Multiple sequence alignment - TraesCS2D01G211000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G211000 chr2D 100.000 3703 0 0 1 3703 168133118 168129416 0.000000e+00 6839.0
1 TraesCS2D01G211000 chr2D 88.710 186 14 2 3462 3640 168091187 168091002 1.730000e-53 220.0
2 TraesCS2D01G211000 chr2D 96.053 76 2 1 3121 3195 168129879 168129804 5.020000e-24 122.0
3 TraesCS2D01G211000 chr2D 96.053 76 2 1 3240 3315 168129998 168129924 5.020000e-24 122.0
4 TraesCS2D01G211000 chr2D 98.077 52 1 0 3170 3221 168129897 168129846 1.420000e-14 91.6
5 TraesCS2D01G211000 chr2D 98.077 52 1 0 3222 3273 168129949 168129898 1.420000e-14 91.6
6 TraesCS2D01G211000 chr2D 97.059 34 0 1 3121 3153 168129931 168129898 5.170000e-04 56.5
7 TraesCS2D01G211000 chr2D 97.059 34 0 1 3188 3221 168129998 168129966 5.170000e-04 56.5
8 TraesCS2D01G211000 chr2A 92.528 1539 64 18 1669 3195 182570384 182571883 0.000000e+00 2158.0
9 TraesCS2D01G211000 chr2A 91.138 1230 60 17 433 1639 182569180 182570383 0.000000e+00 1622.0
10 TraesCS2D01G211000 chr2A 98.745 239 2 1 3244 3482 182571812 182572049 1.230000e-114 424.0
11 TraesCS2D01G211000 chr2A 81.513 476 41 23 1 447 182568708 182569165 7.610000e-92 348.0
12 TraesCS2D01G211000 chr2A 89.785 186 12 3 3462 3640 182686479 182686664 8.000000e-57 231.0
13 TraesCS2D01G211000 chr2A 88.889 81 8 1 3560 3640 182573665 182573744 8.460000e-17 99.0
14 TraesCS2D01G211000 chr2A 100.000 30 0 0 3192 3221 182571812 182571841 5.170000e-04 56.5
15 TraesCS2D01G211000 chr2B 92.912 1439 66 22 1563 2989 230217624 230219038 0.000000e+00 2060.0
16 TraesCS2D01G211000 chr2B 92.890 858 43 8 420 1266 230216752 230217602 0.000000e+00 1230.0
17 TraesCS2D01G211000 chr2B 93.130 262 11 4 3386 3640 230234412 230234673 9.710000e-101 377.0
18 TraesCS2D01G211000 chr2B 90.090 222 10 4 3000 3221 230219116 230219325 1.010000e-70 278.0
19 TraesCS2D01G211000 chr2B 94.915 177 9 0 3219 3395 230219271 230219447 1.010000e-70 278.0
20 TraesCS2D01G211000 chr2B 96.552 87 3 0 337 423 230216346 230216432 1.070000e-30 145.0
21 TraesCS2D01G211000 chr2B 97.143 70 2 0 3246 3315 230219230 230219299 6.500000e-23 119.0
22 TraesCS2D01G211000 chr2B 96.970 33 1 0 3608 3640 230234684 230234716 5.170000e-04 56.5
23 TraesCS2D01G211000 chr2B 100.000 28 0 0 3194 3221 230219230 230219257 7.000000e-03 52.8
24 TraesCS2D01G211000 chr6B 90.216 787 44 16 2012 2780 572488151 572487380 0.000000e+00 996.0
25 TraesCS2D01G211000 chr1B 98.361 61 1 0 2365 2425 660464998 660464938 1.410000e-19 108.0
26 TraesCS2D01G211000 chr7B 93.939 66 3 1 3639 3703 12778981 12778916 8.460000e-17 99.0
27 TraesCS2D01G211000 chr3A 93.443 61 3 1 3642 3702 734243390 734243331 5.090000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G211000 chr2D 168129416 168133118 3702 True 1054.171429 6839 97.482571 1 3703 7 chr2D.!!$R2 3702
1 TraesCS2D01G211000 chr2A 182568708 182573744 5036 False 784.583333 2158 92.135500 1 3640 6 chr2A.!!$F2 3639
2 TraesCS2D01G211000 chr2B 230216346 230219447 3101 False 594.685714 2060 94.928857 337 3395 7 chr2B.!!$F1 3058
3 TraesCS2D01G211000 chr6B 572487380 572488151 771 True 996.000000 996 90.216000 2012 2780 1 chr6B.!!$R1 768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 1210 0.042581 TGCCCCACCTCTCAGTGATA 59.957 55.0 0.00 0.0 40.34 2.15 F
