Multiple sequence alignment - TraesCS2D01G214900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G214900 chr2D 100.000 8715 0 0 1 8715 176525238 176516524 0.000000e+00 16094.0
1 TraesCS2D01G214900 chr2D 95.935 123 3 2 7105 7227 593429578 593429698 1.920000e-46 198.0
2 TraesCS2D01G214900 chr2D 95.868 121 3 2 7118 7237 651414190 651414309 2.480000e-45 195.0
3 TraesCS2D01G214900 chr2D 95.918 49 2 0 5243 5291 647157632 647157584 7.250000e-11 80.5
4 TraesCS2D01G214900 chr2A 95.567 2865 73 23 515 3369 189035840 189033020 0.000000e+00 4538.0
5 TraesCS2D01G214900 chr2A 98.242 2389 29 9 3365 5750 189023375 189020997 0.000000e+00 4167.0
6 TraesCS2D01G214900 chr2A 97.073 854 21 3 5749 6602 189020838 189019989 0.000000e+00 1435.0
7 TraesCS2D01G214900 chr2A 97.104 518 12 2 6604 7121 189019956 189019442 0.000000e+00 870.0
8 TraesCS2D01G214900 chr2A 97.605 501 11 1 7272 7772 189019430 189018931 0.000000e+00 857.0
9 TraesCS2D01G214900 chr2A 93.671 474 22 6 7791 8263 189018806 189018340 0.000000e+00 702.0
10 TraesCS2D01G214900 chr2A 93.645 299 19 0 3 301 189038038 189037740 1.730000e-121 448.0
11 TraesCS2D01G214900 chr2A 93.151 292 19 1 8406 8696 189014961 189014670 2.250000e-115 427.0
12 TraesCS2D01G214900 chr2A 83.121 314 47 4 8406 8715 569199722 569200033 1.850000e-71 281.0
13 TraesCS2D01G214900 chr2A 92.763 152 10 1 300 450 768200695 768200846 1.470000e-52 219.0
14 TraesCS2D01G214900 chr2A 92.208 154 11 1 8255 8407 189015352 189015199 5.300000e-52 217.0
15 TraesCS2D01G214900 chr2B 96.456 2483 79 7 961 3438 233554470 233551992 0.000000e+00 4089.0
16 TraesCS2D01G214900 chr2B 97.487 1870 35 5 3423 5283 233551842 233549976 0.000000e+00 3182.0
17 TraesCS2D01G214900 chr2B 95.148 1319 41 9 5291 6602 233549939 233548637 0.000000e+00 2060.0
18 TraesCS2D01G214900 chr2B 98.524 542 6 1 7226 7767 233546714 233546175 0.000000e+00 955.0
19 TraesCS2D01G214900 chr2B 96.516 488 12 4 6604 7090 233548604 233548121 0.000000e+00 802.0
20 TraesCS2D01G214900 chr2B 95.161 124 3 3 7114 7235 176698104 176697982 8.930000e-45 193.0
21 TraesCS2D01G214900 chr2B 95.062 81 2 2 7840 7920 233546066 233545988 9.180000e-25 126.0
22 TraesCS2D01G214900 chr2B 95.918 49 0 1 7077 7123 233546760 233546712 2.610000e-10 78.7
23 TraesCS2D01G214900 chr1A 82.860 1091 135 28 3334 4399 516766071 516765008 0.000000e+00 931.0
24 TraesCS2D01G214900 chr1A 93.093 333 20 2 4470 4800 516764370 516764039 1.320000e-132 484.0
25 TraesCS2D01G214900 chr1A 85.776 232 32 1 5319 5549 557178016 557177785 2.430000e-60 244.0
26 TraesCS2D01G214900 chr1A 91.270 126 7 4 5119 5242 516764038 516763915 1.500000e-37 169.0
27 TraesCS2D01G214900 chr1A 85.246 122 15 2 3217 3336 516766248 516766128 1.190000e-23 122.0
28 TraesCS2D01G214900 chr1A 90.789 76 7 0 4399 4474 516764680 516764605 1.550000e-17 102.0
29 TraesCS2D01G214900 chr1A 80.488 123 17 7 2024 2145 393465135 393465019 4.330000e-13 87.9
30 TraesCS2D01G214900 chr1A 100.000 29 0 0 3936 3964 516765562 516765534 4.000000e-03 54.7
31 TraesCS2D01G214900 chr1B 82.595 655 79 22 5752 6385 568508351 568507711 5.950000e-151 545.0
32 TraesCS2D01G214900 chr1B 84.818 303 39 6 8420 8715 266920461 266920159 1.840000e-76 298.0
33 TraesCS2D01G214900 chr1B 93.243 148 9 1 302 448 657167797 657167650 5.300000e-52 217.0
34 TraesCS2D01G214900 chr1D 84.530 362 50 4 5319 5675 464872766 464872406 3.870000e-93 353.0
35 TraesCS2D01G214900 chr1D 84.175 297 42 4 8423 8715 218902434 218902139 5.150000e-72 283.0
36 TraesCS2D01G214900 chr1D 84.979 233 22 5 706 938 217302791 217302572 3.170000e-54 224.0
37 TraesCS2D01G214900 chr1D 95.745 47 2 0 5243 5289 338832304 338832350 9.380000e-10 76.8
38 TraesCS2D01G214900 chr1D 95.745 47 2 0 5243 5289 386898100 386898054 9.380000e-10 76.8
39 TraesCS2D01G214900 chr1D 97.619 42 1 0 5242 5283 476590610 476590569 1.210000e-08 73.1
40 TraesCS2D01G214900 chr1D 97.561 41 1 0 5236 5276 462987512 462987552 4.360000e-08 71.3
41 TraesCS2D01G214900 chr5B 83.333 378 50 6 5317 5690 458667632 458668000 3.900000e-88 337.0
42 TraesCS2D01G214900 chr5B 83.810 315 44 6 8406 8713 474782106 474781792 8.560000e-75 292.0
43 TraesCS2D01G214900 chr5B 83.178 321 51 3 5374 5692 506198297 506197978 3.080000e-74 291.0
44 TraesCS2D01G214900 chr5B 86.831 243 26 4 698 938 81480122 81480360 5.190000e-67 267.0
45 TraesCS2D01G214900 chr5B 97.826 46 1 0 5243 5288 547634104 547634059 7.250000e-11 80.5
46 TraesCS2D01G214900 chr5B 77.083 144 26 2 7975 8112 355611589 355611447 9.380000e-10 76.8
47 TraesCS2D01G214900 chr5B 87.879 66 5 3 5225 5289 121210089 121210152 3.370000e-09 75.0
48 TraesCS2D01G214900 chr5D 85.093 322 45 3 5374 5693 418539940 418539620 8.440000e-85 326.0
49 TraesCS2D01G214900 chr5D 84.333 300 43 3 8420 8715 152753398 152753099 3.080000e-74 291.0
50 TraesCS2D01G214900 chr5D 83.544 316 46 4 8406 8715 522048058 522047743 3.080000e-74 291.0
51 TraesCS2D01G214900 chr5D 87.243 243 25 4 698 938 72504516 72504278 1.110000e-68 272.0
52 TraesCS2D01G214900 chr5D 95.745 47 2 0 5243 5289 480502614 480502660 9.380000e-10 76.8
53 TraesCS2D01G214900 chr6D 81.102 381 66 4 5319 5697 333814986 333814610 5.110000e-77 300.0
54 TraesCS2D01G214900 chr6D 84.407 295 44 2 8423 8715 396923334 396923040 1.110000e-73 289.0
55 TraesCS2D01G214900 chr6D 97.479 119 2 1 7120 7238 397359815 397359932 1.480000e-47 202.0
56 TraesCS2D01G214900 chr6D 93.130 131 5 4 7121 7248 405193921 405193792 1.150000e-43 189.0
57 TraesCS2D01G214900 chr6D 97.872 47 1 0 5243 5289 28335034 28334988 2.020000e-11 82.4
58 TraesCS2D01G214900 chr6D 95.745 47 2 0 5243 5289 100537097 100537051 9.380000e-10 76.8
59 TraesCS2D01G214900 chr6D 95.833 48 1 1 5243 5289 382350161 382350208 9.380000e-10 76.8
60 TraesCS2D01G214900 chr6D 97.561 41 1 0 5243 5283 15347944 15347984 4.360000e-08 71.3
61 TraesCS2D01G214900 chr6D 97.561 41 1 0 5243 5283 151944577 151944537 4.360000e-08 71.3
62 TraesCS2D01G214900 chr6B 83.175 315 48 4 8406 8715 68109587 68109901 5.150000e-72 283.0
63 TraesCS2D01G214900 chr6B 92.715 151 10 1 301 450 140097881 140098031 5.300000e-52 217.0
64 TraesCS2D01G214900 chr6B 92.208 154 10 2 302 453 663017838 663017991 5.300000e-52 217.0
65 TraesCS2D01G214900 chr6B 92.667 150 10 1 302 450 413647409 413647558 1.910000e-51 215.0
66 TraesCS2D01G214900 chr6B 80.233 258 32 11 5437 5690 652632012 652632254 8.990000e-40 176.0
67 TraesCS2D01G214900 chr6B 97.872 47 1 0 5243 5289 571723335 571723381 2.020000e-11 82.4
68 TraesCS2D01G214900 chr3A 80.418 383 48 17 5319 5694 553003003 553002641 5.190000e-67 267.0
