Multiple sequence alignment - TraesCS2D01G216300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G216300 chr2D 100.000 3154 0 0 1 3154 179169185 179166032 0.000000e+00 5825
1 TraesCS2D01G216300 chr2D 88.562 883 57 27 2272 3153 533985879 533985040 0.000000e+00 1031
2 TraesCS2D01G216300 chr2D 89.639 830 58 18 2326 3154 651583703 651584505 0.000000e+00 1031
3 TraesCS2D01G216300 chr2D 90.767 769 63 6 1 762 43435379 43434612 0.000000e+00 1020
4 TraesCS2D01G216300 chr2D 92.271 207 13 2 2184 2389 651583496 651583700 1.110000e-74 291
5 TraesCS2D01G216300 chr2B 95.211 1420 38 14 765 2177 236095383 236093987 0.000000e+00 2218
6 TraesCS2D01G216300 chr2B 80.141 851 120 29 2269 3095 755952017 755951192 9.740000e-165 590
7 TraesCS2D01G216300 chr2A 92.456 1352 43 18 835 2177 193728327 193727026 0.000000e+00 1877
8 TraesCS2D01G216300 chr4A 90.086 928 69 14 2184 3090 680463458 680464383 0.000000e+00 1182
9 TraesCS2D01G216300 chr4A 91.253 766 59 6 4 762 185225390 185224626 0.000000e+00 1037
10 TraesCS2D01G216300 chr4A 81.410 936 121 30 2184 3090 675174948 675174037 0.000000e+00 715
11 TraesCS2D01G216300 chr4A 80.983 936 124 32 2184 3090 675152398 675151488 0.000000e+00 693
12 TraesCS2D01G216300 chr7D 88.653 943 68 22 2184 3099 614242865 614241935 0.000000e+00 1112
13 TraesCS2D01G216300 chr7D 85.700 979 90 28 2184 3154 9300611 9299675 0.000000e+00 987
14 TraesCS2D01G216300 chr7D 89.610 770 70 10 1 762 425431348 425432115 0.000000e+00 970
15 TraesCS2D01G216300 chr6D 89.840 876 68 14 2294 3152 37613679 37614550 0.000000e+00 1105
16 TraesCS2D01G216300 chr3B 86.713 1001 98 19 2184 3154 685300860 685299865 0.000000e+00 1079
17 TraesCS2D01G216300 chr3B 78.768 909 147 30 2269 3154 793039709 793040594 4.570000e-158 568
18 TraesCS2D01G216300 chr7A 92.037 766 55 5 1 762 138552800 138553563 0.000000e+00 1072
19 TraesCS2D01G216300 chr7A 91.253 766 62 4 1 762 648342828 648342064 0.000000e+00 1038
20 TraesCS2D01G216300 chr7A 90.086 232 21 2 2191 2421 644484840 644485070 1.840000e-77 300
21 TraesCS2D01G216300 chr3A 92.973 740 43 7 34 765 477142817 477142079 0.000000e+00 1070
22 TraesCS2D01G216300 chr5D 92.493 746 52 4 1 743 505562598 505561854 0.000000e+00 1064
23 TraesCS2D01G216300 chr5D 84.691 921 105 21 2184 3095 251828086 251828979 0.000000e+00 887
24 TraesCS2D01G216300 chr3D 91.721 773 55 7 1 766 573135965 573136735 0.000000e+00 1064
25 TraesCS2D01G216300 chr5B 90.285 772 67 6 1 765 5412981 5412211 0.000000e+00 1003
26 TraesCS2D01G216300 chr5B 80.138 1012 137 48 2184 3152 522784969 522783979 0.000000e+00 697