1107 1508 0.179111 CAAGCGCAATCGGACTAGGA 60.179 55.0 11.47 0.0 35.95 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2328 2764 0.528684 GCCATCGTCTTCTTCCTCCG 60.529 60.000 0.0 0.0 0.0 4.63 R
2733 3180 1.261619 GAGTTCCAACACTGACGCTTG 59.738 52.381 0.0 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 3.797039 CTCTACCGAAGAATCCAATGCA 58.203 45.455 0.00 0.00 32.46 3.96
50 51 1.086696 ACCGAAGAATCCAATGCACG 58.913 50.000 0.00 0.00 0.00 5.34
53 54 2.002586 CGAAGAATCCAATGCACGTCT 58.997 47.619 0.00 0.00 0.00 4.18
66 67 1.702886 CACGTCTAGTGTGAGGCTTG 58.297 55.000 10.99 0.00 45.51 4.01
72 73 0.610174 TAGTGTGAGGCTTGAGGCAG 59.390 55.000 7.34 0.00 44.01 4.85
98 99 1.586422 CATTGCCTCTGTACCATCCG 58.414 55.000 0.00 0.00 0.00 4.18
101 102 1.337384 TGCCTCTGTACCATCCGCAT 61.337 55.000 0.00 0.00 0.00 4.73
115 116 3.358111 TCCGCATCCATGGTTTTCTTA 57.642 42.857 12.58 0.00 0.00 2.10
132 133 1.535462 CTTAACTGTTGGGAAGTGGCG 59.465 52.381 2.69 0.00 0.00 5.69
144 145 2.223618 GGAAGTGGCGTTTTGCTTGTAA 60.224 45.455 0.00 0.00 45.43 2.41
148 149 2.924290 GTGGCGTTTTGCTTGTAACAAA 59.076 40.909 0.00 0.00 45.43 2.83
149 150 3.553917 GTGGCGTTTTGCTTGTAACAAAT 59.446 39.130 0.00 0.00 45.43 2.32
151 152 5.232414 GTGGCGTTTTGCTTGTAACAAATTA 59.768 36.000 0.00 0.00 45.43 1.40
152 153 5.986135 TGGCGTTTTGCTTGTAACAAATTAT 59.014 32.000 0.00 0.00 45.43 1.28
154 155 7.652105 TGGCGTTTTGCTTGTAACAAATTATTA 59.348 29.630 0.00 0.00 45.43 0.98
189 190 7.379750 ACACAAAGAGAGAGTATTTACCTGTC 58.620 38.462 0.00 0.00 0.00 3.51
195 196 7.314393 AGAGAGAGTATTTACCTGTCGAAAAC 58.686 38.462 0.00 0.00 0.00 2.43
199 200 7.095270 AGAGTATTTACCTGTCGAAAACGAAT 58.905 34.615 0.00 0.00 0.00 3.34
202 203 9.374838 AGTATTTACCTGTCGAAAACGAATAAT 57.625 29.630 0.00 0.00 0.00 1.28
203 204 9.417284 GTATTTACCTGTCGAAAACGAATAATG 57.583 33.333 0.00 0.00 0.00 1.90
204 205 4.336532 ACCTGTCGAAAACGAATAATGC 57.663 40.909 0.00 0.00 0.00 3.56
205 206 3.749088 ACCTGTCGAAAACGAATAATGCA 59.251 39.130 0.00 0.00 0.00 3.96
206 207 4.394920 ACCTGTCGAAAACGAATAATGCAT 59.605 37.500 0.00 0.00 0.00 3.96
209 211 6.021468 CCTGTCGAAAACGAATAATGCATTTC 60.021 38.462 18.75 9.16 0.00 2.17
222 224 4.524802 ATGCATTTCCCTGAAGATACCA 57.475 40.909 0.00 0.00 0.00 3.25
227 229 1.140312 TCCCTGAAGATACCATGGCC 58.860 55.000 13.04 0.00 0.00 5.36
232 234 1.837439 TGAAGATACCATGGCCGACTT 59.163 47.619 13.04 12.30 0.00 3.01
233 235 3.035363 TGAAGATACCATGGCCGACTTA 58.965 45.455 13.04 0.00 0.00 2.24
259 261 4.932200 ACCAGAGTCTCTTAAATGAAAGCG 59.068 41.667 0.00 0.00 0.00 4.68
262 264 5.406780 CAGAGTCTCTTAAATGAAAGCGTGT 59.593 40.000 0.00 0.00 0.00 4.49
307 313 3.243873 TGCGGGAGAATTAGTCAGCATAG 60.244 47.826 5.91 0.00 0.00 2.23
310 316 3.071602 GGGAGAATTAGTCAGCATAGGCA 59.928 47.826 0.67 0.00 44.61 4.75
314 320 6.936900 GGAGAATTAGTCAGCATAGGCATAAA 59.063 38.462 0.67 0.00 44.61 1.40
315 321 7.445402 GGAGAATTAGTCAGCATAGGCATAAAA 59.555 37.037 0.67 0.00 44.61 1.52
317 323 8.844244 AGAATTAGTCAGCATAGGCATAAAAAG 58.156 33.333 0.67 0.00 44.61 2.27
319 325 8.930846 ATTAGTCAGCATAGGCATAAAAAGAT 57.069 30.769 0.67 0.00 44.61 2.40
436 788 0.254747 TGCTAATCCCCTTTCCCACG 59.745 55.000 0.00 0.00 0.00 4.94
442 823 0.330267 TCCCCTTTCCCACGGATTTC 59.670 55.000 0.00 0.00 0.00 2.17
557 938 2.203153 AGCCACCACGTCACCAAC 60.203 61.111 0.00 0.00 0.00 3.77
