Multiple sequence alignment - TraesCS2D01G211900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G211900 chr2D 100.000 4854 0 0 1 4854 170404189 170409042 0.000000e+00 8964
1 TraesCS2D01G211900 chr2A 96.511 4786 87 23 1 4743 179819161 179814413 0.000000e+00 7840
2 TraesCS2D01G211900 chr2B 97.364 3793 72 14 804 4570 227114735 227110945 0.000000e+00 6425
3 TraesCS2D01G211900 chr2B 92.615 826 25 9 1 803 227115650 227114838 0.000000e+00 1155
4 TraesCS2D01G211900 chr2B 89.177 231 16 5 4540 4767 227110917 227110693 3.700000e-71 279
5 TraesCS2D01G211900 chr5A 85.484 124 12 4 4546 4665 475994601 475994480 1.830000e-24 124
6 TraesCS2D01G211900 chr5D 84.956 113 17 0 4552 4664 450398171 450398059 1.100000e-21 115
7 TraesCS2D01G211900 chr4B 85.714 112 12 4 4553 4662 461624752 461624643 1.100000e-21 115
8 TraesCS2D01G211900 chr4A 85.217 115 14 2 4552 4664 75354989 75354876 1.100000e-21 115
9 TraesCS2D01G211900 chr3D 85.088 114 15 2 4553 4664 8686544 8686431 1.100000e-21 115
10 TraesCS2D01G211900 chr1D 84.956 113 17 0 4543 4655 42271580 42271692 1.100000e-21 115
11 TraesCS2D01G211900 chr6A 84.483 116 16 2 4550 4664 233401565 233401451 3.970000e-21 113
12 TraesCS2D01G211900 chr3B 91.250 80 7 0 4765 4844 673135352 673135431 5.140000e-20 110
13 TraesCS2D01G211900 chr7D 83.065 124 16 5 4542 4661 552968233 552968355 1.850000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G211900 chr2D 170404189 170409042 4853 False 8964.000000 8964 100.000 1 4854 1 chr2D.!!$F1 4853
1 TraesCS2D01G211900 chr2A 179814413 179819161 4748 True 7840.000000 7840 96.511 1 4743 1 chr2A.!!$R1 4742
2 TraesCS2D01G211900 chr2B 227110693 227115650 4957 True 2619.666667 6425 93.052 1 4767 3 chr2B.!!$R1 4766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 512 1.086696 CTTAAGTCATGTGCCCACCG 58.913 55.000 0.00 0.0 0.00 4.94 F
1110 1245 0.835941 CTACTGCTTCAGATGGCCCT 59.164 55.000 0.00 0.0 35.18 5.19 F
2073 2208 0.762418 TCCACAATCACGGTCTTGGT 59.238 50.000 5.31 0.0 0.00 3.67 F
3568 3703 3.889227 TGGAAAGCCAATCGAGCG 58.111 55.556 0.00 0.0 42.49 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 1986 1.202976 ACTGTCATGCTTGCCCTTCTT 60.203 47.619 0.00 0.00 0.0 2.52 R
2441 2576 1.408822 GCCTACCATAGCCTTGCACTT 60.409 52.381 0.00 0.00 0.0 3.16 R
3748 3883 1.909302 TGCAACAAACAAAAAGGGGGA 59.091 42.857 0.00 0.00 0.0 4.81 R