27 TraesCS2D01G216300 chr7B 81.587 945 125 38 2184 3093 681571418 681570488 0.000000e+00 736
28 TraesCS2D01G216300 chr7B 80.645 403 53 11 2184 2580 571864755 571865138 3.980000e-74 289


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G216300 chr2D 179166032 179169185 3153 True 5825 5825 100.000 1 3154 1 chr2D.!!$R2 3153
1 TraesCS2D01G216300 chr2D 533985040 533985879 839 True 1031 1031 88.562 2272 3153 1 chr2D.!!$R3 881
2 TraesCS2D01G216300 chr2D 43434612 43435379 767 True 1020 1020 90.767 1 762 1 chr2D.!!$R1 761
3 TraesCS2D01G216300 chr2D 651583496 651584505 1009 False 661 1031 90.955 2184 3154 2 chr2D.!!$F1 970
4 TraesCS2D01G216300 chr2B 236093987 236095383 1396 True 2218 2218 95.211 765 2177 1 chr2B.!!$R1 1412
5 TraesCS2D01G216300 chr2B 755951192 755952017 825 True 590 590 80.141 2269 3095 1 chr2B.!!$R2 826
6 TraesCS2D01G216300 chr2A 193727026 193728327 1301 True 1877 1877 92.456 835 2177 1 chr2A.!!$R1 1342
7 TraesCS2D01G216300 chr4A 680463458 680464383 925 False 1182 1182 90.086 2184 3090 1 chr4A.!!$F1 906
8 TraesCS2D01G216300 chr4A 185224626 185225390 764 True 1037 1037 91.253 4 762 1 chr4A.!!$R1 758
9 TraesCS2D01G216300 chr4A 675174037 675174948 911 True 715 715 81.410 2184 3090 1 chr4A.!!$R3 906
10 TraesCS2D01G216300 chr4A 675151488 675152398 910 True 693 693 80.983 2184 3090 1 chr4A.!!$R2 906
11 TraesCS2D01G216300 chr7D 614241935 614242865 930 True 1112 1112 88.653 2184 3099 1 chr7D.!!$R2 915
12 TraesCS2D01G216300 chr7D 9299675 9300611 936 True 987 987 85.700 2184 3154 1 chr7D.!!$R1 970
13 TraesCS2D01G216300 chr7D 425431348 425432115 767 False 970 970 89.610 1 762 1 chr7D.!!$F1 761
14 TraesCS2D01G216300 chr6D 37613679 37614550 871 False 1105 1105 89.840 2294 3152 1 chr6D.!!$F1 858
15 TraesCS2D01G216300 chr3B 685299865 685300860 995 True 1079 1079 86.713 2184 3154 1 chr3B.!!$R1 970
16 TraesCS2D01G216300 chr3B 793039709 793040594 885 False 568 568 78.768 2269 3154 1 chr3B.!!$F1 885
17 TraesCS2D01G216300 chr7A 138552800 138553563 763 False 1072 1072 92.037 1 762 1 chr7A.!!$F1 761
18 TraesCS2D01G216300 chr7A 648342064 648342828 764 True 1038 1038 91.253 1 762 1 chr7A.!!$R1 761
19 TraesCS2D01G216300 chr3A 477142079 477142817 738 True 1070 1070 92.973 34 765 1 chr3A.!!$R1 731
20 TraesCS2D01G216300 chr5D 505561854 505562598 744 True 1064 1064 92.493 1 743 1 chr5D.!!$R1 742
21 TraesCS2D01G216300 chr5D 251828086 251828979 893 False 887 887 84.691 2184 3095 1 chr5D.!!$F1 911
22 TraesCS2D01G216300 chr3D 573135965 573136735 770 False 1064 1064 91.721 1 766 1 chr3D.!!$F1 765
