Multiple sequence alignment - TraesCS2D01G215600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G215600 | chr2D | 100.000 | 2666 | 0 | 0 | 1 | 2666 | 178504683 | 178507348 | 0.000000e+00 | 4924 |
1 | TraesCS2D01G215600 | chr2D | 98.429 | 1973 | 23 | 6 | 699 | 2666 | 178852899 | 178854868 | 0.000000e+00 | 3465 |
2 | TraesCS2D01G215600 | chr2D | 91.748 | 1636 | 87 | 24 | 655 | 2268 | 178667058 | 178668667 | 0.000000e+00 | 2230 |
3 | TraesCS2D01G215600 | chr2D | 86.545 | 550 | 45 | 18 | 1 | 532 | 178666440 | 178666978 | 1.780000e-161 | 579 |
4 | TraesCS2D01G215600 | chr2D | 87.280 | 511 | 51 | 10 | 1 | 500 | 178852075 | 178852582 | 2.980000e-159 | 571 |
5 | TraesCS2D01G215600 | chr2D | 96.113 | 283 | 9 | 1 | 2384 | 2666 | 178668853 | 178669133 | 6.720000e-126 | 460 |
6 | TraesCS2D01G215600 | chr2D | 89.809 | 157 | 2 | 2 | 2258 | 2400 | 178668685 | 178668841 | 3.500000e-44 | 189 |
7 | TraesCS2D01G215600 | chr2D | 98.851 | 87 | 1 | 0 | 533 | 619 | 257754473 | 257754387 | 3.550000e-34 | 156 |
8 | TraesCS2D01G215600 | chr2D | 98.592 | 71 | 1 | 0 | 2014 | 2084 | 178854288 | 178854218 | 2.790000e-25 | 126 |
9 | TraesCS2D01G215600 | chr2B | 94.245 | 1842 | 71 | 16 | 836 | 2666 | 235050957 | 235052774 | 0.000000e+00 | 2782 |
10 | TraesCS2D01G215600 | chr2B | 92.605 | 1163 | 46 | 13 | 836 | 1988 | 235585077 | 235586209 | 0.000000e+00 | 1635 |
11 | TraesCS2D01G215600 | chr2B | 92.857 | 686 | 29 | 8 | 1985 | 2666 | 235586321 | 235586990 | 0.000000e+00 | 977 |
12 | TraesCS2D01G215600 | chr2B | 92.661 | 109 | 5 | 2 | 680 | 785 | 235050687 | 235050795 | 1.280000e-33 | 154 |
13 | TraesCS2D01G215600 | chr2B | 86.486 | 148 | 9 | 9 | 679 | 820 | 235584812 | 235584954 | 4.600000e-33 | 152 |
14 | TraesCS2D01G215600 | chr2B | 100.000 | 71 | 0 | 0 | 2014 | 2084 | 235052194 | 235052124 | 5.990000e-27 | 132 |
15 | TraesCS2D01G215600 | chr2A | 91.995 | 1749 | 79 | 23 | 947 | 2666 | 193547242 | 193548958 | 0.000000e+00 | 2398 |
16 | TraesCS2D01G215600 | chr2A | 87.838 | 148 | 10 | 3 | 637 | 782 | 193543798 | 193543939 | 1.640000e-37 | 167 |
17 | TraesCS2D01G215600 | chr7A | 96.809 | 94 | 2 | 1 | 528 | 620 | 48207237 | 48207330 | 3.550000e-34 | 156 |
18 | TraesCS2D01G215600 | chr7A | 95.745 | 94 | 3 | 1 | 528 | 620 | 48192182 | 48192275 | 1.650000e-32 | 150 |
19 | TraesCS2D01G215600 | chr4A | 96.703 | 91 | 3 | 0 | 531 | 621 | 589651907 | 589651997 | 4.600000e-33 | 152 |
20 | TraesCS2D01G215600 | chrUn | 96.703 | 91 | 2 | 1 | 531 | 620 | 224305628 | 224305538 | 1.650000e-32 | 150 |
21 | TraesCS2D01G215600 | chrUn | 96.703 | 91 | 2 | 1 | 531 | 620 | 375623357 | 375623267 | 1.650000e-32 | 150 |