4814 5036 0.181587 CACCCAACCCCGTATGCATA 59.818 55.000 1.16 1.16 0.0 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 159 1.205417 GTCCCATTTGTCATGCTTGGG 59.795 52.381 10.32 10.32 46.99 4.12
250 259 5.622914 GCCATTGTGTTCATAATTGAGCTGT 60.623 40.000 0.00 0.00 34.45 4.40
347 357 4.837860 TGGGTGGTTTGATCTGCTTAAATT 59.162 37.500 0.00 0.00 0.00 1.82
488 512 1.086696 CTTAAGTCATGTGCCCACCG 58.913 55.000 0.00 0.00 0.00 4.94
507 531 1.378911 CTGCCTGGCTGCATGGTAA 60.379 57.895 21.03 0.00 41.16 2.85
685 712 3.315191 CAGTAGGTTATCCAATTTGGCCG 59.685 47.826 10.76 0.00 37.47 6.13
773 800 4.866486 GCTAATTTCTTGGCCAATCAACAG 59.134 41.667 20.85 14.98 33.06 3.16
797 824 8.672815 CAGTTCCTCTTTCATCCTCTTTTTATC 58.327 37.037 0.00 0.00 0.00 1.75
803 830 4.753516 TCATCCTCTTTTTATCGCCTCA 57.246 40.909 0.00 0.00 0.00 3.86
805 832 5.684704 TCATCCTCTTTTTATCGCCTCATT 58.315 37.500 0.00 0.00 0.00 2.57
807 834 5.359194 TCCTCTTTTTATCGCCTCATTCT 57.641 39.130 0.00 0.00 0.00 2.40
808 835 5.745227 TCCTCTTTTTATCGCCTCATTCTT 58.255 37.500 0.00 0.00 0.00 2.52
809 836 6.180472 TCCTCTTTTTATCGCCTCATTCTTT 58.820 36.000 0.00 0.00 0.00 2.52
810 837 6.659242 TCCTCTTTTTATCGCCTCATTCTTTT 59.341 34.615 0.00 0.00 0.00 2.27
885 1017 6.369615 GCTGCTTCATTTATTGACCACATTTT 59.630 34.615 0.00 0.00 32.84 1.82
941 1076 6.154445 AGTGCAATTACAAGAAGCTTCATTG 58.846 36.000 27.57 25.83 0.00 2.82
956 1091 4.095483 GCTTCATTGTGTCTATCAAGTGGG 59.905 45.833 0.00 0.00 0.00 4.61
1014 1149 3.701040 AGAACAAAATGTCCAGCAACAGT 59.299 39.130 0.00 0.00 31.50 3.55
1110 1245 0.835941 CTACTGCTTCAGATGGCCCT 59.164 55.000 0.00 0.00 35.18 5.19
1275 1410 6.002082 GGTCTTAAGGAAGAACAAAGCCTTA 58.998 40.000 1.85 0.00 46.99 2.69
1279 1414 9.449719 TCTTAAGGAAGAACAAAGCCTTATTAG 57.550 33.333 1.85 0.00 41.26 1.73
1572 1707 2.397044 AGGGTGCCAAGGAATCAAAA 57.603 45.000 0.00 0.00 0.00 2.44
1851 1986 5.477291 TGCAGGGAAAATTGGATTTAACGTA 59.523 36.000 0.00 0.00 0.00 3.57
2073 2208 0.762418 TCCACAATCACGGTCTTGGT 59.238 50.000 5.31 0.00 0.00 3.67
2155 2290 8.722480 TTGTGGAGTAGATTTGTATGATGAAG 57.278 34.615 0.00 0.00 0.00 3.02
2196 2331 5.287035 CGGCAAGCAAAATCTTATCAAAGAC 59.713 40.000 0.00 0.00 44.40 3.01
2441 2576 4.660303 AGTATGCCTTGATTCAGGGTATGA 59.340 41.667 22.97 8.90 36.70 2.15
3568 3703 3.889227 TGGAAAGCCAATCGAGCG 58.111 55.556 0.00 0.00 42.49 5.03
3748 3883 8.408043 TGGTACTTGTTCAATCAAGATGATTT 57.592 30.769 12.38 0.00 44.03 2.17
3905 4041 9.548208 GTACGAAACGTAGTAAGAGAACTATTT 57.452 33.333 4.28 0.00 45.00 1.40
4036 4173 7.803189 CAGCAAATATTTAGTTTCGTTCACACT 59.197 33.333 0.00 0.00 0.00 3.55
