCTTGAAGCAG 58.884 52.381 18.22 10.06 37.08 4.24
5800 6790 0.236187 CGCTAGCTCGTAGATCGCTT 59.764 55.000 13.93 0.00 38.92 4.68
5806 6796 2.208431 GAACTACCGCTAGCTCGTAGA 58.792 52.381 30.48 9.05 0.00 2.59
5810 6800 1.600663 CCATGAACTACCGCTAGCTCG 60.601 57.143 13.93 5.10 0.00 5.03
5818 6808 1.135083 AGAGCGAACCATGAACTACCG 60.135 52.381 0.00 0.00 0.00 4.02
5828 6818 3.031013 TCATTCCATCTAGAGCGAACCA 58.969 45.455 0.00 0.00 0.00 3.67
5859 6852 6.150976 CAGTAACATAGTTTGCCATCTCCAAA 59.849 38.462 0.00 0.00 0.00 3.28
5870 6863 4.201950 GCCATGCTCCAGTAACATAGTTTG 60.202 45.833 0.00 0.00 0.00 2.93
5881 6874 1.180029 GACAATTGCCATGCTCCAGT 58.820 50.000 5.05 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.