22 | TraesCS2D01G215600 | chr5B | 96.667 | 90 | 3 | 0 | 531 | 620 | 420005034 | 420005123 | 1.650000e-32 | 150 |
23 | TraesCS2D01G215600 | chr3D | 96.591 | 88 | 3 | 0 | 533 | 620 | 41272483 | 41272570 | 2.140000e-31 | 147 |
24 | TraesCS2D01G215600 | chr1A | 95.652 | 92 | 3 | 1 | 531 | 621 | 100419447 | 100419356 | 2.140000e-31 | 147 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2D01G215600 | chr2D | 178504683 | 178507348 | 2665 | False | 4924.000000 | 4924 | 100.000000 | 1 | 2666 | 1 | chr2D.!!$F1 | 2665 |
1 | TraesCS2D01G215600 | chr2D | 178852075 | 178854868 | 2793 | False | 2018.000000 | 3465 | 92.854500 | 1 | 2666 | 2 | chr2D.!!$F3 | 2665 |
2 | TraesCS2D01G215600 | chr2D | 178666440 | 178669133 | 2693 | False | 864.500000 | 2230 | 91.053750 | 1 | 2666 | 4 | chr2D.!!$F2 | 2665 |
3 | TraesCS2D01G215600 | chr2B | 235050687 | 235052774 | 2087 | False | 1468.000000 | 2782 | 93.453000 | 680 | 2666 | 2 | chr2B.!!$F1 | 1986 |
4 | TraesCS2D01G215600 | chr2B | 235584812 | 235586990 | 2178 | False | 921.333333 | 1635 | 90.649333 | 679 | 2666 | 3 | chr2B.!!$F2 | 1987 |
5 | TraesCS2D01G215600 | chr2A | 193543798 | 193548958 | 5160 | False | 1282.500000 | 2398 | 89.916500 | 637 | 2666 | 2 | chr2A.!!$F1 | 2029 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
653 | 695 | 0.247854 | GAGCAATTTCGCCGCTCTTC | 60.248 | 55.0 | 7.32 | 0.0 | 46.86 | 2.87 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2072 | 5728 | 0.612174 | CAAGGACTCTCCCTCCGTCA | 60.612 | 60.0 | 0.0 | 0.0 | 37.19 | 4.35 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
60 | 61 | 1.876799 | AGGAGATAGCGAGATGTGACG | 59.123 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
68 | 69 | 0.740868 | CGAGATGTGACGGCAATGGT | 60.741 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
88 | 89 | 4.856801 | CATGGGGGCGCGCTACTT | 62.857 | 66.667 | 32.29 | 15.84 | 0.00 | 2.24 |
139 | 140 | 3.384789 | TGGATCTTGTTGACCTAGATCGG | 59.615 | 47.826 | 12.95 | 0.00 | 43.26 | 4.18 |
142 | 143 | 5.477291 | GGATCTTGTTGACCTAGATCGGATA | 59.523 | 44.000 | 12.95 | 0.00 | 43.26 | 2.59 |
210 | 216 | 1.964552 | CACCCAAGCTCATCTGATCC | 58.035 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
305 | 313 | 2.228822 | GTGTGTAAGGTCCTTGCCAATG | 59.771 | 50.000 | 14.84 | 0.00 | 0.00 | 2.82 |
334 | 342 | 3.739519 | GCATTCGGACATCTGAGTAGCTT | 60.740 | 47.826 | 0.00 | 0.00 | 32.05 | 3.74 |
373 | 381 | 3.119779 | GGTCCAAACAGTTCACGAACAAA | 60.120 | 43.478 | 12.21 | 0.00 | 43.47 | 2.83 |
374 | 382 | 4.477780 | GTCCAAACAGTTCACGAACAAAA | 58.522 | 39.130 | 12.21 | 0.00 | 43.47 | 2.44 |
