Multiple sequence alignment - TraesCS2D01G213100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G213100 chr2D 100.000 4032 0 0 1 4032 172999385 172995354 0.000000e+00 7446.0
1 TraesCS2D01G213100 chr2D 100.000 3942 0 0 4214 8155 172995172 172991231 0.000000e+00 7280.0
2 TraesCS2D01G213100 chr2A 93.328 3447 132 40 640 4030 176886389 176889793 0.000000e+00 5001.0
3 TraesCS2D01G213100 chr2A 93.476 3035 136 22 4220 7229 176889848 176892845 0.000000e+00 4451.0
4 TraesCS2D01G213100 chr2A 89.172 942 74 19 7234 8155 778639850 778638917 0.000000e+00 1149.0
5 TraesCS2D01G213100 chr2A 88.030 944 83 19 7234 8155 690527552 690528487 0.000000e+00 1090.0
6 TraesCS2D01G213100 chr2A 77.895 285 58 4 245 526 176874092 176874374 1.090000e-38 172.0
7 TraesCS2D01G213100 chr2A 93.478 46 3 0 7069 7114 286642293 286642338 1.470000e-07 69.4
8 TraesCS2D01G213100 chr2B 92.682 3457 142 48 640 4030 225256215 225259626 0.000000e+00 4879.0
9 TraesCS2D01G213100 chr2B 94.963 1608 55 5 4223 5813 225259988 225261586 0.000000e+00 2497.0
10 TraesCS2D01G213100 chr2B 94.570 1197 44 10 5812 7006 225261670 225262847 0.000000e+00 1831.0
11 TraesCS2D01G213100 chr2B 84.211 304 39 5 6922 7221 225265071 225265369 3.720000e-73 287.0
12 TraesCS2D01G213100 chr2B 86.538 260 26 5 2 253 225255087 225255345 2.240000e-70 278.0
13 TraesCS2D01G213100 chr2B 87.640 178 19 2 245 421 225255607 225255782 3.860000e-48 204.0
14 TraesCS2D01G213100 chr2B 85.714 147 14 5 422 568 225256038 225256177 1.830000e-31 148.0
15 TraesCS2D01G213100 chr2B 95.122 82 4 0 6838 6919 225262843 225262924 6.640000e-26 130.0
16 TraesCS2D01G213100 chr1D 94.231 936 34 6 7237 8155 478577859 478576927 0.000000e+00 1411.0
17 TraesCS2D01G213100 chr1D 93.848 829 35 6 7233 8050 89230875 89231698 0.000000e+00 1234.0
18 TraesCS2D01G213100 chr1D 95.122 41 2 0 610 650 415209056 415209016 1.900000e-06 65.8
19 TraesCS2D01G213100 chr7B 91.480 939 55 18 7233 8154 741989657 741988727 0.000000e+00 1267.0
20 TraesCS2D01G213100 chr7B 87.838 74 3 4 575 642 707597610 707597683 1.890000e-11 82.4
21 TraesCS2D01G213100 chr7B 86.486 74 4 3 575 642 707597682 707597609 8.780000e-10 76.8
22 TraesCS2D01G213100 chr7B 92.857 42 2 1 611 652 528017224 528017184 8.840000e-05 60.2
23 TraesCS2D01G213100 chr4A 90.784 944 62 17 7226 8155 725587521 725586589 0.000000e+00 1238.0
24 TraesCS2D01G213100 chr4A 89.172 942 77 15 7233 8155 21031212 21032147 0.000000e+00 1151.0
25 TraesCS2D01G213100 chr4A 95.652 46 2 0 7069 7114 181224180 181224135 3.160000e-09 75.0
26 TraesCS2D01G213100 chr4D 90.476 945 63 17 7234 8155 489337851 489336911 0.000000e+00 1221.0
27 TraesCS2D01G213100 chr4D 98.592 71 1 0 7234 7304 489326917 489326847 8.590000e-25 126.0
28 TraesCS2D01G213100 chr4D 89.552 67 1 2 575 635 499704186 499704120 6.780000e-11 80.5
29 TraesCS2D01G213100 chr5D 90.223 941 61 19 7233 8155 495365106 495364179 0.000000e+00 1199.0
30 TraesCS2D01G213100 chr5D 95.349 43 2 0 7069 7111 67292713 67292671 1.470000e-07 69.4
31 TraesCS2D01G213100 chr5D 100.000 35 0 0 611 645 298911062 298911028 1.900000e-06 65.8
32 TraesCS2D01G213100 chr7D 89.673 949 69 19 7229 8155 62164854 62165795 0.000000e+00 1182.0
33 TraesCS2D01G213100 chr7D 89.706 68 6 1 575 641 301956872 301956939 1.460000e-12 86.1
34 TraesCS2D01G213100 chr7A 89.255 940 74 16 7233 8155 674503455 674504384 0.000000e+00 1151.0
35 TraesCS2D01G213100 chr7A 93.478 46 3 0 7069 7114 489166482 489166527 1.470000e-07 69.4
36 TraesCS2D01G213100 chr4B 88.571 945 80 20 7226 8155 575806508 575807439 0.000000e+00 1122.0
37 TraesCS2D01G213100 chr3D 90.000 70 4 1 578 644 587513015 587512946 4.050000e-13 87.9
38 TraesCS2D01G213100 chr1B 87.838 74 2 5 575 641 170130194 170130267 6.780000e-11 80.5
39 TraesCS2D01G213100 chr3B 97.674 43 1 0 567 609 782122871 782122829 3.160000e-09 75.0
40 TraesCS2D01G213100 chrUn 100.000 39 0 0 573 611 202220542 202220504 1.140000e-08 73.1
41 TraesCS2D01G213100 chrUn 100.000 39 0 0 573 611 204469089 204469051 1.140000e-08 73.1
42 TraesCS2D01G213100 chr6B 95.349 43 2 0 7069 7111 468436534 468436576 1.470000e-07 69.4
43 TraesCS2D01G213100 chr6B 95.349 43 2 0 7069 7111 536991373 536991415 1.470000e-07 69.4
44 TraesCS2D01G213100 chr5B 95.349 43 2 0 7069 7111 221422856 221422898 1.470000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G213100 chr2D 172991231 172999385 8154 True 7363.00 7446 100.000 1 8155 2 chr2D.!!$R1 8154
1 TraesCS2D01G213100 chr2A 176886389 176892845 6456 False 4726.00 5001 93.402 640 7229 2 chr2A.!!$F4 6589
2 TraesCS2D01G213100 chr2A 778638917 778639850 933 True 1149.00 1149 89.172 7234 8155 1 chr2A.!!$R1 921
3 TraesCS2D01G213100 chr2A 690527552 690528487 935 False 1090.00 1090 88.030 7234 8155 1 chr2A.!!$F3 921
4 TraesCS2D01G213100 chr2B 225255087 225265369 10282 False 1281.75 4879 90.180 2 7221 8 chr2B.!!$F1 7219
5 TraesCS2D01G213100 chr1D 478576927 478577859 932 True 1411.00 1411 94.231 7237 8155 1 chr1D.!!$R2 918
6 TraesCS2D01G213100 chr1D 89230875 89231698 823 False 1234.00 1234 93.848 7233 8050 1 chr1D.!!$F1 817
7 TraesCS2D01G213100 chr7B 741988727 741989657 930 True 1267.00 1267 91.480 7233 8154 1 chr7B.!!$R3 921
8 TraesCS2D01G213100 chr4A 725586589 725587521 932 True 1238.00 1238 90.784 7226 8155 1 chr4A.!!$R2 929
9 TraesCS2D01G213100 chr4A 21031212 21032147 935 False 1151.00 1151 89.172 7233 8155 1 chr4A.!!$F1 922
10 TraesCS2D01G213100 chr4D 489336911 489337851 940 True 1221.00 1221 90.476 7234 8155 1 chr4D.!!$R2 921
11 TraesCS2D01G213100 chr5D 495364179 495365106 927 True 1199.00 1199 90.223 7233 8155 1 chr5D.!!$R3 922
12 TraesCS2D01G213100 chr7D 62164854 62165795 941 False 1182.00 1182 89.673 7229 8155 1 chr7D.!!$F1 926