23 TraesCS2D01G216300 chr5B 5412211 5412981 770 True 1003 1003 90.285 1 765 1 chr5B.!!$R1 764
24 TraesCS2D01G216300 chr5B 522783979 522784969 990 True 697 697 80.138 2184 3152 1 chr5B.!!$R2 968
25 TraesCS2D01G216300 chr7B 681570488 681571418 930 True 736 736 81.587 2184 3093 1 chr7B.!!$R1 909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.471617 ATTCTGGCCCAATCTCGAGG 59.528 55.0 13.56 0.00 0.00 4.63 F
1115 1139 0.250209 CCTCTGCCATTGATCCCGAG 60.250 60.0 0.00 0.00 0.00 4.63 F
2056 2089 0.179034 GGATCCTGCACAGGGTGATC 60.179 60.0 16.52 11.64 43.34 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1891 1924 1.196766 TGAGCAGGGACATGACAGCT 61.197 55.000 0.00 4.12 34.61 4.24 R
2136 2170 0.320421 TTGTCAGAAGCACCGTAGCC 60.320 55.000 0.00 0.00 34.23 3.93 R
2995 3255 1.078143 GCAACTCCCGATGAGCCTT 60.078 57.895 2.29 0.00 45.61 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.471617 ATTCTGGCCCAATCTCGAGG 59.528 55.000 13.56 0.00 0.00 4.63
169 171 6.740411 AGGTAGTTCACGTTGTTGTTTTTA 57.260 33.333 0.00 0.00 0.00 1.52
254 256 7.230510 TGGCGAACAATTCATATAGCCTTTAAT 59.769 33.333 4.75 0.00 43.35 1.40
292 294 8.522830 AGTTGACATTGAATCGTTATTTGGAAT 58.477 29.630 0.00 0.00 0.00 3.01
392 395 7.168135 GGAATTGCAGGAACGATATGATTTTTC 59.832 37.037 0.00 0.00 0.00 2.29
439 442 7.719871 TTTGTAGGTTATCTTCAGAGCTACT 57.280 36.000 11.63 0.00 42.10 2.57
445 448 1.534729 TCTTCAGAGCTACTGCGTGA 58.465 50.000 7.94 0.00 45.38 4.35
494 497 1.492993 GGACTCCAGGGAGCCTTTGT 61.493 60.000 15.18 0.00 45.54 2.83
639 644 9.283768 TGATCTTGAGCATGTACTTTTCTTTTA 57.716 29.630 0.00 0.00 0.00 1.52
650 656 9.758651 ATGTACTTTTCTTTTATTTTTCCGCTT 57.241 25.926 0.00 0.00 0.00 4.68
722 731 6.543430 TTTAATAAGAGGGTTGCATGCATT 57.457 33.333 23.37 14.07 0.00 3.56
781 795 3.703286 ACAAGGAAGCGGTTTTTACAC 57.297 42.857 0.00 0.00 0.00 2.90
788 802 2.927028 AGCGGTTTTTACACAAGGTCT 58.073 42.857 0.00 0.00 0.00 3.85
789 803 4.075963 AGCGGTTTTTACACAAGGTCTA 57.924 40.909 0.00 0.00 0.00 2.59
790 804 3.811497 AGCGGTTTTTACACAAGGTCTAC 59.189 43.478 0.00 0.00 0.00 2.59
806 820 7.705325 ACAAGGTCTACTACTATTATTGTTGCG 59.295 37.037 0.00 0.00 0.00 4.85
908 932 4.473520 ATTGGCGCGAGGTCCAGG 62.474 66.667 12.10 0.00 33.32 4.45
1115 1139 0.250209 CCTCTGCCATTGATCCCGAG 60.250 60.000 0.00 0.00 0.00 4.63
1116 1140 0.755079 CTCTGCCATTGATCCCGAGA 59.245 55.000 0.00 0.00 0.00 4.04
1117 1141 0.465705 TCTGCCATTGATCCCGAGAC 59.534 55.000 0.00 0.00 0.00 3.36
1118 1142 0.533755 CTGCCATTGATCCCGAGACC 60.534 60.000 0.00 0.00 0.00 3.85
1318 1342 0.725117 GTTACGGCACTTGATTCCCG 59.275 55.000 0.00 0.00 45.80 5.14
