Multiple sequence alignment - TraesCS2D01G212500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G212500 chr2D 100.000 4132 0 0 1 4132 170777863 170781994 0.000000e+00 7631.0
1 TraesCS2D01G212500 chr2B 94.083 3735 126 37 127 3797 225847311 225843608 0.000000e+00 5585.0
2 TraesCS2D01G212500 chr2B 83.193 357 36 8 3797 4132 225842219 225841866 5.190000e-79 305.0
3 TraesCS2D01G212500 chr2A 95.250 3495 109 31 16 3464 178575279 178571796 0.000000e+00 5481.0
4 TraesCS2D01G212500 chr2A 82.709 347 32 13 3637 3959 178571615 178571273 2.430000e-72 283.0
5 TraesCS2D01G212500 chr2A 85.955 178 12 1 3952 4116 1496631 1496454 1.180000e-40 178.0
6 TraesCS2D01G212500 chr2A 97.059 34 1 0 3526 3559 16842751 16842718 1.600000e-04 58.4
7 TraesCS2D01G212500 chr5B 94.286 945 46 2 888 1824 678579935 678578991 0.000000e+00 1439.0
8 TraesCS2D01G212500 chr4B 91.996 937 73 1 888 1824 405288822 405287888 0.000000e+00 1314.0
9 TraesCS2D01G212500 chr7B 95.150 433 7 4 1477 1899 232271979 232272407 0.000000e+00 671.0
10 TraesCS2D01G212500 chr7B 95.000 140 7 0 1124 1263 232271830 232271969 1.930000e-53 220.0
11 TraesCS2D01G212500 chr7B 87.500 120 4 5 1790 1899 232271117 232270999 1.210000e-25 128.0
12 TraesCS2D01G212500 chr3B 85.475 179 13 1 3951 4116 29367058 29367236 1.530000e-39 174.0
13 TraesCS2D01G212500 chr5A 92.683 41 2 1 3520 3560 649711574 649711535 1.600000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G212500 chr2D 170777863 170781994 4131 False 7631.0 7631 100.0000 1 4132 1 chr2D.!!$F1 4131
1 TraesCS2D01G212500 chr2B 225841866 225847311 5445 True 2945.0 5585 88.6380 127 4132 2 chr2B.!!$R1 4005
2 TraesCS2D01G212500 chr2A 178571273 178575279 4006 True 2882.0 5481 88.9795 16 3959 2 chr2A.!!$R3 3943
3 TraesCS2D01G212500 chr5B 678578991 678579935 944 True 1439.0 1439 94.2860 888 1824 1 chr5B.!!$R1 936
4 TraesCS2D01G212500 chr4B 405287888 405288822 934 True 1314.0 1314 91.9960 888 1824 1 chr4B.!!$R1 936
5 TraesCS2D01G212500 chr7B 232271830 232272407 577 False 445.5 671 95.0750 1124 1899 2 chr7B.!!$F1 775

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
725 740 0.032678 ATCATCTAACGAGGCGGCAG 59.967 55.0 13.08 7.4 0.00 4.85 F