13 TraesCS2D01G213100 chr7A 674503455 674504384 929 False 1151.00 1151 89.255 7233 8155 1 chr7A.!!$F2 922
14 TraesCS2D01G213100 chr4B 575806508 575807439 931 False 1122.00 1122 88.571 7226 8155 1 chr4B.!!$F1 929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 178 0.104671 CAACACTGCCCCAAACCAAG 59.895 55.0 0.00 0.00 0.00 3.61 F
732 1300 0.108138 GTTATCAGCGACCCTGTGCT 60.108 55.0 0.00 0.00 42.38 4.40 F
795 1363 0.251341 AAGCCACAGCCCTACCTTTG 60.251 55.0 0.00 0.00 41.25 2.77 F
2442 3105 0.038166 ATCGCATGTGGAGTTTGGGT 59.962 50.0 6.39 0.00 0.00 4.51 F
3189 3853 1.136828 TCAAATATCCGGGACCCTGG 58.863 55.0 9.41 11.85 43.69 4.45 F
4717 5574 0.452784 GCGCTGCGTACTGAAAAAGG 60.453 55.0 24.04 0.00 0.00 3.11 F
5478 6337 0.667487 CGAGTGTGGACTTGCATCGT 60.667 55.0 0.00 0.00 30.16 3.73 F
6785 7731 0.179137 TGGCTCGAGTGATACTTGCG 60.179 55.0 15.13 0.00 29.55 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 2580 0.035056 GGAACCCCTGGATGACAGTG 60.035 60.000 0.00 0.0 46.06 3.66 R
2382 3045 0.586319 ACGTGAAATTCGCCAGTGTG 59.414 50.000 0.51 0.0 0.00 3.82 R
2606 3269 1.134551 GCTAGGCAAGTGGAGAGAAGG 60.135 57.143 0.00 0.0 0.00 3.46 R
3801 4474 1.274703 CCACTGCTGATACCACCCCT 61.275 60.000 0.00 0.0 0.00 4.79 R
5146 6005 1.541379 TGCTCGTAGACAAGTAGCCA 58.459 50.000 0.00 0.0 32.14 4.75 R
5531 6390 0.179067 AGTTCCGCGACAACCTCAAA 60.179 50.000 8.23 0.0 0.00 2.69 R
7141 10398 0.392461 TTGTCGCTCCAACCCTATGC 60.392 55.000 0.00 0.0 0.00 3.14 R
7931 11229 3.665745 ACAATTGTGTGGATTTCTGCC 57.334 42.857 11.07 0.0 36.31 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.053618 AGAGCTGCCACTTCGACTT 58.946 52.632 0.00 0.00 0.00 3.01
59 60 1.856265 GCACAGTGCACCCAACTAGC 61.856 60.000 21.22 4.77 44.26 3.42
73 74 2.047655 TAGCCGTTGGTGAAGCCG 60.048 61.111 0.00 0.00 41.21 5.52
89 97 1.133792 AGCCGTAATAAGCCATTGCCT 60.134 47.619 0.00 0.00 38.69 4.75
93 101 4.698304 GCCGTAATAAGCCATTGCCTAATA 59.302 41.667 0.00 0.00 38.69 0.98
117 125 0.836400 AAAGACCGAGCCTCCAAGGA 60.836 55.000 0.00 0.00 37.67 3.36
151 159 1.146358 GAAGCGACGAGTATGCCACC 61.146 60.000 0.00 0.00 0.00 4.61
156 164 1.076332 GACGAGTATGCCACCAACAC 58.924 55.000 0.00 0.00 0.00 3.32
163 171 4.912395 GCCACCAACACTGCCCCA 62.912 66.667 0.00 0.00 0.00 4.96
164 172 2.123511 CCACCAACACTGCCCCAA 60.124 61.111 0.00 0.00 0.00 4.12
168 176 1.760086 CCAACACTGCCCCAAACCA 60.760 57.895 0.00 0.00 0.00 3.67
170 178 0.104671 CAACACTGCCCCAAACCAAG 59.895 55.000 0.00 0.00 0.00 3.61
174 182 4.163463 TGCCCCAAACCAAGGCCA 62.163 61.111 5.01 0.00 46.55 5.36
183 191 3.128415 CCAAACCAAGGCCAAAAACTTTG 59.872 43.478 5.01 4.67 0.00 2.77
223 232 1.537202 AGACTCAATGACAAAAGCGGC 59.463 47.619 0.00 0.00 0.00 6.53
232 241 4.660938 AAAAGCGGCGAAGGGGCT 62.661 61.111 12.98 0.00 39.52 5.19
243 252 1.873903 CGAAGGGGCTCCATGATAACG 60.874 57.143 4.79 0.00 34.83 3.18
247 256 0.685097 GGGCTCCATGATAACGCCTA 59.315 55.000 0.00 0.00 40.52 3.93
253 262 2.888414 TCCATGATAACGCCTACATCGA 59.112 45.455 0.00 0.00 0.00 3.59
254 263 3.319689 TCCATGATAACGCCTACATCGAA 59.680 43.478 0.00 0.00 0.00 3.71
258 267 4.048504 TGATAACGCCTACATCGAATGTG 58.951 43.478 9.77 0.00 44.60 3.21
259 268 1.651987 AACGCCTACATCGAATGTGG 58.348 50.000 9.77 7.32 44.60 4.17
260 269 0.535335 ACGCCTACATCGAATGTGGT 59.465 50.000 9.77 0.00 44.60 4.16
261 270 1.209128 CGCCTACATCGAATGTGGTC 58.791 55.000 9.77 0.00 44.60 4.02
262 271 1.470805 CGCCTACATCGAATGTGGTCA 60.471 52.381 9.77 0.00 44.60 4.02
270 547 1.204704 TCGAATGTGGTCAGTGCTAGG 59.795 52.381 0.00 0.00 0.00 3.02
280 557 1.550524 TCAGTGCTAGGCTTTCACGAT 59.449 47.619 11.45 0.00 35.97 3.73
292 569 0.457853 TTCACGATAGCTCACCACGC 60.458 55.000 0.00 0.00 42.67 5.34
311 588 1.431488 CCCATCATCGCGACAACCTG 61.431 60.000 12.93 5.44 0.00 4.00
314 591 2.244117 ATCATCGCGACAACCTGCCT 62.244 55.000 12.93 0.00 0.00 4.75
355 632 2.383170 CGCAACAGCGTCATATGGT 58.617 52.632 2.13 0.00 46.13 3.55
376 653 1.815421 ATCTCGCCGCCAATGTCAC 60.815 57.895 0.00 0.00 0.00 3.67
378 655 4.321966 TCGCCGCCAATGTCACCA 62.322 61.111 0.00 0.00 0.00 4.17
385 662 0.749649 GCCAATGTCACCAAACACCA 59.250 50.000 0.00 0.00 30.55 4.17
388 666 2.364970 CCAATGTCACCAAACACCACAT 59.635 45.455 0.00 0.00 30.55 3.21
392 670 1.608590 GTCACCAAACACCACATCCAG 59.391 52.381 0.00 0.00 0.00 3.86
412 690 1.538634 GCAAGCAAACCAAGCATCACA 60.539 47.619 0.00 0.00 0.00 3.58
413 691 2.400399 CAAGCAAACCAAGCATCACAG 58.600 47.619 0.00 0.00 0.00 3.66
431 964 3.542742 GACACTTCGCGCCGCTAC 61.543 66.667 7.78 0.00 0.00 3.58
444 977 3.395669 GCTACGAACATGCGACCC 58.604 61.111 0.00 0.00 34.83 4.46
461 994 1.840650 CCCCCTCGATGCCAGATCT 60.841 63.158 0.00 0.00 0.00 2.75
466 999 2.279985 CGATGCCAGATCTGCGCT 60.280 61.111 26.29 16.83 0.00 5.92
504 1037 0.759060 ACTCCAAGCCCCACCAAAAC 60.759 55.000 0.00 0.00 0.00 2.43
507 1040 1.148027 TCCAAGCCCCACCAAAACATA 59.852 47.619 0.00 0.00 0.00 2.29
581 1145 5.227569 CCAAAAATTGGCTTTTACTCCCT 57.772 39.130 0.00 0.00 45.17 4.20
582 1146 5.237815 CCAAAAATTGGCTTTTACTCCCTC 58.762 41.667 0.00 0.00 45.17 4.30
583 1147 5.012046 CCAAAAATTGGCTTTTACTCCCTCT 59.988 40.000 0.00 0.00 45.17 3.69
584 1148 5.728637 AAAATTGGCTTTTACTCCCTCTG 57.271 39.130 0.00 0.00 35.27 3.35
585 1149 4.388577 AATTGGCTTTTACTCCCTCTGT 57.611 40.909 0.00 0.00 0.00 3.41
586 1150 3.876309 TTGGCTTTTACTCCCTCTGTT 57.124 42.857 0.00 0.00 0.00 3.16
587 1151 3.418684 TGGCTTTTACTCCCTCTGTTC 57.581 47.619 0.00 0.00 0.00 3.18
588 1152 2.039879 TGGCTTTTACTCCCTCTGTTCC 59.960 50.000 0.00 0.00 0.00 3.62
589 1153 2.039879 GGCTTTTACTCCCTCTGTTCCA 59.960 50.000 0.00 0.00 0.00 3.53
590 1154 3.497942 GGCTTTTACTCCCTCTGTTCCAA 60.498 47.826 0.00 0.00 0.00 3.53