4120 4266 4.526650 TGCGTAGATGAGCTGGGAATAATA 59.473 41.667 0.00 0.00 0.00 0.98
4136 4282 6.103997 GGAATAATAATGACGGGCTTATCGA 58.896 40.000 0.00 0.00 0.00 3.59
4314 4466 6.352516 ACTTCCCAGTAGATGATGATGAAAC 58.647 40.000 0.00 0.00 0.00 2.78
4415 4576 5.682234 ATGTTCATGTCATCTCTACACCA 57.318 39.130 0.00 0.00 0.00 4.17
4417 4578 5.482006 TGTTCATGTCATCTCTACACCAAG 58.518 41.667 0.00 0.00 0.00 3.61
4439 4600 8.830580 CCAAGGTGATATATTCTGTTTACACTG 58.169 37.037 0.00 0.00 0.00 3.66
4447 4608 7.907214 ATATTCTGTTTACACTGGTCAAGTC 57.093 36.000 0.00 0.00 36.83 3.01
4472 4633 5.360714 CACTGGCTGTCCATATAATTTTGGT 59.639 40.000 0.00 0.00 42.51 3.67
4531 4692 3.490439 AATTTTCAGGCCTTGTTTGGG 57.510 42.857 0.00 0.00 0.00 4.12
4585 4804 7.757624 GCTAAAGCATATCTAGATGTGTCCTAC 59.242 40.741 25.01 11.93 41.59 3.18
4586 4805 7.847711 AAAGCATATCTAGATGTGTCCTACT 57.152 36.000 25.01 13.64 33.21 2.57
4604 4823 7.124298 TGTCCTACTTATTGCACATCTAAGTCT 59.876 37.037 11.38 0.00 37.07 3.24
4614 4833 7.977789 TGCACATCTAAGTCTTGTTTCATTA 57.022 32.000 0.00 0.00 0.00 1.90
4645 4864 3.247648 CGGAGATTCGTGCGGATATTTTT 59.752 43.478 0.00 0.00 0.00 1.94
4689 4910 3.234353 CAGATGTGCCCTAGATAGACCA 58.766 50.000 0.00 0.00 0.00 4.02
4767 4989 0.035739 GTGAGCCCCGTACCAAAAGA 59.964 55.000 0.00 0.00 0.00 2.52
4768 4990 0.323629 TGAGCCCCGTACCAAAAGAG 59.676 55.000 0.00 0.00 0.00 2.85
4769 4991 0.323957 GAGCCCCGTACCAAAAGAGT 59.676 55.000 0.00 0.00 0.00 3.24
4770 4992 0.036306 AGCCCCGTACCAAAAGAGTG 59.964 55.000 0.00 0.00 0.00 3.51
4771 4993 0.958876 GCCCCGTACCAAAAGAGTGG 60.959 60.000 0.00 0.00 44.92 4.00
4772 4994 0.688487 CCCCGTACCAAAAGAGTGGA 59.312 55.000 0.00 0.00 41.65 4.02
4773 4995 1.072648 CCCCGTACCAAAAGAGTGGAA 59.927 52.381 0.00 0.00 41.65 3.53
4774 4996 2.423577 CCCGTACCAAAAGAGTGGAAG 58.576 52.381 0.00 0.00 41.65 3.46
4775 4997 2.423577 CCGTACCAAAAGAGTGGAAGG 58.576 52.381 0.00 0.00 41.65 3.46
4776 4998 2.224450 CCGTACCAAAAGAGTGGAAGGT 60.224 50.000 0.00 0.00 41.65 3.50
4777 4999 3.473625 CGTACCAAAAGAGTGGAAGGTT 58.526 45.455 0.00 0.00 41.65 3.50
4778 5000 3.881089 CGTACCAAAAGAGTGGAAGGTTT 59.119 43.478 0.00 0.00 41.65 3.27
4779 5001 5.058490 CGTACCAAAAGAGTGGAAGGTTTA 58.942 41.667 0.00 0.00 41.65 2.01
4780 5002 5.049886 CGTACCAAAAGAGTGGAAGGTTTAC 60.050 44.000 0.00 0.00 41.65 2.01
4781 5003 5.125367 ACCAAAAGAGTGGAAGGTTTACT 57.875 39.130 0.00 0.00 41.65 2.24