69 TraesCS2D01G214900 chr3B 90.116 172 15 2 766 936 140995765 140995595 1.140000e-53 222.0
70 TraesCS2D01G214900 chr3B 97.872 47 1 0 5243 5289 109876045 109875999 2.020000e-11 82.4
71 TraesCS2D01G214900 chr3B 92.593 54 4 0 5236 5289 819299859 819299912 2.610000e-10 78.7
72 TraesCS2D01G214900 chr4B 92.810 153 10 1 299 450 568662144 568662296 4.100000e-53 220.0
73 TraesCS2D01G214900 chr4B 90.196 51 5 0 5240 5290 426108921 426108971 5.650000e-07 67.6
74 TraesCS2D01G214900 chr5A 92.667 150 10 1 302 450 26117491 26117342 1.910000e-51 215.0
75 TraesCS2D01G214900 chr4A 91.139 158 13 1 300 456 715356621 715356464 6.850000e-51 213.0
76 TraesCS2D01G214900 chr4D 90.244 164 11 4 289 450 447293822 447293662 8.870000e-50 209.0
77 TraesCS2D01G214900 chr7D 97.500 120 0 3 7121 7239 382742643 382742526 1.480000e-47 202.0
78 TraesCS2D01G214900 chrUn 95.122 123 4 2 7105 7227 24771601 24771721 8.930000e-45 193.0
79 TraesCS2D01G214900 chrUn 95.122 123 4 2 7105 7227 317331143 317331263 8.930000e-45 193.0
80 TraesCS2D01G214900 chrUn 94.444 126 5 2 7105 7230 349067507 349067384 8.930000e-45 193.0
81 TraesCS2D01G214900 chrUn 95.238 42 1 1 5243 5284 19741284 19741244 2.030000e-06 65.8
82 TraesCS2D01G214900 chrUn 95.122 41 2 0 5241 5281 195613904 195613864 2.030000e-06 65.8
83 TraesCS2D01G214900 chr7B 97.917 48 1 0 5243 5290 738855732 738855779 5.610000e-12 84.2
84 TraesCS2D01G214900 chr7B 95.833 48 2 0 5242 5289 153696185 153696138 2.610000e-10 78.7
85 TraesCS2D01G214900 chr3D 94.444 54 3 0 5236 5289 607079120 607079173 5.610000e-12 84.2
86 TraesCS2D01G214900 chr3D 94.231 52 2 1 5238 5289 43577932 43577882 2.610000e-10 78.7
87 TraesCS2D01G214900 chr6A 95.745 47 2 0 5243 5289 32744729 32744683 9.380000e-10 76.8
88 TraesCS2D01G214900 chr6A 91.837 49 1 3 5235 5283 89972592 89972637 2.030000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G214900 chr2D 176516524 176525238 8714 True 16094.000000 16094 100.000000 1 8715 1 chr2D.!!$R1 8714
1 TraesCS2D01G214900 chr2A 189033020 189038038 5018 True 2493.000000 4538 94.606000 3 3369 2 chr2A.!!$R2 3366
2 TraesCS2D01G214900 chr2A 189014670 189023375 8705 True 1239.285714 4167 95.579143 3365 8696 7 chr2A.!!$R1 5331
3 TraesCS2D01G214900 chr2B 233545988 233554470 8482 True 1613.242857 4089 96.444429 961 7920 7 chr2B.!!$R2 6959
4 TraesCS2D01G214900 chr1A 516763915 516766248 2333 True 310.450000 931 90.543000 3217 5242 6 chr1A.!!$R3 2025
5 TraesCS2D01G214900 chr1B 568507711 568508351 640 True 545.000000 545 82.595000 5752 6385 1 chr1B.!!$R2 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 2718 0.171903 GGTCAGTACATACGGTGCGT 59.828 55.000 0.00 0.0 44.35 5.24 F
1016 2871 0.179000 GACATGGCTCCCAACGAGAT 59.821 55.000 0.00 0.0 41.63 2.75 F
2302 4161 0.405198 TGGCCATTGTCATCACCTGT 59.595 50.000 0.00 0.0 0.00 4.00 F
2820 4683 0.734889 GCGTGTTGCTATGATTGCCT 59.265 50.000 0.00 0.0 41.73 4.75 F
3620 5720 0.384669 GTTACCGAGATAGGTGCGCT 59.615 55.000 9.73 0.0 45.54 5.92 F
4587 7303 6.089417 GGCAGTTGTATGTTTGCAGAAATTAC 59.911 38.462 0.00 0.0 38.27 1.89 F
6004 8936 1.001974 TGCCACAATCGCTAGTTGACT 59.998 47.619 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2779 4642 1.081174 TGAGAGGGAGAGGGGTTTGAT 59.919 52.381 0.00 0.0 0.00 2.57 R
2792 4655 3.257933 GCAACACGCTTGAGAGGG 58.742 61.111 0.00 0.0 41.32 4.30 R
3388 5312 1.891919 GCAACAGGTCAACGGCTCA 60.892 57.895 0.00 0.0 0.00 4.26 R
4587 7303 2.980246 AGAAGGGAAGGGTGGAAAAG 57.020 50.000 0.00 0.0 0.00 2.27 R
5278 8008 3.010920 TGCCACTCCCTTCTAGTGTAGTA 59.989 47.826 0.00 0.0 42.30 1.82 R
6037 8969 2.064434 TGGCACAAAGGACAACATCA 57.936 45.000 0.00 0.0 31.92 3.07 R
7881 12350 0.460109 CCGATCATGTTCACCGCAGA 60.460 55.000 4.71 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.398595 CGTAAACGAAACCGACGACT 58.601 50.000 0.00 0.00 43.02 4.18
30 31 2.570169 CGTAAACGAAACCGACGACTA 58.430 47.619 0.00 0.00 43.02 2.59
34 35 5.282778 CGTAAACGAAACCGACGACTAATTA 59.717 40.000 0.00 0.00 43.02 1.40
40 41 2.027385 ACCGACGACTAATTAGGGGTC 58.973 52.381 16.73 18.71 0.00 4.46
41 42 2.026641 CCGACGACTAATTAGGGGTCA 58.973 52.381 25.21 0.00 32.58 4.02
72 73 2.425592 CACAGCTGACGGTCCCAA 59.574 61.111 23.35 0.00 0.00 4.12
90 91 6.206498 GTCCCAATTAGCATTTCCGTTATTC 58.794 40.000 0.00 0.00 0.00 1.75
156 157 9.206870 TGAAAAACTCTGCCAAAATGATAAATC 57.793 29.630 0.00 0.00 0.00 2.17
163 164 8.627208 TCTGCCAAAATGATAAATCTATCTCC 57.373 34.615 0.00 0.00 35.79 3.71
185 186 0.172578 CCCGCCTTATCGATCGCATA 59.827 55.000 11.09 6.70 0.00 3.14
207 208 8.231837 GCATAATTCGTGTAACCTGAAACTAAA 58.768 33.333 0.00 0.00 0.00 1.85
217 218 3.343617 CCTGAAACTAAATTCGGGCTGA 58.656 45.455 2.20 0.00 46.06 4.26
230 231 1.228552 GGCTGAGCAACCCCTTTCA 60.229 57.895 6.82 0.00 0.00 2.69
235 236 3.463045 AGCAACCCCTTTCAATGCT 57.537 47.368 0.00 0.00 42.19 3.79
263 264 1.460273 TTTCCTTTTGTCGCCAGCCC 61.460 55.000 0.00 0.00 0.00 5.19
301 302 5.066505 AGCCCTCTGTAATTATTTTTCTGCG 59.933 40.000 0.00 0.00 0.00 5.18
302 303 5.065988 GCCCTCTGTAATTATTTTTCTGCGA 59.934 40.000 0.00 0.00 0.00 5.10
303 304 6.719365 CCCTCTGTAATTATTTTTCTGCGAG 58.281 40.000 0.00 0.00 0.00 5.03
304 305 6.238484 CCCTCTGTAATTATTTTTCTGCGAGG 60.238 42.308 0.00 0.00 34.44 4.63
305 306 6.538742 CCTCTGTAATTATTTTTCTGCGAGGA 59.461 38.462 0.00 0.00 36.20 3.71
306 307 7.227512 CCTCTGTAATTATTTTTCTGCGAGGAT 59.772 37.037 0.00 0.00 36.20 3.24
307 308 7.919690 TCTGTAATTATTTTTCTGCGAGGATG 58.080 34.615 0.00 0.00 0.00 3.51
308 309 7.012327 TCTGTAATTATTTTTCTGCGAGGATGG 59.988 37.037 0.00 0.00 0.00 3.51
309 310 5.520376 AATTATTTTTCTGCGAGGATGGG 57.480 39.130 0.00 0.00 0.00 4.00
310 311 1.767759 ATTTTTCTGCGAGGATGGGG 58.232 50.000 0.00 0.00 0.00 4.96
311 312 0.965363 TTTTTCTGCGAGGATGGGGC 60.965 55.000 0.00 0.00 0.00 5.80
312 313 3.680620 TTTCTGCGAGGATGGGGCG 62.681 63.158 0.00 0.00 0.00 6.13
314 315 4.899239 CTGCGAGGATGGGGCGTC 62.899 72.222 0.00 0.00 0.00 5.19
317 318 4.570663 CGAGGATGGGGCGTCGAC 62.571 72.222 5.18 5.18 45.81 4.20
318 319 4.222847 GAGGATGGGGCGTCGACC 62.223 72.222 9.26 9.26 0.00 4.79
342 343 3.595819 CTGGGCAGCTAAGGTTGC 58.404 61.111 0.00 0.00 46.58 4.17
343 344 1.001641 CTGGGCAGCTAAGGTTGCT 60.002 57.895 5.01 0.00 46.51 3.91
348 349 4.730487 AGCTAAGGTTGCTGCCAG 57.270 55.556 0.00 0.00 39.56 4.85
349 350 1.676967 AGCTAAGGTTGCTGCCAGC 60.677 57.895 10.45 10.45 42.82 4.85
350 351 2.704808 GCTAAGGTTGCTGCCAGCC 61.705 63.158 15.29 0.00 41.51 4.85
351 352 2.035626 TAAGGTTGCTGCCAGCCC 59.964 61.111 15.29 9.16 42.79 5.19
352 353 2.769652 CTAAGGTTGCTGCCAGCCCA 62.770 60.000 15.29 0.00 42.79 5.36
353 354 4.982701 AGGTTGCTGCCAGCCCAC 62.983 66.667 15.29 10.81 42.79 4.61