591 1155 4.142038 GCTTTTACTCCCTCTGTTCCAAA 58.858 43.478 0.00 0.00 0.00 3.28
592 1156 4.583073 GCTTTTACTCCCTCTGTTCCAAAA 59.417 41.667 0.00 0.00 0.00 2.44
593 1157 5.243954 GCTTTTACTCCCTCTGTTCCAAAAT 59.756 40.000 0.00 0.00 0.00 1.82
594 1158 6.433093 GCTTTTACTCCCTCTGTTCCAAAATA 59.567 38.462 0.00 0.00 0.00 1.40
595 1159 7.362142 GCTTTTACTCCCTCTGTTCCAAAATAG 60.362 40.741 0.00 0.00 0.00 1.73
596 1160 6.945636 TTACTCCCTCTGTTCCAAAATAGA 57.054 37.500 0.00 0.00 32.42 1.98
597 1161 7.510675 TTACTCCCTCTGTTCCAAAATAGAT 57.489 36.000 0.00 0.00 32.88 1.98
598 1162 5.749462 ACTCCCTCTGTTCCAAAATAGATG 58.251 41.667 0.00 0.00 32.88 2.90
599 1163 5.488919 ACTCCCTCTGTTCCAAAATAGATGA 59.511 40.000 0.00 0.00 32.88 2.92
600 1164 5.745227 TCCCTCTGTTCCAAAATAGATGAC 58.255 41.667 0.00 0.00 32.88 3.06
601 1165 4.884164 CCCTCTGTTCCAAAATAGATGACC 59.116 45.833 0.00 0.00 32.88 4.02
602 1166 4.884164 CCTCTGTTCCAAAATAGATGACCC 59.116 45.833 0.00 0.00 32.88 4.46
603 1167 5.500234 CTCTGTTCCAAAATAGATGACCCA 58.500 41.667 0.00 0.00 32.88 4.51
604 1168 5.886609 TCTGTTCCAAAATAGATGACCCAA 58.113 37.500 0.00 0.00 28.72 4.12
605 1169 5.710099 TCTGTTCCAAAATAGATGACCCAAC 59.290 40.000 0.00 0.00 28.72 3.77
606 1170 5.640147 TGTTCCAAAATAGATGACCCAACT 58.360 37.500 0.00 0.00 0.00 3.16
607 1171 6.074648 TGTTCCAAAATAGATGACCCAACTT 58.925 36.000 0.00 0.00 0.00 2.66
608 1172 6.553100 TGTTCCAAAATAGATGACCCAACTTT 59.447 34.615 0.00 0.00 0.00 2.66
609 1173 7.726291 TGTTCCAAAATAGATGACCCAACTTTA 59.274 33.333 0.00 0.00 0.00 1.85
610 1174 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
611 1175 8.893563 TCCAAAATAGATGACCCAACTTTATT 57.106 30.769 0.00 0.00 0.00 1.40
612 1176 8.748412 TCCAAAATAGATGACCCAACTTTATTG 58.252 33.333 0.00 0.00 0.00 1.90
613 1177 7.981225 CCAAAATAGATGACCCAACTTTATTGG 59.019 37.037 0.00 0.00 39.25 3.16
632 1196 8.671384 TTATTGGGTCATCTATTTTAGAACGG 57.329 34.615 0.00 0.00 38.50 4.44
633 1197 5.943349 TGGGTCATCTATTTTAGAACGGA 57.057 39.130 0.00 0.00 38.50 4.69
634 1198 5.914033 TGGGTCATCTATTTTAGAACGGAG 58.086 41.667 0.00 0.00 38.50 4.63
635 1199 5.163343 TGGGTCATCTATTTTAGAACGGAGG 60.163 44.000 0.00 0.00 38.50 4.30
636 1200 5.298347 GGTCATCTATTTTAGAACGGAGGG 58.702 45.833 0.00 0.00 38.50 4.30
637 1201 5.070047 GGTCATCTATTTTAGAACGGAGGGA 59.930 44.000 0.00 0.00 38.50 4.20
638 1202 6.217294 GTCATCTATTTTAGAACGGAGGGAG 58.783 44.000 0.00 0.00 38.50 4.30
660 1224 3.896648 ACGTGACATGGAAATCAACAC 57.103 42.857 0.00 0.00 0.00 3.32
664 1232 2.890311 TGACATGGAAATCAACACCACC 59.110 45.455 0.00 0.00 36.49 4.61
665 1233 2.231235 GACATGGAAATCAACACCACCC 59.769 50.000 0.00 0.00 36.49 4.61
666 1234 2.246469 CATGGAAATCAACACCACCCA 58.754 47.619 0.00 0.00 36.49 4.51
667 1235 1.698506 TGGAAATCAACACCACCCAC 58.301 50.000 0.00 0.00 0.00 4.61
668 1236 1.216678 TGGAAATCAACACCACCCACT 59.783 47.619 0.00 0.00 0.00 4.00
669 1237 1.886542 GGAAATCAACACCACCCACTC 59.113 52.381 0.00 0.00 0.00 3.51
720 1288 7.478322 AGCACAGCATTTTTCTATGTTATCAG 58.522 34.615 0.00 0.00 0.00 2.90
732 1300 0.108138 GTTATCAGCGACCCTGTGCT 60.108 55.000 0.00 0.00 42.38 4.40
743 1311 0.825010 CCCTGTGCTGCAAAAGGAGT 60.825 55.000 26.18 0.00 30.92 3.85
776 1344 5.244402 CCATGCCATGCCTAATTAAAGATCA 59.756 40.000 0.00 0.00 0.00 2.92
795 1363 0.251341 AAGCCACAGCCCTACCTTTG 60.251 55.000 0.00 0.00 41.25 2.77
955 1533 7.113684 CGCAAAATAAGTTCAAATAAACCACGA 59.886 33.333 0.00 0.00 0.00 4.35
991 1574 2.026822 TCTTGTCCTCTTGCTCATTCCC 60.027 50.000 0.00 0.00 0.00 3.97
1111 1700 2.613482 GGTCCCCAGTCCCCTTTCC 61.613 68.421 0.00 0.00 0.00 3.13
1182 1774 1.257743 CGTCCCTGTCCTCTTTCTCA 58.742 55.000 0.00 0.00 0.00 3.27
1289 1882 1.731613 GCAGTTTTAAACGCGCCCC 60.732 57.895 5.73 0.00 36.23 5.80
1290 1883 1.441349 CAGTTTTAAACGCGCCCCG 60.441 57.895 5.73 0.00 44.21 5.73
1291 1884 2.126773 GTTTTAAACGCGCCCCGG 60.127 61.111 5.73 0.00 42.52 5.73
1326 1927 4.299547 TCGCACTGCTCGCTGGTT 62.300 61.111 0.00 0.00 0.00 3.67
1413 2027 0.872021 CGGCGAGAATCTGCAGGTAC 60.872 60.000 15.13 5.39 36.59 3.34
1418 2032 0.824759 AGAATCTGCAGGTACCCGAC 59.175 55.000 15.13 0.00 0.00 4.79
1512 2131 4.446413 CTTTCGGGGGACGGACGG 62.446 72.222 0.00 0.00 44.45 4.79
1560 2180 1.668793 CGGCCCGTTTTCCGTTACT 60.669 57.895 0.00 0.00 40.72 2.24
1762 2393 4.337555 CAGAGGATTGATTTGTCCATGGAC 59.662 45.833 33.97 33.97 44.77 4.02
1930 2574 5.422331 CAGAATCCTTCTTGGTCCAGTAGTA 59.578 44.000 0.00 0.00 38.11 1.82
1932 2576 4.399483 TCCTTCTTGGTCCAGTAGTAGT 57.601 45.455 0.00 0.00 37.07 2.73
1934 2578 4.527038 TCCTTCTTGGTCCAGTAGTAGTTG 59.473 45.833 0.00 0.00 37.07 3.16
1936 2580 2.565834 TCTTGGTCCAGTAGTAGTTGGC 59.434 50.000 0.00 0.00 34.38 4.52
2010 2654 1.182667 TGTCCTGTAGTACTGCGCAT 58.817 50.000 12.24 3.79 0.00 4.73
2048 2695 6.851609 TGCGTGGGATAATGCAAATATTATC 58.148 36.000 8.63 8.63 44.03 1.75
2235 2897 0.603707 CGCGGCATCCAATATCACCT 60.604 55.000 0.00 0.00 0.00 4.00
2254 2916 4.512944 CACCTCCATGTATGTGATTAGTGC 59.487 45.833 0.00 0.00 0.00 4.40
2283 2945 5.456822 GTGTTGTTGCTTGATTTTCTCTGTC 59.543 40.000 0.00 0.00 0.00 3.51
2360 3023 7.743116 TGGGTAGAACTCTCAATGGTATAAA 57.257 36.000 0.00 0.00 0.00 1.40
2382 3045 1.002502 GGGTGGACAGCTGGGTAAC 60.003 63.158 19.93 10.34 0.00 2.50
2400 3063 0.586319 ACACACTGGCGAATTTCACG 59.414 50.000 0.00 0.00 0.00 4.35
2442 3105 0.038166 ATCGCATGTGGAGTTTGGGT 59.962 50.000 6.39 0.00 0.00 4.51
2468 3131 4.674362 GCGCTTTATTTGGTCCTAAACTGG 60.674 45.833 0.00 0.00 0.00 4.00
2503 3166 4.814234 TGAGTCGTTGCATAACACTTCTTT 59.186 37.500 0.00 0.00 36.58 2.52
2531 3194 4.136796 TGCAGAGAACTTAGCAACAACAT 58.863 39.130 0.00 0.00 33.48 2.71
2606 3269 1.202222 CCATTCGAGCATTCTGTTGCC 60.202 52.381 0.00 0.00 43.83 4.52
