Multiple sequence alignment - TraesCS2D01G216400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G216400 chr2D 100.000 2132 0 0 1 2132 179265403 179267534 0.000000e+00 3938
1 TraesCS2D01G216400 chr2D 95.535 963 29 9 1 954 449173134 449172177 0.000000e+00 1528
2 TraesCS2D01G216400 chr7D 97.082 994 24 5 1144 2132 233924319 233925312 0.000000e+00 1670
3 TraesCS2D01G216400 chr5B 96.371 992 31 5 1144 2132 628863879 628864868 0.000000e+00 1628
4 TraesCS2D01G216400 chr5B 96.165 991 33 5 1144 2132 625250029 625251016 0.000000e+00 1615
5 TraesCS2D01G216400 chr5D 96.065 991 34 5 1144 2131 315251767 315250779 0.000000e+00 1609
6 TraesCS2D01G216400 chr5D 95.879 995 30 7 1144 2132 234111182 234112171 0.000000e+00 1600
7 TraesCS2D01G216400 chr5D 95.218 962 36 7 1 954 276323396 276324355 0.000000e+00 1513
8 TraesCS2D01G216400 chr5D 97.436 195 5 0 949 1143 329163420 329163226 1.220000e-87 333
9 TraesCS2D01G216400 chr5D 97.436 195 5 0 949 1143 560873711 560873517 1.220000e-87 333
10 TraesCS2D01G216400 chr4D 95.968 992 35 5 1144 2131 456417363 456418353 0.000000e+00 1605
11 TraesCS2D01G216400 chr4D 95.766 992 36 6 1144 2131 294316592 294315603 0.000000e+00 1594
12 TraesCS2D01G216400 chr4D 95.332 964 32 8 1 954 112602695 112603655 0.000000e+00 1519
13 TraesCS2D01G216400 chr4D 95.312 960 36 6 1 954 437491372 437492328 0.000000e+00 1515
14 TraesCS2D01G216400 chr1D 95.863 991 36 5 1144 2131 327067203 327066215 0.000000e+00 1598
15 TraesCS2D01G216400 chr1D 95.625 960 29 10 1 954 488475991 488475039 0.000000e+00 1528
16 TraesCS2D01G216400 chr1D 95.327 963 31 9 1 954 90742363 90743320 0.000000e+00 1517
17 TraesCS2D01G216400 chr1D 96.923 195 6 0 949 1143 254499241 254499047 5.670000e-86 327
18 TraesCS2D01G216400 chr6D 95.766 992 36 5 1144 2131 144528563 144527574 0.000000e+00 1594
19 TraesCS2D01G216400 chr3D 95.747 964 28 8 1 954 403897533 403898493 0.000000e+00 1541
20 TraesCS2D01G216400 chr3D 95.634 962 30 8 1 954 189492164 189491207 0.000000e+00 1533
21 TraesCS2D01G216400 chr3D 95.502 956 34 7 1 954 487926940 487927888 0.000000e+00 1519
22 TraesCS2D01G216400 chrUn 97.949 195 4 0 949 1143 30306108 30306302 2.620000e-89 339
23 TraesCS2D01G216400 chrUn 97.436 195 5 0 949 1143 445811820 445812014 1.220000e-87 333
24 TraesCS2D01G216400 chr3B 97.949 195 4 0 949 1143 201514344 201514150 2.620000e-89 339
25 TraesCS2D01G216400 chr3B 97.949 195 4 0 949 1143 201515393 201515199 2.620000e-89 339
26 TraesCS2D01G216400 chr3B 97.949 195 4 0 949 1143 201515923 201515729 2.620000e-89 339
27 TraesCS2D01G216400 chr3B 97.436 195 5 0 949 1143 201514881 201514687 1.220000e-87 333


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G216400 chr2D 179265403 179267534 2131 False 3938.0 3938 100.00000 1 2132 1 chr2D.!!$F1 2131
1 TraesCS2D01G216400 chr2D 449172177 449173134 957 True 1528.0 1528 95.53500 1 954 1 chr2D.!!$R1 953
2 TraesCS2D01G216400 chr7D 233924319 233925312 993 False 1670.0 1670 97.08200 1144 2132 1 chr7D.!!$F1 988
3 TraesCS2D01G216400 chr5B 628863879 628864868 989 False 1628.0 1628 96.37100 1144 2132 1 chr5B.!!$F2 988
4 TraesCS2D01G216400 chr5B 625250029 625251016 987 False 1615.0 1615 96.16500 1144 2132 1 chr5B.!!$F1 988
5 TraesCS2D01G216400 chr5D 315250779 315251767 988 True 1609.0 1609 96.06500 1144 2131 1 chr5D.!!$R1 987
6 TraesCS2D01G216400 chr5D 234111182 234112171 989 False 1600.0 1600 95.87900 1144 2132 1 chr5D.!!$F1 988
7 TraesCS2D01G216400 chr5D 276323396 276324355 959 False 1513.0 1513 95.21800 1 954 1 chr5D.!!$F2 953
8 TraesCS2D01G216400 chr4D 456417363 456418353 990 False 1605.0 1605 95.96800 1144 2131 1 chr4D.!!$F3 987
9 TraesCS2D01G216400 chr4D 294315603 294316592 989 True 1594.0 1594 95.76600 1144 2131 1 chr4D.!!$R1 987
10 TraesCS2D01G216400 chr4D 112602695 112603655 960 False 1519.0 1519 95.33200 1 954 1 chr4D.!!$F1 953
11 TraesCS2D01G216400 chr4D 437491372 437492328 956 False 1515.0 1515 95.31200 1 954 1 chr4D.!!$F2 953
12 TraesCS2D01G216400 chr1D 327066215 327067203 988 True 1598.0 1598 95.86300 1144 2131 1 chr1D.!!$R2 987
13 TraesCS2D01G216400 chr1D 488475039 488475991 952 True 1528.0 1528 95.62500 1 954 1 chr1D.!!$R3 953
14 TraesCS2D01G216400 chr1D 90742363 90743320 957 False 1517.0 1517 95.32700 1 954 1 chr1D.!!$F1 953
15 TraesCS2D01G216400 chr6D 144527574 144528563 989 True 1594.0 1594 95.76600 1144 2131 1 chr6D.!!$R1 987
16 TraesCS2D01G216400 chr3D 403897533 403898493 960 False 1541.0 1541 95.74700 1 954 1 chr3D.!!$F1 953
17 TraesCS2D01G216400 chr3D 189491207 189492164 957 True 1533.0 1533 95.63400 1 954 1 chr3D.!!$R1 953
18 TraesCS2D01G216400 chr3D 487926940 487927888 948 False 1519.0 1519 95.50200 1 954 1 chr3D.!!$F2 953
19 TraesCS2D01G216400 chr3B 201514150 201515923 1773 True 337.5 339 97.82075 949 1143 4 chr3B.!!$R1 194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 949 0.03601 CACCGAGGAAGTTCCATGCT 60.036 55.0 23.87 2.61 39.61 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 2970 0.248743 CCATGCCATGCGTCATGTTC 60.249 55.0 15.46 9.36 39.94 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 0.878416 TACCGCCTCAAATGCAACAC 59.122 50.000 0.00 0.00 0.00 3.32
213 215 4.808895 CCATGCTCGTGCTATTTAGTACAA 59.191 41.667 11.19 0.00 38.60 2.41
387 389 2.040012 TCACCGTGCCCTGGTAAAAATA 59.960 45.455 0.00 0.00 37.72 1.40
391 393 2.286772 CGTGCCCTGGTAAAAATATCGC 60.287 50.000 0.00 0.00 0.00 4.58
393 395 1.265905 GCCCTGGTAAAAATATCGCCG 59.734 52.381 0.00 0.00 0.00 6.46
441 443 2.484264 CACCGAGGAAGTTTCATGGTTC 59.516 50.000 0.00 0.00 0.00 3.62
485 491 2.325661 AGGGGGTCCAAATTTCCTTG 57.674 50.000 0.00 0.00 34.83 3.61
486 492 1.507742 AGGGGGTCCAAATTTCCTTGT 59.492 47.619 0.00 0.00 34.83 3.16
487 493 1.899814 GGGGGTCCAAATTTCCTTGTC 59.100 52.381 0.00 0.00 0.00 3.18