558 939 3.284449 GCCACCACGTCACCAACC 61.284 66.667 0.00 0.00 0.00 3.77
559 940 2.593436 CCACCACGTCACCAACCC 60.593 66.667 0.00 0.00 0.00 4.11
560 941 2.593436 CACCACGTCACCAACCCC 60.593 66.667 0.00 0.00 0.00 4.95
561 942 3.091190 ACCACGTCACCAACCCCA 61.091 61.111 0.00 0.00 0.00 4.96
562 943 2.281484 CCACGTCACCAACCCCAG 60.281 66.667 0.00 0.00 0.00 4.45
563 944 2.978010 CACGTCACCAACCCCAGC 60.978 66.667 0.00 0.00 0.00 4.85
564 945 4.265056 ACGTCACCAACCCCAGCC 62.265 66.667 0.00 0.00 0.00 4.85
565 946 4.263572 CGTCACCAACCCCAGCCA 62.264 66.667 0.00 0.00 0.00 4.75
566 947 2.597510 GTCACCAACCCCAGCCAC 60.598 66.667 0.00 0.00 0.00 5.01
567 948 4.263572 TCACCAACCCCAGCCACG 62.264 66.667 0.00 0.00 0.00 4.94
728 1121 7.425606 CCCGATTTCGAAAAGAATATTTCCAT 58.574 34.615 15.66 0.00 43.02 3.41
789 1183 2.386661 CACTGACTGGTGGACCATAC 57.613 55.000 0.00 0.00 46.46 2.39
793 1187 2.431057 CTGACTGGTGGACCATACTACC 59.569 54.545 0.00 0.00 46.46 3.18
799 1193 1.413077 GTGGACCATACTACCTCCTGC 59.587 57.143 0.00 0.00 0.00 4.85
815 1209 1.229625 TGCCCCACCTCTCAGTGAT 60.230 57.895 0.00 0.00 40.34 3.06
816 1210 0.042581 TGCCCCACCTCTCAGTGATA 59.957 55.000 0.00 0.00 40.34 2.15
817 1211 0.755686 GCCCCACCTCTCAGTGATAG 59.244 60.000 0.00 0.00 40.34 2.08
828 1222 5.508825 CCTCTCAGTGATAGTACATTCTGGC 60.509 48.000 4.95 0.00 0.00 4.85
829 1223 4.342378 TCTCAGTGATAGTACATTCTGGCC 59.658 45.833 0.00 0.00 0.00 5.36
869 1263 1.283029 TGAGCCCAAAAGATCTCCTGG 59.717 52.381 13.77 13.77 0.00 4.45
1093 1488 0.449388 GTTTCTCCATCAGCCAAGCG 59.551 55.000 0.00 0.00 0.00 4.68
1102 1503 3.127533 AGCCAAGCGCAATCGGAC 61.128 61.111 11.47 0.76 41.38 4.79
1107 1508 0.179111 CAAGCGCAATCGGACTAGGA 60.179 55.000 11.47 0.00 35.95 2.94
1218 1629 5.825507 ACATTCACTTGCTCTGTTTCTTTC 58.174 37.500 0.00 0.00 0.00 2.62
1220 1631 2.872245 TCACTTGCTCTGTTTCTTTCCG 59.128 45.455 0.00 0.00 0.00 4.30
1249 1660 2.038033 TCGTGGGATCTCGTTTCCTTTT 59.962 45.455 0.00 0.00 33.53 2.27
1329 1754 6.422400 GGAATCGTTTATTTTGTGCTGGAAAA 59.578 34.615 0.00 0.00 0.00 2.29
1358 1783 2.094100 TGCAATCCCCCAAACTTTGA 57.906 45.000 2.87 0.00 0.00 2.69
1366 1791 3.117322 TCCCCCAAACTTTGATGTTCTGA 60.117 43.478 2.87 0.00 0.00 3.27
1381 1806 3.002791 GTTCTGATCCGATTGTTGCTCA 58.997 45.455 0.00 0.00 0.00 4.26
1461 1886 4.955925 TTTGAAAGTGCGTTGAAGAGAA 57.044 36.364 0.00 0.00 0.00 2.87
1472 1897 5.529430 TGCGTTGAAGAGAAGTTGGATTTTA 59.471 36.000 0.00 0.00 0.00 1.52
1548 1973 2.084546 GTCTCTCGAATTGGGGGTTTG 58.915 52.381 0.00 0.00 0.00 2.93
1561 1986 5.060427 TGGGGGTTTGTAGATTCATATGG 57.940 43.478 2.13 0.00 0.00 2.74
1585 2010 0.823356 GGCTGCTGGGTGTTTCAGAA 60.823 55.000 0.00 0.00 34.36 3.02
1594 2019 4.090090 TGGGTGTTTCAGAAGTTTCCAAA 58.910 39.130 0.00 0.00 0.00 3.28
1595 2020 4.081917 TGGGTGTTTCAGAAGTTTCCAAAC 60.082 41.667 8.85 8.85 39.17 2.93
1600 2025 7.041712 GGTGTTTCAGAAGTTTCCAAACAAAAA 60.042 33.333 15.71 0.00 39.85 1.94
1601 2026 7.796660 GTGTTTCAGAAGTTTCCAAACAAAAAC 59.203 33.333 15.71 7.54 39.85 2.43
1626 2051 8.227791 ACTGCGTTTAATAGTTGAATTAGTGTG 58.772 33.333 0.00 0.00 0.00 3.82
1645 2070 4.757149 GTGTGGCAAAGTACTTCTCTGATT 59.243 41.667 8.95 0.00 0.00 2.57
1662 2088 5.891198 TCTGATTGGGATTTTCTTTCCTCA 58.109 37.500 0.00 0.00 33.53 3.86