1752 1790 0.321653 ACATCAAGGGCGTCCAAGAC 60.322 55.0 9.71 0.0 34.83 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2140 2200 0.798159 TTCGAGATGCATGTGTGTGC 59.202 50.000 2.46 0.0 45.25 4.57 R
3674 3778 1.336440 TCAAATGCACCCTTGTGAACG 59.664 47.619 0.00 0.0 45.76 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.358725 GCAAACCATGAGCTACGCGA 61.359 55.000 15.93 0.00 0.00 5.87
61 62 0.583438 GGTCATGCAACCATCGATCG 59.417 55.000 9.36 9.36 39.27 3.69
118 119 4.388499 CAGGTGGGTTCGGGTCGG 62.388 72.222 0.00 0.00 0.00 4.79
288 293 6.348868 CCGAGGAAGAAAAGGAAAGAAGAATG 60.349 42.308 0.00 0.00 0.00 2.67
324 331 2.489073 GGATCCCCACGGCAGAATTAAT 60.489 50.000 0.00 0.00 0.00 1.40
415 422 6.788456 GGGGGAAGTAAATATACTCTCCTCTT 59.212 42.308 12.57 0.00 41.57 2.85
496 503 3.204382 AGAGAAAACTCCCTTTCCCACAA 59.796 43.478 0.00 0.00 36.18 3.33
593 605 2.543383 CTGCTGATTCGATCGCGC 59.457 61.111 11.09 0.00 37.46 6.86
712 727 1.762460 ACGGGGCTCGGAATCATCT 60.762 57.895 13.20 0.00 44.45 2.90
724 739 0.464036 AATCATCTAACGAGGCGGCA 59.536 50.000 13.08 0.00 0.00 5.69
725 740 0.032678 ATCATCTAACGAGGCGGCAG 59.967 55.000 13.08 7.40 0.00 4.85
726 741 2.107141 ATCTAACGAGGCGGCAGC 59.893 61.111 13.08 0.00 44.18 5.25
785 808 2.099921 ACTCGCCATGTTCTAGTAGCTG 59.900 50.000 0.00 0.00 0.00 4.24
786 809 1.202417 TCGCCATGTTCTAGTAGCTGC 60.202 52.381 0.00 0.00 0.00 5.25
793 816 3.165875 TGTTCTAGTAGCTGCTGGTCTT 58.834 45.455 15.31 0.00 0.00 3.01
795 818 3.876274 TCTAGTAGCTGCTGGTCTTTG 57.124 47.619 15.31 5.39 0.00 2.77
797 820 0.322008 AGTAGCTGCTGGTCTTTGCC 60.322 55.000 13.43 0.00 0.00 4.52
798 821 0.322008 GTAGCTGCTGGTCTTTGCCT 60.322 55.000 13.43 0.00 0.00 4.75
799 822 0.401738 TAGCTGCTGGTCTTTGCCTT 59.598 50.000 13.43 0.00 0.00 4.35
800 823 1.177256 AGCTGCTGGTCTTTGCCTTG 61.177 55.000 0.00 0.00 0.00 3.61
801 824 1.962144 CTGCTGGTCTTTGCCTTGG 59.038 57.895 0.00 0.00 0.00 3.61
802 825 0.825010 CTGCTGGTCTTTGCCTTGGT 60.825 55.000 0.00 0.00 0.00 3.67
804 827 1.662044 CTGGTCTTTGCCTTGGTGC 59.338 57.895 0.00 0.00 0.00 5.01
805 828 1.076412 TGGTCTTTGCCTTGGTGCA 60.076 52.632 0.00 0.00 40.07 4.57
806 829 1.363807 GGTCTTTGCCTTGGTGCAC 59.636 57.895 8.80 8.80 41.88 4.57
813 843 2.743718 CCTTGGTGCACTCCTCGT 59.256 61.111 17.98 0.00 0.00 4.18
851 881 0.657368 CTTGCAGTTTTGTCGTCGGC 60.657 55.000 0.00 0.00 0.00 5.54