375 | 383 | 4.918583 | GTCCAAACAGTTCACGAACAAAAA | 59.081 | 37.500 | 12.21 | 0.00 | 43.47 | 1.94 |
401 | 419 | 4.383850 | TTCACACACACCCTGATTTTTG | 57.616 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
405 | 423 | 3.513515 | ACACACACCCTGATTTTTGTTGT | 59.486 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
419 | 437 | 8.077991 | TGATTTTTGTTGTTGAGAGCTATTCAG | 58.922 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
428 | 446 | 5.273674 | TGAGAGCTATTCAGATGTCCAAG | 57.726 | 43.478 | 0.00 | 0.00 | 29.68 | 3.61 |
525 | 567 | 2.933056 | GCTGTTTACAGACAGGAGCCTC | 60.933 | 54.545 | 13.83 | 0.00 | 46.59 | 4.70 |
559 | 601 | 9.408648 | ACGGATCTGGATGTAATTTTTATTTCT | 57.591 | 29.630 | 6.47 | 0.00 | 0.00 | 2.52 |
560 | 602 | 9.669353 | CGGATCTGGATGTAATTTTTATTTCTG | 57.331 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
561 | 603 | 9.971922 | GGATCTGGATGTAATTTTTATTTCTGG | 57.028 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
564 | 606 | 9.308000 | TCTGGATGTAATTTTTATTTCTGGTGT | 57.692 | 29.630 | 0.00 | 0.00 | 0.00 | 4.16 |
565 | 607 | 9.927668 | CTGGATGTAATTTTTATTTCTGGTGTT | 57.072 | 29.630 | 0.00 | 0.00 | 0.00 | 3.32 |
566 | 608 | 9.921637 | TGGATGTAATTTTTATTTCTGGTGTTC | 57.078 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
567 | 609 | 9.072294 | GGATGTAATTTTTATTTCTGGTGTTCG | 57.928 | 33.333 | 0.00 | 0.00 | 0.00 | 3.95 |
568 | 610 | 9.620660 | GATGTAATTTTTATTTCTGGTGTTCGT | 57.379 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
569 | 611 | 9.974980 | ATGTAATTTTTATTTCTGGTGTTCGTT | 57.025 | 25.926 | 0.00 | 0.00 | 0.00 | 3.85 |
570 | 612 | 9.239002 | TGTAATTTTTATTTCTGGTGTTCGTTG | 57.761 | 29.630 | 0.00 | 0.00 | 0.00 | 4.10 |
571 | 613 | 9.240159 | GTAATTTTTATTTCTGGTGTTCGTTGT | 57.760 | 29.630 | 0.00 | 0.00 | 0.00 | 3.32 |
573 | 615 | 8.791355 | ATTTTTATTTCTGGTGTTCGTTGTAC | 57.209 | 30.769 | 0.00 | 0.00 | 0.00 | 2.90 |
574 | 616 | 7.556733 | TTTTATTTCTGGTGTTCGTTGTACT | 57.443 | 32.000 | 0.00 | 0.00 | 0.00 | 2.73 |
575 | 617 | 8.659925 | TTTTATTTCTGGTGTTCGTTGTACTA | 57.340 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
576 | 618 | 8.836268 | TTTATTTCTGGTGTTCGTTGTACTAT | 57.164 | 30.769 | 0.00 | 0.00 | 0.00 | 2.12 |
577 | 619 | 6.963049 | ATTTCTGGTGTTCGTTGTACTATC | 57.037 | 37.500 | 0.00 | 0.00 | 0.00 | 2.08 |
578 | 620 | 5.456548 | TTCTGGTGTTCGTTGTACTATCA | 57.543 | 39.130 | 0.00 | 0.00 | 0.00 | 2.15 |
579 | 621 | 5.654603 | TCTGGTGTTCGTTGTACTATCAT | 57.345 | 39.130 | 0.00 | 0.00 | 0.00 | 2.45 |
580 | 622 | 5.407502 | TCTGGTGTTCGTTGTACTATCATG | 58.592 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
