Multiple sequence alignment - TraesCS2D01G214000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G214000 chr2D 100.000 2832 0 0 1 2832 175299446 175302277 0.000000e+00 5230
1 TraesCS2D01G214000 chr2B 92.854 2631 82 43 53 2620 223090341 223092928 0.000000e+00 3720
2 TraesCS2D01G214000 chr2B 87.903 124 12 1 2617 2740 223092964 223093084 2.940000e-30 143
3 TraesCS2D01G214000 chr2A 91.981 2681 102 49 3 2620 175436470 175439100 0.000000e+00 3655
4 TraesCS2D01G214000 chr2A 90.909 55 5 0 2778 2832 175439220 175439274 1.090000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G214000 chr2D 175299446 175302277 2831 False 5230.0 5230 100.0000 1 2832 1 chr2D.!!$F1 2831
1 TraesCS2D01G214000 chr2B 223090341 223093084 2743 False 1931.5 3720 90.3785 53 2740 2 chr2B.!!$F1 2687
2 TraesCS2D01G214000 chr2A 175436470 175439274 2804 False 1865.0 3655 91.4450 3 2832 2 chr2A.!!$F1 2829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 99 0.095935 CTCATCAAAGCGAACGCAGG 59.904 55.0 20.66 9.66 44.88 4.85 F
960 1011 0.249615 CTCCATCGATCCACGCACAT 60.250 55.0 0.00 0.00 42.26 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 1849 0.115152 TTCCCTCCTCTGCACTCTCA 59.885 55.0 0.00 0.0 0.0 3.27 R
2450 2515 0.171455 CGCAGTAGCTCGAGGAGTTT 59.829 55.0 15.58 0.0 39.1 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.910977 AGGGTTAATTTGGACGAGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
94 99 0.095935 CTCATCAAAGCGAACGCAGG 59.904 55.000 20.66 9.66 44.88 4.85
207 218 3.667217 TAGTTCTACCCGCGCCCCT 62.667 63.158 0.00 0.00 0.00 4.79
226 237 4.446413 GCCCGGTGGTACGTGGAG 62.446 72.222 0.00 0.00 0.00 3.86
227 238 2.993264 CCCGGTGGTACGTGGAGT 60.993 66.667 0.00 0.00 0.00 3.85
275 287 1.596954 CGTCGGTTGCTTTTCCTTGTG 60.597 52.381 0.00 0.00 0.00 3.33
455 484 2.977169 CGCAAACCGATGAACGAAAAAT 59.023 40.909 0.00 0.00 45.77 1.82
460 491 6.247791 GCAAACCGATGAACGAAAAATACTAC 59.752 38.462 0.00 0.00 45.77 2.73
510 541 8.171196 CGTAAGATCAAACGTTCACTACTAGTA 58.829 37.037 0.00 1.89 43.02 1.82
511 542 9.488124 GTAAGATCAAACGTTCACTACTAGTAG 57.512 37.037 25.30 25.30 39.04 2.57
512 543 7.684937 AGATCAAACGTTCACTACTAGTAGT 57.315 36.000 26.61 26.61 46.52 2.73
536 567 8.915036 AGTAGTTTATAGTATCTTGGTCTGTGG 58.085 37.037 0.00 0.00 0.00 4.17