1667 2093 6.448369 TTGGGATTTTCTTTCCTCAGTCTA 57.552 37.500 0.00 0.00 33.53 2.59
1673 2099 8.888716 GGATTTTCTTTCCTCAGTCTAGAATTC 58.111 37.037 0.00 0.00 0.00 2.17
1728 2154 7.936950 TCTTAATAATTCTGTGCAGATCTCG 57.063 36.000 2.47 0.00 37.29 4.04
1729 2155 7.492524 TCTTAATAATTCTGTGCAGATCTCGT 58.507 34.615 2.47 0.00 37.29 4.18
1770 2196 3.120854 GCAGTAGAGTTCAACAAGCGAAG 60.121 47.826 0.00 0.00 0.00 3.79
1794 2220 2.094026 GGAAATGGCAATTGGACAGACC 60.094 50.000 7.72 0.00 38.50 3.85
1974 2400 1.153549 GGACGACACCATCTGCCTC 60.154 63.158 0.00 0.00 0.00 4.70
1998 2424 2.168313 TGAATCGCTGCCTCAAGATGTA 59.832 45.455 0.00 0.00 0.00 2.29
2010 2436 6.770785 TGCCTCAAGATGTATTGGTAATTACC 59.229 38.462 25.22 25.22 46.62 2.85
2032 2458 1.214589 CCAGACCCGTAGTGTTCCG 59.785 63.158 0.00 0.00 0.00 4.30
2052 2478 3.728718 CCGTTTGAAATCCGTTCTTGTTG 59.271 43.478 0.00 0.00 37.13 3.33
2089 2521 2.370189 TCCCAATTTGGCGGAACATTTT 59.630 40.909 10.10 0.00 35.79 1.82
2187 2619 3.620966 GCAGTAAGCACTTCTGATCCCTT 60.621 47.826 11.55 0.00 44.79 3.95
2188 2620 4.383118 GCAGTAAGCACTTCTGATCCCTTA 60.383 45.833 11.55 0.00 44.79 2.69
2194 2626 3.133003 GCACTTCTGATCCCTTACTGCTA 59.867 47.826 0.00 0.00 0.00 3.49
2197 2629 5.582665 CACTTCTGATCCCTTACTGCTAAAC 59.417 44.000 0.00 0.00 0.00 2.01
2204 2636 3.335484 TCCCTTACTGCTAAACCCCAAAT 59.665 43.478 0.00 0.00 0.00 2.32
2207 2639 2.231716 ACTGCTAAACCCCAAATCCC 57.768 50.000 0.00 0.00 0.00 3.85
2223 2655 2.459060 TCCCGCAGTGAAATTCGTTA 57.541 45.000 0.00 0.00 0.00 3.18
2231 2663 4.722194 CAGTGAAATTCGTTACCCATGTG 58.278 43.478 0.00 0.00 0.00 3.21
2232 2664 3.756434 AGTGAAATTCGTTACCCATGTGG 59.244 43.478 0.00 0.00 41.37 4.17
2233 2665 3.754323 GTGAAATTCGTTACCCATGTGGA 59.246 43.478 0.00 0.00 37.39 4.02
2234 2666 4.006989 TGAAATTCGTTACCCATGTGGAG 58.993 43.478 0.00 0.00 37.39 3.86
2235 2667 3.713826 AATTCGTTACCCATGTGGAGT 57.286 42.857 0.00 0.00 37.39 3.85
2236 2668 4.829872 AATTCGTTACCCATGTGGAGTA 57.170 40.909 0.00 0.00 37.39 2.59
2543 2981 0.604073 TCATAGGCCACGTCGAACAA 59.396 50.000 5.01 0.00 0.00 2.83
2640 3086 1.996191 GATTGAAGAGGACACGCTGTC 59.004 52.381 8.94 8.94 46.23 3.51
2707 3154 2.634453 TCTGAGTGTTGGAGCTCATCAA 59.366 45.455 17.19 8.71 40.45 2.57
2756 3205 1.195448 GCGTCAGTGTTGGAACTCATG 59.805 52.381 0.00 0.00 0.00 3.07
2897 3346 6.708285 ACTTCACCCTGTTTACCTTGTATAG 58.292 40.000 0.00 0.00 0.00 1.31
2899 3348 3.869246 CACCCTGTTTACCTTGTATAGCG 59.131 47.826 0.00 0.00 0.00 4.26
2900 3349 3.118519 ACCCTGTTTACCTTGTATAGCGG 60.119 47.826 0.00 0.00 0.00 5.52
2901 3350 3.133362 CCCTGTTTACCTTGTATAGCGGA 59.867 47.826 0.00 0.00 0.00 5.54
2902 3351 4.202326 CCCTGTTTACCTTGTATAGCGGAT 60.202 45.833 0.00 0.00 0.00 4.18
2903 3352 5.365619 CCTGTTTACCTTGTATAGCGGATT 58.634 41.667 0.00 0.00 0.00 3.01
2904 3353 6.463331 CCCTGTTTACCTTGTATAGCGGATTA 60.463 42.308 0.00 0.00 0.00 1.75
2905 3354 6.645415 CCTGTTTACCTTGTATAGCGGATTAG 59.355 42.308 0.00 0.00 0.00 1.73
2906 3355 7.116075 TGTTTACCTTGTATAGCGGATTAGT 57.884 36.000 0.00 0.00 0.00 2.24
2907 3356 6.982141 TGTTTACCTTGTATAGCGGATTAGTG 59.018 38.462 0.00 0.00 0.00 2.74
2908 3357 3.991367 ACCTTGTATAGCGGATTAGTGC 58.009 45.455 0.00 0.00 0.00 4.40
2909 3358 3.641906 ACCTTGTATAGCGGATTAGTGCT 59.358 43.478 0.00 0.00 45.04 4.40
2910 3359 4.101119 ACCTTGTATAGCGGATTAGTGCTT 59.899 41.667 0.00 0.00 42.48 3.91