362 363 4.760047 CCAGCCCACCCGAGTTCG 62.760 72.222 0.00 0.00 39.44 3.95
363 364 3.691342 CAGCCCACCCGAGTTCGA 61.691 66.667 2.59 0.00 43.02 3.71
364 365 3.382832 AGCCCACCCGAGTTCGAG 61.383 66.667 2.59 0.00 43.02 4.04
365 366 3.692406 GCCCACCCGAGTTCGAGT 61.692 66.667 2.59 0.00 43.02 4.18
366 367 2.572284 CCCACCCGAGTTCGAGTC 59.428 66.667 2.59 0.00 43.02 3.36
367 368 2.572284 CCACCCGAGTTCGAGTCC 59.428 66.667 2.59 0.00 43.02 3.85
368 369 2.572284 CACCCGAGTTCGAGTCCC 59.428 66.667 2.59 0.00 43.02 4.46
369 370 3.060615 ACCCGAGTTCGAGTCCCG 61.061 66.667 2.59 0.00 43.02 5.14
370 371 3.823330 CCCGAGTTCGAGTCCCGG 61.823 72.222 2.59 0.00 43.02 5.73
371 372 4.493747 CCGAGTTCGAGTCCCGGC 62.494 72.222 0.00 0.00 43.02 6.13
372 373 3.441290 CGAGTTCGAGTCCCGGCT 61.441 66.667 0.00 0.00 43.02 5.52
373 374 2.490685 GAGTTCGAGTCCCGGCTC 59.509 66.667 0.00 0.00 39.14 4.70
387 388 4.664677 GCTCGGACACGTGGTGCT 62.665 66.667 21.57 0.00 41.85 4.40
388 389 2.430921 CTCGGACACGTGGTGCTC 60.431 66.667 21.57 7.97 41.85 4.26
389 390 4.337060 TCGGACACGTGGTGCTCG 62.337 66.667 21.57 14.84 41.85 5.03
397 398 2.665185 GTGGTGCTCGCGGAGTTT 60.665 61.111 6.13 0.00 31.39 2.66
398 399 2.357034 TGGTGCTCGCGGAGTTTC 60.357 61.111 6.13 0.00 31.39 2.78
399 400 2.048127 GGTGCTCGCGGAGTTTCT 60.048 61.111 6.13 0.00 31.39 2.52
400 401 2.095252 GGTGCTCGCGGAGTTTCTC 61.095 63.158 6.13 0.00 31.39 2.87
401 402 2.095252 GTGCTCGCGGAGTTTCTCC 61.095 63.158 6.13 5.79 46.44 3.71
426 427 3.934457 AAAAATGGCAACGAGGGTTAG 57.066 42.857 0.00 0.00 42.51 2.34
427 428 1.173913 AAATGGCAACGAGGGTTAGC 58.826 50.000 0.00 0.00 42.51 3.09
428 429 0.679960 AATGGCAACGAGGGTTAGCC 60.680 55.000 0.00 11.11 44.04 3.93
441 442 3.636153 GGTTAGCCCTTGAGTTGATCT 57.364 47.619 0.00 0.00 0.00 2.75
442 443 3.956744 GGTTAGCCCTTGAGTTGATCTT 58.043 45.455 0.00 0.00 0.00 2.40
443 444 5.099042 GGTTAGCCCTTGAGTTGATCTTA 57.901 43.478 0.00 0.00 0.00 2.10
444 445 5.685728 GGTTAGCCCTTGAGTTGATCTTAT 58.314 41.667 0.00 0.00 0.00 1.73
445 446 6.122964 GGTTAGCCCTTGAGTTGATCTTATT 58.877 40.000 0.00 0.00 0.00 1.40
446 447 6.603599 GGTTAGCCCTTGAGTTGATCTTATTT 59.396 38.462 0.00 0.00 0.00 1.40
447 448 7.122799 GGTTAGCCCTTGAGTTGATCTTATTTT 59.877 37.037 0.00 0.00 0.00 1.82
448 449 8.523658 GTTAGCCCTTGAGTTGATCTTATTTTT 58.476 33.333 0.00 0.00 0.00 1.94
560 2409 3.127533 CTTCTTTCCCGGCGGCAG 61.128 66.667 23.20 15.80 0.00 4.85
561 2410 3.901797 CTTCTTTCCCGGCGGCAGT 62.902 63.158 23.20 0.00 0.00 4.40
562 2411 4.697756 TCTTTCCCGGCGGCAGTG 62.698 66.667 23.20 7.05 0.00 3.66
573 2422 3.726517 GGCAGTGCGCACATCGTT 61.727 61.111 39.21 18.32 45.17 3.85
574 2423 2.387445 GGCAGTGCGCACATCGTTA 61.387 57.895 39.21 0.00 45.17 3.18
575 2424 1.225745 GCAGTGCGCACATCGTTAC 60.226 57.895 39.21 17.53 41.79 2.50
576 2425 1.896339 GCAGTGCGCACATCGTTACA 61.896 55.000 39.21 0.00 41.79 2.41
577 2426 0.721154 CAGTGCGCACATCGTTACAT 59.279 50.000 39.21 15.19 41.07 2.29
578 2427 0.999406 AGTGCGCACATCGTTACATC 59.001 50.000 39.21 10.74 41.07 3.06
579 2428 0.718904 GTGCGCACATCGTTACATCA 59.281 50.000 34.52 0.00 41.07 3.07
580 2429 1.127766 GTGCGCACATCGTTACATCAA 59.872 47.619 34.52 0.00 41.07 2.57
581 2430 1.393196 TGCGCACATCGTTACATCAAG 59.607 47.619 5.66 0.00 41.07 3.02
582 2431 1.267532 GCGCACATCGTTACATCAAGG 60.268 52.381 0.30 0.00 41.07 3.61
591 2440 1.141053 GTTACATCAAGGGAGCCGGAT 59.859 52.381 5.05 0.00 0.00 4.18
592 2441 1.048601 TACATCAAGGGAGCCGGATC 58.951 55.000 12.38 12.38 0.00 3.36
601 2450 1.070914 GGGAGCCGGATCCTCTAAAAG 59.929 57.143 36.03 0.00 39.50 2.27
796 2651 2.181021 GCGTCCTCCAATCGTCGT 59.819 61.111 0.00 0.00 0.00 4.34
803 2658 3.186047 CCAATCGTCGTCGGCACC 61.186 66.667 1.55 0.00 37.69 5.01
856 2711 2.361119 TCCATCGCAGGTCAGTACATAC 59.639 50.000 0.00 0.00 0.00 2.39
863 2718 0.171903 GGTCAGTACATACGGTGCGT 59.828 55.000 0.00 0.00 44.35 5.24
877 2732 2.792196 CGGTGCGTGGATCAAATGAATG 60.792 50.000 0.00 0.00 0.00 2.67
954 2809 3.627395 TTCCTGCATCTACGAACCAAT 57.373 42.857 0.00 0.00 0.00 3.16
958 2813 4.038042 TCCTGCATCTACGAACCAATAGAG 59.962 45.833 0.00 0.00 31.09 2.43
1016 2871 0.179000 GACATGGCTCCCAACGAGAT 59.821 55.000 0.00 0.00 41.63 2.75
1068 2923 0.732571 CCCATGTTGATTCCGTTCGG 59.267 55.000 4.74 4.74 0.00 4.30
1221 3076 3.197333 GGGTTCTAGTGGTTCTAGGGTTC 59.803 52.174 0.00 0.00 44.45 3.62
1261 3116 3.270027 TCTGTTTGATGCGTAGGGATTG 58.730 45.455 0.00 0.00 0.00 2.67
1520 3378 1.668751 GTCGTGGTGCTGTCTTTGAAA 59.331 47.619 0.00 0.00 0.00 2.69
1595 3454 4.020839 GGCAGTGGTTTCTGTAGTTAGGTA 60.021 45.833 0.00 0.00 37.70 3.08
1657 3516 3.500343 ACTTGGTGCAGCTCCTTTAAAT 58.500 40.909 18.08 0.00 0.00 1.40
1723 3582 6.434018 AATGAGAAGTTCAAGCATAGAAGC 57.566 37.500 5.50 0.00 39.77 3.86
1790 3649 2.427593 CCATTCTCATCCTCTCCCCTCT 60.428 54.545 0.00 0.00 0.00 3.69
1791 3650 2.468301 TTCTCATCCTCTCCCCTCTG 57.532 55.000 0.00 0.00 0.00 3.35
2006 3865 3.385755 GCCCATGATACTTTGGCTTTCAT 59.614 43.478 0.00 0.00 39.05 2.57
2201 4060 5.836024 AACATACCCCAAGTTTCACTAGA 57.164 39.130 0.00 0.00 0.00 2.43
2302 4161 0.405198 TGGCCATTGTCATCACCTGT 59.595 50.000 0.00 0.00 0.00 4.00
2584 4445 7.363268 CCCCTAATGAAAATTTCAGACTCTTGG 60.363 40.741 14.10 5.23 43.98 3.61
2680 4541 2.748465 GCCCATTCACATACCCTGTACC 60.748 54.545 0.00 0.00 35.91 3.34
2698 4559 6.294508 CCTGTACCTAACACCCTGAAAATTTG 60.295 42.308 0.00 0.00 33.45 2.32
2779 4642 3.732219 CGTCACTGTTTAGACTTTACGCA 59.268 43.478 0.00 0.00 32.68 5.24
2792 4655 2.396590 TTACGCATCAAACCCCTCTC 57.603 50.000 0.00 0.00 0.00 3.20
2820 4683 0.734889 GCGTGTTGCTATGATTGCCT 59.265 50.000 0.00 0.00 41.73 4.75
3009 4872 5.655488 CATCCTCTCCTGTTGTACTTGTAG 58.345 45.833 0.00 0.00 0.00 2.74
3085 4948 2.429971 TGCAAACAAGTTCAATGGAGCA 59.570 40.909 0.00 0.00 0.00 4.26
3388 5312 3.119849 GCCACACGATTCAATAGCTTTGT 60.120 43.478 0.00 0.00 0.00 2.83
3606 5706 7.067129 GGAGGGATTCATTGTAAAGAAGTTACC 59.933 40.741 0.00 0.00 41.35 2.85
3620 5720 0.384669 GTTACCGAGATAGGTGCGCT 59.615 55.000 9.73 0.00 45.54 5.92
4039 6187 6.239772 GGGGTATGTGCACCTACTATTGATTA 60.240 42.308 25.26 0.10 38.73 1.75
4587 7303 6.089417 GGCAGTTGTATGTTTGCAGAAATTAC 59.911 38.462 0.00 0.00 38.27 1.89
5183 7911 6.970191 AGCAGTTCCTATAAATTAACTGGGT 58.030 36.000 15.04 3.28 45.66 4.51
5250 7980 7.573710 TCTATGCACATAAATGTTACTCCCTT 58.426 34.615 0.00 0.00 39.39 3.95
5388 8147 3.927555 TTTTTCCACGCTCGAGGAT 57.072 47.368 15.58 0.00 34.97 3.24
5745 8506 4.202326 CCGGGTATGACCTGCTTTAATACT 60.202 45.833 0.00 0.00 43.40 2.12
5935 8856 2.917933 TCCCGATATGCCACTCAAAAG 58.082 47.619 0.00 0.00 0.00 2.27
5959 8880 1.463674 CTGGCTCCAAATGTACCACC 58.536 55.000 0.00 0.00 0.00 4.61