539 570 7.182206 AGTTTATAGTATCTTGGTCTGTGGGTT 59.818 37.037 0.00 0.00 0.00 4.11
540 571 3.703001 AGTATCTTGGTCTGTGGGTTG 57.297 47.619 0.00 0.00 0.00 3.77
544 575 1.286553 TCTTGGTCTGTGGGTTGGTTT 59.713 47.619 0.00 0.00 0.00 3.27
545 576 1.681264 CTTGGTCTGTGGGTTGGTTTC 59.319 52.381 0.00 0.00 0.00 2.78
580 616 1.586154 GGCACCATTGAACCGGACTG 61.586 60.000 9.46 0.00 0.00 3.51
631 667 2.178521 CTGCTCCGTACGCGTCTT 59.821 61.111 18.63 0.00 36.15 3.01
695 734 1.409241 CCAGTTGCTCATAGCCACCAT 60.409 52.381 0.00 0.00 41.51 3.55
742 781 2.954868 CTCCATCGCCGTACGTGC 60.955 66.667 15.21 15.61 44.19 5.34
750 789 2.566529 CCGTACGTGCAGAGCTCA 59.433 61.111 17.77 0.00 0.00 4.26
766 809 0.597568 CTCATAGCTCCCGCTCTCTG 59.402 60.000 0.00 0.00 45.15 3.35
781 824 4.021016 CGCTCTCTGGCCTTATATAAACCT 60.021 45.833 3.32 0.00 0.00 3.50
885 932 2.024871 CCAGCCGTCTCGATCGTC 59.975 66.667 15.94 6.35 0.00 4.20
959 1010 1.141665 CTCCATCGATCCACGCACA 59.858 57.895 0.00 0.00 42.26 4.57
960 1011 0.249615 CTCCATCGATCCACGCACAT 60.250 55.000 0.00 0.00 42.26 3.21
1335 1386 3.788766 GAATGCAGCGTCGCCGTT 61.789 61.111 14.86 7.13 36.15 4.44
1597 1648 4.082733 ACGTCACTCATGGATCCATATACG 60.083 45.833 26.87 27.19 34.91 3.06
1598 1649 4.177026 GTCACTCATGGATCCATATACGC 58.823 47.826 26.87 11.85 34.91 4.42
1599 1650 3.831911 TCACTCATGGATCCATATACGCA 59.168 43.478 26.87 7.10 34.91 5.24
1649 1707 9.757227 CTTCCTCTTCGATATATAATTCCATCC 57.243 37.037 0.00 0.00 0.00 3.51
1839 1897 7.214467 TCGTTTCAAGGCTCTAATTTTGAAT 57.786 32.000 2.47 0.00 38.77 2.57
2007 2071 7.518731 TCGTTTTTCTTTGGTTGATTCTTTG 57.481 32.000 0.00 0.00 0.00 2.77
2080 2145 1.348064 AAGCTATACGGCTGGCCATA 58.652 50.000 5.51 0.00 42.24 2.74
2151 2216 7.711846 ACATGTACTGCACAAAGTCAAATAAA 58.288 30.769 0.00 0.00 41.55 1.40
2152 2217 8.359642 ACATGTACTGCACAAAGTCAAATAAAT 58.640 29.630 0.00 0.00 41.55 1.40
2250 2315 2.752354 TGGTGATCTTTTAACCATGCCG 59.248 45.455 0.00 0.00 39.05 5.69
2260 2325 1.039856 AACCATGCCGAAACAGCTTT 58.960 45.000 0.00 0.00 0.00 3.51
2304 2369 3.248602 CCTACGAGCTAACAATGGCATTC 59.751 47.826 10.36 0.00 35.08 2.67
2343 2408 1.255882 ATGCAAATTGTTCTCCGCCA 58.744 45.000 0.00 0.00 0.00 5.69
2395 2460 6.404074 CCATTTCTAGAGTGCCACAATTCTTC 60.404 42.308 0.00 0.00 0.00 2.87