2911 3360 4.449068 CCTTGTATAGCGGATTAGTGCTTG 59.551 45.833 0.00 0.00 42.48 4.01
2912 3361 4.665833 TGTATAGCGGATTAGTGCTTGT 57.334 40.909 0.00 0.00 42.48 3.16
2913 3362 5.777850 TGTATAGCGGATTAGTGCTTGTA 57.222 39.130 0.00 0.00 42.48 2.41
2914 3363 6.340962 TGTATAGCGGATTAGTGCTTGTAT 57.659 37.500 0.00 0.00 42.48 2.29
2915 3364 7.457024 TGTATAGCGGATTAGTGCTTGTATA 57.543 36.000 0.00 0.00 42.48 1.47
2926 3393 3.932710 AGTGCTTGTATATGTGTGGTTCG 59.067 43.478 0.00 0.00 0.00 3.95
2932 3399 6.561533 GCTTGTATATGTGTGGTTCGTTATCG 60.562 42.308 0.00 0.00 38.55 2.92
2939 3406 4.626604 TGTGTGGTTCGTTATCGGAAATAC 59.373 41.667 0.00 0.00 37.69 1.89
3041 3574 5.481824 TGAAGTCACCACTCTGTAGAATCAT 59.518 40.000 0.00 0.00 29.93 2.45
3131 3665 4.274214 CGAAATATGATGCTGAGCCTCAAA 59.726 41.667 16.04 0.00 36.84 2.69
3132 3666 5.511234 AAATATGATGCTGAGCCTCAAAC 57.489 39.130 16.04 0.00 36.84 2.93
3133 3667 2.803030 ATGATGCTGAGCCTCAAACT 57.197 45.000 16.04 0.00 36.84 2.66
3134 3668 1.817357 TGATGCTGAGCCTCAAACTG 58.183 50.000 10.00 0.00 30.90 3.16
3135 3669 1.093159 GATGCTGAGCCTCAAACTGG 58.907 55.000 0.23 0.00 0.00 4.00
3136 3670 0.403271 ATGCTGAGCCTCAAACTGGT 59.597 50.000 0.23 0.00 0.00 4.00
3137 3671 0.183492 TGCTGAGCCTCAAACTGGTT 59.817 50.000 0.23 0.00 0.00 3.67
3138 3672 0.877743 GCTGAGCCTCAAACTGGTTC 59.122 55.000 0.00 0.00 35.72 3.62
3139 3673 1.528129 CTGAGCCTCAAACTGGTTCC 58.472 55.000 0.00 0.00 34.50 3.62
3140 3674 0.250295 TGAGCCTCAAACTGGTTCCG 60.250 55.000 0.00 0.00 34.50 4.30
3141 3675 0.034896 GAGCCTCAAACTGGTTCCGA 59.965 55.000 0.00 0.00 0.00 4.55
3142 3676 0.472471 AGCCTCAAACTGGTTCCGAA 59.528 50.000 0.00 0.00 0.00 4.30
3143 3677 0.875059 GCCTCAAACTGGTTCCGAAG 59.125 55.000 0.00 0.00 0.00 3.79
3156 3690 2.254350 CGAAGGAGACGCGTGTGA 59.746 61.111 20.70 0.00 0.00 3.58
3157 3691 1.154016 CGAAGGAGACGCGTGTGAT 60.154 57.895 20.70 0.00 0.00 3.06
3158 3692 0.098200 CGAAGGAGACGCGTGTGATA 59.902 55.000 20.70 0.00 0.00 2.15
3159 3693 1.466866 CGAAGGAGACGCGTGTGATAA 60.467 52.381 20.70 0.00 0.00 1.75
3160 3694 2.186076 GAAGGAGACGCGTGTGATAAG 58.814 52.381 20.70 0.00 0.00 1.73
3161 3695 0.179134 AGGAGACGCGTGTGATAAGC 60.179 55.000 20.70 0.00 0.00 3.09
3162 3696 0.457853 GGAGACGCGTGTGATAAGCA 60.458 55.000 20.70 0.00 32.98 3.91
3163 3697 0.917259 GAGACGCGTGTGATAAGCAG 59.083 55.000 20.70 0.00 32.98 4.24
3164 3698 1.078759 AGACGCGTGTGATAAGCAGC 61.079 55.000 20.70 0.00 32.98 5.25
3165 3699 2.025359 GACGCGTGTGATAAGCAGCC 62.025 60.000 20.70 0.00 32.98 4.85
3166 3700 1.811266 CGCGTGTGATAAGCAGCCT 60.811 57.895 0.00 0.00 32.98 4.58
3167 3701 1.717937 GCGTGTGATAAGCAGCCTG 59.282 57.895 0.00 0.00 33.68 4.85
3168 3702 1.709147 GCGTGTGATAAGCAGCCTGG 61.709 60.000 0.00 0.00 33.68 4.45
3169 3703 0.391661 CGTGTGATAAGCAGCCTGGT 60.392 55.000 0.00 0.00 0.00 4.00
3170 3704 1.826385 GTGTGATAAGCAGCCTGGTT 58.174 50.000 14.30 14.30 41.42 3.67
3171 3705 1.740025 GTGTGATAAGCAGCCTGGTTC 59.260 52.381 13.18 0.11 39.08 3.62
3172 3706 1.350684 TGTGATAAGCAGCCTGGTTCA 59.649 47.619 13.18 3.12 39.08 3.18
3173 3707 2.025981 TGTGATAAGCAGCCTGGTTCAT 60.026 45.455 13.18 5.48 39.08 2.57
3174 3708 3.019564 GTGATAAGCAGCCTGGTTCATT 58.980 45.455 13.18 0.00 39.08 2.57
3175 3709 3.018856 TGATAAGCAGCCTGGTTCATTG 58.981 45.455 13.18 0.00 39.08 2.82