581 | 623 | 5.184287 | TCTGGTGTTCGTTGTACTATCATGA | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 3.07 |
582 | 624 | 5.972935 | TGGTGTTCGTTGTACTATCATGAT | 58.027 | 37.500 | 13.81 | 13.81 | 0.00 | 2.45 |
583 | 625 | 6.403049 | TGGTGTTCGTTGTACTATCATGATT | 58.597 | 36.000 | 14.65 | 0.00 | 0.00 | 2.57 |
584 | 626 | 6.312672 | TGGTGTTCGTTGTACTATCATGATTG | 59.687 | 38.462 | 14.65 | 14.58 | 0.00 | 2.67 |
585 | 627 | 6.533723 | GGTGTTCGTTGTACTATCATGATTGA | 59.466 | 38.462 | 21.64 | 1.13 | 36.00 | 2.57 |
586 | 628 | 7.064134 | GGTGTTCGTTGTACTATCATGATTGAA | 59.936 | 37.037 | 21.64 | 5.14 | 34.96 | 2.69 |
587 | 629 | 8.110612 | GTGTTCGTTGTACTATCATGATTGAAG | 58.889 | 37.037 | 21.64 | 12.40 | 34.96 | 3.02 |
588 | 630 | 8.032451 | TGTTCGTTGTACTATCATGATTGAAGA | 58.968 | 33.333 | 21.64 | 6.21 | 34.96 | 2.87 |
589 | 631 | 9.035607 | GTTCGTTGTACTATCATGATTGAAGAT | 57.964 | 33.333 | 21.64 | 4.07 | 34.96 | 2.40 |
590 | 632 | 8.579682 | TCGTTGTACTATCATGATTGAAGATG | 57.420 | 34.615 | 21.64 | 10.62 | 34.96 | 2.90 |
591 | 633 | 8.413229 | TCGTTGTACTATCATGATTGAAGATGA | 58.587 | 33.333 | 21.64 | 12.27 | 34.96 | 2.92 |
592 | 634 | 9.034544 | CGTTGTACTATCATGATTGAAGATGAA | 57.965 | 33.333 | 21.64 | 4.00 | 34.96 | 2.57 |
602 | 644 | 9.856162 | TCATGATTGAAGATGAATAGATTGGAA | 57.144 | 29.630 | 0.00 | 0.00 | 0.00 | 3.53 |
604 | 646 | 9.863650 | ATGATTGAAGATGAATAGATTGGAAGT | 57.136 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
605 | 647 | 9.690913 | TGATTGAAGATGAATAGATTGGAAGTT | 57.309 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
653 | 695 | 0.247854 | GAGCAATTTCGCCGCTCTTC | 60.248 | 55.000 | 7.32 | 0.00 | 46.86 | 2.87 |
658 | 700 | 0.997196 | ATTTCGCCGCTCTTCGTTAC | 59.003 | 50.000 | 0.00 | 0.00 | 36.19 | 2.50 |
1760 | 5280 | 1.968493 | ACTCACCACGCTTTCCTTCTA | 59.032 | 47.619 | 0.00 | 0.00 | 0.00 | 2.10 |
2024 | 5668 | 2.830651 | AGTCATTACTCCCTCCGTCT | 57.169 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
2038 | 5682 | 4.322801 | CCCTCCGTCTCAAAATAAGTGTCT | 60.323 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
2039 | 5683 | 4.627467 | CCTCCGTCTCAAAATAAGTGTCTG | 59.373 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
2040 | 5684 | 4.566004 | TCCGTCTCAAAATAAGTGTCTGG | 58.434 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
2041 | 5685 | 4.282449 | TCCGTCTCAAAATAAGTGTCTGGA | 59.718 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
2042 | 5686 | 5.046591 | TCCGTCTCAAAATAAGTGTCTGGAT | 60.047 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2045 | 5689 | 7.333423 | CCGTCTCAAAATAAGTGTCTGGATTTA | 59.667 | 37.037 | 0.00 | 0.00 | 0.00 | 1.40 |