2418 2483 1.066286 GCAAGGAGCAGATCAGTGTCT 60.066 52.381 0.00 0.00 44.79 3.41
2450 2515 1.604308 CATCAGCCTTGTGCCCACA 60.604 57.895 0.00 0.00 42.71 4.17
2495 2579 1.215382 CCACCATGCTCGTCGAGAA 59.785 57.895 26.11 16.73 0.00 2.87
2583 2679 4.764679 TGAAATTTGAGGTGTTGGATCG 57.235 40.909 0.00 0.00 0.00 3.69
2594 2690 2.088423 TGTTGGATCGTAACCAATGGC 58.912 47.619 0.00 3.46 46.78 4.40
2606 2705 3.627395 ACCAATGGCGATCTCTTAACA 57.373 42.857 0.00 0.00 0.00 2.41
2622 2760 8.412608 TCTCTTAACAATGCTCGAAATAGAAG 57.587 34.615 0.00 0.00 0.00 2.85
2628 2766 4.606457 ATGCTCGAAATAGAAGCAACAC 57.394 40.909 0.00 0.00 39.04 3.32
2648 2786 5.876357 ACACCCAAGTTCTGAAATAGCTTA 58.124 37.500 0.00 0.00 0.00 3.09
2649 2787 6.485171 ACACCCAAGTTCTGAAATAGCTTAT 58.515 36.000 0.00 0.00 0.00 1.73
2674 2812 2.661176 TCCTCCAACTTCCACCCTAT 57.339 50.000 0.00 0.00 0.00 2.57
2682 2820 1.282157 ACTTCCACCCTATGAGCCAAC 59.718 52.381 0.00 0.00 0.00 3.77
2740 2878 0.689623 CCTCTCTTGAGTGCCAACCT 59.310 55.000 0.00 0.00 38.61 3.50
2741 2879 1.610102 CCTCTCTTGAGTGCCAACCTG 60.610 57.143 0.00 0.00 38.61 4.00
2742 2880 1.345741 CTCTCTTGAGTGCCAACCTGA 59.654 52.381 0.00 0.00 35.67 3.86
2743 2881 1.980765 TCTCTTGAGTGCCAACCTGAT 59.019 47.619 0.00 0.00 0.00 2.90
2744 2882 2.373169 TCTCTTGAGTGCCAACCTGATT 59.627 45.455 0.00 0.00 0.00 2.57
2745 2883 3.152341 CTCTTGAGTGCCAACCTGATTT 58.848 45.455 0.00 0.00 0.00 2.17
2746 2884 3.565307 TCTTGAGTGCCAACCTGATTTT 58.435 40.909 0.00 0.00 0.00 1.82
2747 2885 3.960102 TCTTGAGTGCCAACCTGATTTTT 59.040 39.130 0.00 0.00 0.00 1.94
2771 2909 3.347590 GGGGGTGGGGGAGAAAGG 61.348 72.222 0.00 0.00 0.00 3.11
2772 2910 3.347590 GGGGTGGGGGAGAAAGGG 61.348 72.222 0.00 0.00 0.00 3.95
2773 2911 2.204244 GGGTGGGGGAGAAAGGGA 60.204 66.667 0.00 0.00 0.00 4.20
2774 2912 2.309504 GGGTGGGGGAGAAAGGGAG 61.310 68.421 0.00 0.00 0.00 4.30
2775 2913 2.677848 GTGGGGGAGAAAGGGAGC 59.322 66.667 0.00 0.00 0.00 4.70
2776 2914 3.009115 TGGGGGAGAAAGGGAGCG 61.009 66.667 0.00 0.00 0.00 5.03
2777 2915 2.687566 GGGGGAGAAAGGGAGCGA 60.688 66.667 0.00 0.00 0.00 4.93
2778 2916 2.298661 GGGGGAGAAAGGGAGCGAA 61.299 63.158 0.00 0.00 0.00 4.70
2779 2917 1.636769 GGGGGAGAAAGGGAGCGAAT 61.637 60.000 0.00 0.00 0.00 3.34
2780 2918 1.129058 GGGGAGAAAGGGAGCGAATA 58.871 55.000 0.00 0.00 0.00 1.75