633 644 9.288124 TGCACATAATTCAAGTTCAAATAATCG 57.712 29.630 0.00 0.00 0.00 3.34
634 645 8.745837 GCACATAATTCAAGTTCAAATAATCGG 58.254 33.333 0.00 0.00 0.00 4.18
635 646 9.787532 CACATAATTCAAGTTCAAATAATCGGT 57.212 29.630 0.00 0.00 0.00 4.69
636 647 9.787532 ACATAATTCAAGTTCAAATAATCGGTG 57.212 29.630 0.00 0.00 0.00 4.94
637 648 8.745837 CATAATTCAAGTTCAAATAATCGGTGC 58.254 33.333 0.00 0.00 0.00 5.01
638 649 5.697473 TTCAAGTTCAAATAATCGGTGCA 57.303 34.783 0.00 0.00 0.00 4.57
639 650 5.895636 TCAAGTTCAAATAATCGGTGCAT 57.104 34.783 0.00 0.00 0.00 3.96
640 651 5.639757 TCAAGTTCAAATAATCGGTGCATG 58.360 37.500 0.00 0.00 0.00 4.06
641 652 5.414144 TCAAGTTCAAATAATCGGTGCATGA 59.586 36.000 0.00 0.00 0.00 3.07
642 653 5.895636 AGTTCAAATAATCGGTGCATGAA 57.104 34.783 0.00 0.00 0.00 2.57
643 654 6.266168 AGTTCAAATAATCGGTGCATGAAA 57.734 33.333 0.00 0.00 0.00 2.69
644 655 6.324819 AGTTCAAATAATCGGTGCATGAAAG 58.675 36.000 0.00 0.00 0.00 2.62
645 656 5.247507 TCAAATAATCGGTGCATGAAAGG 57.752 39.130 0.00 0.00 0.00 3.11
646 657 4.097741 TCAAATAATCGGTGCATGAAAGGG 59.902 41.667 0.00 0.00 0.00 3.95
647 658 2.799126 TAATCGGTGCATGAAAGGGT 57.201 45.000 0.00 0.00 0.00 4.34
648 659 1.463674 AATCGGTGCATGAAAGGGTC 58.536 50.000 0.00 0.00 0.00 4.46
649 660 0.394352 ATCGGTGCATGAAAGGGTCC 60.394 55.000 0.00 0.00 0.00 4.46
650 661 1.303236 CGGTGCATGAAAGGGTCCA 60.303 57.895 0.00 0.00 0.00 4.02
651 662 1.586154 CGGTGCATGAAAGGGTCCAC 61.586 60.000 0.00 0.00 0.00 4.02
652 663 0.539438 GGTGCATGAAAGGGTCCACA 60.539 55.000 0.00 0.00 0.00 4.17
653 664 1.327303 GTGCATGAAAGGGTCCACAA 58.673 50.000 0.00 0.00 0.00 3.33
654 665 1.270550 GTGCATGAAAGGGTCCACAAG 59.729 52.381 0.00 0.00 0.00 3.16
655 666 1.144708 TGCATGAAAGGGTCCACAAGA 59.855 47.619 0.00 0.00 0.00 3.02
656 667 2.238521 GCATGAAAGGGTCCACAAGAA 58.761 47.619 0.00 0.00 0.00 2.52
657 668 2.029918 GCATGAAAGGGTCCACAAGAAC 60.030 50.000 0.00 0.00 0.00 3.01
658 669 1.961793 TGAAAGGGTCCACAAGAACG 58.038 50.000 0.00 0.00 30.31 3.95
659 670 1.235724 GAAAGGGTCCACAAGAACGG 58.764 55.000 0.00 0.00 30.31 4.44
660 671 0.822121 AAAGGGTCCACAAGAACGGC 60.822 55.000 0.00 0.00 30.31 5.68
661 672 2.671963 GGGTCCACAAGAACGGCC 60.672 66.667 0.00 0.00 30.31 6.13
662 673 2.430367 GGTCCACAAGAACGGCCT 59.570 61.111 0.00 0.00 0.00 5.19
663 674 1.966451 GGTCCACAAGAACGGCCTG 60.966 63.158 0.00 0.00 0.00 4.85
664 675 1.966451 GTCCACAAGAACGGCCTGG 60.966 63.158 0.00 0.00 0.00 4.45
665 676 2.144078 TCCACAAGAACGGCCTGGA 61.144 57.895 0.00 1.61 0.00 3.86
666 677 1.228124 CCACAAGAACGGCCTGGAA 60.228 57.895 0.00 0.00 0.00 3.53
667 678 0.821711 CCACAAGAACGGCCTGGAAA 60.822 55.000 0.00 0.00 0.00 3.13
668 679 1.028905 CACAAGAACGGCCTGGAAAA 58.971 50.000 0.00 0.00 0.00 2.29
669 680 1.029681 ACAAGAACGGCCTGGAAAAC 58.970 50.000 0.00 0.00 0.00 2.43
670 681 0.313987 CAAGAACGGCCTGGAAAACC 59.686 55.000 0.00 0.00 0.00 3.27
671 682 0.106419 AAGAACGGCCTGGAAAACCA 60.106 50.000 0.00 0.00 0.00 3.67
672 683 0.112412 AGAACGGCCTGGAAAACCAT 59.888 50.000 0.00 0.00 0.00 3.55
673 684 0.243636 GAACGGCCTGGAAAACCATG 59.756 55.000 0.00 0.00 0.00 3.66
674 685 1.815817 AACGGCCTGGAAAACCATGC 61.816 55.000 0.00 7.74 0.00 4.06
675 686 1.978617 CGGCCTGGAAAACCATGCT 60.979 57.895 13.99 0.00 33.12 3.79
676 687 1.893062 GGCCTGGAAAACCATGCTC 59.107 57.895 13.99 3.87 33.12 4.26
677 688 1.508088 GCCTGGAAAACCATGCTCG 59.492 57.895 0.00 0.00 0.00 5.03
678 689 1.244019 GCCTGGAAAACCATGCTCGT 61.244 55.000 0.00 0.00 0.00 4.18
679 690 0.523072 CCTGGAAAACCATGCTCGTG 59.477 55.000 0.00 0.00 0.00 4.35
680 691 0.109597 CTGGAAAACCATGCTCGTGC 60.110 55.000 1.71 1.71 40.20 5.34
681 692 1.212751 GGAAAACCATGCTCGTGCC 59.787 57.895 7.05 0.00 38.71 5.01
682 693 1.523154 GGAAAACCATGCTCGTGCCA 61.523 55.000 7.05 0.00 38.71 4.92
683 694 0.527565 GAAAACCATGCTCGTGCCAT 59.472 50.000 7.05 0.00 38.71 4.40
684 695 0.968405 AAAACCATGCTCGTGCCATT 59.032 45.000 7.05 0.00 38.71 3.16
685 696 0.968405 AAACCATGCTCGTGCCATTT 59.032 45.000 7.05 0.00 38.71 2.32
686 697 1.832883 AACCATGCTCGTGCCATTTA 58.167 45.000 7.05 0.00 38.71 1.40
687 698 1.382522 ACCATGCTCGTGCCATTTAG 58.617 50.000 7.05 0.00 38.71 1.85
688 699 1.340017 ACCATGCTCGTGCCATTTAGT 60.340 47.619 7.05 0.00 38.71 2.24
689 700 2.093181 ACCATGCTCGTGCCATTTAGTA 60.093 45.455 7.05 0.00 38.71 1.82
690 701 2.942376 CCATGCTCGTGCCATTTAGTAA 59.058 45.455 7.05 0.00 38.71 2.24
691 702 3.376859 CCATGCTCGTGCCATTTAGTAAA 59.623 43.478 7.05 0.00 38.71 2.01
692 703 4.036734 CCATGCTCGTGCCATTTAGTAAAT 59.963 41.667 7.05 2.10 38.71 1.40
693 704 5.450412 CCATGCTCGTGCCATTTAGTAAATT 60.450 40.000 7.05 0.00 38.71 1.82
694 705 6.238621 CCATGCTCGTGCCATTTAGTAAATTA 60.239 38.462 7.05 0.00 38.71 1.40
695 706 6.935741 TGCTCGTGCCATTTAGTAAATTAT 57.064 33.333 7.05 0.00 38.71 1.28
696 707 6.954944 TGCTCGTGCCATTTAGTAAATTATC 58.045 36.000 7.05 0.00 38.71 1.75
697 708 6.540551 TGCTCGTGCCATTTAGTAAATTATCA 59.459 34.615 7.05 2.08 38.71 2.15
698 709 7.228507 TGCTCGTGCCATTTAGTAAATTATCAT 59.771 33.333 7.05 0.00 38.71 2.45
699 710 7.535258 GCTCGTGCCATTTAGTAAATTATCATG 59.465 37.037 5.34 9.05 0.00 3.07
700 711 7.359595 TCGTGCCATTTAGTAAATTATCATGC 58.640 34.615 5.34 3.57 0.00 4.06
701 712 6.582295 CGTGCCATTTAGTAAATTATCATGCC 59.418 38.462 5.34 0.00 0.00 4.40
702 713 7.522073 CGTGCCATTTAGTAAATTATCATGCCT 60.522 37.037 5.34 0.00 0.00 4.75
703 714 8.143835 GTGCCATTTAGTAAATTATCATGCCTT 58.856 33.333 5.34 0.00 0.00 4.35
704 715 8.703743 TGCCATTTAGTAAATTATCATGCCTTT 58.296 29.630 5.34 0.00 0.00 3.11
705 716 9.546428 GCCATTTAGTAAATTATCATGCCTTTT 57.454 29.630 5.34 0.00 0.00 2.27
728 739 7.786178 TTACAAGGAATGGACAGATATTTCG 57.214 36.000 0.00 0.00 0.00 3.46
729 740 5.989477 ACAAGGAATGGACAGATATTTCGA 58.011 37.500 0.00 0.00 0.00 3.71
730 741 6.595682 ACAAGGAATGGACAGATATTTCGAT 58.404 36.000 0.00 0.00 0.00 3.59