852 882 1.369839 TTGCAGTTTTGTCGTCGGCA 61.370 50.000 0.00 0.00 0.00 5.69
958 996 0.441533 GACATCTGCAGCAACTCACG 59.558 55.000 9.47 0.00 0.00 4.35
974 1012 2.655364 CGCGAGATACAGGCGGTG 60.655 66.667 0.00 0.00 45.69 4.94
1683 1721 2.901042 CCCTACCGCTTCAGGGTC 59.099 66.667 5.44 0.00 45.70 4.46
1752 1790 0.321653 ACATCAAGGGCGTCCAAGAC 60.322 55.000 9.71 0.00 34.83 3.01
1847 1885 1.202268 CGAGAACCCAGGTAGCTAACG 60.202 57.143 2.40 0.00 0.00 3.18
1853 1891 2.307768 CCCAGGTAGCTAACGAGATCA 58.692 52.381 2.40 0.00 0.00 2.92
1855 1893 3.132289 CCCAGGTAGCTAACGAGATCAAA 59.868 47.826 2.40 0.00 0.00 2.69
1856 1894 4.202264 CCCAGGTAGCTAACGAGATCAAAT 60.202 45.833 2.40 0.00 0.00 2.32
1857 1895 4.747108 CCAGGTAGCTAACGAGATCAAATG 59.253 45.833 2.40 0.00 0.00 2.32
1858 1896 4.210120 CAGGTAGCTAACGAGATCAAATGC 59.790 45.833 2.40 0.00 0.00 3.56
1910 1968 2.029838 AGTTGGCGATCTTGGTCATC 57.970 50.000 0.00 0.00 0.00 2.92
1911 1969 1.017387 GTTGGCGATCTTGGTCATCC 58.983 55.000 0.00 0.00 0.00 3.51
1913 1971 1.144057 GGCGATCTTGGTCATCCGT 59.856 57.895 0.00 0.00 36.30 4.69
1919 1979 1.452110 TCTTGGTCATCCGTTGCATG 58.548 50.000 0.00 0.00 36.30 4.06
1949 2009 3.483196 CGCTGTTGATTCTTGTTGTGTTG 59.517 43.478 0.00 0.00 0.00 3.33
2137 2197 3.247173 CCTCATCGAGGTACGTACACTAC 59.753 52.174 26.02 9.59 44.25 2.73
2138 2198 4.118410 CTCATCGAGGTACGTACACTACT 58.882 47.826 26.02 14.19 43.13 2.57
2140 2200 4.330894 TCATCGAGGTACGTACACTACTTG 59.669 45.833 26.02 16.80 43.13 3.16
2142 2202 2.160219 CGAGGTACGTACACTACTTGCA 59.840 50.000 26.02 0.00 37.22 4.08
2143 2203 3.496155 GAGGTACGTACACTACTTGCAC 58.504 50.000 26.02 5.70 0.00 4.57
2194 2260 0.848735 AGCATCAGGCCATGGTGTAT 59.151 50.000 14.67 0.00 42.49 2.29
2335 2401 8.157476 AGAAACAGTTCTTGTATACTCAATGGT 58.843 33.333 4.17 0.00 41.55 3.55
2350 2416 4.507710 TCAATGGTATTCTGCTGTCTGTC 58.492 43.478 0.00 0.00 0.00 3.51
2370 2436 3.375299 GTCCTCGTGATTTGATTTGGGAG 59.625 47.826 0.00 0.00 0.00 4.30
2589 2655 4.854924 TCCATGTCCATGCCGCCG 62.855 66.667 1.64 0.00 37.49 6.46
2592 2658 4.856801 ATGTCCATGCCGCCGGTC 62.857 66.667 4.45 0.00 0.00 4.79
2617 2683 6.238648 CCTTAATTTTCTCCACGAAACACAGT 60.239 38.462 0.00 0.00 41.13 3.55
2627 2693 3.785521 CACGAAACACAGTGAAACACATG 59.214 43.478 7.81 0.00 41.43 3.21
2648 2714 3.874392 GCATTGGTGGCAAATCTAACT 57.126 42.857 0.00 0.00 0.00 2.24