2622 3286 1.377856 GCCCTTCTCTCCACTTGCC 60.378 63.158 0.00 0.00 0.00 4.52
2853 3517 1.203441 AGGTCCCTCAGCAGCAATCA 61.203 55.000 0.00 0.00 0.00 2.57
2863 3527 2.490509 CAGCAGCAATCATTTGTCTGGA 59.509 45.455 0.00 0.00 37.41 3.86
2866 3530 3.181499 GCAGCAATCATTTGTCTGGAGAG 60.181 47.826 10.13 0.00 37.41 3.20
2893 3557 4.095483 CCAGATGTATTTTCAGCACTCACC 59.905 45.833 0.00 0.00 0.00 4.02
2933 3597 2.924290 GAGCGCGTTGACTTCTCTAATT 59.076 45.455 8.43 0.00 0.00 1.40
2958 3622 8.554835 TGTTTACATGCTAGCATTAGTTGTTA 57.445 30.769 27.59 14.44 33.90 2.41
2966 3630 6.074005 GCTAGCATTAGTTGTTATTCGATGC 58.926 40.000 10.63 0.00 38.84 3.91
2968 3632 6.292389 AGCATTAGTTGTTATTCGATGCTC 57.708 37.500 2.38 0.00 43.59 4.26
3096 3760 5.017093 ACCCTGTGAGTATCTATGCCTAT 57.983 43.478 0.00 0.00 34.92 2.57
3097 3761 5.407049 ACCCTGTGAGTATCTATGCCTATT 58.593 41.667 0.00 0.00 34.92 1.73
3101 3765 6.587990 CCTGTGAGTATCTATGCCTATTTTCG 59.412 42.308 0.00 0.00 34.92 3.46
3113 3777 6.811253 TGCCTATTTTCGTTGATAAAGTGT 57.189 33.333 0.00 0.00 0.00 3.55
3127 3791 6.052360 TGATAAAGTGTGCTAGTGTCAAACA 58.948 36.000 0.00 0.00 0.00 2.83
3132 3796 4.700213 AGTGTGCTAGTGTCAAACAACTTT 59.300 37.500 0.00 0.00 0.00 2.66
3134 3798 6.373216 AGTGTGCTAGTGTCAAACAACTTTAA 59.627 34.615 0.00 0.00 0.00 1.52
3179 3843 8.800332 AGGCATATTCAAGACAATCAAATATCC 58.200 33.333 0.00 0.00 0.00 2.59
3189 3853 1.136828 TCAAATATCCGGGACCCTGG 58.863 55.000 9.41 11.85 43.69 4.45
3311 3980 7.591821 AGATTACTCCCTCTCTCTGATAACTT 58.408 38.462 0.00 0.00 0.00 2.66
3413 4085 6.829229 TCAGTAAGACACTCCTTTATCGAA 57.171 37.500 0.00 0.00 34.26 3.71
3454 4127 4.323417 TGTGTTTGTATGCCTCTAGTTGG 58.677 43.478 0.00 0.00 0.00 3.77
3466 4139 6.143915 TGCCTCTAGTTGGGAATATTAGAGT 58.856 40.000 7.88 0.00 36.97 3.24
3596 4269 4.216257 GCTGACAAAATTTGCTCTCCTACA 59.784 41.667 5.52 0.00 0.00 2.74
3742 4415 4.427312 GCCTGATGTGACAAATGGAAATC 58.573 43.478 0.00 0.00 0.00 2.17
3786 4459 6.481954 ACTATTTGGACAGTCAAATTCGTC 57.518 37.500 13.05 0.00 42.63 4.20
3801 4474 7.009815 GTCAAATTCGTCGGATACATTCTTGTA 59.990 37.037 0.00 0.00 42.35 2.41
3881 4554 5.952347 ACAAAGAAAGGAAGTCAAAGAAGGT 59.048 36.000 0.00 0.00 0.00 3.50
3883 4556 7.780271 ACAAAGAAAGGAAGTCAAAGAAGGTAT 59.220 33.333 0.00 0.00 0.00 2.73
4030 4703 5.791141 ACTGTAGGGAAAGGTCCTAATTCTT 59.209 40.000 0.00 0.00 44.28 2.52
4237 5079 5.336690 CCCCCTACTGACATGTGAATTTTTG 60.337 44.000 1.15 0.00 0.00 2.44
4238 5080 5.476599 CCCCTACTGACATGTGAATTTTTGA 59.523 40.000 1.15 0.00 0.00 2.69
4417 5274 3.394836 GCCAGTCCTCGGCTCCTT 61.395 66.667 0.00 0.00 46.56 3.36
4425 5282 1.736586 CTCGGCTCCTTGCGTCTAT 59.263 57.895 0.00 0.00 44.05 1.98
4480 5337 6.414732 ACAGCTCCTAATGTTGCTTATAACA 58.585 36.000 0.00 0.00 43.93 2.41
4509 5366 6.562608 AGGAAAGGGAGGCTACATTATATTCA 59.437 38.462 0.00 0.00 0.00 2.57
4589 5446 6.610075 ATGAAGGTTAACCAAAATGCTGAT 57.390 33.333 26.26 0.00 38.89 2.90
4631 5488 5.220970 GGTGATCACGAAGAAACAAAAGGAA 60.221 40.000 19.33 0.00 0.00 3.36
4717 5574 0.452784 GCGCTGCGTACTGAAAAAGG 60.453 55.000 24.04 0.00 0.00 3.11
4766 5623 3.277416 AAGGGGAGAGTACCTTCACTT 57.723 47.619 2.25 2.25 43.38 3.16
4889 5746 6.119536 CAGGTTTGGTAAAGTATATCTGGCA 58.880 40.000 0.00 0.00 0.00 4.92
4923 5780 7.458397 TGATGGAGAGGTACACACTTTAAAAT 58.542 34.615 0.00 0.00 0.00 1.82
5146 6005 0.882042 CTGTGCGGAGTTTGAGCAGT 60.882 55.000 0.00 0.00 41.93 4.40
5312 6171 9.860898 AATAATTGCTGTAAATTTTCTGACTCC 57.139 29.630 0.00 0.00 32.16 3.85
5478 6337 0.667487 CGAGTGTGGACTTGCATCGT 60.667 55.000 0.00 0.00 30.16 3.73
5551 6410 0.675083 TTGAGGTTGTCGCGGAACTA 59.325 50.000 17.62 0.60 0.00 2.24
5725 6585 5.948162 GGCATGGGCTGGATTATATATATGG 59.052 44.000 5.44 0.00 40.87 2.74
5789 6649 8.534333 ACCTAAATGCACTACATATATGTTCG 57.466 34.615 22.90 16.18 41.97 3.95
5884 6829 3.211045 TCGTGCCTTTATATCCTTTGGC 58.789 45.455 0.00 0.00 40.62 4.52
5898 6843 1.952296 CTTTGGCTGCTGTTCTTCTGT 59.048 47.619 0.00 0.00 0.00 3.41
5918 6863 8.871629 TTCTGTCTAGTCTAAAGATTCTCTGT 57.128 34.615 0.00 0.00 0.00 3.41
5942 6887 9.753674 TGTGAAATTTAGGATTTGGAAGAGTAT 57.246 29.630 0.00 0.00 0.00 2.12
6163 7108 0.584876 GCGACGTTTACAGCTTTGGT 59.415 50.000 0.00 0.00 0.00 3.67
6196 7141 3.005472 TGGAACTTCTAACAGGACGTGAG 59.995 47.826 0.00 0.00 0.00 3.51
6228 7173 0.756442 TAAGCAATCCCCATGCCAGC 60.756 55.000 0.00 0.00 44.91 4.85
6241 7186 1.604604 TGCCAGCTACTTTTCACACC 58.395 50.000 0.00 0.00 0.00 4.16
6294 7239 7.831691 TGAGTTCCCATGAATTTGAACTTAA 57.168 32.000 5.35 0.00 45.39 1.85
6295 7240 8.421249 TGAGTTCCCATGAATTTGAACTTAAT 57.579 30.769 5.35 0.00 45.39 1.40
6396 7341 8.866970 TCAGCTTTATGATATTGATGCCATAA 57.133 30.769 0.00 0.00 31.83 1.90
6596 7542 2.042162 AGAATTCAGGCCACCAATGTCT 59.958 45.455 5.01 3.43 0.00 3.41
6638 7584 3.728267 TATGGTCAGCGACGCGACG 62.728 63.158 25.73 25.73 34.70 5.12
6647 7593 2.126424 GACGCGACGAAGGCTTCT 60.126 61.111 23.74 11.67 0.00 2.85
6680 7626 1.478510 TCCTGAGACGAGGAAGAATGC 59.521 52.381 0.00 0.00 39.32 3.56
6703 7649 3.665323 CGAAGCCTGTCACAGAAAATTCG 60.665 47.826 6.30 11.99 32.44 3.34
6710 7656 3.994392 TGTCACAGAAAATTCGAGTAGGC 59.006 43.478 0.00 0.00 0.00 3.93
6711 7657 3.060895 GTCACAGAAAATTCGAGTAGGCG 59.939 47.826 0.00 0.00 0.00 5.52
6712 7658 2.000447 ACAGAAAATTCGAGTAGGCGC 59.000 47.619 0.00 0.00 0.00 6.53
6713 7659 1.327764 CAGAAAATTCGAGTAGGCGCC 59.672 52.381 21.89 21.89 0.00 6.53
6714 7660 1.207329 AGAAAATTCGAGTAGGCGCCT 59.793 47.619 34.85 34.85 0.00 5.52
6715 7661 1.327764 GAAAATTCGAGTAGGCGCCTG 59.672 52.381 38.98 22.19 0.00 4.85
6716 7662 0.462047 AAATTCGAGTAGGCGCCTGG 60.462 55.000 38.98 23.45 0.00 4.45
6717 7663 1.614241 AATTCGAGTAGGCGCCTGGT 61.614 55.000 38.98 25.29 0.00 4.00