2072 | 5728 | 4.759516 | AAATCGGCGACACTTATTTTGT | 57.240 | 36.364 | 13.76 | 0.00 | 0.00 | 2.83 |
2478 | 6207 | 6.240894 | TGTTCTGAGCAGGAAACAAGAATAT | 58.759 | 36.000 | 3.20 | 0.00 | 0.00 | 1.28 |
2479 | 6208 | 7.394016 | TGTTCTGAGCAGGAAACAAGAATATA | 58.606 | 34.615 | 3.20 | 0.00 | 0.00 | 0.86 |
2607 | 6336 | 4.532834 | ACCCAACACTTCATACAACAAGT | 58.467 | 39.130 | 0.00 | 0.00 | 32.87 | 3.16 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
8 | 9 | 1.545582 | GCATATGTTGTTGGTGGCAGT | 59.454 | 47.619 | 4.29 | 0.00 | 0.00 | 4.40 |
35 | 36 | 0.114168 | ATCTCGCTATCTCCTGCCCT | 59.886 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
45 | 46 | 0.459899 | TTGCCGTCACATCTCGCTAT | 59.540 | 50.000 | 0.00 | 0.00 | 0.00 | 2.97 |
60 | 61 | 3.472726 | CCCCATGCCACCATTGCC | 61.473 | 66.667 | 0.00 | 0.00 | 0.00 | 4.52 |
174 | 180 | 6.707440 | TTGGGTGCATAAATGAATATTCGT | 57.293 | 33.333 | 10.80 | 7.66 | 0.00 | 3.85 |
305 | 313 | 2.094894 | CAGATGTCCGAATGCACTGAAC | 59.905 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
334 | 342 | 3.131223 | TGGACCGATTTTGTTTTGCTGAA | 59.869 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
375 | 383 | 5.612725 | AATCAGGGTGTGTGTGAATTTTT | 57.387 | 34.783 | 0.00 | 0.00 | 0.00 | 1.94 |
376 | 384 | 5.612725 | AAATCAGGGTGTGTGTGAATTTT | 57.387 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
377 | 385 | 5.612725 | AAAATCAGGGTGTGTGTGAATTT | 57.387 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
378 | 386 | 5.104982 | ACAAAAATCAGGGTGTGTGTGAATT | 60.105 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
379 | 387 | 4.405358 | ACAAAAATCAGGGTGTGTGTGAAT | 59.595 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
401 | 419 | 5.293079 | GGACATCTGAATAGCTCTCAACAAC | 59.707 | 44.000 | 0.00 | 0.00 | 0.00 | 3.32 |
405 | 423 | 5.668471 | CTTGGACATCTGAATAGCTCTCAA | 58.332 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
419 | 437 | 1.089920 | ATTCAGCGTGCTTGGACATC | 58.910 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
428 | 446 | 0.589729 | CGTGCCAATATTCAGCGTGC | 60.590 | 55.000 | 3.25 | 0.00 | 0.00 | 5.34 |
504 | 545 | 1.002544 | AGGCTCCTGTCTGTAAACAGC | 59.997 | 52.381 | 5.21 | 2.04 | 44.34 | 4.40 |
534 | 576 | 9.669353 | CAGAAATAAAAATTACATCCAGATCCG | 57.331 | 33.333 | 0.00 | 0.00 | 0.00 | 4.18 |
535 | 577 | 9.971922 | CCAGAAATAAAAATTACATCCAGATCC | 57.028 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
538 | 580 | 9.308000 | ACACCAGAAATAAAAATTACATCCAGA | 57.692 | 29.630 | 0.00 | 0.00 | 0.00 | 3.86 |