6000 8932 4.036734 CCAAATATGCCACAATCGCTAGTT 59.963 41.667 0.00 0.00 0.00 2.24
6001 8933 4.818534 AATATGCCACAATCGCTAGTTG 57.181 40.909 0.00 0.00 0.00 3.16
6002 8934 2.401583 ATGCCACAATCGCTAGTTGA 57.598 45.000 0.00 0.00 0.00 3.18
6003 8935 1.438651 TGCCACAATCGCTAGTTGAC 58.561 50.000 0.00 0.00 0.00 3.18
6004 8936 1.001974 TGCCACAATCGCTAGTTGACT 59.998 47.619 0.00 0.00 0.00 3.41
6005 8937 1.394917 GCCACAATCGCTAGTTGACTG 59.605 52.381 0.00 0.00 0.00 3.51
6006 8938 2.688507 CCACAATCGCTAGTTGACTGT 58.311 47.619 0.00 0.00 0.00 3.55
6007 8939 3.067106 CCACAATCGCTAGTTGACTGTT 58.933 45.455 0.00 0.00 0.00 3.16
6008 8940 4.242475 CCACAATCGCTAGTTGACTGTTA 58.758 43.478 0.00 0.00 0.00 2.41
6009 8941 4.327357 CCACAATCGCTAGTTGACTGTTAG 59.673 45.833 0.00 0.00 0.00 2.34
6010 8942 4.923871 CACAATCGCTAGTTGACTGTTAGT 59.076 41.667 0.00 0.00 0.00 2.24
6037 8969 3.323115 TGTGAAGTGTCTGCTGAGAAGAT 59.677 43.478 0.00 0.00 0.00 2.40
6045 8977 4.252073 GTCTGCTGAGAAGATGATGTTGT 58.748 43.478 0.00 0.00 0.00 3.32
6455 9409 5.885230 TGTCATATTTCTTTGAGCAGGTG 57.115 39.130 0.00 0.00 0.00 4.00
6476 9430 4.396790 GTGGTCTTGTTGAACCAAGTAACA 59.603 41.667 0.00 0.00 42.01 2.41
6549 9503 8.232412 AGTTCCTATCTATGTAACTATGACCCA 58.768 37.037 0.00 0.00 0.00 4.51
6598 9552 7.550196 ACAGATGCCCATGATTTTAATTGTTTC 59.450 33.333 0.00 0.00 0.00 2.78
6602 9556 8.088463 TGCCCATGATTTTAATTGTTTCCTAT 57.912 30.769 0.00 0.00 0.00 2.57
6836 9821 8.735315 ACGAAATGATCCAAATATTGTAACACA 58.265 29.630 0.00 0.00 0.00 3.72
6837 9822 9.009327 CGAAATGATCCAAATATTGTAACACAC 57.991 33.333 0.00 0.00 0.00 3.82
7134 11496 2.667473 AATGTTACTCCCTCCGTTCG 57.333 50.000 0.00 0.00 0.00 3.95
7135 11497 0.822164 ATGTTACTCCCTCCGTTCGG 59.178 55.000 4.74 4.74 0.00 4.30
7136 11498 0.251297 TGTTACTCCCTCCGTTCGGA 60.251 55.000 13.34 13.34 0.00 4.55
7137 11499 0.890683 GTTACTCCCTCCGTTCGGAA 59.109 55.000 14.79 0.04 33.41 4.30
7138 11500 1.479730 GTTACTCCCTCCGTTCGGAAT 59.520 52.381 14.79 2.09 33.41 3.01
7139 11501 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
7140 11502 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
7141 11503 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
7142 11504 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
7143 11505 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
7144 11506 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
7145 11507 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
7146 11508 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
7147 11509 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
7148 11510 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
7149 11511 3.061322 CCGTTCGGAATTACTTGTCACA 58.939 45.455 5.19 0.00 0.00 3.58
7150 11512 3.495377 CCGTTCGGAATTACTTGTCACAA 59.505 43.478 5.19 0.00 0.00 3.33
7151 11513 4.024725 CCGTTCGGAATTACTTGTCACAAA 60.025 41.667 5.19 0.00 0.00 2.83
7152 11514 5.503498 CGTTCGGAATTACTTGTCACAAAA 58.497 37.500 0.00 0.00 0.00 2.44
7153 11515 5.966503 CGTTCGGAATTACTTGTCACAAAAA 59.033 36.000 0.00 0.00 0.00 1.94
7154 11516 6.635239 CGTTCGGAATTACTTGTCACAAAAAT 59.365 34.615 0.00 0.00 0.00 1.82
7155 11517 7.357206 CGTTCGGAATTACTTGTCACAAAAATG 60.357 37.037 0.00 0.00 0.00 2.32
7156 11518 6.442952 TCGGAATTACTTGTCACAAAAATGG 58.557 36.000 0.00 0.00 0.00 3.16
7157 11519 6.263392 TCGGAATTACTTGTCACAAAAATGGA 59.737 34.615 0.00 0.00 0.00 3.41
7158 11520 7.040062 TCGGAATTACTTGTCACAAAAATGGAT 60.040 33.333 0.00 0.00 0.00 3.41
7159 11521 7.062138 CGGAATTACTTGTCACAAAAATGGATG 59.938 37.037 0.00 0.00 0.00 3.51
7160 11522 7.872483 GGAATTACTTGTCACAAAAATGGATGT 59.128 33.333 0.00 0.00 0.00 3.06
7161 11523 9.906660 GAATTACTTGTCACAAAAATGGATGTA 57.093 29.630 0.00 0.00 0.00 2.29
7164 11526 7.765695 ACTTGTCACAAAAATGGATGTATCT 57.234 32.000 0.00 0.00 0.00 1.98
7165 11527 8.862325 ACTTGTCACAAAAATGGATGTATCTA 57.138 30.769 0.00 0.00 0.00 1.98
7166 11528 8.730680 ACTTGTCACAAAAATGGATGTATCTAC 58.269 33.333 0.00 0.00 0.00 2.59
7167 11529 8.628630 TTGTCACAAAAATGGATGTATCTACA 57.371 30.769 0.00 0.00 40.98 2.74
7168 11530 8.628630 TGTCACAAAAATGGATGTATCTACAA 57.371 30.769 0.00 0.00 39.99 2.41
7169 11531 8.511321 TGTCACAAAAATGGATGTATCTACAAC 58.489 33.333 0.00 0.00 39.99 3.32
7170 11532 8.730680 GTCACAAAAATGGATGTATCTACAACT 58.269 33.333 0.00 0.00 39.99 3.16
7171 11533 9.952030 TCACAAAAATGGATGTATCTACAACTA 57.048 29.630 0.00 0.00 39.99 2.24
7202 11564 9.553064 ACATCTAGATACATTCATTTCTTGGAC 57.447 33.333 4.54 0.00 0.00 4.02
7203 11565 8.706936 CATCTAGATACATTCATTTCTTGGACG 58.293 37.037 4.54 0.00 0.00 4.79
7204 11566 8.007405 TCTAGATACATTCATTTCTTGGACGA 57.993 34.615 0.00 0.00 0.00 4.20
7205 11567 8.138074 TCTAGATACATTCATTTCTTGGACGAG 58.862 37.037 0.00 0.00 0.00 4.18
7206 11568 6.644347 AGATACATTCATTTCTTGGACGAGT 58.356 36.000 0.00 0.00 0.00 4.18
7207 11569 7.782049 AGATACATTCATTTCTTGGACGAGTA 58.218 34.615 0.00 0.00 0.00 2.59
7208 11570 8.258007 AGATACATTCATTTCTTGGACGAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
7209 11571 8.964476 ATACATTCATTTCTTGGACGAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
7210 11572 7.687941 ACATTCATTTCTTGGACGAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
7211 11573 7.752695 ACATTCATTTCTTGGACGAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
7212 11574 6.737254 TTCATTTCTTGGACGAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
7213 11575 4.868171 TCATTTCTTGGACGAGTAATTCCG 59.132 41.667 0.00 0.00 0.00 4.30
7214 11576 4.524316 TTTCTTGGACGAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
7215 11577 4.524316 TTCTTGGACGAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
7216 11578 3.841643 TCTTGGACGAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
7217 11579 2.267188 TGGACGAGTAATTCCGAACG 57.733 50.000 0.00 0.00 0.00 3.95
7218 11580 1.135315 TGGACGAGTAATTCCGAACGG 60.135 52.381 6.94 6.94 0.00 4.44
7219 11581 1.133025 GGACGAGTAATTCCGAACGGA 59.867 52.381 12.04 12.04 43.52 4.69
7220 11582 2.448219 GACGAGTAATTCCGAACGGAG 58.552 52.381 15.34 5.60 46.06 4.63
7221 11583 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
7222 11584 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
7223 11585 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
7224 11586 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
7225 11587 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
7226 11588 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
7227 11589 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
7307 11669 1.668826 AGGGGTTGGATGTTAGCTCA 58.331 50.000 0.00 0.00 0.00 4.26