6718 7664 2.298158 ATTCGAGTAGGCGCCTGGTG 62.298 60.000 38.98 23.99 0.00 4.17
6719 7665 3.449227 CGAGTAGGCGCCTGGTGA 61.449 66.667 38.98 16.96 0.00 4.02
6720 7666 2.496817 GAGTAGGCGCCTGGTGAG 59.503 66.667 38.98 0.00 0.00 3.51
6721 7667 3.077556 AGTAGGCGCCTGGTGAGG 61.078 66.667 38.98 0.00 43.19 3.86
6722 7668 4.162690 GTAGGCGCCTGGTGAGGG 62.163 72.222 38.98 0.00 40.19 4.30
6755 7701 0.532573 TGCCGTTAGGAGAGCTTCTG 59.467 55.000 0.00 0.00 41.02 3.02
6780 7726 3.986572 CAGATTCATGGCTCGAGTGATAC 59.013 47.826 15.13 7.20 0.00 2.24
6785 7731 0.179137 TGGCTCGAGTGATACTTGCG 60.179 55.000 15.13 0.00 29.55 4.85
7015 10269 8.512138 GTTTGCCATGTTATTTAGTCTGTAGTT 58.488 33.333 0.00 0.00 0.00 2.24
7018 10272 7.880713 TGCCATGTTATTTAGTCTGTAGTTTCA 59.119 33.333 0.00 0.00 0.00 2.69
7019 10273 8.726988 GCCATGTTATTTAGTCTGTAGTTTCAA 58.273 33.333 0.00 0.00 0.00 2.69
7070 10324 3.308402 GGTTCTCCAGATCATTTGTGGGA 60.308 47.826 0.00 0.00 31.70 4.37
7076 10330 3.539604 CAGATCATTTGTGGGACCTCTC 58.460 50.000 0.00 0.00 0.00 3.20
7079 10333 1.003580 TCATTTGTGGGACCTCTCTGC 59.996 52.381 0.00 0.00 0.00 4.26
7109 10363 7.092716 CAGGATTTTGAAAACACAGGAATAGG 58.907 38.462 0.00 0.00 0.00 2.57
7114 10369 8.710835 TTTTGAAAACACAGGAATAGGAAAAC 57.289 30.769 0.00 0.00 0.00 2.43
7125 10382 8.923270 ACAGGAATAGGAAAACTGATTTTGAAA 58.077 29.630 0.00 0.00 38.17 2.69
7133 10390 8.882736 AGGAAAACTGATTTTGAAAACATGAAC 58.117 29.630 0.00 0.00 38.17 3.18
7140 10397 9.910511 CTGATTTTGAAAACATGAACAAGAAAG 57.089 29.630 0.00 0.00 0.00 2.62
7141 10398 8.881743 TGATTTTGAAAACATGAACAAGAAAGG 58.118 29.630 0.00 0.00 0.00 3.11
7142 10399 6.660887 TTTGAAAACATGAACAAGAAAGGC 57.339 33.333 0.00 0.00 0.00 4.35
7148 10405 4.019174 ACATGAACAAGAAAGGCATAGGG 58.981 43.478 0.00 0.00 0.00 3.53
7155 10412 1.064389 AGAAAGGCATAGGGTTGGAGC 60.064 52.381 0.00 0.00 0.00 4.70
7160 10417 0.392461 GCATAGGGTTGGAGCGACAA 60.392 55.000 0.00 0.00 0.00 3.18
7161 10418 1.656652 CATAGGGTTGGAGCGACAAG 58.343 55.000 0.00 0.00 0.00 3.16
7173 10430 2.368655 GCGACAAGCCCATTTGAATT 57.631 45.000 0.00 0.00 40.81 2.17
7184 10447 9.264719 CAAGCCCATTTGAATTTTATAGGATTC 57.735 33.333 4.17 4.17 33.83 2.52
7185 10448 8.551682 AGCCCATTTGAATTTTATAGGATTCA 57.448 30.769 8.11 8.11 39.71 2.57
7202 10465 6.725364 AGGATTCATAAGGAGTGTTTGATGT 58.275 36.000 0.00 0.00 0.00 3.06
7207 10470 1.238439 AGGAGTGTTTGATGTTGCCG 58.762 50.000 0.00 0.00 0.00 5.69
7208 10471 0.951558 GGAGTGTTTGATGTTGCCGT 59.048 50.000 0.00 0.00 0.00 5.68
7217 10480 2.803451 TGATGTTGCCGTGTGAAAAAC 58.197 42.857 0.00 0.00 0.00 2.43
7222 10485 3.246619 GTTGCCGTGTGAAAAACAAAGA 58.753 40.909 0.00 0.00 41.57 2.52
7587 10871 6.722129 TGCCTATTAGGTTTGGTTTGTGTAAT 59.278 34.615 11.38 0.00 37.80 1.89
7588 10872 7.233757 TGCCTATTAGGTTTGGTTTGTGTAATT 59.766 33.333 11.38 0.00 37.80 1.40
7589 10873 8.092068 GCCTATTAGGTTTGGTTTGTGTAATTT 58.908 33.333 11.38 0.00 37.80 1.82
7590 10874 9.990360 CCTATTAGGTTTGGTTTGTGTAATTTT 57.010 29.630 1.17 0.00 0.00 1.82
7643 10930 7.624360 CACCTTTAGTGCTACATATGGAAAA 57.376 36.000 7.80 0.00 40.28 2.29
7673 10960 4.727792 TCATCATTGATGGGGCTATTGA 57.272 40.909 23.07 2.25 40.15 2.57
7721 11009 6.859017 TCAGAACGTTATGCACTTGAGTATA 58.141 36.000 17.86 0.00 0.00 1.47
8066 11370 9.986833 CAAAATTATTTATAGCAAAACCAAGCC 57.013 29.630 0.00 0.00 0.00 4.35
8071 11375 3.615224 ATAGCAAAACCAAGCCAATGG 57.385 42.857 0.00 0.00 46.38 3.16
8101 11405 9.943163 ACCAAACAACAATGCAAAATTATTAAC 57.057 25.926 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.320247 CAAGTCGAAGTGGCAGCTCT 60.320 55.000 0.00 0.00 0.00 4.09
12 13 1.805943 CATGACCAATGTGCAAGTCGA 59.194 47.619 0.00 0.00 31.75 4.20
18 19 1.983481 GGCCCATGACCAATGTGCA 60.983 57.895 0.00 0.00 41.06 4.57
44 45 2.052047 AACGGCTAGTTGGGTGCACT 62.052 55.000 17.98 0.00 42.39 4.40
45 46 1.599797 AACGGCTAGTTGGGTGCAC 60.600 57.895 8.80 8.80 42.39 4.57
54 55 1.003718 GGCTTCACCAACGGCTAGT 60.004 57.895 0.00 0.00 38.86 2.57
59 60 2.012937 TATTACGGCTTCACCAACGG 57.987 50.000 0.00 0.00 39.03 4.44
73 74 7.979444 TCACTATTAGGCAATGGCTTATTAC 57.021 36.000 16.12 0.00 39.70 1.89
89 97 4.142004 GGAGGCTCGGTCTTTTCACTATTA 60.142 45.833 8.69 0.00 0.00 0.98
93 101 0.321996 GGAGGCTCGGTCTTTTCACT 59.678 55.000 8.69 0.00 0.00 3.41
151 159 0.104671 CTTGGTTTGGGGCAGTGTTG 59.895 55.000 0.00 0.00 0.00 3.33
156 164 3.313524 GGCCTTGGTTTGGGGCAG 61.314 66.667 0.00 0.00 46.87 4.85
163 171 3.245087 ACCAAAGTTTTTGGCCTTGGTTT 60.245 39.130 15.61 0.91 43.23 3.27
164 172 2.307392 ACCAAAGTTTTTGGCCTTGGTT 59.693 40.909 15.61 3.13 43.23 3.67
183 191 2.417586 CTCGTTTATCGGGGTCAAAACC 59.582 50.000 0.00 0.00 40.62 3.27
189 197 1.747355 TGAGTCTCGTTTATCGGGGTC 59.253 52.381 0.00 0.00 40.91 4.46
194 202 6.389622 TTTGTCATTGAGTCTCGTTTATCG 57.610 37.500 0.00 0.00 41.41 2.92
223 232 1.873903 CGTTATCATGGAGCCCCTTCG 60.874 57.143 0.00 0.00 0.00 3.79
232 241 2.888414 TCGATGTAGGCGTTATCATGGA 59.112 45.455 0.00 0.00 0.00 3.41
236 245 4.048504 CACATTCGATGTAGGCGTTATCA 58.951 43.478 0.00 0.00 42.70 2.15
243 252 2.205074 CTGACCACATTCGATGTAGGC 58.795 52.381 0.00 0.00 42.70 3.93
247 256 1.002430 AGCACTGACCACATTCGATGT 59.998 47.619 0.00 0.00 46.22 3.06
253 262 0.987294 AGCCTAGCACTGACCACATT 59.013 50.000 0.00 0.00 0.00 2.71
254 263 0.987294 AAGCCTAGCACTGACCACAT 59.013 50.000 0.00 0.00 0.00 3.21
258 267 1.443802 GTGAAAGCCTAGCACTGACC 58.556 55.000 0.00 0.00 0.00 4.02
259 268 1.071605 CGTGAAAGCCTAGCACTGAC 58.928 55.000 0.00 0.00 0.00 3.51
260 269 0.966179 TCGTGAAAGCCTAGCACTGA 59.034 50.000 0.00 0.00 0.00 3.41
261 270 2.015736 ATCGTGAAAGCCTAGCACTG 57.984 50.000 0.00 0.00 0.00 3.66
262 271 2.482142 GCTATCGTGAAAGCCTAGCACT 60.482 50.000 0.00 0.00 35.88 4.40