539 | 581 | 9.927668 | AACACCAGAAATAAAAATTACATCCAG | 57.072 | 29.630 | 0.00 | 0.00 | 0.00 | 3.86 |
540 | 582 | 9.921637 | GAACACCAGAAATAAAAATTACATCCA | 57.078 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
541 | 583 | 9.072294 | CGAACACCAGAAATAAAAATTACATCC | 57.928 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
542 | 584 | 9.620660 | ACGAACACCAGAAATAAAAATTACATC | 57.379 | 29.630 | 0.00 | 0.00 | 0.00 | 3.06 |
543 | 585 | 9.974980 | AACGAACACCAGAAATAAAAATTACAT | 57.025 | 25.926 | 0.00 | 0.00 | 0.00 | 2.29 |
544 | 586 | 9.239002 | CAACGAACACCAGAAATAAAAATTACA | 57.761 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
545 | 587 | 9.240159 | ACAACGAACACCAGAAATAAAAATTAC | 57.760 | 29.630 | 0.00 | 0.00 | 0.00 | 1.89 |
547 | 589 | 9.240159 | GTACAACGAACACCAGAAATAAAAATT | 57.760 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
548 | 590 | 8.626526 | AGTACAACGAACACCAGAAATAAAAAT | 58.373 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
549 | 591 | 7.987649 | AGTACAACGAACACCAGAAATAAAAA | 58.012 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
550 | 592 | 7.556733 | AGTACAACGAACACCAGAAATAAAA | 57.443 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
551 | 593 | 8.836268 | ATAGTACAACGAACACCAGAAATAAA | 57.164 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
552 | 594 | 8.089597 | TGATAGTACAACGAACACCAGAAATAA | 58.910 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
553 | 595 | 7.604549 | TGATAGTACAACGAACACCAGAAATA | 58.395 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
554 | 596 | 6.460781 | TGATAGTACAACGAACACCAGAAAT | 58.539 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
555 | 597 | 5.845103 | TGATAGTACAACGAACACCAGAAA | 58.155 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
556 | 598 | 5.456548 | TGATAGTACAACGAACACCAGAA | 57.543 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
557 | 599 | 5.184287 | TCATGATAGTACAACGAACACCAGA | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 3.86 |
558 | 600 | 5.407502 | TCATGATAGTACAACGAACACCAG | 58.592 | 41.667 | 0.00 | 0.00 | 0.00 | 4.00 |
559 | 601 | 5.394224 | TCATGATAGTACAACGAACACCA | 57.606 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
560 | 602 | 6.533723 | TCAATCATGATAGTACAACGAACACC | 59.466 | 38.462 | 9.04 | 0.00 | 0.00 | 4.16 |
561 | 603 | 7.520119 | TCAATCATGATAGTACAACGAACAC | 57.480 | 36.000 | 9.04 | 0.00 | 0.00 | 3.32 |
562 | 604 | 8.032451 | TCTTCAATCATGATAGTACAACGAACA | 58.968 | 33.333 | 9.04 | 0.00 | 34.96 | 3.18 |
563 | 605 | 8.407457 | TCTTCAATCATGATAGTACAACGAAC | 57.593 | 34.615 | 9.04 | 0.00 | 34.96 | 3.95 |