7340 11702 6.545666 TCTTTTCCAAGTAGAATTGCTGACAA 59.454 34.615 0.00 0.00 40.87 3.18
7759 12121 0.039617 TCCAAAGAATTGCGCCGTTG 60.040 50.000 4.18 3.90 35.10 4.10
7798 12266 4.731773 GCCATGTGTAAGTAGCTCATTTGC 60.732 45.833 0.00 0.00 0.00 3.68
7825 12293 5.988310 TCCATTGATTCAAAGATGCACTT 57.012 34.783 2.68 0.00 40.98 3.16
7881 12350 7.142306 GTCATATGACAGCATATCTGCAATT 57.858 36.000 27.33 0.00 43.98 2.32
7950 12419 2.277084 GTAGGAATACCGTTGTGCCAG 58.723 52.381 0.00 0.00 41.83 4.85
7951 12420 0.981183 AGGAATACCGTTGTGCCAGA 59.019 50.000 0.00 0.00 41.83 3.86
7961 12430 3.555956 CCGTTGTGCCAGATGTAGTATTC 59.444 47.826 0.00 0.00 0.00 1.75
7971 12440 8.432013 TGCCAGATGTAGTATTCAGATTACAAT 58.568 33.333 5.47 0.00 30.64 2.71
7981 12450 8.443160 AGTATTCAGATTACAATGACAACAACG 58.557 33.333 5.47 0.00 0.00 4.10
7982 12451 6.852858 TTCAGATTACAATGACAACAACGA 57.147 33.333 0.00 0.00 0.00 3.85
7983 12452 6.223138 TCAGATTACAATGACAACAACGAC 57.777 37.500 0.00 0.00 0.00 4.34
7984 12453 5.755861 TCAGATTACAATGACAACAACGACA 59.244 36.000 0.00 0.00 0.00 4.35
7985 12454 6.073369 CAGATTACAATGACAACAACGACAG 58.927 40.000 0.00 0.00 0.00 3.51
8047 12516 7.991084 ACAAGATCTTGAAATCAACTCATGA 57.009 32.000 36.15 0.00 42.93 3.07
8066 12535 2.708861 TGATTATGGCCCGTGGATAGTT 59.291 45.455 0.00 0.00 0.00 2.24
8114 12583 5.299531 GGCTAGTTCTTTGGTGAAACTCTTT 59.700 40.000 0.00 0.00 36.74 2.52
8142 12612 4.816925 GCTCCTATCATGTTAGGTTTGGTC 59.183 45.833 23.37 8.77 39.87 4.02
8143 12613 5.396884 GCTCCTATCATGTTAGGTTTGGTCT 60.397 44.000 23.37 0.00 39.87 3.85
8173 12643 8.941995 TGACCTCTCTTATATTAGTAGCATGT 57.058 34.615 0.00 0.00 0.00 3.21
8211 12681 2.125350 CCGGAGCTTCTGGTCTGC 60.125 66.667 0.00 0.00 43.58 4.26
8222 12692 5.011125 AGCTTCTGGTCTGCGTTATATATGT 59.989 40.000 0.00 0.00 0.00 2.29
8271 15737 7.484959 GGATAAGTTTTTCTTTAATCGGTGCTG 59.515 37.037 0.00 0.00 37.56 4.41
8284 15750 1.940613 CGGTGCTGCCCTAACTTTATC 59.059 52.381 0.00 0.00 0.00 1.75
8347 15814 5.410746 GTGGCCACACATCTATCTCAATATG 59.589 44.000 31.23 0.00 46.90 1.78
8356 15823 6.484643 ACATCTATCTCAATATGTGCGCTTTT 59.515 34.615 9.73 0.00 31.56 2.27
8366 15833 1.228124 TGCGCTTTTGCTACACCCT 60.228 52.632 9.73 0.00 44.80 4.34
8371 15838 2.779506 GCTTTTGCTACACCCTACTGT 58.220 47.619 0.00 0.00 43.35 3.55
8383 15850 3.555956 CACCCTACTGTCAAACATATCGC 59.444 47.826 0.00 0.00 0.00 4.58
8398 15865 5.250200 ACATATCGCCTTTTAGTTGTCCAA 58.750 37.500 0.00 0.00 0.00 3.53
8407 15874 6.183360 GCCTTTTAGTTGTCCAACACTTAAGT 60.183 38.462 12.32 1.12 43.47 2.24
8408 15875 7.012610 GCCTTTTAGTTGTCCAACACTTAAGTA 59.987 37.037 8.04 0.00 43.47 2.24
8409 15876 9.063615 CCTTTTAGTTGTCCAACACTTAAGTAT 57.936 33.333 8.04 0.00 43.47 2.12
8413 15880 9.616156 TTAGTTGTCCAACACTTAAGTATTGAA 57.384 29.630 24.77 4.73 43.47 2.69
8414 15881 8.154649 AGTTGTCCAACACTTAAGTATTGAAG 57.845 34.615 24.77 11.38 43.47 3.02
8415 15882 6.554334 TGTCCAACACTTAAGTATTGAAGC 57.446 37.500 24.77 15.06 34.57 3.86
8427 16133 5.636903 AGTATTGAAGCCATACCTCATGT 57.363 39.130 0.00 0.00 32.21 3.21
8457 16163 8.162878 AGTTTTAGTTCTACCAAGCCTAAAAC 57.837 34.615 18.54 18.54 44.65 2.43
8468 16174 4.158579 CCAAGCCTAAAACCTCTCAATTCC 59.841 45.833 0.00 0.00 0.00 3.01
8477 16183 2.814336 ACCTCTCAATTCCAAAGTTCGC 59.186 45.455 0.00 0.00 0.00 4.70
8480 16186 3.486383 TCTCAATTCCAAAGTTCGCCTT 58.514 40.909 0.00 0.00 33.79 4.35
8485 16191 7.065803 TCTCAATTCCAAAGTTCGCCTTTATAG 59.934 37.037 0.45 0.00 41.51 1.31
8497 16203 5.598769 TCGCCTTTATAGCTCTAACTTTCC 58.401 41.667 0.00 0.00 0.00 3.13
8535 16241 7.661437 TCCACTATTATCAATTAGCACCACATC 59.339 37.037 0.00 0.00 0.00 3.06
8565 16271 6.430925 GCAAAGAGCATACAACATGGGATATA 59.569 38.462 0.00 0.00 44.79 0.86
8612 16318 3.928992 GCAAAAAGATAAGGGCTCAAAGC 59.071 43.478 0.00 0.00 41.46 3.51
8618 16324 0.328258 TAAGGGCTCAAAGCTGACCC 59.672 55.000 0.00 0.00 41.99 4.46
8622 16328 1.246737 GGCTCAAAGCTGACCCTTGG 61.247 60.000 0.00 0.00 41.99 3.61
8630 16336 1.302832 CTGACCCTTGGTGCAGTCC 60.303 63.158 0.00 0.00 35.25 3.85
8705 16412 8.587952 TCATAACATTATCGTACATGTCCTTG 57.412 34.615 0.00 0.00 32.21 3.61
8706 16413 8.417884 TCATAACATTATCGTACATGTCCTTGA 58.582 33.333 0.00 0.00 32.21 3.02
8707 16414 9.208022 CATAACATTATCGTACATGTCCTTGAT 57.792 33.333 0.00 4.51 32.21 2.57
8708 16415 7.482654 AACATTATCGTACATGTCCTTGATG 57.517 36.000 0.00 4.19 32.21 3.07
8709 16416 6.816136 ACATTATCGTACATGTCCTTGATGA 58.184 36.000 0.00 0.00 0.00 2.92
8710 16417 6.925718 ACATTATCGTACATGTCCTTGATGAG 59.074 38.462 0.00 0.16 0.00 2.90
8712 16419 2.430694 TCGTACATGTCCTTGATGAGGG 59.569 50.000 0.00 0.00 46.31 4.30
8713 16420 2.168521 CGTACATGTCCTTGATGAGGGT 59.831 50.000 0.00 0.00 46.31 4.34
8714 16421 3.383505 CGTACATGTCCTTGATGAGGGTA 59.616 47.826 0.00 0.00 46.31 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.730155 TTCGTTTACGCGCGTCAGAT 60.730 50.000 41.35 17.95 39.60 2.90
1 2 0.933973 TTTCGTTTACGCGCGTCAGA 60.934 50.000 41.35 28.52 39.60 3.27
8 9 1.224920 CGTCGGTTTCGTTTACGCG 60.225 57.895 3.53 3.53 39.60 6.01
29 30 5.684030 GCGATTTCAGAGTGACCCCTAATTA 60.684 44.000 0.00 0.00 0.00 1.40
30 31 4.770795 CGATTTCAGAGTGACCCCTAATT 58.229 43.478 0.00 0.00 0.00 1.40
34 35 0.250513 GCGATTTCAGAGTGACCCCT 59.749 55.000 0.00 0.00 0.00 4.79
40 41 1.081892 CTGTGGGCGATTTCAGAGTG 58.918 55.000 0.00 0.00 0.00 3.51
41 42 0.674895 GCTGTGGGCGATTTCAGAGT 60.675 55.000 0.00 0.00 0.00 3.24
72 73 9.097257 CCAAAAATGAATAACGGAAATGCTAAT 57.903 29.630 0.00 0.00 0.00 1.73
90 91 3.809832 ACTGACTGACTCGTCCAAAAATG 59.190 43.478 0.00 0.00 32.97 2.32
128 129 5.850557 TCATTTTGGCAGAGTTTTTCAGA 57.149 34.783 0.00 0.00 0.00 3.27
156 157 2.164624 CGATAAGGCGGGAAGGAGATAG 59.835 54.545 0.00 0.00 0.00 2.08
158 159 0.969894 CGATAAGGCGGGAAGGAGAT 59.030 55.000 0.00 0.00 0.00 2.75
163 164 1.009389 GCGATCGATAAGGCGGGAAG 61.009 60.000 21.57 0.00 0.00 3.46
185 186 8.013378 CGAATTTAGTTTCAGGTTACACGAATT 58.987 33.333 0.00 0.00 0.00 2.17
207 208 2.044946 GGGTTGCTCAGCCCGAAT 60.045 61.111 6.04 0.00 42.08 3.34
217 218 1.260544 GAGCATTGAAAGGGGTTGCT 58.739 50.000 0.00 0.00 45.75 3.91
230 231 4.677673 AAAGGAAAGCAAAGTGAGCATT 57.322 36.364 0.00 0.00 0.00 3.56
235 236 3.733684 GCGACAAAAGGAAAGCAAAGTGA 60.734 43.478 0.00 0.00 0.00 3.41
263 264 4.141914 ACAGAGGGCTTATTCTTTAGTCCG 60.142 45.833 0.00 0.00 41.09 4.79
291 292 1.767759 CCCCATCCTCGCAGAAAAAT 58.232 50.000 0.00 0.00 34.09 1.82
301 302 4.222847 GGTCGACGCCCCATCCTC 62.223 72.222 9.92 0.00 0.00 3.71
325 326 1.001641 AGCAACCTTAGCTGCCCAG 60.002 57.895 0.00 0.00 41.61 4.45
326 327 3.170362 AGCAACCTTAGCTGCCCA 58.830 55.556 0.00 0.00 41.61 5.36