4782 5004 4.887655 ACCAAAAGAGTGGAAGGTTTACTG 59.112 41.667 0.00 0.00 41.65 2.74
4783 5005 4.887655 CCAAAAGAGTGGAAGGTTTACTGT 59.112 41.667 0.00 0.00 41.65 3.55
4784 5006 5.221048 CCAAAAGAGTGGAAGGTTTACTGTG 60.221 44.000 0.00 0.00 41.65 3.66
4785 5007 5.367945 AAAGAGTGGAAGGTTTACTGTGA 57.632 39.130 0.00 0.00 0.00 3.58
4786 5008 5.367945 AAGAGTGGAAGGTTTACTGTGAA 57.632 39.130 0.00 0.00 0.00 3.18
4787 5009 4.962155 AGAGTGGAAGGTTTACTGTGAAG 58.038 43.478 0.00 0.00 0.00 3.02
4788 5010 4.654262 AGAGTGGAAGGTTTACTGTGAAGA 59.346 41.667 0.00 0.00 0.00 2.87
4789 5011 4.962155 AGTGGAAGGTTTACTGTGAAGAG 58.038 43.478 0.00 0.00 0.00 2.85
4790 5012 4.409247 AGTGGAAGGTTTACTGTGAAGAGT 59.591 41.667 0.00 0.00 0.00 3.24
4791 5013 4.511826 GTGGAAGGTTTACTGTGAAGAGTG 59.488 45.833 0.00 0.00 0.00 3.51
4792 5014 3.498777 GGAAGGTTTACTGTGAAGAGTGC 59.501 47.826 0.00 0.00 0.00 4.40
4793 5015 2.755650 AGGTTTACTGTGAAGAGTGCG 58.244 47.619 0.00 0.00 0.00 5.34
4794 5016 2.102588 AGGTTTACTGTGAAGAGTGCGT 59.897 45.455 0.00 0.00 0.00 5.24
4795 5017 3.319972 AGGTTTACTGTGAAGAGTGCGTA 59.680 43.478 0.00 0.00 0.00 4.42
4796 5018 3.427863 GGTTTACTGTGAAGAGTGCGTAC 59.572 47.826 0.00 0.00 0.00 3.67
4797 5019 3.293311 TTACTGTGAAGAGTGCGTACC 57.707 47.619 0.00 0.00 0.00 3.34
4798 5020 0.039437 ACTGTGAAGAGTGCGTACCG 60.039 55.000 0.00 0.00 0.00 4.02
4815 5037 4.932789 GCCTTGCGACTGTCCATA 57.067 55.556 1.55 0.00 0.00 2.74
4816 5038 3.386543 GCCTTGCGACTGTCCATAT 57.613 52.632 1.55 0.00 0.00 1.78
4817 5039 0.940126 GCCTTGCGACTGTCCATATG 59.060 55.000 1.55 0.00 0.00 1.78
4818 5040 0.940126 CCTTGCGACTGTCCATATGC 59.060 55.000 1.55 0.00 0.00 3.14
4819 5041 1.655484 CTTGCGACTGTCCATATGCA 58.345 50.000 1.55 2.75 0.00 3.96
4820 5042 2.216046 CTTGCGACTGTCCATATGCAT 58.784 47.619 3.79 3.79 31.70 3.96
4821 5043 3.392882 CTTGCGACTGTCCATATGCATA 58.607 45.455 9.27 9.27 31.70 3.14
4822 5044 2.754472 TGCGACTGTCCATATGCATAC 58.246 47.619 8.99 0.00 0.00 2.39
4823 5045 1.721389 GCGACTGTCCATATGCATACG 59.279 52.381 8.99 0.00 0.00 3.06
4824 5046 2.328473 CGACTGTCCATATGCATACGG 58.672 52.381 12.71 12.71 0.00 4.02
4825 5047 2.688507 GACTGTCCATATGCATACGGG 58.311 52.381 18.30 17.37 0.00 5.28
4826 5048 1.347707 ACTGTCCATATGCATACGGGG 59.652 52.381 18.30 15.06 0.00 5.73
4827 5049 1.347707 CTGTCCATATGCATACGGGGT 59.652 52.381 18.30 0.00 0.00 4.95
4828 5050 1.771854 TGTCCATATGCATACGGGGTT 59.228 47.619 18.30 0.00 0.00 4.11
4829 5051 2.151202 GTCCATATGCATACGGGGTTG 58.849 52.381 18.30 7.31 0.00 3.77