2781 2919 1.202663 GGGGAGAAAGGGAGCGAATAC 60.203 57.143 0.00 0.00 0.00 1.89
2782 2920 1.485066 GGGAGAAAGGGAGCGAATACA 59.515 52.381 0.00 0.00 0.00 2.29
2783 2921 2.093128 GGGAGAAAGGGAGCGAATACAA 60.093 50.000 0.00 0.00 0.00 2.41
2784 2922 2.937149 GGAGAAAGGGAGCGAATACAAC 59.063 50.000 0.00 0.00 0.00 3.32
2785 2923 2.937149 GAGAAAGGGAGCGAATACAACC 59.063 50.000 0.00 0.00 0.00 3.77
2786 2924 2.304761 AGAAAGGGAGCGAATACAACCA 59.695 45.455 0.00 0.00 0.00 3.67
2787 2925 2.871096 AAGGGAGCGAATACAACCAA 57.129 45.000 0.00 0.00 0.00 3.67
2788 2926 3.366052 AAGGGAGCGAATACAACCAAT 57.634 42.857 0.00 0.00 0.00 3.16
2789 2927 2.643551 AGGGAGCGAATACAACCAATG 58.356 47.619 0.00 0.00 0.00 2.82
2820 2958 1.339610 TGTCCTTCGGTTGGCATTTTG 59.660 47.619 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.328864 GCTAGTACATCTTTTCTCGGTAAAATG 58.671 37.037 0.00 0.00 0.00 2.32
1 2 8.258708 AGCTAGTACATCTTTTCTCGGTAAAAT 58.741 33.333 0.00 0.00 0.00 1.82
49 50 2.696707 ACTTTCAACACCTCGTACCTGA 59.303 45.455 0.00 0.00 0.00 3.86
50 51 3.107642 ACTTTCAACACCTCGTACCTG 57.892 47.619 0.00 0.00 0.00 4.00
51 52 3.133362 TCAACTTTCAACACCTCGTACCT 59.867 43.478 0.00 0.00 0.00 3.08
94 99 2.503375 CCGACTGTACGTCCGTGC 60.503 66.667 1.98 1.35 39.56 5.34
152 163 2.746277 CGTTTCCTTCCTGGCCGG 60.746 66.667 3.88 3.88 35.26 6.13
153 164 2.746277 CCGTTTCCTTCCTGGCCG 60.746 66.667 0.00 0.00 35.26 6.13
154 165 1.674651 GACCGTTTCCTTCCTGGCC 60.675 63.158 0.00 0.00 35.26 5.36
155 166 0.673956 GAGACCGTTTCCTTCCTGGC 60.674 60.000 0.00 0.00 35.26 4.85
209 220 4.446413 CTCCACGTACCACCGGGC 62.446 72.222 6.32 0.00 37.90 6.13
211 222 0.962356 ACTACTCCACGTACCACCGG 60.962 60.000 0.00 0.00 0.00 5.28
214 225 2.419324 CAGAGACTACTCCACGTACCAC 59.581 54.545 0.00 0.00 43.53 4.16
215 226 2.039480 ACAGAGACTACTCCACGTACCA 59.961 50.000 0.00 0.00 43.53 3.25
217 228 3.126686 GGAACAGAGACTACTCCACGTAC 59.873 52.174 0.00 0.00 43.53 3.67
218 229 3.244665 TGGAACAGAGACTACTCCACGTA 60.245 47.826 0.00 0.00 43.53 3.57
219 230 2.161030 GGAACAGAGACTACTCCACGT 58.839 52.381 0.00 0.00 43.53 4.49
220 231 2.095161 GTGGAACAGAGACTACTCCACG 60.095 54.545 12.41 0.00 44.75 4.94
221 232 3.579335 GTGGAACAGAGACTACTCCAC 57.421 52.381 12.41 12.41 46.70 4.02
222 233 2.110188 AGGTGGAACAGAGACTACTCCA 59.890 50.000 0.00 0.00 41.80 3.86