270 547 1.661112 GTGGTGAGCTATCGTGAAAGC 59.339 52.381 0.00 0.00 39.08 3.51
280 557 1.337384 ATGATGGGCGTGGTGAGCTA 61.337 55.000 0.00 0.00 34.52 3.32
292 569 1.153369 AGGTTGTCGCGATGATGGG 60.153 57.895 14.06 0.00 0.00 4.00
311 588 1.154197 GTGGTGACGGTTCTTTAGGC 58.846 55.000 0.00 0.00 0.00 3.93
314 591 0.033781 CGGGTGGTGACGGTTCTTTA 59.966 55.000 0.00 0.00 0.00 1.85
344 621 0.786581 CGAGATGCACCATATGACGC 59.213 55.000 3.65 6.82 0.00 5.19
376 653 1.000060 CTTGCTGGATGTGGTGTTTGG 60.000 52.381 0.00 0.00 0.00 3.28
378 655 0.675633 GCTTGCTGGATGTGGTGTTT 59.324 50.000 0.00 0.00 0.00 2.83
385 662 1.342174 CTTGGTTTGCTTGCTGGATGT 59.658 47.619 0.00 0.00 0.00 3.06
388 666 1.042003 TGCTTGGTTTGCTTGCTGGA 61.042 50.000 0.00 0.00 0.00 3.86
392 670 1.142474 GTGATGCTTGGTTTGCTTGC 58.858 50.000 0.00 0.00 0.00 4.01
413 691 4.789075 TAGCGGCGCGAAGTGTCC 62.789 66.667 27.59 0.00 40.99 4.02
428 961 1.520787 GGGGGTCGCATGTTCGTAG 60.521 63.158 0.00 0.00 0.00 3.51
443 976 1.840650 AGATCTGGCATCGAGGGGG 60.841 63.158 0.00 0.00 0.00 5.40
444 977 1.370437 CAGATCTGGCATCGAGGGG 59.630 63.158 15.38 0.00 0.00 4.79
449 982 1.006922 TAGCGCAGATCTGGCATCG 60.007 57.895 27.31 21.28 31.93 3.84
461 994 2.629617 TCTGATCATTCATCCTAGCGCA 59.370 45.455 11.47 0.00 0.00 6.09
466 999 5.662657 TGGAGTTGTCTGATCATTCATCCTA 59.337 40.000 14.99 5.54 0.00 2.94
528 1061 9.466497 TTGGAAGCATATGAACTTATCTTCTTT 57.534 29.630 6.97 0.00 31.77 2.52
536 1069 5.437060 GGACCTTGGAAGCATATGAACTTA 58.563 41.667 6.97 0.00 0.00 2.24
547 1080 3.402110 CAATTTTTGGGACCTTGGAAGC 58.598 45.455 0.00 0.00 0.00 3.86
573 1137 6.945636 TCTATTTTGGAACAGAGGGAGTAA 57.054 37.500 0.00 0.00 42.39 2.24
574 1138 6.672218 TCATCTATTTTGGAACAGAGGGAGTA 59.328 38.462 0.00 0.00 42.39 2.59
575 1139 5.488919 TCATCTATTTTGGAACAGAGGGAGT 59.511 40.000 0.00 0.00 42.39 3.85
576 1140 5.819901 GTCATCTATTTTGGAACAGAGGGAG 59.180 44.000 0.00 0.00 42.39 4.30
577 1141 5.339200 GGTCATCTATTTTGGAACAGAGGGA 60.339 44.000 0.00 0.00 42.39 4.20
578 1142 4.884164 GGTCATCTATTTTGGAACAGAGGG 59.116 45.833 0.00 0.00 42.39 4.30
579 1143 4.884164 GGGTCATCTATTTTGGAACAGAGG 59.116 45.833 0.00 0.00 42.39 3.69
580 1144 5.500234 TGGGTCATCTATTTTGGAACAGAG 58.500 41.667 0.00 0.00 42.39 3.35
581 1145 5.512942 TGGGTCATCTATTTTGGAACAGA 57.487 39.130 0.00 0.00 42.39 3.41
582 1146 5.711976 AGTTGGGTCATCTATTTTGGAACAG 59.288 40.000 0.00 0.00 42.39 3.16
583 1147 5.640147 AGTTGGGTCATCTATTTTGGAACA 58.360 37.500 0.00 0.00 0.00 3.18
584 1148 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
585 1149 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
586 1150 8.748412 CAATAAAGTTGGGTCATCTATTTTGGA 58.252 33.333 0.00 0.00 0.00 3.53
587 1151 7.981225 CCAATAAAGTTGGGTCATCTATTTTGG 59.019 37.037 0.00 0.00 35.96 3.28
588 1152 8.931385 CCAATAAAGTTGGGTCATCTATTTTG 57.069 34.615 0.00 0.00 35.96 2.44
606 1170 9.116067 CCGTTCTAAAATAGATGACCCAATAAA 57.884 33.333 0.00 0.00 34.22 1.40
607 1171 8.487848 TCCGTTCTAAAATAGATGACCCAATAA 58.512 33.333 0.00 0.00 34.22 1.40
608 1172 8.025270 TCCGTTCTAAAATAGATGACCCAATA 57.975 34.615 0.00 0.00 34.22 1.90
609 1173 6.895782 TCCGTTCTAAAATAGATGACCCAAT 58.104 36.000 0.00 0.00 34.22 3.16
610 1174 6.302535 TCCGTTCTAAAATAGATGACCCAA 57.697 37.500 0.00 0.00 34.22 4.12
611 1175 5.163343 CCTCCGTTCTAAAATAGATGACCCA 60.163 44.000 0.00 0.00 34.22 4.51
612 1176 5.298347 CCTCCGTTCTAAAATAGATGACCC 58.702 45.833 0.00 0.00 34.22 4.46
613 1177 5.070047 TCCCTCCGTTCTAAAATAGATGACC 59.930 44.000 0.00 0.00 34.22 4.02
614 1178 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
615 1179 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
616 1180 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
617 1181 6.016443 CGTACTCCCTCCGTTCTAAAATAGAT 60.016 42.308 0.00 0.00 34.22 1.98
618 1182 5.297776 CGTACTCCCTCCGTTCTAAAATAGA 59.702 44.000 0.00 0.00 0.00 1.98
619 1183 5.067023 ACGTACTCCCTCCGTTCTAAAATAG 59.933 44.000 0.00 0.00 0.00 1.73
620 1184 4.949856 ACGTACTCCCTCCGTTCTAAAATA 59.050 41.667 0.00 0.00 0.00 1.40
621 1185 3.766051 ACGTACTCCCTCCGTTCTAAAAT 59.234 43.478 0.00 0.00 0.00 1.82
622 1186 3.057315 CACGTACTCCCTCCGTTCTAAAA 60.057 47.826 0.00 0.00 31.46 1.52
623 1187 2.489329 CACGTACTCCCTCCGTTCTAAA 59.511 50.000 0.00 0.00 31.46 1.85
624 1188 2.086869 CACGTACTCCCTCCGTTCTAA 58.913 52.381 0.00 0.00 31.46 2.10
625 1189 1.278985 TCACGTACTCCCTCCGTTCTA 59.721 52.381 0.00 0.00 31.46 2.10
626 1190 0.037303 TCACGTACTCCCTCCGTTCT 59.963 55.000 0.00 0.00 31.46 3.01
627 1191 0.169894 GTCACGTACTCCCTCCGTTC 59.830 60.000 0.00 0.00 31.46 3.95
628 1192 0.538057 TGTCACGTACTCCCTCCGTT 60.538 55.000 0.00 0.00 31.46 4.44
629 1193 0.323178 ATGTCACGTACTCCCTCCGT 60.323 55.000 0.00 0.00 34.71 4.69
630 1194 0.100682 CATGTCACGTACTCCCTCCG 59.899 60.000 0.00 0.00 0.00 4.63
631 1195 0.460311 CCATGTCACGTACTCCCTCC 59.540 60.000 0.00 0.00 0.00 4.30
632 1196 1.471119 TCCATGTCACGTACTCCCTC 58.529 55.000 0.00 0.00 0.00 4.30
633 1197 1.933021 TTCCATGTCACGTACTCCCT 58.067 50.000 0.00 0.00 0.00 4.20
634 1198 2.754946 TTTCCATGTCACGTACTCCC 57.245 50.000 0.00 0.00 0.00 4.30
635 1199 3.857052 TGATTTCCATGTCACGTACTCC 58.143 45.455 0.00 0.00 0.00 3.85
636 1200 4.688879 TGTTGATTTCCATGTCACGTACTC 59.311 41.667 0.00 0.00 0.00 2.59
637 1201 4.451096 GTGTTGATTTCCATGTCACGTACT 59.549 41.667 0.00 0.00 0.00 2.73
638 1202 4.378046 GGTGTTGATTTCCATGTCACGTAC 60.378 45.833 0.00 0.00 0.00 3.67
660 1224 1.134098 GTGTGGATATGGAGTGGGTGG 60.134 57.143 0.00 0.00 0.00 4.61
664 1232 3.069586 ACGTATGTGTGGATATGGAGTGG 59.930 47.826 0.00 0.00 0.00 4.00
665 1233 4.322080 ACGTATGTGTGGATATGGAGTG 57.678 45.455 0.00 0.00 0.00 3.51
666 1234 5.138276 ACTACGTATGTGTGGATATGGAGT 58.862 41.667 0.00 0.00 35.10 3.85