731 742 6.484643 ACAAGGAATGGACAGATATTTCGATG 59.515 38.462 0.00 0.00 0.00 3.84
732 743 6.425210 AGGAATGGACAGATATTTCGATGA 57.575 37.500 0.00 0.00 0.00 2.92
733 744 6.830912 AGGAATGGACAGATATTTCGATGAA 58.169 36.000 0.00 0.00 0.00 2.57
734 745 7.282585 AGGAATGGACAGATATTTCGATGAAA 58.717 34.615 0.00 0.00 35.94 2.69
735 746 7.941238 AGGAATGGACAGATATTTCGATGAAAT 59.059 33.333 9.47 9.47 43.49 2.17
736 747 8.019669 GGAATGGACAGATATTTCGATGAAATG 58.980 37.037 13.53 2.86 41.55 2.32
737 748 8.455903 AATGGACAGATATTTCGATGAAATGT 57.544 30.769 13.53 7.91 41.55 2.71
738 749 7.250445 TGGACAGATATTTCGATGAAATGTG 57.750 36.000 13.53 10.58 41.55 3.21
739 750 6.823182 TGGACAGATATTTCGATGAAATGTGT 59.177 34.615 13.53 12.97 41.55 3.72
740 751 7.128331 GGACAGATATTTCGATGAAATGTGTG 58.872 38.462 18.11 18.11 43.99 3.82
741 752 7.019774 ACAGATATTTCGATGAAATGTGTGG 57.980 36.000 21.37 10.19 43.31 4.17
742 753 5.911280 CAGATATTTCGATGAAATGTGTGGC 59.089 40.000 13.53 0.00 41.55 5.01
743 754 5.589855 AGATATTTCGATGAAATGTGTGGCA 59.410 36.000 13.53 0.00 41.55 4.92
744 755 4.724074 ATTTCGATGAAATGTGTGGCAT 57.276 36.364 4.10 0.00 40.24 4.40
745 756 5.833406 ATTTCGATGAAATGTGTGGCATA 57.167 34.783 4.10 0.00 40.24 3.14
746 757 5.635417 TTTCGATGAAATGTGTGGCATAA 57.365 34.783 0.00 0.00 36.67 1.90
747 758 5.833406 TTCGATGAAATGTGTGGCATAAT 57.167 34.783 0.00 0.00 36.67 1.28
748 759 6.934048 TTCGATGAAATGTGTGGCATAATA 57.066 33.333 0.00 0.00 36.67 0.98
749 760 6.544038 TCGATGAAATGTGTGGCATAATAG 57.456 37.500 0.00 0.00 36.67 1.73
750 761 6.054941 TCGATGAAATGTGTGGCATAATAGT 58.945 36.000 0.00 0.00 36.67 2.12
751 762 6.202762 TCGATGAAATGTGTGGCATAATAGTC 59.797 38.462 0.00 0.00 36.67 2.59
752 763 6.018016 CGATGAAATGTGTGGCATAATAGTCA 60.018 38.462 0.00 0.00 36.67 3.41
753 764 7.467131 CGATGAAATGTGTGGCATAATAGTCAA 60.467 37.037 0.00 0.00 36.67 3.18
754 765 6.851609 TGAAATGTGTGGCATAATAGTCAAC 58.148 36.000 0.00 0.00 36.67 3.18
755 766 5.835113 AATGTGTGGCATAATAGTCAACC 57.165 39.130 0.00 0.00 36.67 3.77
756 767 4.293662 TGTGTGGCATAATAGTCAACCA 57.706 40.909 0.00 0.00 0.00 3.67
757 768 4.006989 TGTGTGGCATAATAGTCAACCAC 58.993 43.478 3.06 3.06 46.15 4.16
760 771 5.637006 GTGGCATAATAGTCAACCACAAA 57.363 39.130 5.15 0.00 45.45 2.83
761 772 6.207691 GTGGCATAATAGTCAACCACAAAT 57.792 37.500 5.15 0.00 45.45 2.32
762 773 6.035843 GTGGCATAATAGTCAACCACAAATG 58.964 40.000 5.15 0.00 45.45 2.32
763 774 5.714333 TGGCATAATAGTCAACCACAAATGT 59.286 36.000 0.00 0.00 0.00 2.71
764 775 6.210385 TGGCATAATAGTCAACCACAAATGTT 59.790 34.615 0.00 0.00 0.00 2.71
765 776 7.096551 GGCATAATAGTCAACCACAAATGTTT 58.903 34.615 0.00 0.00 0.00 2.83
766 777 7.063308 GGCATAATAGTCAACCACAAATGTTTG 59.937 37.037 4.04 4.04 43.62 2.93
781 792 6.672147 CAAATGTTTGTTTGTTGGGTTTTCA 58.328 32.000 0.00 0.00 35.02 2.69
782 793 6.884280 AATGTTTGTTTGTTGGGTTTTCAA 57.116 29.167 0.00 0.00 0.00 2.69
783 794 5.674933 TGTTTGTTTGTTGGGTTTTCAAC 57.325 34.783 0.00 0.00 45.13 3.18
784 795 5.368989 TGTTTGTTTGTTGGGTTTTCAACT 58.631 33.333 8.80 0.00 45.15 3.16
785 796 6.522054 TGTTTGTTTGTTGGGTTTTCAACTA 58.478 32.000 8.80 0.00 45.15 2.24
786 797 7.162082 TGTTTGTTTGTTGGGTTTTCAACTAT 58.838 30.769 8.80 0.00 45.15 2.12
787 798 8.311836 TGTTTGTTTGTTGGGTTTTCAACTATA 58.688 29.630 8.80 0.00 45.15 1.31
788 799 8.813282 GTTTGTTTGTTGGGTTTTCAACTATAG 58.187 33.333 0.00 0.00 45.15 1.31
789 800 7.883391 TGTTTGTTGGGTTTTCAACTATAGA 57.117 32.000 6.78 0.00 45.15 1.98
790 801 8.294954 TGTTTGTTGGGTTTTCAACTATAGAA 57.705 30.769 6.78 0.00 45.15 2.10
791 802 8.750298 TGTTTGTTGGGTTTTCAACTATAGAAA 58.250 29.630 6.78 0.00 45.15 2.52
792 803 9.589111 GTTTGTTGGGTTTTCAACTATAGAAAA 57.411 29.630 6.78 0.56 45.15 2.29
795 806 9.757227 TGTTGGGTTTTCAACTATAGAAAAATG 57.243 29.630 6.78 0.00 43.98 2.32
796 807 9.974980 GTTGGGTTTTCAACTATAGAAAAATGA 57.025 29.630 6.78 0.41 43.98 2.57
829 840 2.652941 AAAACATAACGCCTGCCATG 57.347 45.000 0.00 0.00 0.00 3.66
830 841 0.817013 AAACATAACGCCTGCCATGG 59.183 50.000 7.63 7.63 0.00 3.66
831 842 0.323360 AACATAACGCCTGCCATGGT 60.323 50.000 14.67 0.00 0.00 3.55
832 843 1.031571 ACATAACGCCTGCCATGGTG 61.032 55.000 14.67 6.76 42.85 4.17
833 844 2.120909 ATAACGCCTGCCATGGTGC 61.121 57.895 14.67 12.84 41.02 5.01
845 856 3.827505 ATGGTGCCATGGTATGACC 57.172 52.632 14.67 14.38 39.22 4.02
846 857 1.225373 ATGGTGCCATGGTATGACCT 58.775 50.000 14.67 2.84 39.58 3.85
847 858 0.546122 TGGTGCCATGGTATGACCTC 59.454 55.000 14.67 0.00 39.58 3.85
848 859 0.546122 GGTGCCATGGTATGACCTCA 59.454 55.000 14.67 0.00 39.58 3.86
849 860 1.668419 GTGCCATGGTATGACCTCAC 58.332 55.000 14.67 6.36 39.58 3.51
850 861 0.546122 TGCCATGGTATGACCTCACC 59.454 55.000 14.67 0.00 39.58 4.02
856 867 1.837439 TGGTATGACCTCACCATGTCC 59.163 52.381 0.00 0.00 39.91 4.02
857 868 2.119495 GGTATGACCTCACCATGTCCT 58.881 52.381 0.00 0.00 34.73 3.85
858 869 2.158900 GGTATGACCTCACCATGTCCTG 60.159 54.545 0.00 0.00 34.73 3.86
859 870 5.321023 GGTATGACCTCACCATGTCCTGG 62.321 56.522 0.00 0.00 42.49 4.45
872 883 6.588719 CCATGTCCTGGTAAAAATTTGAGA 57.411 37.500 0.00 0.00 40.49 3.27
873 884 6.991938 CCATGTCCTGGTAAAAATTTGAGAA 58.008 36.000 0.00 0.00 40.49 2.87
874 885 7.092716 CCATGTCCTGGTAAAAATTTGAGAAG 58.907 38.462 0.00 0.00 40.49 2.85
875 886 6.648879 TGTCCTGGTAAAAATTTGAGAAGG 57.351 37.500 0.00 0.00 0.00 3.46
876 887 6.133356 TGTCCTGGTAAAAATTTGAGAAGGT 58.867 36.000 0.00 0.00 0.00 3.50
877 888 6.609616 TGTCCTGGTAAAAATTTGAGAAGGTT 59.390 34.615 0.00 0.00 0.00 3.50
878 889 7.125053 TGTCCTGGTAAAAATTTGAGAAGGTTT 59.875 33.333 0.00 0.00 0.00 3.27
879 890 7.438160 GTCCTGGTAAAAATTTGAGAAGGTTTG 59.562 37.037 0.00 0.00 0.00 2.93
880 891 6.705825 CCTGGTAAAAATTTGAGAAGGTTTGG 59.294 38.462 0.00 0.00 0.00 3.28
881 892 6.052360 TGGTAAAAATTTGAGAAGGTTTGGC 58.948 36.000 0.00 0.00 0.00 4.52