3176 3710 2.877097 TAAGCAGCCTGGTTCATTGA 57.123 45.000 13.18 0.00 39.08 2.57
3177 3711 1.999648 AAGCAGCCTGGTTCATTGAA 58.000 45.000 2.71 0.00 31.72 2.69
3178 3712 2.226962 AGCAGCCTGGTTCATTGAAT 57.773 45.000 1.78 0.00 0.00 2.57
3179 3713 2.097825 AGCAGCCTGGTTCATTGAATC 58.902 47.619 1.78 2.19 0.00 2.52
3180 3714 2.097825 GCAGCCTGGTTCATTGAATCT 58.902 47.619 10.84 0.00 0.00 2.40
3181 3715 2.159282 GCAGCCTGGTTCATTGAATCTG 60.159 50.000 10.84 9.88 0.00 2.90
3182 3716 2.097825 AGCCTGGTTCATTGAATCTGC 58.902 47.619 10.84 12.36 0.00 4.26
3183 3717 1.820519 GCCTGGTTCATTGAATCTGCA 59.179 47.619 10.84 0.00 0.00 4.41
3184 3718 2.416431 GCCTGGTTCATTGAATCTGCAC 60.416 50.000 10.84 2.56 0.00 4.57
3185 3719 2.165030 CCTGGTTCATTGAATCTGCACC 59.835 50.000 10.84 3.91 31.49 5.01
3186 3720 3.087031 CTGGTTCATTGAATCTGCACCT 58.913 45.455 10.84 0.00 32.03 4.00
3187 3721 3.084039 TGGTTCATTGAATCTGCACCTC 58.916 45.455 10.84 0.00 32.03 3.85
3188 3722 3.245016 TGGTTCATTGAATCTGCACCTCT 60.245 43.478 10.84 0.00 32.03 3.69
3189 3723 3.128242 GGTTCATTGAATCTGCACCTCTG 59.872 47.826 1.78 0.00 28.71 3.35
3190 3724 2.362736 TCATTGAATCTGCACCTCTGC 58.637 47.619 0.00 0.00 44.52 4.26
3198 3732 2.033141 GCACCTCTGCAGCCTCAA 59.967 61.111 9.47 0.00 43.62 3.02
3199 3733 1.601759 GCACCTCTGCAGCCTCAAA 60.602 57.895 9.47 0.00 43.62 2.69
3200 3734 1.860484 GCACCTCTGCAGCCTCAAAC 61.860 60.000 9.47 0.00 43.62 2.93
3201 3735 0.250640 CACCTCTGCAGCCTCAAACT 60.251 55.000 9.47 0.00 0.00 2.66
3202 3736 0.250640 ACCTCTGCAGCCTCAAACTG 60.251 55.000 9.47 0.00 38.22 3.16
3203 3737 0.959372 CCTCTGCAGCCTCAAACTGG 60.959 60.000 9.47 0.00 35.62 4.00
3204 3738 0.250640 CTCTGCAGCCTCAAACTGGT 60.251 55.000 9.47 0.00 35.62 4.00
3205 3739 0.183492 TCTGCAGCCTCAAACTGGTT 59.817 50.000 9.47 0.00 35.62 3.67
3206 3740 0.595095 CTGCAGCCTCAAACTGGTTC 59.405 55.000 0.00 0.00 35.62 3.62
3207 3741 0.823356 TGCAGCCTCAAACTGGTTCC 60.823 55.000 0.00 0.00 35.62 3.62
3208 3742 1.856265 GCAGCCTCAAACTGGTTCCG 61.856 60.000 0.00 0.00 35.62 4.30
3209 3743 0.250295 CAGCCTCAAACTGGTTCCGA 60.250 55.000 0.00 0.00 0.00 4.55
3210 3744 0.472471 AGCCTCAAACTGGTTCCGAA 59.528 50.000 0.00 0.00 0.00 4.30
3211 3745 0.875059 GCCTCAAACTGGTTCCGAAG 59.125 55.000 0.00 0.00 0.00 3.79
3224 3758 4.238385 CGAAGGAGACGCGTTTCA 57.762 55.556 28.15 0.00 0.00 2.69
3225 3759 2.738147 CGAAGGAGACGCGTTTCAT 58.262 52.632 28.15 20.76 0.00 2.57
3226 3760 1.068474 CGAAGGAGACGCGTTTCATT 58.932 50.000 26.50 26.50 0.00 2.57
3227 3761 1.201812 CGAAGGAGACGCGTTTCATTG 60.202 52.381 30.26 19.11 0.00 2.82
3228 3762 2.066262 GAAGGAGACGCGTTTCATTGA 58.934 47.619 30.26 0.00 0.00 2.57
3229 3763 2.163818 AGGAGACGCGTTTCATTGAA 57.836 45.000 28.15 0.00 0.00 2.69
3230 3764 2.699954 AGGAGACGCGTTTCATTGAAT 58.300 42.857 28.15 6.58 0.00 2.57
3231 3765 2.673368 AGGAGACGCGTTTCATTGAATC 59.327 45.455 28.15 11.22 0.00 2.52
3232 3766 2.673368 GGAGACGCGTTTCATTGAATCT 59.327 45.455 28.15 10.59 0.00 2.40
3233 3767 3.484229 GGAGACGCGTTTCATTGAATCTG 60.484 47.826 28.15 0.00 0.00 2.90
3234 3768 2.159653 AGACGCGTTTCATTGAATCTGC 60.160 45.455 15.53 6.98 0.00 4.26
3235 3769 1.174352 CGCGTTTCATTGAATCTGCG 58.826 50.000 20.73 20.73 32.92 5.18
3236 3770 0.909843 GCGTTTCATTGAATCTGCGC 59.090 50.000 0.00 0.00 36.97 6.09
3237 3771 1.538276 CGTTTCATTGAATCTGCGCC 58.462 50.000 4.18 0.00 0.00 6.53