4830 5052 1.073125 TCCATATGCATACGGGGTTGG 59.927 52.381 18.30 15.62 0.00 3.77
4831 5053 1.533625 CATATGCATACGGGGTTGGG 58.466 55.000 8.99 0.00 0.00 4.12
4832 5054 1.145571 ATATGCATACGGGGTTGGGT 58.854 50.000 8.99 0.00 0.00 4.51
4833 5055 0.181587 TATGCATACGGGGTTGGGTG 59.818 55.000 1.16 0.00 0.00 4.61
4834 5056 3.138128 GCATACGGGGTTGGGTGC 61.138 66.667 0.00 0.00 0.00 5.01
4835 5057 2.353189 CATACGGGGTTGGGTGCA 59.647 61.111 0.00 0.00 0.00 4.57
4836 5058 1.077068 CATACGGGGTTGGGTGCAT 60.077 57.895 0.00 0.00 0.00 3.96
4837 5059 1.101049 CATACGGGGTTGGGTGCATC 61.101 60.000 0.00 0.00 0.00 3.91
4838 5060 1.567208 ATACGGGGTTGGGTGCATCA 61.567 55.000 0.00 0.00 0.00 3.07
4839 5061 1.567208 TACGGGGTTGGGTGCATCAT 61.567 55.000 0.00 0.00 0.00 2.45
4840 5062 2.417257 CGGGGTTGGGTGCATCATG 61.417 63.158 0.00 0.00 0.00 3.07
4841 5063 1.305213 GGGGTTGGGTGCATCATGT 60.305 57.895 0.00 0.00 0.00 3.21
4842 5064 1.606885 GGGGTTGGGTGCATCATGTG 61.607 60.000 0.00 0.00 0.00 3.21
4852 5074 2.109431 CATCATGTGCTTTCCGGGG 58.891 57.895 0.00 0.00 0.00 5.73
4853 5075 1.076777 ATCATGTGCTTTCCGGGGG 60.077 57.895 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 49 6.726490 ATGTACACTATCCATACTTCGGTT 57.274 37.500 0.00 0.00 0.00 4.44
150 159 5.821995 ACCTACTTATACCGACTGAGAACTC 59.178 44.000 0.00 0.00 0.00 3.01
217 226 2.224992 TGAACACAATGGCCACCACTAT 60.225 45.455 8.16 0.00 35.80 2.12
250 259 3.369892 CCAAAACATTCAAACCCACCACA 60.370 43.478 0.00 0.00 0.00 4.17
347 357 6.322456 TGTGACATAAACTGTGAAAAATCCCA 59.678 34.615 0.00 0.00 38.54 4.37
545 572 0.114560 AGGACGGAAGGACTGAGGAA 59.885 55.000 0.00 0.00 0.00 3.36
773 800 7.677511 GCGATAAAAAGAGGATGAAAGAGGAAC 60.678 40.741 0.00 0.00 0.00 3.62
797 824 4.635765 TCCTGAATACAAAAGAATGAGGCG 59.364 41.667 0.00 0.00 0.00 5.52
941 1076 5.049405 CACTCAAAACCCACTTGATAGACAC 60.049 44.000 0.00 0.00 32.53 3.67
956 1091 1.261619 CCAGTCACGAGCACTCAAAAC 59.738 52.381 0.00 0.00 0.00 2.43
1110 1245 4.956075 TGTGCTAATCTCAGATCAGTGGTA 59.044 41.667 0.00 0.00 0.00 3.25
1275 1410 3.152341 GGCAGCACCATGATAAGCTAAT 58.848 45.455 0.00 0.00 38.86 1.73
1279 1414 2.797837 TGGCAGCACCATGATAAGC 58.202 52.632 0.00 0.00 46.36 3.09
1851 1986 1.202976 ACTGTCATGCTTGCCCTTCTT 60.203 47.619 0.00 0.00 0.00 2.52
1995 2130 4.492494 TGCAAGTCTGATGACCATACAT 57.508 40.909 0.00 0.00 43.91 2.29
2110 2245 3.914426 ATCTTGATAACTTCCAGCCGT 57.086 42.857 0.00 0.00 0.00 5.68