331 332 1.676967 GCTGGCAGCAACCTTAGCT 60.677 57.895 33.33 0.00 41.89 3.32
332 333 2.704808 GGCTGGCAGCAACCTTAGC 61.705 63.158 37.49 16.31 44.75 3.09
333 334 2.048603 GGGCTGGCAGCAACCTTAG 61.049 63.158 37.49 0.50 44.75 2.18
334 335 2.035626 GGGCTGGCAGCAACCTTA 59.964 61.111 37.49 0.00 44.75 2.69
335 336 4.223125 TGGGCTGGCAGCAACCTT 62.223 61.111 37.49 0.00 44.75 3.50
336 337 4.982701 GTGGGCTGGCAGCAACCT 62.983 66.667 37.49 0.00 44.75 3.50
345 346 4.760047 CGAACTCGGGTGGGCTGG 62.760 72.222 0.00 0.00 35.37 4.85
346 347 3.649277 CTCGAACTCGGGTGGGCTG 62.649 68.421 0.00 0.00 40.29 4.85
347 348 3.382832 CTCGAACTCGGGTGGGCT 61.383 66.667 0.00 0.00 40.29 5.19
353 354 3.823330 CCGGGACTCGAACTCGGG 61.823 72.222 18.93 0.00 46.21 5.14
355 356 3.398353 GAGCCGGGACTCGAACTCG 62.398 68.421 2.18 4.83 42.43 4.18
356 357 2.490685 GAGCCGGGACTCGAACTC 59.509 66.667 2.18 0.00 42.43 3.01
370 371 4.664677 AGCACCACGTGTCCGAGC 62.665 66.667 15.65 9.55 35.75 5.03
371 372 2.430921 GAGCACCACGTGTCCGAG 60.431 66.667 15.65 0.51 35.75 4.63
372 373 4.337060 CGAGCACCACGTGTCCGA 62.337 66.667 15.65 0.00 35.75 4.55
380 381 2.665185 AAACTCCGCGAGCACCAC 60.665 61.111 8.23 0.00 32.04 4.16
381 382 2.357034 GAAACTCCGCGAGCACCA 60.357 61.111 8.23 0.00 32.04 4.17
382 383 2.048127 AGAAACTCCGCGAGCACC 60.048 61.111 8.23 0.00 32.04 5.01
383 384 2.095252 GGAGAAACTCCGCGAGCAC 61.095 63.158 8.23 0.00 41.08 4.40
384 385 2.261671 GGAGAAACTCCGCGAGCA 59.738 61.111 8.23 0.00 41.08 4.26
406 407 2.029380 GCTAACCCTCGTTGCCATTTTT 60.029 45.455 0.00 0.00 33.17 1.94
407 408 1.544246 GCTAACCCTCGTTGCCATTTT 59.456 47.619 0.00 0.00 33.17 1.82
408 409 1.173913 GCTAACCCTCGTTGCCATTT 58.826 50.000 0.00 0.00 33.17 2.32
409 410 0.679960 GGCTAACCCTCGTTGCCATT 60.680 55.000 0.00 0.00 41.73 3.16
410 411 1.077716 GGCTAACCCTCGTTGCCAT 60.078 57.895 0.00 0.00 41.73 4.40
411 412 2.349755 GGCTAACCCTCGTTGCCA 59.650 61.111 0.00 0.00 41.73 4.92
421 422 3.636153 AGATCAACTCAAGGGCTAACC 57.364 47.619 0.00 0.00 40.67 2.85
422 423 7.631717 AAATAAGATCAACTCAAGGGCTAAC 57.368 36.000 0.00 0.00 0.00 2.34
423 424 8.650143 AAAAATAAGATCAACTCAAGGGCTAA 57.350 30.769 0.00 0.00 0.00 3.09
466 467 9.166173 CGGGAATAAGCTATCATTTCATTGATA 57.834 33.333 0.00 0.00 37.51 2.15
467 468 7.884877 TCGGGAATAAGCTATCATTTCATTGAT 59.115 33.333 0.00 0.00 39.60 2.57
468 469 7.223584 TCGGGAATAAGCTATCATTTCATTGA 58.776 34.615 0.00 0.00 0.00 2.57
469 470 7.439157 TCGGGAATAAGCTATCATTTCATTG 57.561 36.000 0.00 0.00 0.00 2.82
470 471 8.463930 TTTCGGGAATAAGCTATCATTTCATT 57.536 30.769 0.00 0.00 0.00 2.57
471 472 8.463930 TTTTCGGGAATAAGCTATCATTTCAT 57.536 30.769 0.00 0.00 0.00 2.57
472 473 7.873719 TTTTCGGGAATAAGCTATCATTTCA 57.126 32.000 0.00 0.00 0.00 2.69
502 503 6.322201 GGAAGGAGAGATTTATCATTTTGGCA 59.678 38.462 0.00 0.00 0.00 4.92
516 517 1.458588 GGAGGCGGGAAGGAGAGAT 60.459 63.158 0.00 0.00 0.00 2.75
560 2409 0.718904 TGATGTAACGATGTGCGCAC 59.281 50.000 33.11 33.11 46.04 5.34
561 2410 1.393196 CTTGATGTAACGATGTGCGCA 59.607 47.619 5.66 5.66 46.04 6.09
562 2411 1.267532 CCTTGATGTAACGATGTGCGC 60.268 52.381 0.00 0.00 46.04 6.09
564 2413 2.609459 CTCCCTTGATGTAACGATGTGC 59.391 50.000 0.00 0.00 0.00 4.57
565 2414 2.609459 GCTCCCTTGATGTAACGATGTG 59.391 50.000 0.00 0.00 0.00 3.21
566 2415 2.420129 GGCTCCCTTGATGTAACGATGT 60.420 50.000 0.00 0.00 0.00 3.06
567 2416 2.213499 GGCTCCCTTGATGTAACGATG 58.787 52.381 0.00 0.00 0.00 3.84
568 2417 1.202533 CGGCTCCCTTGATGTAACGAT 60.203 52.381 0.00 0.00 0.00 3.73
569 2418 0.174845 CGGCTCCCTTGATGTAACGA 59.825 55.000 0.00 0.00 0.00 3.85
570 2419 0.810031 CCGGCTCCCTTGATGTAACG 60.810 60.000 0.00 0.00 0.00 3.18
571 2420 0.539986 TCCGGCTCCCTTGATGTAAC 59.460 55.000 0.00 0.00 0.00 2.50
572 2421 1.416401 GATCCGGCTCCCTTGATGTAA 59.584 52.381 0.00 0.00 0.00 2.41
573 2422 1.048601 GATCCGGCTCCCTTGATGTA 58.951 55.000 0.00 0.00 0.00 2.29
574 2423 1.700042 GGATCCGGCTCCCTTGATGT 61.700 60.000 13.69 0.00 0.00 3.06
575 2424 1.072159 GGATCCGGCTCCCTTGATG 59.928 63.158 13.69 0.00 0.00 3.07
576 2425 1.074167 AGGATCCGGCTCCCTTGAT 60.074 57.895 20.75 0.00 35.79 2.57
577 2426 1.762460 GAGGATCCGGCTCCCTTGA 60.762 63.158 20.75 0.00 35.79 3.02
578 2427 0.470080 TAGAGGATCCGGCTCCCTTG 60.470 60.000 20.75 0.00 35.79 3.61
579 2428 0.264955 TTAGAGGATCCGGCTCCCTT 59.735 55.000 20.75 11.60 35.79 3.95
580 2429 0.264955 TTTAGAGGATCCGGCTCCCT 59.735 55.000 20.75 18.18 35.79 4.20
581 2430 1.070914 CTTTTAGAGGATCCGGCTCCC 59.929 57.143 20.75 12.12 35.79 4.30
582 2431 2.040178 TCTTTTAGAGGATCCGGCTCC 58.960 52.381 16.90 16.90 33.66 4.70
626 2481 4.803426 GCGGTGGCAGAGGAGTCG 62.803 72.222 0.00 0.00 39.62 4.18
773 2628 4.143333 ATTGGAGGACGCGGACGG 62.143 66.667 12.47 0.00 46.04 4.79
787 2642 2.126071 AGGTGCCGACGACGATTG 60.126 61.111 9.28 0.00 42.66 2.67
825 2680 1.949847 CTGCGATGGAGGAAGTCGGT 61.950 60.000 0.00 0.00 36.00 4.69
831 2686 0.904865 ACTGACCTGCGATGGAGGAA 60.905 55.000 11.55 0.00 34.37 3.36
833 2688 0.103208 GTACTGACCTGCGATGGAGG 59.897 60.000 2.52 2.52 36.57 4.30
834 2689 0.817654 TGTACTGACCTGCGATGGAG 59.182 55.000 0.00 0.00 0.00 3.86
835 2690 1.485124 ATGTACTGACCTGCGATGGA 58.515 50.000 0.00 0.00 0.00 3.41
836 2691 2.743938 GTATGTACTGACCTGCGATGG 58.256 52.381 0.00 0.00 0.00 3.51
856 2711 0.801872 TTCATTTGATCCACGCACCG 59.198 50.000 0.00 0.00 0.00 4.94
863 2718 5.925506 ATCAAGCACATTCATTTGATCCA 57.074 34.783 0.00 0.00 35.91 3.41
894 2749 2.487762 CACTTTCCACGCACCATGTATT 59.512 45.455 0.00 0.00 0.00 1.89
895 2750 2.083774 CACTTTCCACGCACCATGTAT 58.916 47.619 0.00 0.00 0.00 2.29
896 2751 1.518325 CACTTTCCACGCACCATGTA 58.482 50.000 0.00 0.00 0.00 2.29
897 2752 1.795170 GCACTTTCCACGCACCATGT 61.795 55.000 0.00 0.00 0.00 3.21
898 2753 1.081242 GCACTTTCCACGCACCATG 60.081 57.895 0.00 0.00 0.00 3.66
899 2754 0.823356 AAGCACTTTCCACGCACCAT 60.823 50.000 0.00 0.00 0.00 3.55
900 2755 0.179043 TAAGCACTTTCCACGCACCA 60.179 50.000 0.00 0.00 0.00 4.17
901 2756 0.948678 TTAAGCACTTTCCACGCACC 59.051 50.000 0.00 0.00 0.00 5.01
954 2809 0.107800 CCTCCTCGTCGGTGTCTCTA 60.108 60.000 0.00 0.00 0.00 2.43
958 2813 4.131088 GGCCTCCTCGTCGGTGTC 62.131 72.222 0.00 0.00 0.00 3.67
1068 2923 0.239347 AGCTGCGTGCAGAATCAAAC 59.761 50.000 25.09 5.72 46.30 2.93
1175 3030 6.434596 CGAATCAACCAGTTACACATCAAAA 58.565 36.000 0.00 0.00 0.00 2.44
1221 3076 4.165036 CAGAGAGAGAGAATGACAACACG 58.835 47.826 0.00 0.00 0.00 4.49
1261 3116 4.789075 CTTGCGCACAGGCATGGC 62.789 66.667 11.12 12.14 43.52 4.40
1336 3191 0.602638 TCAACAGCAACCCTACAGCG 60.603 55.000 0.00 0.00 0.00 5.18
1520 3378 1.637553 AGAACAATGCTCACCCCTCAT 59.362 47.619 0.00 0.00 0.00 2.90