2672 2738 1.758280 CATGTGACATGGGAAATGGGG 59.242 52.381 17.51 0.00 0.00 4.96
2702 2768 0.110147 GCATCGACGAGTATCTCCGG 60.110 60.000 3.01 0.00 0.00 5.14
3134 3200 3.055094 ACAATACAAGGATCGGCTGAACT 60.055 43.478 0.00 0.00 0.00 3.01
3138 3204 1.841302 AAGGATCGGCTGAACTGGCA 61.841 55.000 0.00 0.00 0.00 4.92
3307 3380 9.152595 CTTACTCCTAGTACTTTTAAGCCAAAG 57.847 37.037 0.00 0.24 39.35 2.77
3404 3477 4.202514 TGTGTCAACAAATCCCTACATGGA 60.203 41.667 0.00 0.00 34.02 3.41
3425 3498 7.252612 TGGATACATACTTTCTTTCTGGTGA 57.747 36.000 0.00 0.00 46.17 4.02
3481 3554 5.866633 GTCTAGAGTTGGAAGAACATGTCAG 59.133 44.000 0.00 0.00 0.00 3.51
3499 3572 3.823304 GTCAGAAGATCAAAAGCACCCTT 59.177 43.478 0.00 0.00 0.00 3.95
3500 3573 3.822735 TCAGAAGATCAAAAGCACCCTTG 59.177 43.478 0.00 0.00 0.00 3.61
3545 3618 6.048509 TGCTTTGGGAGAAAAAGACAAAATC 58.951 36.000 0.25 0.00 36.88 2.17
3589 3662 5.775686 TGAATTCCTTTTGAAGCACTGATG 58.224 37.500 2.27 0.00 36.14 3.07
3593 3666 6.707440 TTCCTTTTGAAGCACTGATGTTAA 57.293 33.333 0.00 0.00 0.00 2.01
3594 3667 6.072112 TCCTTTTGAAGCACTGATGTTAAC 57.928 37.500 0.00 0.00 0.00 2.01
3701 3805 4.680172 CACAAGGGTGCATTTGAACTCAAA 60.680 41.667 7.31 7.31 42.79 2.69
3717 3826 7.697691 TGAACTCAAAATCAGAAGAACACTTC 58.302 34.615 0.00 0.00 39.94 3.01
3737 3846 4.264460 TCCGCAAAATTAGGTGCAATTT 57.736 36.364 8.79 0.00 40.94 1.82
3738 3847 4.636249 TCCGCAAAATTAGGTGCAATTTT 58.364 34.783 8.79 1.77 44.82 1.82
3769 3878 1.444933 ACCATCACCCCAGAAAGTCA 58.555 50.000 0.00 0.00 0.00 3.41
3845 5343 1.981256 TGTGTCTTTGCTTCTTCCCC 58.019 50.000 0.00 0.00 0.00 4.81
3846 5344 0.875059 GTGTCTTTGCTTCTTCCCCG 59.125 55.000 0.00 0.00 0.00 5.73
3847 5345 0.889186 TGTCTTTGCTTCTTCCCCGC 60.889 55.000 0.00 0.00 0.00 6.13
3848 5346 1.671054 TCTTTGCTTCTTCCCCGCG 60.671 57.895 0.00 0.00 0.00 6.46
3849 5347 2.671619 TTTGCTTCTTCCCCGCGG 60.672 61.111 21.04 21.04 0.00 6.46
3850 5348 3.485346 TTTGCTTCTTCCCCGCGGT 62.485 57.895 26.12 0.00 0.00 5.68
3851 5349 4.697756 TGCTTCTTCCCCGCGGTG 62.698 66.667 26.12 14.27 0.00 4.94
3853 5351 4.394712 CTTCTTCCCCGCGGTGCT 62.395 66.667 26.12 0.00 0.00 4.40
3854 5352 4.388499 TTCTTCCCCGCGGTGCTC 62.388 66.667 26.12 0.00 0.00 4.26
3913 5434 2.603776 GTCTCTCGGGGTGGTGGT 60.604 66.667 0.00 0.00 0.00 4.16