2155 2290 1.587034 GCCGTAACAATCGTCTAGTGC 59.413 52.381 0.00 0.00 0.00 4.40
2196 2331 2.146342 AGACAGTTTGAAGTGGCATCG 58.854 47.619 7.14 0.00 39.93 3.84
2441 2576 1.408822 GCCTACCATAGCCTTGCACTT 60.409 52.381 0.00 0.00 0.00 3.16
3568 3703 4.901868 TGTTCCACTTGACCCATAAGTAC 58.098 43.478 0.00 0.00 36.29 2.73
3748 3883 1.909302 TGCAACAAACAAAAAGGGGGA 59.091 42.857 0.00 0.00 0.00 4.81
3905 4041 9.337396 CATAAAGACCTTGGCATAGTATAACAA 57.663 33.333 0.00 0.47 0.00 2.83
3972 4108 4.798882 ACATTTTCCCAAACAGGTCACTA 58.201 39.130 0.00 0.00 34.66 2.74
4047 4184 2.308570 ACCATCATCCAGCACCTGTTTA 59.691 45.455 0.00 0.00 0.00 2.01
4120 4266 1.480954 ACAGTCGATAAGCCCGTCATT 59.519 47.619 0.00 0.00 0.00 2.57
4244 4396 3.120304 GGCGACCTTGATATTTAATCGGC 60.120 47.826 1.55 1.55 44.49 5.54
4314 4466 0.660005 CACACAAAACGCATCACCCG 60.660 55.000 0.00 0.00 0.00 5.28
4415 4576 8.548877 ACCAGTGTAAACAGAATATATCACCTT 58.451 33.333 0.00 0.00 0.00 3.50
4417 4578 7.985184 TGACCAGTGTAAACAGAATATATCACC 59.015 37.037 0.00 0.00 0.00 4.02
4439 4600 0.603975 GACAGCCAGTGGACTTGACC 60.604 60.000 15.20 0.00 0.00 4.02
4498 4659 4.559153 CCTGAAAATTTGCGATCACCTTT 58.441 39.130 0.00 0.00 0.00 3.11
4503 4664 2.170166 AGGCCTGAAAATTTGCGATCA 58.830 42.857 3.11 0.00 0.00 2.92
4580 4799 7.661536 AGACTTAGATGTGCAATAAGTAGGA 57.338 36.000 12.31 0.00 39.28 2.94
4585 4804 8.506437 TGAAACAAGACTTAGATGTGCAATAAG 58.494 33.333 0.00 0.00 33.63 1.73
4586 4805 8.389779 TGAAACAAGACTTAGATGTGCAATAA 57.610 30.769 0.00 0.00 0.00 1.40
4604 4823 7.762588 TCTCCGGGTAAAATTAATGAAACAA 57.237 32.000 0.00 0.00 0.00 2.83
4614 4833 2.681344 GCACGAATCTCCGGGTAAAATT 59.319 45.455 0.00 0.00 35.00 1.82
4621 4840 1.802337 TATCCGCACGAATCTCCGGG 61.802 60.000 0.00 0.00 41.02 5.73
4767 4989 4.409247 ACTCTTCACAGTAAACCTTCCACT 59.591 41.667 0.00 0.00 0.00 4.00
4768 4990 4.511826 CACTCTTCACAGTAAACCTTCCAC 59.488 45.833 0.00 0.00 0.00 4.02
4769 4991 4.703897 CACTCTTCACAGTAAACCTTCCA 58.296 43.478 0.00 0.00 0.00 3.53
4770 4992 3.498777 GCACTCTTCACAGTAAACCTTCC 59.501 47.826 0.00 0.00 0.00 3.46
4771 4993 3.184581 CGCACTCTTCACAGTAAACCTTC 59.815 47.826 0.00 0.00 0.00 3.46
4772 4994 3.131396 CGCACTCTTCACAGTAAACCTT 58.869 45.455 0.00 0.00 0.00 3.50
4773 4995 2.102588 ACGCACTCTTCACAGTAAACCT 59.897 45.455 0.00 0.00 0.00 3.50
4774 4996 2.480845 ACGCACTCTTCACAGTAAACC 58.519 47.619 0.00 0.00 0.00 3.27
4775 4997 3.427863 GGTACGCACTCTTCACAGTAAAC 59.572 47.826 0.00 0.00 0.00 2.01