564 | 606 | 9.034544 | CATCTTCAATCATGATAGTACAACGAA | 57.965 | 33.333 | 9.04 | 2.03 | 34.96 | 3.85 |
565 | 607 | 8.413229 | TCATCTTCAATCATGATAGTACAACGA | 58.587 | 33.333 | 9.04 | 0.00 | 34.96 | 3.85 |
566 | 608 | 8.579682 | TCATCTTCAATCATGATAGTACAACG | 57.420 | 34.615 | 9.04 | 0.00 | 34.96 | 4.10 |
576 | 618 | 9.856162 | TTCCAATCTATTCATCTTCAATCATGA | 57.144 | 29.630 | 0.00 | 0.00 | 0.00 | 3.07 |
578 | 620 | 9.863650 | ACTTCCAATCTATTCATCTTCAATCAT | 57.136 | 29.630 | 0.00 | 0.00 | 0.00 | 2.45 |
579 | 621 | 9.690913 | AACTTCCAATCTATTCATCTTCAATCA | 57.309 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
632 | 674 | 2.045926 | AGCGGCGAAATTGCTCCT | 60.046 | 55.556 | 12.98 | 0.00 | 32.44 | 3.69 |
653 | 695 | 7.797819 | AGCAGATCTTAAGAAAAACAGTAACG | 58.202 | 34.615 | 9.71 | 0.00 | 0.00 | 3.18 |
658 | 700 | 8.862550 | AACAAAGCAGATCTTAAGAAAAACAG | 57.137 | 30.769 | 9.71 | 0.68 | 33.88 | 3.16 |
852 | 4064 | 4.049546 | TCATACGTAGCGTAAAGGCAAT | 57.950 | 40.909 | 0.08 | 0.00 | 45.39 | 3.56 |
859 | 4071 | 7.990541 | ATTTGTACAATCATACGTAGCGTAA | 57.009 | 32.000 | 9.56 | 0.00 | 45.39 | 3.18 |
1447 | 4965 | 1.736032 | GCGTAGGAACAGCAACTCGAT | 60.736 | 52.381 | 0.00 | 0.00 | 0.00 | 3.59 |
1760 | 5280 | 6.376581 | ACAGTAAGTAGTACCAAGTAAGCGAT | 59.623 | 38.462 | 0.00 | 0.00 | 32.58 | 4.58 |
2038 | 5682 | 6.201425 | GTGTCGCCGATTTAGTATTAAATCCA | 59.799 | 38.462 | 19.41 | 11.47 | 46.51 | 3.41 |
2039 | 5683 | 6.423001 | AGTGTCGCCGATTTAGTATTAAATCC | 59.577 | 38.462 | 19.41 | 9.63 | 46.51 | 3.01 |
2040 | 5684 | 7.404139 | AGTGTCGCCGATTTAGTATTAAATC | 57.596 | 36.000 | 16.74 | 16.74 | 46.08 | 2.17 |
2041 | 5685 | 7.781548 | AAGTGTCGCCGATTTAGTATTAAAT | 57.218 | 32.000 | 3.09 | 3.09 | 41.12 | 1.40 |
2042 | 5686 | 8.876275 | ATAAGTGTCGCCGATTTAGTATTAAA | 57.124 | 30.769 | 0.00 | 0.00 | 33.54 | 1.52 |
2045 | 5689 | 7.781548 | AAATAAGTGTCGCCGATTTAGTATT | 57.218 | 32.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2056 | 5712 | 2.412325 | CCGTCACAAAATAAGTGTCGCC | 60.412 | 50.000 | 7.29 | 0.00 | 43.59 | 5.54 |
2058 | 5714 | 3.122948 | CCTCCGTCACAAAATAAGTGTCG | 59.877 | 47.826 | 0.00 | 0.00 | 44.19 | 4.35 |
2072 | 5728 | 0.612174 | CAAGGACTCTCCCTCCGTCA | 60.612 | 60.000 | 0.00 | 0.00 | 37.19 | 4.35 |
2127 | 5785 | 1.199789 | GAGCCATCGTGCAAAACATCA | 59.800 | 47.619 | 0.00 | 0.00 | 0.00 | 3.07 |
2479 | 6208 | 9.672673 | GATTGTGCATCAGGGTTATAAGTATAT | 57.327 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
2607 | 6336 | 5.066375 | CAGAACTCAAAGTGATTGGTGTGAA | 59.934 | 40.000 | 0.00 | 0.00 | 39.62 | 3.18 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.