224 235 2.756207 GGAGGTGGAACAGAGACTACTC 59.244 54.545 0.00 0.00 41.80 2.59
225 236 2.110188 TGGAGGTGGAACAGAGACTACT 59.890 50.000 0.00 0.00 41.80 2.57
226 237 2.526432 TGGAGGTGGAACAGAGACTAC 58.474 52.381 0.00 0.00 41.80 2.73
227 238 2.897969 GTTGGAGGTGGAACAGAGACTA 59.102 50.000 0.00 0.00 41.80 2.59
264 276 3.230134 TGGATTGGGACACAAGGAAAAG 58.770 45.455 0.00 0.00 43.48 2.27
275 287 6.486993 GTGGAGTATTTTAGATGGATTGGGAC 59.513 42.308 0.00 0.00 0.00 4.46
426 455 2.004017 TCATCGGTTTGCGTGGATAAC 58.996 47.619 0.00 0.00 0.00 1.89
460 491 7.061905 ACGTTGATCACTTTTACAATCGTCTAG 59.938 37.037 0.00 0.00 30.92 2.43
510 541 8.915036 CCACAGACCAAGATACTATAAACTACT 58.085 37.037 0.00 0.00 0.00 2.57
511 542 8.142551 CCCACAGACCAAGATACTATAAACTAC 58.857 40.741 0.00 0.00 0.00 2.73
512 543 7.842743 ACCCACAGACCAAGATACTATAAACTA 59.157 37.037 0.00 0.00 0.00 2.24
535 566 2.281276 ACGCGAGGAAACCAACCC 60.281 61.111 15.93 0.00 0.00 4.11
536 567 0.883370 AAGACGCGAGGAAACCAACC 60.883 55.000 15.93 0.00 0.00 3.77
539 570 1.959226 GCAAGACGCGAGGAAACCA 60.959 57.895 15.93 0.00 0.00 3.67
540 571 2.861006 GCAAGACGCGAGGAAACC 59.139 61.111 15.93 0.00 0.00 3.27
580 616 3.613432 GCCATATGGTACGTGGTAGTAGC 60.613 52.174 22.79 0.00 43.23 3.58
631 667 7.283807 GGTTTGAAAAGGTGGAAAACTAGTAGA 59.716 37.037 3.59 0.00 32.60 2.59
766 809 4.565861 GGGAGCTCAGGTTTATATAAGGCC 60.566 50.000 17.19 0.00 0.00 5.19
781 824 2.833582 GACCGATCGGGGAGCTCA 60.834 66.667 35.87 0.00 41.60 4.26
885 932 0.894642 GGTAGCTAGCTAGGTCCGGG 60.895 65.000 27.84 0.00 35.39 5.73
959 1010 0.525668 GCTCAGCTGCGTACGTGTAT 60.526 55.000 17.90 0.00 0.00 2.29
960 1011 1.154093 GCTCAGCTGCGTACGTGTA 60.154 57.895 17.90 3.04 0.00 2.90
1335 1386 2.735772 GCTCGGGGAGAAGATGGCA 61.736 63.158 0.00 0.00 0.00 4.92
1649 1707 2.860293 GTGGACATTCACGCCACG 59.140 61.111 0.00 0.00 42.20 4.94
1791 1849 0.115152 TTCCCTCCTCTGCACTCTCA 59.885 55.000 0.00 0.00 0.00 3.27
1839 1897 5.492895 TGAATAGTAGCCGTTGATTTTCCA 58.507 37.500 0.00 0.00 0.00 3.53
1960 2019 7.067008 ACGAATGTCCTCTCAAAAGAAAAGAAA 59.933 33.333 0.00 0.00 0.00 2.52
1961 2020 6.542370 ACGAATGTCCTCTCAAAAGAAAAGAA 59.458 34.615 0.00 0.00 0.00 2.52
1962 2021 6.055588 ACGAATGTCCTCTCAAAAGAAAAGA 58.944 36.000 0.00 0.00 0.00 2.52