1595 3454 4.586001 AGAAATGCACAAAAGGATGACAGT 59.414 37.500 0.00 0.00 0.00 3.55
1635 3494 2.185004 TAAAGGAGCTGCACCAAGTC 57.815 50.000 18.31 0.00 0.00 3.01
1657 3516 9.660180 AACAAATTAAAACAAGCCAGAAACTAA 57.340 25.926 0.00 0.00 0.00 2.24
1790 3649 3.372422 AAGCAACAGGGTGCCACCA 62.372 57.895 17.22 0.00 46.14 4.17
1791 3650 2.521708 AAGCAACAGGGTGCCACC 60.522 61.111 4.93 4.93 46.14 4.61
2680 4541 5.770162 AGGAGACAAATTTTCAGGGTGTTAG 59.230 40.000 0.00 0.00 0.00 2.34
2698 4559 5.189180 AGCAAAAGTCATTATGGAGGAGAC 58.811 41.667 0.00 0.00 0.00 3.36
2779 4642 1.081174 TGAGAGGGAGAGGGGTTTGAT 59.919 52.381 0.00 0.00 0.00 2.57
2792 4655 3.257933 GCAACACGCTTGAGAGGG 58.742 61.111 0.00 0.00 41.32 4.30
2820 4683 4.147321 ACGTAGAACCCTAGAACAAGACA 58.853 43.478 0.00 0.00 0.00 3.41
3009 4872 7.002250 TCCTGGATCTCATTGTTCATATCTC 57.998 40.000 0.00 0.00 0.00 2.75
3085 4948 4.813809 TGAGAATGCCTCTAGGATCTTCT 58.186 43.478 0.00 4.30 42.44 2.85
3388 5312 1.891919 GCAACAGGTCAACGGCTCA 60.892 57.895 0.00 0.00 0.00 4.26
4039 6187 9.558396 TGGTAATTTTCTTCTGAAATTGCATTT 57.442 25.926 10.82 0.00 41.24 2.32
4235 6383 4.101585 CCATGAAACTGCCCTCTGTATCTA 59.898 45.833 0.00 0.00 0.00 1.98
4587 7303 2.980246 AGAAGGGAAGGGTGGAAAAG 57.020 50.000 0.00 0.00 0.00 2.27
5225 7955 7.136822 AGGGAGTAACATTTATGTGCATAGA 57.863 36.000 0.00 0.00 41.61 1.98
5278 8008 3.010920 TGCCACTCCCTTCTAGTGTAGTA 59.989 47.826 0.00 0.00 42.30 1.82
5297 8056 4.989279 ATGTGTGTTCCTTCATAATGCC 57.011 40.909 0.00 0.00 0.00 4.40
5388 8147 5.306678 AGCCTCAATATTTTTGTTCCACCAA 59.693 36.000 0.00 0.00 0.00 3.67
5745 8506 7.445121 AGCATGCAAGAAACAGCTATATAGTA 58.555 34.615 21.98 0.00 0.00 1.82
5935 8856 2.952310 GGTACATTTGGAGCCAGGATTC 59.048 50.000 0.00 0.00 0.00 2.52
5959 8880 3.749665 TGGAACTGGCTCAAATTTTGG 57.250 42.857 9.18 1.97 0.00 3.28
6000 8932 5.109210 CACTTCACAGTCAACTAACAGTCA 58.891 41.667 0.00 0.00 0.00 3.41
6001 8933 5.109903 ACACTTCACAGTCAACTAACAGTC 58.890 41.667 0.00 0.00 0.00 3.51
6002 8934 5.086104 ACACTTCACAGTCAACTAACAGT 57.914 39.130 0.00 0.00 0.00 3.55
6003 8935 5.233050 CAGACACTTCACAGTCAACTAACAG 59.767 44.000 0.00 0.00 37.23 3.16
6004 8936 5.109210 CAGACACTTCACAGTCAACTAACA 58.891 41.667 0.00 0.00 37.23 2.41
6005 8937 4.025647 GCAGACACTTCACAGTCAACTAAC 60.026 45.833 0.00 0.00 37.23 2.34
6006 8938 4.119862 GCAGACACTTCACAGTCAACTAA 58.880 43.478 0.00 0.00 37.23 2.24
6007 8939 3.384789 AGCAGACACTTCACAGTCAACTA 59.615 43.478 0.00 0.00 37.23 2.24
6008 8940 2.169352 AGCAGACACTTCACAGTCAACT 59.831 45.455 0.00 0.00 37.23 3.16
6009 8941 2.286294 CAGCAGACACTTCACAGTCAAC 59.714 50.000 0.00 0.00 37.23 3.18
6010 8942 2.168313 TCAGCAGACACTTCACAGTCAA 59.832 45.455 0.00 0.00 37.23 3.18
6037 8969 2.064434 TGGCACAAAGGACAACATCA 57.936 45.000 0.00 0.00 31.92 3.07
6202 9138 6.993786 TTTTGCCACATCGACAAAGATATA 57.006 33.333 0.00 0.00 34.97 0.86
6203 9139 5.895636 TTTTGCCACATCGACAAAGATAT 57.104 34.783 0.00 0.00 34.97 1.63
6549 9503 9.603921 CTGTAAATGATTGGAAGGCAAAATTAT 57.396 29.630 0.00 0.00 0.00 1.28
6836 9821 3.312421 GCGCACCTCATATACAATTGTGT 59.688 43.478 21.42 16.95 42.09 3.72
6837 9822 3.312146 TGCGCACCTCATATACAATTGTG 59.688 43.478 21.42 4.37 0.00 3.33
6873 9858 5.803020 ATCACGCTAATGAAGTTTTCCTC 57.197 39.130 0.00 0.00 30.82 3.71
7123 11485 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
7124 11486 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
7125 11487 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
7126 11488 3.367025 GTGACAAGTAATTCCGAACGGAG 59.633 47.826 15.34 5.60 46.06 4.63
7127 11489 3.243805 TGTGACAAGTAATTCCGAACGGA 60.244 43.478 12.04 12.04 43.52 4.69
7128 11490 3.061322 TGTGACAAGTAATTCCGAACGG 58.939 45.455 6.94 6.94 0.00 4.44
7129 11491 4.718858 TTGTGACAAGTAATTCCGAACG 57.281 40.909 0.00 0.00 0.00 3.95
7130 11492 7.096230 CCATTTTTGTGACAAGTAATTCCGAAC 60.096 37.037 0.00 0.00 0.00 3.95
7131 11493 6.920758 CCATTTTTGTGACAAGTAATTCCGAA 59.079 34.615 0.00 0.00 0.00 4.30
7132 11494 6.263392 TCCATTTTTGTGACAAGTAATTCCGA 59.737 34.615 0.00 0.00 0.00 4.55
7133 11495 6.442952 TCCATTTTTGTGACAAGTAATTCCG 58.557 36.000 0.00 0.00 0.00 4.30
7134 11496 7.872483 ACATCCATTTTTGTGACAAGTAATTCC 59.128 33.333 0.00 0.00 0.00 3.01
7135 11497 8.816640 ACATCCATTTTTGTGACAAGTAATTC 57.183 30.769 0.00 0.00 0.00 2.17
7138 11500 9.295825 AGATACATCCATTTTTGTGACAAGTAA 57.704 29.630 0.00 0.00 0.00 2.24
7139 11501 8.862325 AGATACATCCATTTTTGTGACAAGTA 57.138 30.769 0.00 0.00 0.00 2.24
7140 11502 7.765695 AGATACATCCATTTTTGTGACAAGT 57.234 32.000 0.00 0.00 0.00 3.16
7141 11503 8.729756 TGTAGATACATCCATTTTTGTGACAAG 58.270 33.333 0.00 0.00 0.00 3.16
7142 11504 8.628630 TGTAGATACATCCATTTTTGTGACAA 57.371 30.769 0.00 0.00 0.00 3.18
7143 11505 8.511321 GTTGTAGATACATCCATTTTTGTGACA 58.489 33.333 0.00 0.00 35.89 3.58
7144 11506 8.730680 AGTTGTAGATACATCCATTTTTGTGAC 58.269 33.333 0.00 0.00 35.89 3.67
7145 11507 8.862325 AGTTGTAGATACATCCATTTTTGTGA 57.138 30.769 0.00 0.00 35.89 3.58
7176 11538 9.553064 GTCCAAGAAATGAATGTATCTAGATGT 57.447 33.333 15.79 0.00 0.00 3.06
7177 11539 8.706936 CGTCCAAGAAATGAATGTATCTAGATG 58.293 37.037 15.79 0.00 0.00 2.90
7178 11540 8.642432 TCGTCCAAGAAATGAATGTATCTAGAT 58.358 33.333 10.73 10.73 0.00 1.98
7179 11541 8.007405 TCGTCCAAGAAATGAATGTATCTAGA 57.993 34.615 0.00 0.00 0.00 2.43
7180 11542 7.923344 ACTCGTCCAAGAAATGAATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
7181 11543 7.782049 ACTCGTCCAAGAAATGAATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
7182 11544 6.644347 ACTCGTCCAAGAAATGAATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
7183 11545 6.910536 ACTCGTCCAAGAAATGAATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
7184 11546 8.964476 ATTACTCGTCCAAGAAATGAATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
7185 11547 8.786826 AATTACTCGTCCAAGAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
7186 11548 7.148239 GGAATTACTCGTCCAAGAAATGAATGT 60.148 37.037 0.00 0.00 33.79 2.71
7187 11549 7.189512 GGAATTACTCGTCCAAGAAATGAATG 58.810 38.462 0.00 0.00 33.79 2.67
7188 11550 6.037172 CGGAATTACTCGTCCAAGAAATGAAT 59.963 38.462 0.00 0.00 33.10 2.57
7189 11551 5.350365 CGGAATTACTCGTCCAAGAAATGAA 59.650 40.000 0.00 0.00 33.10 2.57
7190 11552 4.868171 CGGAATTACTCGTCCAAGAAATGA 59.132 41.667 0.00 0.00 33.10 2.57
7191 11553 4.868171 TCGGAATTACTCGTCCAAGAAATG 59.132 41.667 0.00 0.00 33.10 2.32
7192 11554 5.080969 TCGGAATTACTCGTCCAAGAAAT 57.919 39.130 0.00 0.00 33.10 2.17
7193 11555 4.524316 TCGGAATTACTCGTCCAAGAAA 57.476 40.909 0.00 0.00 33.10 2.52
7194 11556 4.240096 GTTCGGAATTACTCGTCCAAGAA 58.760 43.478 0.00 0.00 33.10 2.52