3915 5436 4.394712 CTCTCGGGGTGGTGGTGC 62.395 72.222 0.00 0.00 0.00 5.01
3975 5498 2.044946 GGAGCCAGCCCGTGAATT 60.045 61.111 0.00 0.00 0.00 2.17
3997 5520 0.251073 GCCCGGGCAAGACTTAACTA 59.749 55.000 40.73 0.00 41.49 2.24
4017 5540 1.963338 GACAGTGTGAGCTGCCACC 60.963 63.158 0.00 9.05 39.96 4.61
4020 5543 0.671781 CAGTGTGAGCTGCCACCTAC 60.672 60.000 15.42 9.79 36.26 3.18
4023 5546 2.203922 TGAGCTGCCACCTACCCA 60.204 61.111 0.00 0.00 0.00 4.51
4073 5610 4.518249 AGCACTAATTTTCTAGACTGGCC 58.482 43.478 0.00 0.00 0.00 5.36
4108 5645 2.505364 AATTGCTGGGAGGTGGCTCC 62.505 60.000 0.00 0.00 42.62 4.70
4109 5646 4.980592 TGCTGGGAGGTGGCTCCA 62.981 66.667 8.51 0.00 45.06 3.86
4122 5659 2.986306 GCTCCACCACTGTGCATGC 61.986 63.158 11.82 11.82 41.35 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.280710 TGCATGACCGTAAACCCATCT 59.719 47.619 0.00 0.00 0.00 2.90
61 62 0.034477 AATGGGACGGAACCACCATC 60.034 55.000 10.55 0.00 42.60 3.51
64 65 0.885879 GAAAATGGGACGGAACCACC 59.114 55.000 0.00 0.00 41.58 4.61
67 68 3.062122 TGTAGAAAATGGGACGGAACC 57.938 47.619 0.00 0.00 0.00 3.62
194 195 4.367023 GCTGTCACGTACCGGCCA 62.367 66.667 0.00 0.00 0.00 5.36
288 293 1.776034 GATCCGCGGTTGAGCAATCC 61.776 60.000 27.15 0.00 36.85 3.01
415 422 2.402282 AAGAGTCGCGCGTGTCTTGA 62.402 55.000 33.05 13.67 0.00 3.02
593 605 2.960129 GATTACCGGGCGAGCGTG 60.960 66.667 6.32 0.00 0.00 5.34
701 716 1.001706 CGCCTCGTTAGATGATTCCGA 60.002 52.381 0.00 0.00 0.00 4.55
724 739 4.295119 AACCGACTTGCGTCCGCT 62.295 61.111 13.31 0.00 42.51 5.52
725 740 3.774702 GAACCGACTTGCGTCCGC 61.775 66.667 4.42 4.42 36.82 5.54
726 741 3.110178 GGAACCGACTTGCGTCCG 61.110 66.667 0.00 0.00 36.82 4.79
771 790 3.370104 AGACCAGCAGCTACTAGAACAT 58.630 45.455 0.00 0.00 0.00 2.71
785 808 1.662044 CACCAAGGCAAAGACCAGC 59.338 57.895 0.00 0.00 0.00 4.85
786 809 1.108727 TGCACCAAGGCAAAGACCAG 61.109 55.000 0.00 0.00 41.65 4.00
793 816 1.228245 GAGGAGTGCACCAAGGCAA 60.228 57.895 14.63 0.00 46.93 4.52
795 818 2.743928 CGAGGAGTGCACCAAGGC 60.744 66.667 14.63 0.00 0.00 4.35
797 820 1.734477 CGACGAGGAGTGCACCAAG 60.734 63.158 14.63 3.51 0.00 3.61
798 821 2.338620 CGACGAGGAGTGCACCAA 59.661 61.111 14.63 0.00 0.00 3.67
799 822 2.910479 ACGACGAGGAGTGCACCA 60.910 61.111 14.63 0.00 0.00 4.17