1963 2022 6.305693 ACGAATGTCCTCTCAAAAGAAAAG 57.694 37.500 0.00 0.00 0.00 2.27
1964 2023 6.693315 AACGAATGTCCTCTCAAAAGAAAA 57.307 33.333 0.00 0.00 0.00 2.29
1965 2024 6.693315 AAACGAATGTCCTCTCAAAAGAAA 57.307 33.333 0.00 0.00 0.00 2.52
1976 2040 5.126384 TCAACCAAAGAAAAACGAATGTCCT 59.874 36.000 0.00 0.00 0.00 3.85
2007 2071 4.334481 CACCCATGAACCTAATTTACCGAC 59.666 45.833 0.00 0.00 0.00 4.79
2080 2145 1.893808 CTGAAGTTGCGGTGCCTGT 60.894 57.895 0.00 0.00 0.00 4.00
2198 2263 5.522641 AGATCCAAGGCCTCACATATTTTT 58.477 37.500 5.23 0.00 0.00 1.94
2204 2269 1.918262 TGAAGATCCAAGGCCTCACAT 59.082 47.619 5.23 0.00 0.00 3.21
2250 2315 3.737774 GCAGGATCAACAAAAGCTGTTTC 59.262 43.478 0.00 0.00 46.49 2.78
2260 2325 0.322816 GGAGGCTGCAGGATCAACAA 60.323 55.000 17.12 0.00 0.00 2.83
2329 2394 5.300792 TCTTTTTAGTTGGCGGAGAACAATT 59.699 36.000 0.00 0.00 0.00 2.32
2343 2408 8.082242 CGGAGGATCAATTGTTTCTTTTTAGTT 58.918 33.333 5.13 0.00 36.25 2.24
2395 2460 0.252479 ACTGATCTGCTCCTTGCCAG 59.748 55.000 0.00 0.00 42.00 4.85
2418 2483 2.686405 GGCTGATGCATTCACAGATGAA 59.314 45.455 15.96 0.00 41.57 2.57
2450 2515 0.171455 CGCAGTAGCTCGAGGAGTTT 59.829 55.000 15.58 0.00 39.10 2.66
2583 2679 4.873827 TGTTAAGAGATCGCCATTGGTTAC 59.126 41.667 4.26 0.00 0.00 2.50
2594 2690 5.702622 TTTCGAGCATTGTTAAGAGATCG 57.297 39.130 0.00 0.00 0.00 3.69
2606 2705 4.142600 GGTGTTGCTTCTATTTCGAGCATT 60.143 41.667 0.00 0.00 44.95 3.56
2622 2760 3.733443 ATTTCAGAACTTGGGTGTTGC 57.267 42.857 0.00 0.00 0.00 4.17
2628 2766 6.183360 CCACATAAGCTATTTCAGAACTTGGG 60.183 42.308 0.00 0.00 0.00 4.12
2700 2838 4.898861 AGGCCAGAGAACCAATTTTTGTAA 59.101 37.500 5.01 0.00 0.00 2.41
2701 2839 4.479158 AGGCCAGAGAACCAATTTTTGTA 58.521 39.130 5.01 0.00 0.00 2.41
2703 2841 3.575687 AGAGGCCAGAGAACCAATTTTTG 59.424 43.478 5.01 0.00 0.00 2.44
2709 2847 1.349026 CAAGAGAGGCCAGAGAACCAA 59.651 52.381 5.01 0.00 0.00 3.67
2710 2848 0.979665 CAAGAGAGGCCAGAGAACCA 59.020 55.000 5.01 0.00 0.00 3.67
2711 2849 1.206849 CTCAAGAGAGGCCAGAGAACC 59.793 57.143 5.01 0.00 38.26 3.62
2754 2892 3.347590 CCTTTCTCCCCCACCCCC 61.348 72.222 0.00 0.00 0.00 5.40
2755 2893 3.347590 CCCTTTCTCCCCCACCCC 61.348 72.222 0.00 0.00 0.00 4.95
2756 2894 2.204244 TCCCTTTCTCCCCCACCC 60.204 66.667 0.00 0.00 0.00 4.61
2757 2895 2.985116 GCTCCCTTTCTCCCCCACC 61.985 68.421 0.00 0.00 0.00 4.61