1387 1411 1.953138 CATCTGACCGATCTGCCGC 60.953 63.158 0.00 0.00 0.00 6.53
1520 1553 2.872557 CGAGGCTCGTACGTGGAA 59.127 61.111 27.92 0.00 34.72 3.53
1535 1568 1.224592 GGAATGGACCGGCTGACAT 59.775 57.895 0.00 0.00 0.00 3.06
1973 2006 3.002042 GCCATGATCAGAAGTCATTCGTG 59.998 47.826 0.09 0.00 40.58 4.35
1974 2007 4.186926 CCATGATCAGAAGTCATTCGTGT 58.813 43.478 0.09 0.00 40.58 4.49
1975 2008 4.033702 CCATGATCAGAAGTCATTCGTGTG 59.966 45.833 0.09 0.00 40.58 3.82
1976 2009 4.257267 TGATCAGAAGTCATTCGTGTGT 57.743 40.909 0.00 0.00 40.58 3.72
1977 2010 3.989817 TGATCAGAAGTCATTCGTGTGTG 59.010 43.478 0.00 0.00 40.58 3.82
1978 2011 2.135139 TCAGAAGTCATTCGTGTGTGC 58.865 47.619 0.00 0.00 40.58 4.57
1987 2020 3.572539 CGTGTGTGCCGTGTGCTT 61.573 61.111 0.00 0.00 42.00 3.91
2013 2046 2.868839 GCTGGTTTCTGTTGCATGCATT 60.869 45.455 23.37 0.00 0.00 3.56
2056 2089 0.179034 GGATCCTGCACAGGGTGATC 60.179 60.000 16.52 11.64 43.34 2.92
2126 2160 3.372440 ACCAGAAGGGCTAGGAATTTG 57.628 47.619 0.00 0.00 42.05 2.32
2129 2163 1.063642 AGAAGGGCTAGGAATTTGGGC 60.064 52.381 0.00 0.00 0.00 5.36
2130 2164 0.709992 AAGGGCTAGGAATTTGGGCA 59.290 50.000 0.00 0.00 0.00 5.36
2131 2165 0.259938 AGGGCTAGGAATTTGGGCAG 59.740 55.000 0.00 0.00 0.00 4.85
2132 2166 0.258774 GGGCTAGGAATTTGGGCAGA 59.741 55.000 0.00 0.00 0.00 4.26
2135 2169 2.293170 GCTAGGAATTTGGGCAGAGTC 58.707 52.381 0.00 0.00 0.00 3.36
2136 2170 2.555199 CTAGGAATTTGGGCAGAGTCG 58.445 52.381 0.00 0.00 0.00 4.18
2137 2171 0.035056 AGGAATTTGGGCAGAGTCGG 60.035 55.000 0.00 0.00 0.00 4.79
2138 2172 1.657751 GGAATTTGGGCAGAGTCGGC 61.658 60.000 6.73 6.73 0.00 5.54
2139 2173 0.678048 GAATTTGGGCAGAGTCGGCT 60.678 55.000 15.02 0.00 0.00 5.52
2140 2174 0.618458 AATTTGGGCAGAGTCGGCTA 59.382 50.000 15.02 3.08 0.00 3.93
2141 2175 0.107654 ATTTGGGCAGAGTCGGCTAC 60.108 55.000 15.02 9.02 0.00 3.58
2146 2180 2.202623 CAGAGTCGGCTACGGTGC 60.203 66.667 0.00 0.00 41.39 5.01
2162 2196 3.311596 ACGGTGCTTCTGACAAAGTAAAC 59.688 43.478 0.00 0.00 0.00 2.01
2180 2214 8.974060 AAGTAAACTTTGGAATGTTAGACTCA 57.026 30.769 0.00 0.00 30.82 3.41
2181 2215 8.379457 AGTAAACTTTGGAATGTTAGACTCAC 57.621 34.615 0.00 0.00 0.00 3.51
2182 2216 8.211629 AGTAAACTTTGGAATGTTAGACTCACT 58.788 33.333 0.00 0.00 0.00 3.41
2246 2281 6.811574 ACCCCTTCATTAAAAAGGTAGGATT 58.188 36.000 15.27 0.00 41.50 3.01
2251 2286 7.615757 CCTTCATTAAAAAGGTAGGATTGTCCT 59.384 37.037 10.47 3.69 41.33 3.85
2324 2410 1.026182 TGTACGTCGACTGCCCGTAT 61.026 55.000 14.70 0.00 39.04 3.06
2697 2921 4.742201 CCCACCGACGCACTCCAG 62.742 72.222 0.00 0.00 0.00 3.86