800 823 2.126424 GACGACGAGGAGTGCACC 60.126 66.667 14.63 4.90 0.00 5.01
801 824 2.502080 CGACGACGAGGAGTGCAC 60.502 66.667 9.40 9.40 42.66 4.57
802 825 2.667199 TCGACGACGAGGAGTGCA 60.667 61.111 5.75 0.00 43.81 4.57
813 843 7.334671 ACTGCAAGAGAATATATAGATCGACGA 59.665 37.037 0.00 0.00 37.43 4.20
958 996 2.279517 CCACCGCCTGTATCTCGC 60.280 66.667 0.00 0.00 0.00 5.03
1044 1082 2.051703 GACGCGATCCTCGAGAGC 60.052 66.667 15.93 12.49 43.74 4.09
1683 1721 2.203800 TCACAAGCTTATCGTAGGCG 57.796 50.000 0.00 0.00 35.71 5.52
1692 1730 1.083806 CGCTGGCGATCACAAGCTTA 61.084 55.000 9.51 0.00 42.83 3.09
1752 1790 1.425428 GCGGAGGAAGATTGCGTTG 59.575 57.895 0.00 0.00 0.00 4.10
1871 1919 6.461092 CCAACTACACTCTACTCAACAACAGA 60.461 42.308 0.00 0.00 0.00 3.41
1910 1968 1.495509 CGTGTACCACATGCAACGG 59.504 57.895 0.00 0.00 33.40 4.44
1919 1979 2.413837 AGAATCAACAGCGTGTACCAC 58.586 47.619 0.00 0.00 0.00 4.16
1949 2009 2.941720 GACAGGCCTGTTGATTCAGATC 59.058 50.000 37.98 18.08 45.05 2.75
2140 2200 0.798159 TTCGAGATGCATGTGTGTGC 59.202 50.000 2.46 0.00 45.25 4.57
2142 2202 3.603532 AGAATTCGAGATGCATGTGTGT 58.396 40.909 2.46 0.00 0.00 3.72
2143 2203 4.193021 GAGAATTCGAGATGCATGTGTG 57.807 45.455 2.46 0.00 0.00 3.82
2194 2260 4.385199 GGGATGATCAATTCAGGTACACCA 60.385 45.833 0.00 0.00 37.89 4.17
2335 2401 2.164422 CACGAGGACAGACAGCAGAATA 59.836 50.000 0.00 0.00 0.00 1.75
2350 2416 3.347216 ACTCCCAAATCAAATCACGAGG 58.653 45.455 0.00 0.00 0.00 4.63
2370 2436 2.359478 CCACCGGCCACCAGTAAC 60.359 66.667 0.00 0.00 0.00 2.50
2516 2582 1.168407 ACTTGACGAACTCCGACGGA 61.168 55.000 17.28 17.28 41.76 4.69
2589 2655 5.952526 TTTCGTGGAGAAAATTAAGGACC 57.047 39.130 0.00 0.00 45.05 4.46
2617 2683 1.343789 CCACCAATGCCATGTGTTTCA 59.656 47.619 0.00 0.00 0.00 2.69
2627 2693 2.497273 AGTTAGATTTGCCACCAATGCC 59.503 45.455 0.00 0.00 0.00 4.40
2639 2705 6.151648 CCCATGTCACATGTTCAGTTAGATTT 59.848 38.462 16.74 0.00 0.00 2.17
2640 2706 5.649395 CCCATGTCACATGTTCAGTTAGATT 59.351 40.000 16.74 0.00 0.00 2.40
2648 2714 3.510753 CCATTTCCCATGTCACATGTTCA 59.489 43.478 16.74 0.00 0.00 3.18
2672 2738 4.950062 TCGATGCCGATCCTGCGC 62.950 66.667 0.00 0.00 40.30 6.09
3343 3416 4.164030 TCAGGATGCAAAATAGCCTAGACA 59.836 41.667 0.00 0.00 30.89 3.41
3435 3508 5.200483 ACAGATCCACCAGAAAAAGTTCAA 58.800 37.500 0.00 0.00 36.09 2.69