882 893 6.126911 TGGTAAAAATTTGAGAAGGTTTGGCT 60.127 34.615 0.00 0.00 0.00 4.75
883 894 6.765989 GGTAAAAATTTGAGAAGGTTTGGCTT 59.234 34.615 0.00 0.00 0.00 4.35
884 895 7.929245 GGTAAAAATTTGAGAAGGTTTGGCTTA 59.071 33.333 0.00 0.00 0.00 3.09
885 896 9.489084 GTAAAAATTTGAGAAGGTTTGGCTTAT 57.511 29.630 0.00 0.00 0.00 1.73
886 897 7.967890 AAAATTTGAGAAGGTTTGGCTTATG 57.032 32.000 0.00 0.00 0.00 1.90
887 898 6.670695 AATTTGAGAAGGTTTGGCTTATGT 57.329 33.333 0.00 0.00 0.00 2.29
888 899 5.705609 TTTGAGAAGGTTTGGCTTATGTC 57.294 39.130 0.00 0.00 0.00 3.06
889 900 3.334691 TGAGAAGGTTTGGCTTATGTCG 58.665 45.455 0.00 0.00 0.00 4.35
890 901 3.244422 TGAGAAGGTTTGGCTTATGTCGT 60.244 43.478 0.00 0.00 0.00 4.34
891 902 3.335579 AGAAGGTTTGGCTTATGTCGTC 58.664 45.455 0.00 0.00 0.00 4.20
892 903 2.851263 AGGTTTGGCTTATGTCGTCA 57.149 45.000 0.00 0.00 0.00 4.35
893 904 3.350219 AGGTTTGGCTTATGTCGTCAT 57.650 42.857 0.00 0.00 38.00 3.06
894 905 3.009723 AGGTTTGGCTTATGTCGTCATG 58.990 45.455 5.36 0.00 35.70 3.07
895 906 2.477863 GGTTTGGCTTATGTCGTCATGC 60.478 50.000 5.36 1.21 35.70 4.06
896 907 2.106477 TTGGCTTATGTCGTCATGCA 57.894 45.000 5.36 0.00 35.70 3.96
897 908 1.368641 TGGCTTATGTCGTCATGCAC 58.631 50.000 5.36 0.00 35.70 4.57
905 916 2.741985 CGTCATGCACGCCCTTCA 60.742 61.111 0.00 0.00 42.87 3.02
906 917 2.108514 CGTCATGCACGCCCTTCAT 61.109 57.895 0.00 0.00 42.87 2.57
907 918 0.809636 CGTCATGCACGCCCTTCATA 60.810 55.000 0.00 0.00 42.87 2.15
908 919 1.378531 GTCATGCACGCCCTTCATAA 58.621 50.000 0.00 0.00 0.00 1.90
909 920 1.742831 GTCATGCACGCCCTTCATAAA 59.257 47.619 0.00 0.00 0.00 1.40
910 921 2.358898 GTCATGCACGCCCTTCATAAAT 59.641 45.455 0.00 0.00 0.00 1.40
911 922 2.618241 TCATGCACGCCCTTCATAAATC 59.382 45.455 0.00 0.00 0.00 2.17
912 923 1.013596 TGCACGCCCTTCATAAATCG 58.986 50.000 0.00 0.00 0.00 3.34
913 924 1.295792 GCACGCCCTTCATAAATCGA 58.704 50.000 0.00 0.00 0.00 3.59
914 925 1.668751 GCACGCCCTTCATAAATCGAA 59.331 47.619 0.00 0.00 0.00 3.71
915 926 2.538939 GCACGCCCTTCATAAATCGAAC 60.539 50.000 0.00 0.00 0.00 3.95
916 927 2.031683 CACGCCCTTCATAAATCGAACC 59.968 50.000 0.00 0.00 0.00 3.62
917 928 2.285083 CGCCCTTCATAAATCGAACCA 58.715 47.619 0.00 0.00 0.00 3.67
918 929 2.878406 CGCCCTTCATAAATCGAACCAT 59.122 45.455 0.00 0.00 0.00 3.55
919 930 3.058914 CGCCCTTCATAAATCGAACCATC 60.059 47.826 0.00 0.00 0.00 3.51
920 931 3.882888 GCCCTTCATAAATCGAACCATCA 59.117 43.478 0.00 0.00 0.00 3.07
921 932 4.261197 GCCCTTCATAAATCGAACCATCAC 60.261 45.833 0.00 0.00 0.00 3.06
922 933 4.275936 CCCTTCATAAATCGAACCATCACC 59.724 45.833 0.00 0.00 0.00 4.02
923 934 4.024893 CCTTCATAAATCGAACCATCACCG 60.025 45.833 0.00 0.00 0.00 4.94
924 935 4.394439 TCATAAATCGAACCATCACCGA 57.606 40.909 0.00 0.00 36.72 4.69
925 936 4.368315 TCATAAATCGAACCATCACCGAG 58.632 43.478 0.00 0.00 35.70 4.63
926 937 2.024176 AAATCGAACCATCACCGAGG 57.976 50.000 0.00 0.00 35.70 4.63
927 938 1.191535 AATCGAACCATCACCGAGGA 58.808 50.000 0.00 0.00 35.70 3.71
928 939 1.191535 ATCGAACCATCACCGAGGAA 58.808 50.000 0.00 0.00 35.70 3.36
929 940 0.530744 TCGAACCATCACCGAGGAAG 59.469 55.000 0.00 0.00 0.00 3.46
930 941 0.246635 CGAACCATCACCGAGGAAGT 59.753 55.000 0.00 0.00 0.00 3.01
931 942 1.337823 CGAACCATCACCGAGGAAGTT 60.338 52.381 0.00 0.00 0.00 2.66
932 943 2.347731 GAACCATCACCGAGGAAGTTC 58.652 52.381 0.00 0.00 31.38 3.01
933 944 0.613777 ACCATCACCGAGGAAGTTCC 59.386 55.000 14.54 14.54 36.58 3.62
934 945 0.613260 CCATCACCGAGGAAGTTCCA 59.387 55.000 23.87 2.07 39.61 3.53
935 946 1.210478 CCATCACCGAGGAAGTTCCAT 59.790 52.381 23.87 8.99 39.61 3.41
936 947 2.283298 CATCACCGAGGAAGTTCCATG 58.717 52.381 23.87 14.57 39.61 3.66
937 948 0.036388 TCACCGAGGAAGTTCCATGC 60.036 55.000 23.87 11.37 39.61 4.06
938 949 0.036010 CACCGAGGAAGTTCCATGCT 60.036 55.000 23.87 2.61 39.61 3.79
939 950 0.693049 ACCGAGGAAGTTCCATGCTT 59.307 50.000 23.87 2.19 39.61 3.91
940 951 1.073923 ACCGAGGAAGTTCCATGCTTT 59.926 47.619 23.87 1.39 39.61 3.51
941 952 1.740025 CCGAGGAAGTTCCATGCTTTC 59.260 52.381 23.87 10.22 39.61 2.62
942 953 1.394917 CGAGGAAGTTCCATGCTTTCG 59.605 52.381 23.87 17.73 39.61 3.46
943 954 2.699954 GAGGAAGTTCCATGCTTTCGA 58.300 47.619 23.87 0.00 39.61 3.71
944 955 2.675348 GAGGAAGTTCCATGCTTTCGAG 59.325 50.000 23.87 0.00 39.61 4.04
945 956 2.303022 AGGAAGTTCCATGCTTTCGAGA 59.697 45.455 23.87 0.00 39.61 4.04
946 957 2.675348 GGAAGTTCCATGCTTTCGAGAG 59.325 50.000 17.44 0.00 36.28 3.20
947 958 2.393271 AGTTCCATGCTTTCGAGAGG 57.607 50.000 4.98 0.00 0.00 3.69
957 968 5.353394 TGCTTTCGAGAGGGTAAATACAT 57.647 39.130 4.98 0.00 0.00 2.29
1082 1093 5.878116 GGTATGCCTTATATACCGCATTTGA 59.122 40.000 16.85 2.13 41.89 2.69
1093 1104 0.449388 CGCATTTGAGCAACCCTCTC 59.551 55.000 0.00 0.00 41.35 3.20
1094 1105 1.538047 GCATTTGAGCAACCCTCTCA 58.462 50.000 0.00 0.00 41.35 3.27
1095 1106 1.888512 GCATTTGAGCAACCCTCTCAA 59.111 47.619 1.72 1.72 45.62 3.02
1096 1107 2.352127 GCATTTGAGCAACCCTCTCAAC 60.352 50.000 5.08 0.00 46.56 3.18
1097 1108 2.727123 TTTGAGCAACCCTCTCAACA 57.273 45.000 5.08 0.00 46.56 3.33
1098 1109 2.727123 TTGAGCAACCCTCTCAACAA 57.273 45.000 1.72 0.00 43.34 2.83
1099 1110 2.957402 TGAGCAACCCTCTCAACAAT 57.043 45.000 0.00 0.00 41.35 2.71
1100 1111 3.228188 TGAGCAACCCTCTCAACAATT 57.772 42.857 0.00 0.00 41.35 2.32
1101 1112 4.365514 TGAGCAACCCTCTCAACAATTA 57.634 40.909 0.00 0.00 41.35 1.40
1102 1113 4.724399 TGAGCAACCCTCTCAACAATTAA 58.276 39.130 0.00 0.00 41.35 1.40
1103 1114 4.761739 TGAGCAACCCTCTCAACAATTAAG 59.238 41.667 0.00 0.00 41.35 1.85
1104 1115 4.985538 AGCAACCCTCTCAACAATTAAGA 58.014 39.130 0.00 0.00 0.00 2.10
1105 1116 5.006386 AGCAACCCTCTCAACAATTAAGAG 58.994 41.667 0.00 0.00 36.99 2.85
1106 1117 5.003804 GCAACCCTCTCAACAATTAAGAGA 58.996 41.667 0.31 5.95 39.09 3.10