667 1235 5.617087 CGACTACGTATGTGTGGATATGGAG 60.617 48.000 0.00 0.00 33.46 3.86
668 1236 4.214758 CGACTACGTATGTGTGGATATGGA 59.785 45.833 0.00 0.00 34.56 3.41
669 1237 4.473199 CGACTACGTATGTGTGGATATGG 58.527 47.826 0.00 0.00 34.56 2.74
720 1288 2.737932 CTTTTGCAGCACAGGGTCGC 62.738 60.000 0.00 0.00 0.00 5.19
732 1300 1.948611 GCATCCGGTACTCCTTTTGCA 60.949 52.381 0.00 0.00 33.01 4.08
733 1301 0.733150 GCATCCGGTACTCCTTTTGC 59.267 55.000 0.00 0.00 0.00 3.68
734 1302 1.339631 TGGCATCCGGTACTCCTTTTG 60.340 52.381 0.00 0.00 0.00 2.44
743 1311 1.228215 CATGGCATGGCATCCGGTA 60.228 57.895 30.20 3.50 0.00 4.02
776 1344 0.251341 CAAAGGTAGGGCTGTGGCTT 60.251 55.000 0.00 0.00 38.73 4.35
923 1501 1.259316 GAACTTATTTTGCGCTGCCG 58.741 50.000 9.73 0.00 37.57 5.69
991 1574 2.664081 GCAGGGAGTGAGTGAGGGG 61.664 68.421 0.00 0.00 0.00 4.79
1111 1700 3.814268 CTGCAAATCCACCGCGGG 61.814 66.667 31.76 18.27 34.36 6.13
1270 1863 1.731613 GGGCGCGTTTAAAACTGCC 60.732 57.895 8.43 14.37 44.80 4.85
1289 1882 4.814294 CGTCCCCCGCTTTCTCCG 62.814 72.222 0.00 0.00 0.00 4.63
1290 1883 3.372554 CTCGTCCCCCGCTTTCTCC 62.373 68.421 0.00 0.00 36.19 3.71
1291 1884 2.184579 CTCGTCCCCCGCTTTCTC 59.815 66.667 0.00 0.00 36.19 2.87
1326 1927 4.243008 TCGCCACCGAAAGCCACA 62.243 61.111 0.00 0.00 41.17 4.17
1389 2003 2.174319 GCAGATTCTCGCCGAACCC 61.174 63.158 0.00 0.00 33.72 4.11
1413 2027 3.447025 GAAGGGAGGATGCGTCGGG 62.447 68.421 0.00 0.00 0.00 5.14
1418 2032 0.543749 AGAAAGGAAGGGAGGATGCG 59.456 55.000 0.00 0.00 0.00 4.73
1560 2180 6.074516 CCGATGAGCGATTTTATTCTCGTTTA 60.075 38.462 0.00 0.00 44.57 2.01
1621 2244 4.656112 TCTTTCTAGCCTGGGAGATAAAGG 59.344 45.833 0.00 0.00 0.00 3.11
1740 2371 4.530875 GTCCATGGACAAATCAATCCTCT 58.469 43.478 35.21 0.00 44.02 3.69
1930 2574 0.037303 CCTGGATGACAGTGCCAACT 59.963 55.000 0.00 0.00 46.06 3.16
1932 2576 1.379916 CCCTGGATGACAGTGCCAA 59.620 57.895 0.00 0.00 46.06 4.52
1934 2578 2.142292 AACCCCTGGATGACAGTGCC 62.142 60.000 0.00 0.00 46.06 5.01
1936 2580 0.035056 GGAACCCCTGGATGACAGTG 60.035 60.000 0.00 0.00 46.06 3.66
2141 2803 2.124278 GGCAAAGACGGGGATCCC 60.124 66.667 23.95 23.95 41.09 3.85
2225 2887 7.991084 AATCACATACATGGAGGTGATATTG 57.009 36.000 32.39 4.04 46.95 1.90
2235 2897 4.129380 GCAGCACTAATCACATACATGGA 58.871 43.478 0.00 0.00 0.00 3.41
2254 2916 2.787601 ATCAAGCAACAACACAGCAG 57.212 45.000 0.00 0.00 0.00 4.24
2283 2945 5.525378 AGATAACCAAATAAAGAGCTCAGCG 59.475 40.000 17.77 0.00 0.00 5.18
2322 2984 8.687242 AGAGTTCTACCCAAGAAAAAGAAAAAG 58.313 33.333 0.00 0.00 45.78 2.27
2323 2985 8.589701 AGAGTTCTACCCAAGAAAAAGAAAAA 57.410 30.769 0.00 0.00 45.78 1.94
2324 2986 7.832187 TGAGAGTTCTACCCAAGAAAAAGAAAA 59.168 33.333 0.00 0.00 45.78 2.29
2325 2987 7.343357 TGAGAGTTCTACCCAAGAAAAAGAAA 58.657 34.615 0.00 0.00 45.78 2.52
2326 2988 6.895782 TGAGAGTTCTACCCAAGAAAAAGAA 58.104 36.000 0.00 0.00 45.78 2.52
2360 3023 1.077265 CCCAGCTGTCCACCCAAAT 59.923 57.895 13.81 0.00 0.00 2.32
2382 3045 0.586319 ACGTGAAATTCGCCAGTGTG 59.414 50.000 0.51 0.00 0.00 3.82
2442 3105 5.010213 AGTTTAGGACCAAATAAAGCGCAAA 59.990 36.000 11.47 0.00 0.00 3.68
2468 3131 2.853731 ACGACTCAGTAGCATAGTGC 57.146 50.000 0.00 0.00 41.77 4.40
2503 3166 5.762711 TGTTGCTAAGTTCTCTGCATAAACA 59.237 36.000 8.23 0.00 35.27 2.83
2606 3269 1.134551 GCTAGGCAAGTGGAGAGAAGG 60.135 57.143 0.00 0.00 0.00 3.46
2863 3527 6.989169 GTGCTGAAAATACATCTGGTATCTCT 59.011 38.462 0.00 0.00 41.87 3.10
2866 3530 6.763135 TGAGTGCTGAAAATACATCTGGTATC 59.237 38.462 0.00 0.00 41.87 2.24
2893 3557 6.127403 GCGCTCTTACAAATTTATAAGTCCG 58.873 40.000 14.31 16.57 31.53 4.79
2933 3597 7.447374 AACAACTAATGCTAGCATGTAAACA 57.553 32.000 30.19 10.76 36.68 2.83
2958 3622 5.125356 TGTCATTGTTATGGAGCATCGAAT 58.875 37.500 0.00 0.00 34.37 3.34
3096 3760 6.259167 ACACTAGCACACTTTATCAACGAAAA 59.741 34.615 0.00 0.00 0.00 2.29
3097 3761 5.756347 ACACTAGCACACTTTATCAACGAAA 59.244 36.000 0.00 0.00 0.00 3.46
3101 3765 6.539649 TTGACACTAGCACACTTTATCAAC 57.460 37.500 0.00 0.00 0.00 3.18
3147 3811 0.107263 TCTTGAATATGCCTGCGCCA 60.107 50.000 4.18 0.00 0.00 5.69
3189 3853 3.966665 AGAGGGAGATCTTGAAGGACATC 59.033 47.826 0.00 0.00 0.00 3.06
3197 3861 6.013032 ACAAATCTTTCAGAGGGAGATCTTGA 60.013 38.462 0.00 0.00 30.89 3.02
3277 3946 7.559897 AGAGAGAGGGAGTAATCTACAAAAGAG 59.440 40.741 0.00 0.00 37.74 2.85
3311 3980 9.554395 TCTGTATATTCCTATCGAATGCAAAAA 57.446 29.630 0.00 0.00 41.47 1.94
3419 4091 8.863049 GGCATACAAACACAAATAATCAAGAAG 58.137 33.333 0.00 0.00 0.00 2.85
3466 4139 6.959639 AGAAAGGCTTGTCTTTAAACATGA 57.040 33.333 0.00 0.00 37.13 3.07
3553 4226 7.228507 TGTCAGCATAAACACAAGTTACTCATT 59.771 33.333 0.00 0.00 36.84 2.57
3596 4269 2.616458 GGGTTGCCATCCCTCCTGT 61.616 63.158 3.42 0.00 41.58 4.00
3742 4415 2.205022 TGTTTTCCTGATGCTGGAGG 57.795 50.000 0.00 0.00 33.24 4.30
3786 4459 3.494398 CCACCCCTACAAGAATGTATCCG 60.494 52.174 0.00 0.00 41.09 4.18
3801 4474 1.274703 CCACTGCTGATACCACCCCT 61.275 60.000 0.00 0.00 0.00 4.79
3881 4554 9.793259 ACACATCTTTCTTTGACTTCCTAAATA 57.207 29.630 0.00 0.00 0.00 1.40
3883 4556 9.793259 ATACACATCTTTCTTTGACTTCCTAAA 57.207 29.630 0.00 0.00 0.00 1.85
4213 4886 3.652057 AATTCACATGTCAGTAGGGGG 57.348 47.619 0.00 0.00 0.00 5.40
4214 4887 5.476599 TCAAAAATTCACATGTCAGTAGGGG 59.523 40.000 0.00 0.00 0.00 4.79
4215 4888 6.016360 TGTCAAAAATTCACATGTCAGTAGGG 60.016 38.462 0.00 0.00 0.00 3.53
4216 4889 6.969366 TGTCAAAAATTCACATGTCAGTAGG 58.031 36.000 0.00 0.00 0.00 3.18
4217 4890 6.580041 GCTGTCAAAAATTCACATGTCAGTAG 59.420 38.462 0.00 0.00 33.45 2.57
4218 4891 6.039159 TGCTGTCAAAAATTCACATGTCAGTA 59.961 34.615 0.00 0.00 33.45 2.74