2707 2931 2.502080 CACTCCAGCGACGACGAC 60.502 66.667 12.29 2.46 42.66 4.34
2708 2932 4.086178 ACTCCAGCGACGACGACG 62.086 66.667 15.13 15.13 42.66 5.12
2779 3036 3.827898 GCTCGTGGCCGACTAGCT 61.828 66.667 18.32 0.00 39.70 3.32
2995 3255 1.079612 TACTGGAGAGTCGTCGCGA 60.080 57.895 3.71 3.71 33.21 5.87
3002 3262 3.324099 GAGTCGTCGCGAAGGCTCA 62.324 63.158 39.13 13.66 40.45 4.26
3015 3275 2.184322 GCTCATCGGGAGTTGCGA 59.816 61.111 6.83 0.00 45.88 5.10
3016 3276 2.167861 GCTCATCGGGAGTTGCGAC 61.168 63.158 0.00 0.00 45.88 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.724229 ACCTTAACCTTTCAAATATGTAACGAC 58.276 33.333 0.00 0.00 0.00 4.34
169 171 8.963725 AGTGTTGTATTGTTTCATCATGATCAT 58.036 29.630 4.86 1.18 0.00 2.45
254 256 4.081365 TCAATGTCAACTGGAGGCGTAATA 60.081 41.667 0.00 0.00 0.00 0.98
260 262 2.096496 CGATTCAATGTCAACTGGAGGC 59.904 50.000 0.00 0.00 0.00 4.70
292 294 0.400213 CTCAACCCCAGCTAACCACA 59.600 55.000 0.00 0.00 0.00 4.17
415 418 7.548097 CAGTAGCTCTGAAGATAACCTACAAA 58.452 38.462 7.22 0.00 46.27 2.83
419 422 4.276183 CGCAGTAGCTCTGAAGATAACCTA 59.724 45.833 14.86 0.00 46.27 3.08
439 442 1.444724 CCACGTACGGATTCACGCA 60.445 57.895 21.06 0.00 41.80 5.24
445 448 2.424956 GAGTAAGGACCACGTACGGATT 59.575 50.000 21.06 1.97 38.79 3.01
650 656 8.005466 CGTTAAAGTATTACAACTCGCAAAAGA 58.995 33.333 0.00 0.00 0.00 2.52
722 731 1.153309 CGGCCTCTGCATCATGACA 60.153 57.895 0.00 0.00 40.13 3.58
762 776 3.701532 TGTGTAAAAACCGCTTCCTTG 57.298 42.857 0.00 0.00 0.00 3.61
770 784 6.218746 AGTAGTAGACCTTGTGTAAAAACCG 58.781 40.000 0.00 0.00 0.00 4.44
781 795 7.705325 ACGCAACAATAATAGTAGTAGACCTTG 59.295 37.037 0.00 0.00 0.00 3.61
788 802 6.566141 TCTGCACGCAACAATAATAGTAGTA 58.434 36.000 0.00 0.00 0.00 1.82
789 803 5.416083 TCTGCACGCAACAATAATAGTAGT 58.584 37.500 0.00 0.00 0.00 2.73
790 804 5.966636 TCTGCACGCAACAATAATAGTAG 57.033 39.130 0.00 0.00 0.00 2.57
806 820 0.529378 CTGCCCTCCAATTTCTGCAC 59.471 55.000 0.00 0.00 0.00 4.57
865 889 5.243507 TCTGCATGTTTTCTATTCAAGCCAA 59.756 36.000 0.00 0.00 0.00 4.52
866 890 4.766373 TCTGCATGTTTTCTATTCAAGCCA 59.234 37.500 0.00 0.00 0.00 4.75
867 891 5.124457 TCTCTGCATGTTTTCTATTCAAGCC 59.876 40.000 0.00 0.00 0.00 4.35
868 892 6.187125 TCTCTGCATGTTTTCTATTCAAGC 57.813 37.500 0.00 0.00 0.00 4.01
908 932 2.508663 GGCTAGGAACGTCGTGGC 60.509 66.667 0.00 0.00 37.90 5.01
1115 1139 4.493747 CGCCTCTTCCGGTCGGTC 62.494 72.222 9.36 0.00 36.47 4.79
1348 1372 4.588899 TGATCAAACCACGGATCAAGAAT 58.411 39.130 0.00 0.00 44.97 2.40
1520 1553 1.348008 ATCCATGTCAGCCGGTCCAT 61.348 55.000 1.90 0.00 0.00 3.41