1107 1118 5.649831 GCAACCCTCTCAACAATTAAGAGAT 59.350 40.000 0.31 0.00 39.09 2.75
1108 1119 6.183360 GCAACCCTCTCAACAATTAAGAGATC 60.183 42.308 0.31 0.00 39.09 2.75
1109 1120 5.995446 ACCCTCTCAACAATTAAGAGATCC 58.005 41.667 0.31 0.00 39.09 3.36
1110 1121 5.488919 ACCCTCTCAACAATTAAGAGATCCA 59.511 40.000 0.31 0.00 39.09 3.41
1111 1122 5.819901 CCCTCTCAACAATTAAGAGATCCAC 59.180 44.000 0.31 0.00 39.09 4.02
1112 1123 6.352565 CCCTCTCAACAATTAAGAGATCCACT 60.353 42.308 0.31 0.00 39.09 4.00
1113 1124 6.760770 CCTCTCAACAATTAAGAGATCCACTC 59.239 42.308 0.31 0.00 45.22 3.51
1123 1134 2.520979 GAGATCCACTCGAAGAACACG 58.479 52.381 0.00 0.00 35.84 4.49
1124 1135 1.202582 AGATCCACTCGAAGAACACGG 59.797 52.381 0.00 0.00 34.09 4.94
1125 1136 1.201647 GATCCACTCGAAGAACACGGA 59.798 52.381 0.00 0.00 34.09 4.69
1126 1137 0.596577 TCCACTCGAAGAACACGGAG 59.403 55.000 0.00 0.00 34.09 4.63
1127 1138 0.596577 CCACTCGAAGAACACGGAGA 59.403 55.000 0.00 0.00 34.09 3.71
1128 1139 1.666311 CCACTCGAAGAACACGGAGAC 60.666 57.143 0.00 0.00 34.09 3.36
1129 1140 1.267261 CACTCGAAGAACACGGAGACT 59.733 52.381 0.00 0.00 34.09 3.24
1130 1141 2.483106 CACTCGAAGAACACGGAGACTA 59.517 50.000 0.00 0.00 34.09 2.59
1131 1142 3.058432 CACTCGAAGAACACGGAGACTAA 60.058 47.826 0.00 0.00 34.09 2.24
1132 1143 3.757493 ACTCGAAGAACACGGAGACTAAT 59.243 43.478 0.00 0.00 34.09 1.73
1133 1144 4.217983 ACTCGAAGAACACGGAGACTAATT 59.782 41.667 0.00 0.00 34.09 1.40
1134 1145 5.130292 TCGAAGAACACGGAGACTAATTT 57.870 39.130 0.00 0.00 0.00 1.82
1135 1146 6.072286 ACTCGAAGAACACGGAGACTAATTTA 60.072 38.462 0.00 0.00 34.09 1.40
1136 1147 6.680810 TCGAAGAACACGGAGACTAATTTAA 58.319 36.000 0.00 0.00 0.00 1.52
1137 1148 6.805271 TCGAAGAACACGGAGACTAATTTAAG 59.195 38.462 0.00 0.00 0.00 1.85
1138 1149 6.585322 CGAAGAACACGGAGACTAATTTAAGT 59.415 38.462 0.00 0.00 0.00 2.24
1139 1150 7.752239 CGAAGAACACGGAGACTAATTTAAGTA 59.248 37.037 0.00 0.00 0.00 2.24
1140 1151 9.415544 GAAGAACACGGAGACTAATTTAAGTAA 57.584 33.333 0.00 0.00 0.00 2.24
1141 1152 8.983307 AGAACACGGAGACTAATTTAAGTAAG 57.017 34.615 0.00 0.00 0.00 2.34
1142 1153 8.800332 AGAACACGGAGACTAATTTAAGTAAGA 58.200 33.333 0.00 0.00 0.00 2.10
1330 1524 9.284594 GAAATAATTCAAATTCGAACAATCGGA 57.715 29.630 0.00 0.00 41.12 4.55
1356 1550 2.335316 AAAGGTGCACAAGAACGGTA 57.665 45.000 20.43 0.00 0.00 4.02
1695 2653 3.394274 TCCTTTGTCCTTTGTCCATGAGA 59.606 43.478 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 6.503616 TCGGAAAAATGTCAAATTTGAACG 57.496 33.333 22.07 14.92 39.21 3.95
213 215 5.361857 CCATTCCTTGTAAAAGGCATGAGAT 59.638 40.000 21.97 1.60 43.39 2.75
320 322 2.053627 CGTCATGTTTTCCAAGCAAGC 58.946 47.619 0.00 0.00 0.00 4.01
322 324 1.269517 GGCGTCATGTTTTCCAAGCAA 60.270 47.619 0.00 0.00 0.00 3.91
391 393 1.302383 TTTATGGAAGGCGTGCACGG 61.302 55.000 37.47 20.93 40.23 4.94
393 395 1.727857 CGTTTTATGGAAGGCGTGCAC 60.728 52.381 6.82 6.82 0.00 4.57
404 406 3.004171 TCGGTGATGGTTCGTTTTATGG 58.996 45.455 0.00 0.00 0.00 2.74
441 443 0.394352 CTTGGTGATTTCCCCCTCGG 60.394 60.000 0.00 0.00 0.00 4.63
628 639 2.639065 GACCCTTTCATGCACCGATTA 58.361 47.619 0.00 0.00 0.00 1.75
629 640 1.463674 GACCCTTTCATGCACCGATT 58.536 50.000 0.00 0.00 0.00 3.34
630 641 0.394352 GGACCCTTTCATGCACCGAT 60.394 55.000 0.00 0.00 0.00 4.18
631 642 1.002624 GGACCCTTTCATGCACCGA 60.003 57.895 0.00 0.00 0.00 4.69
632 643 1.303236 TGGACCCTTTCATGCACCG 60.303 57.895 0.00 0.00 0.00 4.94
633 644 0.539438 TGTGGACCCTTTCATGCACC 60.539 55.000 0.00 0.00 36.42 5.01
634 645 1.270550 CTTGTGGACCCTTTCATGCAC 59.729 52.381 0.00 0.00 37.65 4.57
635 646 1.144708 TCTTGTGGACCCTTTCATGCA 59.855 47.619 0.00 0.00 0.00 3.96
636 647 1.909700 TCTTGTGGACCCTTTCATGC 58.090 50.000 0.00 0.00 0.00 4.06
637 648 2.226437 CGTTCTTGTGGACCCTTTCATG 59.774 50.000 0.00 0.00 0.00 3.07
638 649 2.504367 CGTTCTTGTGGACCCTTTCAT 58.496 47.619 0.00 0.00 0.00 2.57
639 650 1.476110 CCGTTCTTGTGGACCCTTTCA 60.476 52.381 0.00 0.00 0.00 2.69
640 651 1.235724 CCGTTCTTGTGGACCCTTTC 58.764 55.000 0.00 0.00 0.00 2.62
641 652 0.822121 GCCGTTCTTGTGGACCCTTT 60.822 55.000 0.00 0.00 0.00 3.11
642 653 1.228154 GCCGTTCTTGTGGACCCTT 60.228 57.895 0.00 0.00 0.00 3.95
643 654 2.430367 GCCGTTCTTGTGGACCCT 59.570 61.111 0.00 0.00 0.00 4.34
644 655 2.671963 GGCCGTTCTTGTGGACCC 60.672 66.667 0.00 0.00 0.00 4.46
645 656 1.966451 CAGGCCGTTCTTGTGGACC 60.966 63.158 0.00 0.00 31.71 4.46
646 657 1.966451 CCAGGCCGTTCTTGTGGAC 60.966 63.158 0.00 0.00 0.00 4.02
647 658 1.701031 TTCCAGGCCGTTCTTGTGGA 61.701 55.000 3.58 3.58 35.45 4.02
648 659 0.821711 TTTCCAGGCCGTTCTTGTGG 60.822 55.000 0.00 0.00 0.00 4.17
649 660 1.028905 TTTTCCAGGCCGTTCTTGTG 58.971 50.000 0.00 0.00 0.00 3.33
650 661 1.029681 GTTTTCCAGGCCGTTCTTGT 58.970 50.000 0.00 0.00 0.00 3.16
651 662 0.313987 GGTTTTCCAGGCCGTTCTTG 59.686 55.000 0.00 0.00 40.31 3.02
652 663 0.106419 TGGTTTTCCAGGCCGTTCTT 60.106 50.000 0.00 0.00 46.22 2.52
653 664 1.534697 TGGTTTTCCAGGCCGTTCT 59.465 52.632 0.00 0.00 46.22 3.01
654 665 4.167597 TGGTTTTCCAGGCCGTTC 57.832 55.556 0.00 0.00 46.22 3.95
661 672 3.403239 GGCACGAGCATGGTTTTCCAG 62.403 57.143 7.26 0.00 45.45 3.86
662 673 1.523154 GGCACGAGCATGGTTTTCCA 61.523 55.000 7.26 0.00 45.97 3.53
663 674 1.212751 GGCACGAGCATGGTTTTCC 59.787 57.895 7.26 0.00 44.61 3.13
664 675 0.527565 ATGGCACGAGCATGGTTTTC 59.472 50.000 7.26 0.00 44.61 2.29
665 676 0.968405 AATGGCACGAGCATGGTTTT 59.032 45.000 7.26 0.00 44.61 2.43
666 677 0.968405 AAATGGCACGAGCATGGTTT 59.032 45.000 7.26 0.00 44.61 3.27
667 678 1.745087 CTAAATGGCACGAGCATGGTT 59.255 47.619 7.26 0.00 44.61 3.67
668 679 1.340017 ACTAAATGGCACGAGCATGGT 60.340 47.619 7.26 0.00 44.61 3.55
669 680 1.382522 ACTAAATGGCACGAGCATGG 58.617 50.000 7.26 0.00 44.61 3.66
670 681 4.614555 TTTACTAAATGGCACGAGCATG 57.385 40.909 7.26 0.00 44.61 4.06