2758 2896 2.677848 GCTCCCTTTCTCCCCCAC 59.322 66.667 0.00 0.00 0.00 4.61
2759 2897 3.009115 CGCTCCCTTTCTCCCCCA 61.009 66.667 0.00 0.00 0.00 4.96
2760 2898 1.636769 ATTCGCTCCCTTTCTCCCCC 61.637 60.000 0.00 0.00 0.00 5.40
2761 2899 1.129058 TATTCGCTCCCTTTCTCCCC 58.871 55.000 0.00 0.00 0.00 4.81
2762 2900 1.485066 TGTATTCGCTCCCTTTCTCCC 59.515 52.381 0.00 0.00 0.00 4.30
2763 2901 2.937149 GTTGTATTCGCTCCCTTTCTCC 59.063 50.000 0.00 0.00 0.00 3.71
2764 2902 2.937149 GGTTGTATTCGCTCCCTTTCTC 59.063 50.000 0.00 0.00 0.00 2.87
2765 2903 2.304761 TGGTTGTATTCGCTCCCTTTCT 59.695 45.455 0.00 0.00 0.00 2.52
2766 2904 2.706890 TGGTTGTATTCGCTCCCTTTC 58.293 47.619 0.00 0.00 0.00 2.62
2767 2905 2.871096 TGGTTGTATTCGCTCCCTTT 57.129 45.000 0.00 0.00 0.00 3.11
2768 2906 2.871096 TTGGTTGTATTCGCTCCCTT 57.129 45.000 0.00 0.00 0.00 3.95
2769 2907 2.238646 TCATTGGTTGTATTCGCTCCCT 59.761 45.455 0.00 0.00 0.00 4.20
2770 2908 2.354821 GTCATTGGTTGTATTCGCTCCC 59.645 50.000 0.00 0.00 0.00 4.30
2771 2909 3.006940 TGTCATTGGTTGTATTCGCTCC 58.993 45.455 0.00 0.00 0.00 4.70
2772 2910 4.678509 TTGTCATTGGTTGTATTCGCTC 57.321 40.909 0.00 0.00 0.00 5.03
2773 2911 4.458989 ACATTGTCATTGGTTGTATTCGCT 59.541 37.500 0.16 0.00 0.00 4.93
2774 2912 4.732784 ACATTGTCATTGGTTGTATTCGC 58.267 39.130 0.16 0.00 0.00 4.70
2775 2913 7.302350 TCTACATTGTCATTGGTTGTATTCG 57.698 36.000 0.00 0.00 0.00 3.34
2776 2914 8.677300 ACATCTACATTGTCATTGGTTGTATTC 58.323 33.333 0.00 0.00 0.00 1.75
2777 2915 8.579850 ACATCTACATTGTCATTGGTTGTATT 57.420 30.769 0.00 0.00 0.00 1.89
2778 2916 7.283127 GGACATCTACATTGTCATTGGTTGTAT 59.717 37.037 6.20 0.00 44.22 2.29
2779 2917 6.597672 GGACATCTACATTGTCATTGGTTGTA 59.402 38.462 6.20 0.00 44.22 2.41
2780 2918 5.415701 GGACATCTACATTGTCATTGGTTGT 59.584 40.000 6.20 0.00 44.22 3.32
2781 2919 5.649395 AGGACATCTACATTGTCATTGGTTG 59.351 40.000 6.20 0.00 44.22 3.77
2782 2920 5.819991 AGGACATCTACATTGTCATTGGTT 58.180 37.500 6.20 0.00 44.22 3.67
2783 2921 5.441718 AGGACATCTACATTGTCATTGGT 57.558 39.130 6.20 0.00 44.22 3.67
2784 2922 5.007039 CGAAGGACATCTACATTGTCATTGG 59.993 44.000 8.25 4.09 45.12 3.16
2785 2923 6.040962 CGAAGGACATCTACATTGTCATTG 57.959 41.667 8.25 0.00 45.12 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.