1535 1568 2.434843 ATTCTGCGCGGGAGATCCA 61.435 57.895 17.88 0.00 37.91 3.41
1891 1924 1.196766 TGAGCAGGGACATGACAGCT 61.197 55.000 0.00 4.12 34.61 4.24
1978 2011 4.671549 CAGCGCACAAGCACACGG 62.672 66.667 11.47 0.00 42.27 4.94
1987 2020 1.726865 CAACAGAAACCAGCGCACA 59.273 52.632 11.47 0.00 0.00 4.57
2013 2046 8.544622 TCCAGAATTACATATGACCACAAACTA 58.455 33.333 10.38 0.00 0.00 2.24
2056 2089 9.405587 ACAAGTTAAAATGTTAATCGGTGAATG 57.594 29.630 0.00 0.00 31.94 2.67
2126 2160 4.208686 CCGTAGCCGACTCTGCCC 62.209 72.222 0.00 0.00 35.63 5.36
2129 2163 2.202623 GCACCGTAGCCGACTCTG 60.203 66.667 0.00 0.00 35.63 3.35
2130 2164 1.935327 GAAGCACCGTAGCCGACTCT 61.935 60.000 0.00 0.00 35.63 3.24
2131 2165 1.516603 GAAGCACCGTAGCCGACTC 60.517 63.158 0.00 0.00 35.63 3.36
2132 2166 1.977544 AGAAGCACCGTAGCCGACT 60.978 57.895 0.00 0.00 35.63 4.18
2135 2169 1.805945 GTCAGAAGCACCGTAGCCG 60.806 63.158 0.00 0.00 34.23 5.52
2136 2170 0.320421 TTGTCAGAAGCACCGTAGCC 60.320 55.000 0.00 0.00 34.23 3.93
2137 2171 1.461127 CTTTGTCAGAAGCACCGTAGC 59.539 52.381 0.00 0.00 0.00 3.58
2138 2172 2.755650 ACTTTGTCAGAAGCACCGTAG 58.244 47.619 0.00 0.00 0.00 3.51
2139 2173 2.902705 ACTTTGTCAGAAGCACCGTA 57.097 45.000 0.00 0.00 0.00 4.02
2140 2174 2.902705 TACTTTGTCAGAAGCACCGT 57.097 45.000 0.00 0.00 0.00 4.83
2141 2175 3.560068 AGTTTACTTTGTCAGAAGCACCG 59.440 43.478 0.00 0.00 0.00 4.94
2162 2196 7.962964 TGTAAGTGAGTCTAACATTCCAAAG 57.037 36.000 0.00 0.00 0.00 2.77
2177 2211 6.938030 TGTTGTATTTAGGGGTTGTAAGTGAG 59.062 38.462 0.00 0.00 0.00 3.51
2178 2212 6.839454 TGTTGTATTTAGGGGTTGTAAGTGA 58.161 36.000 0.00 0.00 0.00 3.41
2179 2213 7.364970 GTTGTTGTATTTAGGGGTTGTAAGTG 58.635 38.462 0.00 0.00 0.00 3.16
2180 2214 6.205270 CGTTGTTGTATTTAGGGGTTGTAAGT 59.795 38.462 0.00 0.00 0.00 2.24
2181 2215 6.348704 CCGTTGTTGTATTTAGGGGTTGTAAG 60.349 42.308 0.00 0.00 0.00 2.34
2182 2216 5.472820 CCGTTGTTGTATTTAGGGGTTGTAA 59.527 40.000 0.00 0.00 0.00 2.41
2246 2281 3.625764 GCGGCTTTTTATGTGATAGGACA 59.374 43.478 0.00 0.00 0.00 4.02
2251 2286 1.332375 GCGGCGGCTTTTTATGTGATA 59.668 47.619 9.78 0.00 35.83 2.15
2306 2391 0.937304 TATACGGGCAGTCGACGTAC 59.063 55.000 10.46 3.36 44.52 3.67
2459 2637 2.257371 CATCCGTCCACACGTCGT 59.743 61.111 0.00 0.00 45.17 4.34
2779 3036 3.303135 AGTCTCCGGCGTGCTCAA 61.303 61.111 6.01 0.00 0.00 3.02
2995 3255 1.078143 GCAACTCCCGATGAGCCTT 60.078 57.895 2.29 0.00 45.61 4.35
3002 3262 4.143333 CCGGTCGCAACTCCCGAT 62.143 66.667 0.00 0.00 44.41 4.18
3090 3434 4.379243 CGAGCTTGGAGGTGGCGT 62.379 66.667 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.