671 682 5.835113 AATTTACTAAATGGCACGAGCAT 57.165 34.783 7.26 0.00 44.61 3.79
672 683 6.540551 TGATAATTTACTAAATGGCACGAGCA 59.459 34.615 7.26 0.00 44.61 4.26
673 684 6.954944 TGATAATTTACTAAATGGCACGAGC 58.045 36.000 0.00 0.00 41.10 5.03
674 685 7.535258 GCATGATAATTTACTAAATGGCACGAG 59.465 37.037 0.00 0.00 0.00 4.18
675 686 7.359595 GCATGATAATTTACTAAATGGCACGA 58.640 34.615 0.00 0.00 0.00 4.35
676 687 6.582295 GGCATGATAATTTACTAAATGGCACG 59.418 38.462 0.00 0.00 38.55 5.34
677 688 7.661040 AGGCATGATAATTTACTAAATGGCAC 58.339 34.615 0.00 0.00 40.44 5.01
678 689 7.838079 AGGCATGATAATTTACTAAATGGCA 57.162 32.000 0.00 0.00 40.44 4.92
679 690 9.546428 AAAAGGCATGATAATTTACTAAATGGC 57.454 29.630 0.00 0.00 38.86 4.40
686 697 9.474313 TCCTTGTAAAAGGCATGATAATTTACT 57.526 29.630 6.84 0.00 39.80 2.24
689 700 9.603921 CATTCCTTGTAAAAGGCATGATAATTT 57.396 29.630 16.94 0.00 43.39 1.82
690 701 8.206189 CCATTCCTTGTAAAAGGCATGATAATT 58.794 33.333 21.97 0.00 43.39 1.40
691 702 7.564660 TCCATTCCTTGTAAAAGGCATGATAAT 59.435 33.333 21.97 6.98 43.39 1.28
692 703 6.894654 TCCATTCCTTGTAAAAGGCATGATAA 59.105 34.615 21.97 5.02 43.39 1.75
693 704 6.321181 GTCCATTCCTTGTAAAAGGCATGATA 59.679 38.462 21.97 9.67 43.39 2.15
694 705 5.127682 GTCCATTCCTTGTAAAAGGCATGAT 59.872 40.000 21.97 5.22 43.39 2.45
695 706 4.462483 GTCCATTCCTTGTAAAAGGCATGA 59.538 41.667 21.97 8.53 43.39 3.07
696 707 4.220382 TGTCCATTCCTTGTAAAAGGCATG 59.780 41.667 15.39 15.39 41.36 4.06
697 708 4.415596 TGTCCATTCCTTGTAAAAGGCAT 58.584 39.130 6.84 0.00 39.80 4.40
698 709 3.826157 CTGTCCATTCCTTGTAAAAGGCA 59.174 43.478 6.84 0.00 39.80 4.75
699 710 4.079253 TCTGTCCATTCCTTGTAAAAGGC 58.921 43.478 6.84 0.00 39.80 4.35
700 711 8.525290 AATATCTGTCCATTCCTTGTAAAAGG 57.475 34.615 5.17 5.17 41.35 3.11
702 713 8.673711 CGAAATATCTGTCCATTCCTTGTAAAA 58.326 33.333 0.00 0.00 0.00 1.52
703 714 8.044309 TCGAAATATCTGTCCATTCCTTGTAAA 58.956 33.333 0.00 0.00 0.00 2.01
704 715 7.561251 TCGAAATATCTGTCCATTCCTTGTAA 58.439 34.615 0.00 0.00 0.00 2.41
705 716 7.119709 TCGAAATATCTGTCCATTCCTTGTA 57.880 36.000 0.00 0.00 0.00 2.41
706 717 5.989477 TCGAAATATCTGTCCATTCCTTGT 58.011 37.500 0.00 0.00 0.00 3.16
707 718 6.707608 TCATCGAAATATCTGTCCATTCCTTG 59.292 38.462 0.00 0.00 0.00 3.61
708 719 6.830912 TCATCGAAATATCTGTCCATTCCTT 58.169 36.000 0.00 0.00 0.00 3.36
709 720 6.425210 TCATCGAAATATCTGTCCATTCCT 57.575 37.500 0.00 0.00 0.00 3.36
710 721 7.496529 TTTCATCGAAATATCTGTCCATTCC 57.503 36.000 0.00 0.00 0.00 3.01
711 722 8.562892 ACATTTCATCGAAATATCTGTCCATTC 58.437 33.333 1.83 0.00 39.82 2.67
712 723 8.347771 CACATTTCATCGAAATATCTGTCCATT 58.652 33.333 1.83 0.00 39.82 3.16
713 724 7.500227 ACACATTTCATCGAAATATCTGTCCAT 59.500 33.333 1.83 0.00 39.82 3.41
714 725 6.823182 ACACATTTCATCGAAATATCTGTCCA 59.177 34.615 1.83 0.00 39.82 4.02
715 726 7.128331 CACACATTTCATCGAAATATCTGTCC 58.872 38.462 1.83 0.00 39.82 4.02
716 727 7.128331 CCACACATTTCATCGAAATATCTGTC 58.872 38.462 1.83 0.00 39.82 3.51
717 728 6.458751 GCCACACATTTCATCGAAATATCTGT 60.459 38.462 1.83 2.45 39.82 3.41
718 729 5.911280 GCCACACATTTCATCGAAATATCTG 59.089 40.000 1.83 1.94 39.82 2.90
719 730 5.589855 TGCCACACATTTCATCGAAATATCT 59.410 36.000 1.83 0.00 39.82 1.98
720 731 5.820131 TGCCACACATTTCATCGAAATATC 58.180 37.500 1.83 0.00 39.82 1.63
721 732 5.833406 TGCCACACATTTCATCGAAATAT 57.167 34.783 1.83 0.00 39.82 1.28
722 733 5.833406 ATGCCACACATTTCATCGAAATA 57.167 34.783 1.83 0.00 39.82 1.40
723 734 4.724074 ATGCCACACATTTCATCGAAAT 57.276 36.364 0.00 0.00 42.14 2.17
724 735 5.635417 TTATGCCACACATTTCATCGAAA 57.365 34.783 0.00 0.00 40.38 3.46
725 736 5.833406 ATTATGCCACACATTTCATCGAA 57.167 34.783 0.00 0.00 40.38 3.71
726 737 6.054941 ACTATTATGCCACACATTTCATCGA 58.945 36.000 0.00 0.00 40.38 3.59
727 738 6.018016 TGACTATTATGCCACACATTTCATCG 60.018 38.462 0.00 0.00 40.38 3.84
728 739 7.263100 TGACTATTATGCCACACATTTCATC 57.737 36.000 0.00 0.00 40.38 2.92
729 740 7.416664 GGTTGACTATTATGCCACACATTTCAT 60.417 37.037 0.00 0.00 40.38 2.57
730 741 6.127758 GGTTGACTATTATGCCACACATTTCA 60.128 38.462 0.00 0.00 40.38 2.69
731 742 6.127758 TGGTTGACTATTATGCCACACATTTC 60.128 38.462 0.00 0.00 40.38 2.17
732 743 5.714333 TGGTTGACTATTATGCCACACATTT 59.286 36.000 0.00 0.00 40.38 2.32
733 744 5.125417 GTGGTTGACTATTATGCCACACATT 59.875 40.000 6.64 0.00 44.00 2.71
734 745 4.640201 GTGGTTGACTATTATGCCACACAT 59.360 41.667 6.64 0.00 44.00 3.21
735 746 4.006989 GTGGTTGACTATTATGCCACACA 58.993 43.478 6.64 0.00 44.00 3.72
736 747 4.616181 GTGGTTGACTATTATGCCACAC 57.384 45.455 6.64 0.00 44.00 3.82
738 749 5.637006 TTTGTGGTTGACTATTATGCCAC 57.363 39.130 0.00 0.00 44.60 5.01
739 750 5.714333 ACATTTGTGGTTGACTATTATGCCA 59.286 36.000 0.00 0.00 0.00 4.92
740 751 6.207691 ACATTTGTGGTTGACTATTATGCC 57.792 37.500 0.00 0.00 0.00 4.40
741 752 7.952339 CAAACATTTGTGGTTGACTATTATGC 58.048 34.615 0.00 0.00 33.59 3.14
757 768 6.672147 TGAAAACCCAACAAACAAACATTTG 58.328 32.000 2.77 2.77 43.81 2.32
758 769 6.884280 TGAAAACCCAACAAACAAACATTT 57.116 29.167 0.00 0.00 0.00 2.32
759 770 6.673106 GTTGAAAACCCAACAAACAAACATT 58.327 32.000 0.00 0.00 44.22 2.71
760 771 6.247727 GTTGAAAACCCAACAAACAAACAT 57.752 33.333 0.00 0.00 44.22 2.71
761 772 5.674933 GTTGAAAACCCAACAAACAAACA 57.325 34.783 0.00 0.00 44.22 2.83
809 820 2.353605 CCATGGCAGGCGTTATGTTTTT 60.354 45.455 0.00 0.00 0.00 1.94
810 821 1.204467 CCATGGCAGGCGTTATGTTTT 59.796 47.619 0.00 0.00 0.00 2.43
811 822 0.817013 CCATGGCAGGCGTTATGTTT 59.183 50.000 0.00 0.00 0.00 2.83
812 823 0.323360 ACCATGGCAGGCGTTATGTT 60.323 50.000 13.04 0.00 0.00 2.71
813 824 1.031571 CACCATGGCAGGCGTTATGT 61.032 55.000 13.04 0.00 0.00 2.29
814 825 1.729276 CACCATGGCAGGCGTTATG 59.271 57.895 13.04 0.00 0.00 1.90
815 826 2.120909 GCACCATGGCAGGCGTTAT 61.121 57.895 13.04 0.00 0.00 1.89