3238 3772 1.131126 CGTTTCATTGAATCTGCGCCT 59.869 47.619 4.18 0.00 0.00 5.52
3239 3773 2.789092 CGTTTCATTGAATCTGCGCCTC 60.789 50.000 4.18 0.00 0.00 4.70
3240 3774 2.408271 TTCATTGAATCTGCGCCTCT 57.592 45.000 4.18 0.00 0.00 3.69
3241 3775 1.660167 TCATTGAATCTGCGCCTCTG 58.340 50.000 4.18 0.00 0.00 3.35
3242 3776 0.029035 CATTGAATCTGCGCCTCTGC 59.971 55.000 4.18 0.00 0.00 4.26
3243 3777 0.393402 ATTGAATCTGCGCCTCTGCA 60.393 50.000 4.18 0.00 43.95 4.41
3371 3973 1.519408 TTACCGAGGAAAACAGCAGC 58.481 50.000 0.00 0.00 0.00 5.25
3482 4084 4.040936 TGTTAACAACCCACTGGCATAT 57.959 40.909 5.64 0.00 33.59 1.78
3483 4085 4.411927 TGTTAACAACCCACTGGCATATT 58.588 39.130 5.64 0.00 33.59 1.28
3485 4087 5.416326 TGTTAACAACCCACTGGCATATTAC 59.584 40.000 5.64 0.00 33.59 1.89
3486 4088 4.316025 AACAACCCACTGGCATATTACT 57.684 40.909 0.00 0.00 33.59 2.24
3488 4090 2.872245 CAACCCACTGGCATATTACTCG 59.128 50.000 0.00 0.00 33.59 4.18
3489 4091 2.394632 ACCCACTGGCATATTACTCGA 58.605 47.619 0.00 0.00 33.59 4.04
3490 4092 2.972713 ACCCACTGGCATATTACTCGAT 59.027 45.455 0.00 0.00 33.59 3.59
3491 4093 3.006967 ACCCACTGGCATATTACTCGATC 59.993 47.826 0.00 0.00 33.59 3.69
3493 4095 4.462834 CCCACTGGCATATTACTCGATCTA 59.537 45.833 0.00 0.00 0.00 1.98
3494 4096 5.393569 CCCACTGGCATATTACTCGATCTAG 60.394 48.000 0.00 0.00 0.00 2.43
3495 4097 5.098893 CACTGGCATATTACTCGATCTAGC 58.901 45.833 0.00 0.00 0.00 3.42
3496 4098 4.767409 ACTGGCATATTACTCGATCTAGCA 59.233 41.667 0.00 0.00 0.00 3.49
3497 4099 5.243954 ACTGGCATATTACTCGATCTAGCAA 59.756 40.000 0.00 0.00 0.00 3.91
3498 4100 5.470368 TGGCATATTACTCGATCTAGCAAC 58.530 41.667 0.00 0.00 0.00 4.17
3500 4102 5.802956 GGCATATTACTCGATCTAGCAACTC 59.197 44.000 0.00 0.00 0.00 3.01
3501 4103 5.802956 GCATATTACTCGATCTAGCAACTCC 59.197 44.000 0.00 0.00 0.00 3.85
3503 4105 4.634184 TTACTCGATCTAGCAACTCCAC 57.366 45.455 0.00 0.00 0.00 4.02
3504 4106 2.729194 ACTCGATCTAGCAACTCCACT 58.271 47.619 0.00 0.00 0.00 4.00
3505 4107 2.685897 ACTCGATCTAGCAACTCCACTC 59.314 50.000 0.00 0.00 0.00 3.51
3506 4108 2.685388 CTCGATCTAGCAACTCCACTCA 59.315 50.000 0.00 0.00 0.00 3.41
3507 4109 2.423892 TCGATCTAGCAACTCCACTCAC 59.576 50.000 0.00 0.00 0.00 3.51
3508 4110 2.792890 CGATCTAGCAACTCCACTCACG 60.793 54.545 0.00 0.00 0.00 4.35
3509 4111 1.905637 TCTAGCAACTCCACTCACGA 58.094 50.000 0.00 0.00 0.00 4.35
3510 4112 2.235891 TCTAGCAACTCCACTCACGAA 58.764 47.619 0.00 0.00 0.00 3.85
3511 4113 2.826128 TCTAGCAACTCCACTCACGAAT 59.174 45.455 0.00 0.00 0.00 3.34
3512 4114 2.550830 AGCAACTCCACTCACGAATT 57.449 45.000 0.00 0.00 0.00 2.17
3513 4115 2.851195 AGCAACTCCACTCACGAATTT 58.149 42.857 0.00 0.00 0.00 1.82
3514 4116 4.002906 AGCAACTCCACTCACGAATTTA 57.997 40.909 0.00 0.00 0.00 1.40
3515 4117 3.997021 AGCAACTCCACTCACGAATTTAG 59.003 43.478 0.00 0.00 0.00 1.85
3516 4118 3.125316 GCAACTCCACTCACGAATTTAGG 59.875 47.826 0.00 0.00 0.00 2.69
3517 4119 4.315803 CAACTCCACTCACGAATTTAGGT 58.684 43.478 0.00 0.00 0.00 3.08
3518 4120 5.475719 CAACTCCACTCACGAATTTAGGTA 58.524 41.667 0.00 0.00 0.00 3.08
3519 4121 5.326200 ACTCCACTCACGAATTTAGGTAG 57.674 43.478 0.00 0.00 0.00 3.18
3520 4122 4.113354 CTCCACTCACGAATTTAGGTAGC 58.887 47.826 0.00 0.00 0.00 3.58
3522 4124 4.020928 TCCACTCACGAATTTAGGTAGCAA 60.021 41.667 0.00 0.00 0.00 3.91