7195 11557 3.671433 CGTTCGGAATTACTCGTCCAAGA 60.671 47.826 0.00 0.00 33.10 3.02
7196 11558 2.597305 CGTTCGGAATTACTCGTCCAAG 59.403 50.000 0.00 0.00 33.10 3.61
7197 11559 2.598589 CGTTCGGAATTACTCGTCCAA 58.401 47.619 0.00 0.00 33.10 3.53
7198 11560 1.135315 CCGTTCGGAATTACTCGTCCA 60.135 52.381 5.19 0.00 33.10 4.02
7199 11561 1.133025 TCCGTTCGGAATTACTCGTCC 59.867 52.381 11.66 0.00 0.00 4.79
7200 11562 2.448219 CTCCGTTCGGAATTACTCGTC 58.552 52.381 14.79 0.00 33.41 4.20
7201 11563 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
7202 11564 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
7203 11565 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
7204 11566 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
7205 11567 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
7206 11568 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
7207 11569 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
7208 11570 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
7209 11571 1.308069 CGTACTCCCTCCGTTCGGAA 61.308 60.000 14.79 0.04 33.41 4.30
7210 11572 1.746615 CGTACTCCCTCCGTTCGGA 60.747 63.158 13.34 13.34 0.00 4.55
7211 11573 1.589716 AACGTACTCCCTCCGTTCGG 61.590 60.000 4.74 4.74 40.46 4.30
7212 11574 1.878775 AACGTACTCCCTCCGTTCG 59.121 57.895 0.00 0.00 40.46 3.95
7214 11576 2.496899 TAGAACGTACTCCCTCCGTT 57.503 50.000 0.00 0.00 46.38 4.44
7215 11577 2.496899 TTAGAACGTACTCCCTCCGT 57.503 50.000 0.00 0.00 36.17 4.69
7216 11578 2.034305 CCATTAGAACGTACTCCCTCCG 59.966 54.545 0.00 0.00 0.00 4.63
7217 11579 3.029570 ACCATTAGAACGTACTCCCTCC 58.970 50.000 0.00 0.00 0.00 4.30
7218 11580 3.243002 CGACCATTAGAACGTACTCCCTC 60.243 52.174 0.00 0.00 0.00 4.30
7219 11581 2.686915 CGACCATTAGAACGTACTCCCT 59.313 50.000 0.00 0.00 0.00 4.20
7220 11582 2.684881 TCGACCATTAGAACGTACTCCC 59.315 50.000 0.00 0.00 0.00 4.30
7221 11583 4.288531 CATCGACCATTAGAACGTACTCC 58.711 47.826 0.00 0.00 0.00 3.85
7222 11584 4.288531 CCATCGACCATTAGAACGTACTC 58.711 47.826 0.00 0.00 0.00 2.59
7223 11585 3.490419 GCCATCGACCATTAGAACGTACT 60.490 47.826 0.00 0.00 0.00 2.73
7224 11586 2.793232 GCCATCGACCATTAGAACGTAC 59.207 50.000 0.00 0.00 0.00 3.67
7225 11587 2.691526 AGCCATCGACCATTAGAACGTA 59.308 45.455 0.00 0.00 0.00 3.57
7226 11588 1.480954 AGCCATCGACCATTAGAACGT 59.519 47.619 0.00 0.00 0.00 3.99
7227 11589 2.225068 AGCCATCGACCATTAGAACG 57.775 50.000 0.00 0.00 0.00 3.95
7798 12266 6.475727 GTGCATCTTTGAATCAATGGATCAAG 59.524 38.462 8.68 0.00 31.88 3.02
7825 12293 1.634973 TGGGGCAGATGAATCAACAGA 59.365 47.619 0.00 0.00 0.00 3.41
7881 12350 0.460109 CCGATCATGTTCACCGCAGA 60.460 55.000 4.71 0.00 0.00 4.26
7961 12430 5.984627 TGTCGTTGTTGTCATTGTAATCTG 58.015 37.500 0.00 0.00 0.00 2.90
7971 12440 4.751060 ACTAAAGACTGTCGTTGTTGTCA 58.249 39.130 17.35 0.00 32.41 3.58
7977 12446 3.380479 TGGGACTAAAGACTGTCGTTG 57.620 47.619 17.35 10.51 34.31 4.10
7981 12450 7.660208 TCAACTTATTTGGGACTAAAGACTGTC 59.340 37.037 0.00 0.00 35.69 3.51
7982 12451 7.514721 TCAACTTATTTGGGACTAAAGACTGT 58.485 34.615 0.00 0.00 35.69 3.55
7983 12452 7.119846 CCTCAACTTATTTGGGACTAAAGACTG 59.880 40.741 0.00 0.00 38.03 3.51
7984 12453 7.168905 CCTCAACTTATTTGGGACTAAAGACT 58.831 38.462 0.00 0.00 38.03 3.24
7985 12454 6.940867 ACCTCAACTTATTTGGGACTAAAGAC 59.059 38.462 0.00 0.00 38.03 3.01
8047 12516 4.349930 AGTTAACTATCCACGGGCCATAAT 59.650 41.667 6.26 0.00 0.00 1.28
8053 12522 3.373130 GTGAAAGTTAACTATCCACGGGC 59.627 47.826 8.92 0.00 0.00 6.13
8055 12524 4.992319 TGTGTGAAAGTTAACTATCCACGG 59.008 41.667 8.92 0.00 0.00 4.94
8056 12525 5.107220 GGTGTGTGAAAGTTAACTATCCACG 60.107 44.000 8.92 0.00 0.00 4.94
8066 12535 5.113446 TGTAAAGGGGTGTGTGAAAGTTA 57.887 39.130 0.00 0.00 0.00 2.24
8114 12583 3.162666 CCTAACATGATAGGAGCCCGTA 58.837 50.000 21.48 0.00 44.46 4.02
8160 12630 8.875803 CAGACGGTTAAAAACATGCTACTAATA 58.124 33.333 0.00 0.00 0.00 0.98
8173 12643 5.407995 CCGGTACATAACAGACGGTTAAAAA 59.592 40.000 2.24 0.00 44.70 1.94
8177 12647 3.351740 TCCGGTACATAACAGACGGTTA 58.648 45.455 0.00 0.54 45.55 2.85
8222 12692 5.869344 CCAACATCGACTGAGATAGTTTGAA 59.131 40.000 0.00 0.00 40.53 2.69
8263 12733 0.978151 TAAAGTTAGGGCAGCACCGA 59.022 50.000 0.00 0.00 40.62 4.69
8264 12734 1.940613 GATAAAGTTAGGGCAGCACCG 59.059 52.381 0.00 0.00 40.62 4.94
8305 15771 3.367910 GCCACAACAACAAAAAGACCAGA 60.368 43.478 0.00 0.00 0.00 3.86
8307 15773 2.354203 GGCCACAACAACAAAAAGACCA 60.354 45.455 0.00 0.00 0.00 4.02
8347 15814 1.081442 GGGTGTAGCAAAAGCGCAC 60.081 57.895 11.47 0.00 0.00 5.34
8356 15823 2.701423 TGTTTGACAGTAGGGTGTAGCA 59.299 45.455 0.00 0.00 0.00 3.49
8366 15833 7.101054 ACTAAAAGGCGATATGTTTGACAGTA 58.899 34.615 0.00 0.00 0.00 2.74
8371 15838 6.128117 GGACAACTAAAAGGCGATATGTTTGA 60.128 38.462 0.00 0.00 0.00 2.69
8383 15850 7.329588 ACTTAAGTGTTGGACAACTAAAAGG 57.670 36.000 7.48 5.75 41.67 3.11
8398 15865 6.958767 AGGTATGGCTTCAATACTTAAGTGT 58.041 36.000 18.56 8.87 0.00 3.55
8407 15874 6.747414 AGTACATGAGGTATGGCTTCAATA 57.253 37.500 0.00 0.00 41.25 1.90
8408 15875 5.636903 AGTACATGAGGTATGGCTTCAAT 57.363 39.130 0.00 0.00 41.25 2.57
8409 15876 5.435686 AAGTACATGAGGTATGGCTTCAA 57.564 39.130 0.00 0.00 41.25 2.69
8410 15877 5.661312 ACTAAGTACATGAGGTATGGCTTCA 59.339 40.000 0.00 0.00 41.25 3.02
8411 15878 6.163135 ACTAAGTACATGAGGTATGGCTTC 57.837 41.667 0.00 0.00 41.25 3.86
8413 15880 6.561519 AAACTAAGTACATGAGGTATGGCT 57.438 37.500 0.00 0.00 41.25 4.75
8414 15881 7.985752 ACTAAAACTAAGTACATGAGGTATGGC 59.014 37.037 0.00 0.00 41.25 4.40
8415 15882 9.886132 AACTAAAACTAAGTACATGAGGTATGG 57.114 33.333 0.00 0.00 41.25 2.74
8427 16133 8.198807 AGGCTTGGTAGAACTAAAACTAAGTA 57.801 34.615 0.00 0.00 35.04 2.24
8457 16163 2.162408 GGCGAACTTTGGAATTGAGAGG 59.838 50.000 0.00 0.00 0.00 3.69
8485 16191 7.201652 GGATGAGTGTTAATGGAAAGTTAGAGC 60.202 40.741 0.00 0.00 0.00 4.09
8523 16229 0.251634 TGCGGATGATGTGGTGCTAA 59.748 50.000 0.00 0.00 0.00 3.09
8535 16241 2.419673 TGTTGTATGCTCTTTGCGGATG 59.580 45.455 0.00 0.00 46.63 3.51
8565 16271 7.528543 GCCTTGGTGATGGATTAGATCTAGAAT 60.529 40.741 2.02 0.00 0.00 2.40
8585 16291 2.833943 AGCCCTTATCTTTTTGCCTTGG 59.166 45.455 0.00 0.00 0.00 3.61
8612 16318 1.302832 GGACTGCACCAAGGGTCAG 60.303 63.158 4.20 11.02 37.11 3.51
8618 16324 4.853924 ATTAAAACAGGACTGCACCAAG 57.146 40.909 0.00 0.00 0.00 3.61
8622 16328 6.756542 ACTTTTCAATTAAAACAGGACTGCAC 59.243 34.615 0.00 0.00 33.49 4.57
8630 16336 7.696453 ACACTGACGACTTTTCAATTAAAACAG 59.304 33.333 0.00 0.00 34.63 3.16
8679 16386 9.208022 CAAGGACATGTACGATAATGTTATGAT 57.792 33.333 1.41 0.00 37.15 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.