4237 5079 1.610522 ACCACATTTGAAGCTGCTGTC 59.389 47.619 1.35 3.94 0.00 3.51
4238 5080 1.696063 ACCACATTTGAAGCTGCTGT 58.304 45.000 1.35 0.00 0.00 4.40
4417 5274 5.774498 ATGTCAGAGTCAATATAGACGCA 57.226 39.130 0.00 0.00 43.24 5.24
4425 5282 6.998074 ACAACCTTCAAATGTCAGAGTCAATA 59.002 34.615 0.00 0.00 0.00 1.90
4480 5337 2.062636 TGTAGCCTCCCTTTCCTTTGT 58.937 47.619 0.00 0.00 0.00 2.83
4509 5366 4.773149 AGTTCTCTTTTACCTCTCATCGGT 59.227 41.667 0.00 0.00 38.55 4.69
4558 5415 9.581099 CATTTTGGTTAACCTTCATATACCAAC 57.419 33.333 24.78 0.00 43.22 3.77
4589 5446 2.906389 CACCCCAGGAATAGCTGCTATA 59.094 50.000 21.56 0.00 0.00 1.31
4702 5559 1.601903 CAGTGCCTTTTTCAGTACGCA 59.398 47.619 0.00 0.00 0.00 5.24
4766 5623 8.282982 ACAGTAGTTCTAAGATCTATCTTCCCA 58.717 37.037 8.45 0.00 43.27 4.37
4889 5746 3.197927 ACCTCTCCATCAGGAAGTTCT 57.802 47.619 2.25 0.00 45.19 3.01
5146 6005 1.541379 TGCTCGTAGACAAGTAGCCA 58.459 50.000 0.00 0.00 32.14 4.75
5312 6171 8.506437 TCAGAGTCATATTTAAAAACTGCACAG 58.494 33.333 0.00 0.00 0.00 3.66
5478 6337 7.815840 TTTCATCATTGTTTACCTGAGACAA 57.184 32.000 0.00 0.00 37.64 3.18
5531 6390 0.179067 AGTTCCGCGACAACCTCAAA 60.179 50.000 8.23 0.00 0.00 2.69
5551 6410 7.174426 CACATAATGGTGATTCATAGCATCTGT 59.826 37.037 0.00 0.00 41.32 3.41
5752 6612 4.275936 GTGCATTTAGGTTTCACAGACAGT 59.724 41.667 0.00 0.00 0.00 3.55
5757 6617 5.940192 TGTAGTGCATTTAGGTTTCACAG 57.060 39.130 0.00 0.00 0.00 3.66
5789 6649 4.073293 TGCCTAGACAGCCTAAATTAGC 57.927 45.455 0.00 0.00 0.00 3.09
5884 6829 4.782019 AGACTAGACAGAAGAACAGCAG 57.218 45.455 0.00 0.00 0.00 4.24
5942 6887 6.078202 TGACGAGAATGTTTGCCAATTAAA 57.922 33.333 0.00 0.00 0.00 1.52
6051 6996 4.154918 CAGATAACTGACACCCAAAAGAGC 59.845 45.833 0.00 0.00 46.03 4.09
6091 7036 4.078980 ACTTCTGGGGCTTCATAATGGAAT 60.079 41.667 0.00 0.00 0.00 3.01
6163 7108 6.282167 TGTTAGAAGTTCCAACATAACGACA 58.718 36.000 12.11 0.00 32.23 4.35
6196 7141 3.565902 GGATTGCTTACCTGTCATAAGGC 59.434 47.826 0.00 0.00 41.46 4.35
6228 7173 6.558009 CATGATTGATGGGTGTGAAAAGTAG 58.442 40.000 0.00 0.00 0.00 2.57
6241 7186 4.250464 AGCAAAACAAGCATGATTGATGG 58.750 39.130 29.17 15.68 34.20 3.51
6396 7341 8.772250 TCTAATCAAAGGATCTACCATCTTTGT 58.228 33.333 15.19 4.87 43.61 2.83
6510 7456 7.378995 GCTCGTCTTAGTGTAAACGATGATATT 59.621 37.037 0.00 0.00 42.55 1.28
6596 7542 2.441750 AGTTAGGGCTTGGACAACTTCA 59.558 45.455 0.00 0.00 0.00 3.02
6638 7584 4.143986 AGCCACTTACATAGAAGCCTTC 57.856 45.455 0.00 0.00 0.00 3.46
6647 7593 3.130516 CGTCTCAGGAAGCCACTTACATA 59.869 47.826 0.00 0.00 0.00 2.29
6680 7626 1.593196 TTTTCTGTGACAGGCTTCGG 58.407 50.000 13.33 0.00 31.51 4.30
6703 7649 2.496817 CTCACCAGGCGCCTACTC 59.503 66.667 32.30 0.00 0.00 2.59
6713 7659 2.693864 ATCAGGGGCCCTCACCAG 60.694 66.667 26.02 11.91 0.00 4.00
6714 7660 3.016971 CATCAGGGGCCCTCACCA 61.017 66.667 26.02 7.38 0.00 4.17
6715 7661 2.692368 TCATCAGGGGCCCTCACC 60.692 66.667 26.02 4.31 0.00 4.02
6716 7662 2.914289 CTCATCAGGGGCCCTCAC 59.086 66.667 26.02 4.76 0.00 3.51
6717 7663 3.092511 GCTCATCAGGGGCCCTCA 61.093 66.667 26.02 12.06 0.00 3.86
6718 7664 4.247380 CGCTCATCAGGGGCCCTC 62.247 72.222 26.02 9.70 0.00 4.30
6720 7666 4.864334 CACGCTCATCAGGGGCCC 62.864 72.222 17.12 17.12 36.88 5.80
6785 7731 6.088085 CCGATCAAAGACATTTTTGCAAGTAC 59.912 38.462 0.00 0.00 37.83 2.73
6796 7742 2.905075 TCATCGCCGATCAAAGACATT 58.095 42.857 0.00 0.00 0.00 2.71
6846 7792 3.879295 ACATCACCAGCCGATAAATTCAG 59.121 43.478 0.00 0.00 0.00 3.02
6919 7865 4.041691 ACACATTGTTGGCTAGTCTTAGGT 59.958 41.667 0.00 0.00 0.00 3.08
6923 7869 4.040952 AGAGACACATTGTTGGCTAGTCTT 59.959 41.667 0.00 0.00 33.74 3.01
7079 10333 4.358851 TGTGTTTTCAAAATCCTGCGAAG 58.641 39.130 0.00 0.00 0.00 3.79
7114 10369 9.910511 CTTTCTTGTTCATGTTTTCAAAATCAG 57.089 29.630 0.00 0.00 0.00 2.90
7125 10382 4.463891 CCCTATGCCTTTCTTGTTCATGTT 59.536 41.667 0.00 0.00 0.00 2.71
7129 10386 3.806949 ACCCTATGCCTTTCTTGTTCA 57.193 42.857 0.00 0.00 0.00 3.18
7133 10390 3.019564 CTCCAACCCTATGCCTTTCTTG 58.980 50.000 0.00 0.00 0.00 3.02
7135 10392 1.064389 GCTCCAACCCTATGCCTTTCT 60.064 52.381 0.00 0.00 0.00 2.52
7140 10397 1.523938 GTCGCTCCAACCCTATGCC 60.524 63.158 0.00 0.00 0.00 4.40
7141 10398 0.392461 TTGTCGCTCCAACCCTATGC 60.392 55.000 0.00 0.00 0.00 3.14
7142 10399 1.656652 CTTGTCGCTCCAACCCTATG 58.343 55.000 0.00 0.00 0.00 2.23
7148 10405 1.244019 AATGGGCTTGTCGCTCCAAC 61.244 55.000 0.00 0.00 40.67 3.77
7155 10412 6.697019 CCTATAAAATTCAAATGGGCTTGTCG 59.303 38.462 0.00 0.00 0.00 4.35
7160 10417 8.551682 TGAATCCTATAAAATTCAAATGGGCT 57.448 30.769 6.87 0.00 38.57 5.19
7184 10447 4.672542 CGGCAACATCAAACACTCCTTATG 60.673 45.833 0.00 0.00 0.00 1.90
7185 10448 3.440173 CGGCAACATCAAACACTCCTTAT 59.560 43.478 0.00 0.00 0.00 1.73
7202 10465 3.577649 TCTTTGTTTTTCACACGGCAA 57.422 38.095 0.00 0.00 33.98 4.52
7231 10494 4.937431 GCCCGCTAGCCATGTCCC 62.937 72.222 9.66 0.00 0.00 4.46
7337 10613 3.271729 TCCCTAAATAAATGCACGCGAA 58.728 40.909 15.93 0.00 0.00 4.70
7597 10881 4.940046 TGCATCATGTTTTGTGTGGTTTTT 59.060 33.333 0.00 0.00 0.00 1.94
7643 10930 5.688807 CCCCATCAATGATGAACTTAGACT 58.311 41.667 23.55 0.00 42.09 3.24
7685 10973 7.172532 TGCATAACGTTCTGAAAGTTATTGTCT 59.827 33.333 27.58 13.29 38.54 3.41
7931 11229 3.665745 ACAATTGTGTGGATTTCTGCC 57.334 42.857 11.07 0.00 36.31 4.85
8066 11370 5.699915 TGCATTGTTGTTTGGTAATCCATTG 59.300 36.000 0.00 0.00 43.91 2.82
8099 11403 5.705905 GGTTTTGTAGGATAGTTGCTCAGTT 59.294 40.000 0.00 0.00 0.00 3.16
8100 11404 5.221843 TGGTTTTGTAGGATAGTTGCTCAGT 60.222 40.000 0.00 0.00 0.00 3.41
8101 11405 5.245531 TGGTTTTGTAGGATAGTTGCTCAG 58.754 41.667 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.