4776 4998 3.645884 GGTACGCACTCTTCACAGTAAA 58.354 45.455 0.00 0.00 0.00 2.01
4777 4999 3.293311 GGTACGCACTCTTCACAGTAA 57.707 47.619 0.00 0.00 0.00 2.24
4779 5001 3.888093 GGTACGCACTCTTCACAGT 57.112 52.632 0.00 0.00 0.00 3.55
4799 5021 0.940126 GCATATGGACAGTCGCAAGG 59.060 55.000 4.56 0.00 38.47 3.61
4800 5022 1.655484 TGCATATGGACAGTCGCAAG 58.345 50.000 4.56 0.00 0.00 4.01
4801 5023 2.330440 ATGCATATGGACAGTCGCAA 57.670 45.000 0.00 0.00 32.38 4.85
4802 5024 2.754472 GTATGCATATGGACAGTCGCA 58.246 47.619 10.16 2.96 0.00 5.10
4803 5025 1.721389 CGTATGCATATGGACAGTCGC 59.279 52.381 16.84 0.00 0.00 5.19
4804 5026 2.328473 CCGTATGCATATGGACAGTCG 58.672 52.381 33.07 17.95 41.06 4.18
4805 5027 2.612972 CCCCGTATGCATATGGACAGTC 60.613 54.545 36.51 10.87 41.06 3.51
4806 5028 1.347707 CCCCGTATGCATATGGACAGT 59.652 52.381 36.51 1.02 41.06 3.55
4807 5029 1.347707 ACCCCGTATGCATATGGACAG 59.652 52.381 36.51 27.32 41.06 3.51
4808 5030 1.429930 ACCCCGTATGCATATGGACA 58.570 50.000 36.51 3.39 41.06 4.02
4809 5031 2.151202 CAACCCCGTATGCATATGGAC 58.849 52.381 36.51 15.68 41.06 4.02
4810 5032 1.073125 CCAACCCCGTATGCATATGGA 59.927 52.381 36.51 4.57 41.06 3.41
4811 5033 1.533625 CCAACCCCGTATGCATATGG 58.466 55.000 30.70 30.70 38.81 2.74
4812 5034 1.202879 ACCCAACCCCGTATGCATATG 60.203 52.381 17.55 17.55 0.00 1.78
4813 5035 1.145571 ACCCAACCCCGTATGCATAT 58.854 50.000 10.16 0.00 0.00 1.78
4814 5036 0.181587 CACCCAACCCCGTATGCATA 59.818 55.000 1.16 1.16 0.00 3.14
4815 5037 1.077068 CACCCAACCCCGTATGCAT 60.077 57.895 3.79 3.79 0.00 3.96
4816 5038 2.353189 CACCCAACCCCGTATGCA 59.647 61.111 0.00 0.00 0.00 3.96
4817 5039 3.138128 GCACCCAACCCCGTATGC 61.138 66.667 0.00 0.00 0.00 3.14
4818 5040 1.077068 ATGCACCCAACCCCGTATG 60.077 57.895 0.00 0.00 0.00 2.39
4819 5041 1.226262 GATGCACCCAACCCCGTAT 59.774 57.895 0.00 0.00 0.00 3.06
4820 5042 1.567208 ATGATGCACCCAACCCCGTA 61.567 55.000 0.00 0.00 0.00 4.02
4821 5043 2.917897 ATGATGCACCCAACCCCGT 61.918 57.895 0.00 0.00 0.00 5.28
4822 5044 2.044053 ATGATGCACCCAACCCCG 60.044 61.111 0.00 0.00 0.00 5.73
4823 5045 1.305213 ACATGATGCACCCAACCCC 60.305 57.895 0.00 0.00 0.00 4.95
4824 5046 1.892338 CACATGATGCACCCAACCC 59.108 57.895 0.00 0.00 0.00 4.11
4834 5056 1.386525 CCCCCGGAAAGCACATGATG 61.387 60.000 0.73 0.00 0.00 3.07
4835 5057 1.076777 CCCCCGGAAAGCACATGAT 60.077 57.895 0.73 0.00 0.00 2.45
4836 5058 2.354729 CCCCCGGAAAGCACATGA 59.645 61.111 0.73 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.