816 827 2.749839 GCACCATGGCAGGCGTTA 60.750 61.111 13.04 0.00 0.00 3.18
827 838 1.143684 GAGGTCATACCATGGCACCAT 59.856 52.381 13.04 0.00 41.95 3.55
828 839 0.546122 GAGGTCATACCATGGCACCA 59.454 55.000 13.04 0.00 41.95 4.17
829 840 0.546122 TGAGGTCATACCATGGCACC 59.454 55.000 13.04 12.88 41.95 5.01
830 841 1.668419 GTGAGGTCATACCATGGCAC 58.332 55.000 13.04 5.34 41.95 5.01
831 842 0.546122 GGTGAGGTCATACCATGGCA 59.454 55.000 13.04 0.00 41.95 4.92
832 843 0.546122 TGGTGAGGTCATACCATGGC 59.454 55.000 13.04 0.00 41.80 4.40
837 848 2.119495 AGGACATGGTGAGGTCATACC 58.881 52.381 0.00 0.00 34.43 2.73
838 849 2.158900 CCAGGACATGGTGAGGTCATAC 60.159 54.545 0.00 0.00 44.91 2.39
839 850 2.118679 CCAGGACATGGTGAGGTCATA 58.881 52.381 0.00 0.00 44.91 2.15
840 851 0.914644 CCAGGACATGGTGAGGTCAT 59.085 55.000 0.00 0.00 44.91 3.06
841 852 2.376063 CCAGGACATGGTGAGGTCA 58.624 57.895 0.00 0.00 44.91 4.02
850 861 7.092716 CCTTCTCAAATTTTTACCAGGACATG 58.907 38.462 0.00 0.00 0.00 3.21
851 862 6.782494 ACCTTCTCAAATTTTTACCAGGACAT 59.218 34.615 0.00 0.00 0.00 3.06
852 863 6.133356 ACCTTCTCAAATTTTTACCAGGACA 58.867 36.000 0.00 0.00 0.00 4.02
853 864 6.650427 ACCTTCTCAAATTTTTACCAGGAC 57.350 37.500 0.00 0.00 0.00 3.85
854 865 7.418483 CCAAACCTTCTCAAATTTTTACCAGGA 60.418 37.037 0.00 0.00 0.00 3.86
855 866 6.705825 CCAAACCTTCTCAAATTTTTACCAGG 59.294 38.462 0.00 0.00 0.00 4.45
856 867 6.202762 GCCAAACCTTCTCAAATTTTTACCAG 59.797 38.462 0.00 0.00 0.00 4.00
857 868 6.052360 GCCAAACCTTCTCAAATTTTTACCA 58.948 36.000 0.00 0.00 0.00 3.25
858 869 6.288294 AGCCAAACCTTCTCAAATTTTTACC 58.712 36.000 0.00 0.00 0.00 2.85
859 870 7.786178 AAGCCAAACCTTCTCAAATTTTTAC 57.214 32.000 0.00 0.00 0.00 2.01
860 871 9.487790 CATAAGCCAAACCTTCTCAAATTTTTA 57.512 29.630 0.00 0.00 0.00 1.52
861 872 7.992608 ACATAAGCCAAACCTTCTCAAATTTTT 59.007 29.630 0.00 0.00 0.00 1.94
862 873 7.508687 ACATAAGCCAAACCTTCTCAAATTTT 58.491 30.769 0.00 0.00 0.00 1.82
863 874 7.066307 ACATAAGCCAAACCTTCTCAAATTT 57.934 32.000 0.00 0.00 0.00 1.82
864 875 6.570378 CGACATAAGCCAAACCTTCTCAAATT 60.570 38.462 0.00 0.00 0.00 1.82
865 876 5.106157 CGACATAAGCCAAACCTTCTCAAAT 60.106 40.000 0.00 0.00 0.00 2.32
866 877 4.215399 CGACATAAGCCAAACCTTCTCAAA 59.785 41.667 0.00 0.00 0.00 2.69
867 878 3.751175 CGACATAAGCCAAACCTTCTCAA 59.249 43.478 0.00 0.00 0.00 3.02
868 879 3.244422 ACGACATAAGCCAAACCTTCTCA 60.244 43.478 0.00 0.00 0.00 3.27
869 880 3.335579 ACGACATAAGCCAAACCTTCTC 58.664 45.455 0.00 0.00 0.00 2.87
870 881 3.244422 TGACGACATAAGCCAAACCTTCT 60.244 43.478 0.00 0.00 0.00 2.85
871 882 3.071479 TGACGACATAAGCCAAACCTTC 58.929 45.455 0.00 0.00 0.00 3.46
872 883 3.134574 TGACGACATAAGCCAAACCTT 57.865 42.857 0.00 0.00 0.00 3.50
873 884 2.851263 TGACGACATAAGCCAAACCT 57.149 45.000 0.00 0.00 0.00 3.50
874 885 2.477863 GCATGACGACATAAGCCAAACC 60.478 50.000 0.00 0.00 35.09 3.27
875 886 2.161410 TGCATGACGACATAAGCCAAAC 59.839 45.455 0.00 0.00 35.09 2.93
876 887 2.161410 GTGCATGACGACATAAGCCAAA 59.839 45.455 0.00 0.00 35.09 3.28
877 888 1.737236 GTGCATGACGACATAAGCCAA 59.263 47.619 0.00 0.00 35.09 4.52
878 889 1.368641 GTGCATGACGACATAAGCCA 58.631 50.000 0.00 0.00 35.09 4.75
889 900 1.378531 TTATGAAGGGCGTGCATGAC 58.621 50.000 10.93 6.68 0.00 3.06
890 901 2.121291 TTTATGAAGGGCGTGCATGA 57.879 45.000 10.93 0.00 0.00 3.07
891 902 2.602933 CGATTTATGAAGGGCGTGCATG 60.603 50.000 10.93 0.09 0.00 4.06
892 903 1.603802 CGATTTATGAAGGGCGTGCAT 59.396 47.619 5.88 5.88 0.00 3.96
893 904 1.013596 CGATTTATGAAGGGCGTGCA 58.986 50.000 0.00 0.00 0.00 4.57
894 905 1.295792 TCGATTTATGAAGGGCGTGC 58.704 50.000 0.00 0.00 0.00 5.34
895 906 2.031683 GGTTCGATTTATGAAGGGCGTG 59.968 50.000 0.00 0.00 0.00 5.34
896 907 2.285977 GGTTCGATTTATGAAGGGCGT 58.714 47.619 0.00 0.00 0.00 5.68
897 908 2.285083 TGGTTCGATTTATGAAGGGCG 58.715 47.619 0.00 0.00 0.00 6.13
898 909 3.882888 TGATGGTTCGATTTATGAAGGGC 59.117 43.478 0.00 0.00 0.00 5.19
899 910 4.275936 GGTGATGGTTCGATTTATGAAGGG 59.724 45.833 0.00 0.00 0.00 3.95
900 911 4.024893 CGGTGATGGTTCGATTTATGAAGG 60.025 45.833 0.00 0.00 0.00 3.46
901 912 4.808895 TCGGTGATGGTTCGATTTATGAAG 59.191 41.667 0.00 0.00 0.00 3.02
902 913 4.760878 TCGGTGATGGTTCGATTTATGAA 58.239 39.130 0.00 0.00 0.00 2.57
903 914 4.368315 CTCGGTGATGGTTCGATTTATGA 58.632 43.478 0.00 0.00 32.32 2.15
904 915 3.494626 CCTCGGTGATGGTTCGATTTATG 59.505 47.826 0.00 0.00 32.32 1.90
905 916 3.386726 TCCTCGGTGATGGTTCGATTTAT 59.613 43.478 0.00 0.00 32.32 1.40
906 917 2.761767 TCCTCGGTGATGGTTCGATTTA 59.238 45.455 0.00 0.00 32.32 1.40
907 918 1.553248 TCCTCGGTGATGGTTCGATTT 59.447 47.619 0.00 0.00 32.32 2.17
908 919 1.191535 TCCTCGGTGATGGTTCGATT 58.808 50.000 0.00 0.00 32.32 3.34
909 920 1.137086 CTTCCTCGGTGATGGTTCGAT 59.863 52.381 0.00 0.00 32.32 3.59
910 921 0.530744 CTTCCTCGGTGATGGTTCGA 59.469 55.000 0.00 0.00 0.00 3.71
911 922 0.246635 ACTTCCTCGGTGATGGTTCG 59.753 55.000 0.00 0.00 0.00 3.95
912 923 2.347731 GAACTTCCTCGGTGATGGTTC 58.652 52.381 0.00 0.00 0.00 3.62
913 924 1.003233 GGAACTTCCTCGGTGATGGTT 59.997 52.381 0.00 0.00 32.53 3.67
914 925 0.613777 GGAACTTCCTCGGTGATGGT 59.386 55.000 0.00 0.00 32.53 3.55
915 926 0.613260 TGGAACTTCCTCGGTGATGG 59.387 55.000 9.31 0.00 37.46 3.51
916 927 2.283298 CATGGAACTTCCTCGGTGATG 58.717 52.381 9.31 0.00 37.46 3.07
917 928 1.407437 GCATGGAACTTCCTCGGTGAT 60.407 52.381 9.31 0.00 37.46 3.06
918 929 0.036388 GCATGGAACTTCCTCGGTGA 60.036 55.000 9.31 0.00 37.46 4.02
919 930 0.036010 AGCATGGAACTTCCTCGGTG 60.036 55.000 9.31 4.54 37.46 4.94
920 931 0.693049 AAGCATGGAACTTCCTCGGT 59.307 50.000 9.31 3.11 37.46 4.69
921 932 1.740025 GAAAGCATGGAACTTCCTCGG 59.260 52.381 9.31 0.32 37.46 4.63
922 933 1.394917 CGAAAGCATGGAACTTCCTCG 59.605 52.381 9.31 5.14 37.46 4.63
923 934 2.675348 CTCGAAAGCATGGAACTTCCTC 59.325 50.000 9.31 0.00 37.46 3.71