3481 3554 3.569701 TCACAAGGGTGCTTTTGATCTTC 59.430 43.478 0.00 0.00 44.87 2.87
3499 3572 5.509501 GCATTGGAAATGTTCTTCCTTCACA 60.510 40.000 4.15 0.00 44.57 3.58
3500 3573 4.925646 GCATTGGAAATGTTCTTCCTTCAC 59.074 41.667 4.15 0.00 44.57 3.18
3573 3646 7.436080 ACATTGTTAACATCAGTGCTTCAAAAG 59.564 33.333 9.56 0.00 0.00 2.27
3593 3666 9.398170 CGAAATTCTATGAAGAACAAACATTGT 57.602 29.630 0.00 0.00 44.40 2.71
3594 3667 8.368126 GCGAAATTCTATGAAGAACAAACATTG 58.632 33.333 0.00 0.00 44.40 2.82
3610 3683 7.461807 CGTGTTCTTTATACGTGCGAAATTCTA 60.462 37.037 0.00 0.00 36.71 2.10
3674 3778 1.336440 TCAAATGCACCCTTGTGAACG 59.664 47.619 0.00 0.00 45.76 3.95
3717 3826 6.091986 ACATAAAATTGCACCTAATTTTGCGG 59.908 34.615 14.31 7.94 45.09 5.69
3754 3863 2.103153 AGTCTGACTTTCTGGGGTGA 57.897 50.000 4.06 0.00 0.00 4.02
3769 3878 3.610114 GCAAATGATTGTCGCACAAGTCT 60.610 43.478 7.58 0.00 41.94 3.24
3823 5321 3.321968 GGGGAAGAAGCAAAGACACATTT 59.678 43.478 0.00 0.00 0.00 2.32
3851 5349 0.536006 AATGGCCTGCTAATCGGAGC 60.536 55.000 3.32 0.00 43.16 4.70
3853 5351 1.347707 CCTAATGGCCTGCTAATCGGA 59.652 52.381 3.32 0.00 0.00 4.55
3854 5352 1.072331 ACCTAATGGCCTGCTAATCGG 59.928 52.381 3.32 0.00 36.63 4.18
3857 5355 3.290710 CACAACCTAATGGCCTGCTAAT 58.709 45.455 3.32 0.00 36.63 1.73
3859 5357 1.633432 ACACAACCTAATGGCCTGCTA 59.367 47.619 3.32 0.00 36.63 3.49
3860 5358 0.405585 ACACAACCTAATGGCCTGCT 59.594 50.000 3.32 0.00 36.63 4.24
3861 5359 1.067635 CAACACAACCTAATGGCCTGC 60.068 52.381 3.32 0.00 36.63 4.85
3862 5360 1.545582 CCAACACAACCTAATGGCCTG 59.454 52.381 3.32 0.00 36.63 4.85
3863 5361 1.146982 ACCAACACAACCTAATGGCCT 59.853 47.619 3.32 0.00 36.63 5.19
3958 5481 2.044946 AATTCACGGGCTGGCTCC 60.045 61.111 0.00 0.00 0.00 4.70
3965 5488 3.508840 CGGGCTGAATTCACGGGC 61.509 66.667 3.38 8.34 40.32 6.13
3968 5491 3.508840 GCCCGGGCTGAATTCACG 61.509 66.667 38.76 7.00 38.26 4.35
3975 5498 1.485294 TTAAGTCTTGCCCGGGCTGA 61.485 55.000 43.34 35.43 42.51 4.26
3997 5520 1.756665 TGGCAGCTCACACTGTCAT 59.243 52.632 0.00 0.00 46.89 3.06
4089 5626 1.000396 GAGCCACCTCCCAGCAATT 60.000 57.895 0.00 0.00 31.68 2.32
4090 5627 2.679716 GAGCCACCTCCCAGCAAT 59.320 61.111 0.00 0.00 31.68 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.