924 935 2.303022 TCTCGAAAGCATGGAACTTCCT 59.697 45.455 9.31 0.00 37.46 3.36
925 936 2.675348 CTCTCGAAAGCATGGAACTTCC 59.325 50.000 0.20 0.20 36.96 3.46
926 937 2.675348 CCTCTCGAAAGCATGGAACTTC 59.325 50.000 0.00 0.00 0.00 3.01
927 938 2.616510 CCCTCTCGAAAGCATGGAACTT 60.617 50.000 0.00 0.00 0.00 2.66
928 939 1.065854 CCCTCTCGAAAGCATGGAACT 60.066 52.381 0.00 0.00 0.00 3.01
929 940 1.339151 ACCCTCTCGAAAGCATGGAAC 60.339 52.381 0.00 0.00 0.00 3.62
930 941 0.984230 ACCCTCTCGAAAGCATGGAA 59.016 50.000 0.00 0.00 0.00 3.53
931 942 1.860641 TACCCTCTCGAAAGCATGGA 58.139 50.000 0.00 0.00 0.00 3.41
932 943 2.691409 TTACCCTCTCGAAAGCATGG 57.309 50.000 0.00 0.00 0.00 3.66
933 944 5.116180 TGTATTTACCCTCTCGAAAGCATG 58.884 41.667 0.00 0.00 0.00 4.06
934 945 5.353394 TGTATTTACCCTCTCGAAAGCAT 57.647 39.130 0.00 0.00 0.00 3.79
935 946 4.811969 TGTATTTACCCTCTCGAAAGCA 57.188 40.909 0.00 0.00 0.00 3.91
936 947 5.357257 TCATGTATTTACCCTCTCGAAAGC 58.643 41.667 0.00 0.00 0.00 3.51
937 948 7.437748 AGATCATGTATTTACCCTCTCGAAAG 58.562 38.462 0.00 0.00 0.00 2.62
938 949 7.361457 AGATCATGTATTTACCCTCTCGAAA 57.639 36.000 0.00 0.00 0.00 3.46
939 950 6.978674 AGATCATGTATTTACCCTCTCGAA 57.021 37.500 0.00 0.00 0.00 3.71
940 951 6.978674 AAGATCATGTATTTACCCTCTCGA 57.021 37.500 0.00 0.00 0.00 4.04
941 952 7.096023 CGAAAAGATCATGTATTTACCCTCTCG 60.096 40.741 0.00 0.00 0.00 4.04
942 953 7.711339 ACGAAAAGATCATGTATTTACCCTCTC 59.289 37.037 0.00 0.00 0.00 3.20
943 954 7.565680 ACGAAAAGATCATGTATTTACCCTCT 58.434 34.615 0.00 0.00 0.00 3.69
944 955 7.787725 ACGAAAAGATCATGTATTTACCCTC 57.212 36.000 0.00 0.00 0.00 4.30
945 956 8.701895 TCTACGAAAAGATCATGTATTTACCCT 58.298 33.333 0.00 0.00 0.00 4.34
946 957 8.882415 TCTACGAAAAGATCATGTATTTACCC 57.118 34.615 0.00 0.00 0.00 3.69
1082 1093 4.985538 TCTTAATTGTTGAGAGGGTTGCT 58.014 39.130 0.00 0.00 0.00 3.91
1093 1104 6.813649 TCTTCGAGTGGATCTCTTAATTGTTG 59.186 38.462 0.00 0.00 40.75 3.33
1094 1105 6.936279 TCTTCGAGTGGATCTCTTAATTGTT 58.064 36.000 0.00 0.00 40.75 2.83
1095 1106 6.531503 TCTTCGAGTGGATCTCTTAATTGT 57.468 37.500 0.00 0.00 40.75 2.71
1096 1107 6.813649 TGTTCTTCGAGTGGATCTCTTAATTG 59.186 38.462 0.00 0.00 40.75 2.32
1097 1108 6.814146 GTGTTCTTCGAGTGGATCTCTTAATT 59.186 38.462 0.00 0.00 40.75 1.40
1098 1109 6.334202 GTGTTCTTCGAGTGGATCTCTTAAT 58.666 40.000 0.00 0.00 40.75 1.40
1099 1110 5.619309 CGTGTTCTTCGAGTGGATCTCTTAA 60.619 44.000 0.00 0.00 40.75 1.85
1100 1111 4.142665 CGTGTTCTTCGAGTGGATCTCTTA 60.143 45.833 0.00 0.00 40.75 2.10
1101 1112 3.366476 CGTGTTCTTCGAGTGGATCTCTT 60.366 47.826 0.00 0.00 40.75 2.85
1102 1113 2.162608 CGTGTTCTTCGAGTGGATCTCT 59.837 50.000 0.00 0.00 40.75 3.10
1103 1114 2.520979 CGTGTTCTTCGAGTGGATCTC 58.479 52.381 0.00 0.00 39.62 2.75
1104 1115 1.202582 CCGTGTTCTTCGAGTGGATCT 59.797 52.381 0.00 0.00 0.00 2.75
1105 1116 1.201647 TCCGTGTTCTTCGAGTGGATC 59.798 52.381 0.00 0.00 0.00 3.36
1106 1117 1.202582 CTCCGTGTTCTTCGAGTGGAT 59.797 52.381 0.00 0.00 0.00 3.41
1107 1118 0.596577 CTCCGTGTTCTTCGAGTGGA 59.403 55.000 0.00 0.00 0.00 4.02
1108 1119 0.596577 TCTCCGTGTTCTTCGAGTGG 59.403 55.000 0.00 0.00 0.00 4.00
1109 1120 1.267261 AGTCTCCGTGTTCTTCGAGTG 59.733 52.381 0.00 0.00 0.00 3.51
1110 1121 1.606903 AGTCTCCGTGTTCTTCGAGT 58.393 50.000 0.00 0.00 0.00 4.18
1111 1122 3.826236 TTAGTCTCCGTGTTCTTCGAG 57.174 47.619 0.00 0.00 0.00 4.04
1112 1123 4.778534 AATTAGTCTCCGTGTTCTTCGA 57.221 40.909 0.00 0.00 0.00 3.71
1113 1124 6.585322 ACTTAAATTAGTCTCCGTGTTCTTCG 59.415 38.462 0.00 0.00 0.00 3.79
1114 1125 7.886405 ACTTAAATTAGTCTCCGTGTTCTTC 57.114 36.000 0.00 0.00 0.00 2.87
1115 1126 9.420551 CTTACTTAAATTAGTCTCCGTGTTCTT 57.579 33.333 0.00 0.00 0.00 2.52
1116 1127 8.800332 TCTTACTTAAATTAGTCTCCGTGTTCT 58.200 33.333 0.00 0.00 0.00 3.01
1117 1128 8.858186 GTCTTACTTAAATTAGTCTCCGTGTTC 58.142 37.037 0.00 0.00 0.00 3.18
1118 1129 7.816513 GGTCTTACTTAAATTAGTCTCCGTGTT 59.183 37.037 0.00 0.00 0.00 3.32
1119 1130 7.318893 GGTCTTACTTAAATTAGTCTCCGTGT 58.681 38.462 0.00 0.00 0.00 4.49
1120 1131 6.755607 GGGTCTTACTTAAATTAGTCTCCGTG 59.244 42.308 0.00 0.00 0.00 4.94
1121 1132 6.127225 GGGGTCTTACTTAAATTAGTCTCCGT 60.127 42.308 0.00 0.00 0.00 4.69
1122 1133 6.127253 TGGGGTCTTACTTAAATTAGTCTCCG 60.127 42.308 0.00 0.00 0.00 4.63
1123 1134 7.191593 TGGGGTCTTACTTAAATTAGTCTCC 57.808 40.000 0.00 0.00 0.00 3.71
1124 1135 8.537858 TCTTGGGGTCTTACTTAAATTAGTCTC 58.462 37.037 0.00 0.00 0.00 3.36
1125 1136 8.445361 TCTTGGGGTCTTACTTAAATTAGTCT 57.555 34.615 0.00 0.00 0.00 3.24
1126 1137 9.682465 AATCTTGGGGTCTTACTTAAATTAGTC 57.318 33.333 0.00 0.00 0.00 2.59
1127 1138 9.462606 CAATCTTGGGGTCTTACTTAAATTAGT 57.537 33.333 0.00 0.00 0.00 2.24
1128 1139 9.681062 TCAATCTTGGGGTCTTACTTAAATTAG 57.319 33.333 0.00 0.00 0.00 1.73
1130 1141 8.950007 TTCAATCTTGGGGTCTTACTTAAATT 57.050 30.769 0.00 0.00 0.00 1.82
1131 1142 7.615757 CCTTCAATCTTGGGGTCTTACTTAAAT 59.384 37.037 0.00 0.00 0.00 1.40
1132 1143 6.946009 CCTTCAATCTTGGGGTCTTACTTAAA 59.054 38.462 0.00 0.00 0.00 1.52
1133 1144 6.481643 CCTTCAATCTTGGGGTCTTACTTAA 58.518 40.000 0.00 0.00 0.00 1.85
1134 1145 5.045140 CCCTTCAATCTTGGGGTCTTACTTA 60.045 44.000 0.00 0.00 37.37 2.24
1135 1146 4.263949 CCCTTCAATCTTGGGGTCTTACTT 60.264 45.833 0.00 0.00 37.37 2.24
1136 1147 3.267031 CCCTTCAATCTTGGGGTCTTACT 59.733 47.826 0.00 0.00 37.37 2.24
1137 1148 3.621558 CCCTTCAATCTTGGGGTCTTAC 58.378 50.000 0.00 0.00 37.37 2.34
1139 1150 2.907458 CCCTTCAATCTTGGGGTCTT 57.093 50.000 0.00 0.00 37.37 3.01
1330 1524 2.309613 TCTTGTGCACCTTTTCATGCT 58.690 42.857 15.69 0.00 42.55 3.79
1910 2868 8.993121 ACACATTTCATCGAAATATCTATCCAC 58.007 33.333 1.83 0.00 39.82 4.02
2007 2970 0.248743 CCATGCCATGCGTCATGTTC 60.249 55.000 15.46 9.36 39.94 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.