3523 4125 4.876107 CCACTCACGAATTTAGGTAGCAAT 59.124 41.667 0.00 0.00 0.00 3.56
3524 4126 5.354234 CCACTCACGAATTTAGGTAGCAATT 59.646 40.000 0.00 0.00 0.00 2.32
3527 4129 6.761714 ACTCACGAATTTAGGTAGCAATTAGG 59.238 38.462 0.00 0.00 0.00 2.69
3528 4130 6.053005 TCACGAATTTAGGTAGCAATTAGGG 58.947 40.000 0.00 0.00 0.00 3.53
3529 4131 5.820947 CACGAATTTAGGTAGCAATTAGGGT 59.179 40.000 0.00 0.00 0.00 4.34
3530 4132 6.317893 CACGAATTTAGGTAGCAATTAGGGTT 59.682 38.462 0.00 0.00 0.00 4.11
3531 4133 7.496591 CACGAATTTAGGTAGCAATTAGGGTTA 59.503 37.037 0.00 0.00 0.00 2.85
3532 4134 7.496920 ACGAATTTAGGTAGCAATTAGGGTTAC 59.503 37.037 0.00 0.00 0.00 2.50
3535 4137 7.926674 TTTAGGTAGCAATTAGGGTTACAAC 57.073 36.000 0.00 0.00 0.00 3.32
3537 4139 5.742063 AGGTAGCAATTAGGGTTACAACTC 58.258 41.667 0.00 0.00 0.00 3.01
3538 4140 5.487845 AGGTAGCAATTAGGGTTACAACTCT 59.512 40.000 0.00 0.00 43.51 3.24
3539 4141 5.585047 GGTAGCAATTAGGGTTACAACTCTG 59.415 44.000 4.71 0.00 40.68 3.35
3540 4142 4.589908 AGCAATTAGGGTTACAACTCTGG 58.410 43.478 4.71 0.00 40.68 3.86
3542 4144 5.044846 AGCAATTAGGGTTACAACTCTGGAT 60.045 40.000 4.71 0.00 40.68 3.41
3546 5678 4.820894 AGGGTTACAACTCTGGATACAC 57.179 45.455 0.00 0.00 46.17 2.90
3554 5686 2.906354 ACTCTGGATACACGAATTGGC 58.094 47.619 0.00 0.00 46.17 4.52
3562 5701 2.399396 ACACGAATTGGCGAACAAAG 57.601 45.000 0.00 0.00 43.46 2.77
3574 5713 1.827681 GAACAAAGGGGGAAGAGAGC 58.172 55.000 0.00 0.00 0.00 4.09
3576 5715 1.078143 CAAAGGGGGAAGAGAGCCG 60.078 63.158 0.00 0.00 0.00 5.52
3578 5717 4.722535 AGGGGGAAGAGAGCCGCA 62.723 66.667 0.00 0.00 39.89 5.69
3582 5721 4.087892 GGAAGAGAGCCGCAGCCA 62.088 66.667 0.00 0.00 41.25 4.75
3587 5726 4.400961 AGAGCCGCAGCCAGGTTC 62.401 66.667 0.00 0.00 41.25 3.62
3635 5774 2.422597 TGCGTGTGAAGATGGGTTAAG 58.577 47.619 0.00 0.00 0.00 1.85
3640 5779 5.235516 CGTGTGAAGATGGGTTAAGTAGTT 58.764 41.667 0.00 0.00 0.00 2.24
3641 5780 5.699458 CGTGTGAAGATGGGTTAAGTAGTTT 59.301 40.000 0.00 0.00 0.00 2.66
3642 5781 6.204108 CGTGTGAAGATGGGTTAAGTAGTTTT 59.796 38.462 0.00 0.00 0.00 2.43
3643 5782 7.255001 CGTGTGAAGATGGGTTAAGTAGTTTTT 60.255 37.037 0.00 0.00 0.00 1.94
3678 5817 9.983024 TGAACTAGGGATTTTATTGATAAACCA 57.017 29.630 0.00 0.00 32.42 3.67
3682 5821 9.750125 CTAGGGATTTTATTGATAAACCAAAGC 57.250 33.333 0.00 0.00 32.42 3.51
3683 5822 7.564793 AGGGATTTTATTGATAAACCAAAGCC 58.435 34.615 0.00 0.00 32.42 4.35
3684 5823 6.478673 GGGATTTTATTGATAAACCAAAGCCG 59.521 38.462 0.00 0.00 32.42 5.52
3685 5824 7.262048 GGATTTTATTGATAAACCAAAGCCGA 58.738 34.615 0.00 0.00 32.42 5.54
3686 5825 7.762159 GGATTTTATTGATAAACCAAAGCCGAA 59.238 33.333 0.00 0.00 32.42 4.30
3687 5826 8.702163 ATTTTATTGATAAACCAAAGCCGAAG 57.298 30.769 0.00 0.00 32.42 3.79
3688 5827 7.093992 TTTTATTGATAAACCAAAGCCGAAGG 58.906 34.615 0.00 0.00 40.61 3.46
3689 5828 7.039644 TTTTATTGATAAACCAAAGCCGAAGGA 60.040 33.333 0.00 0.00 40.29 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.802948 TTGGATTCTTCGGTAGAGCTC 57.197 47.619 5.27 5.27 33.51 4.09
33 34 2.002586 AGACGTGCATTGGATTCTTCG 58.997 47.619 0.00 0.00 0.00 3.79
48 49 1.542030 CTCAAGCCTCACACTAGACGT 59.458 52.381 0.00 0.00 0.00 4.34
50 51 1.404851 GCCTCAAGCCTCACACTAGAC 60.405 57.143 0.00 0.00 34.35 2.59
53 54 0.610174 CTGCCTCAAGCCTCACACTA 59.390 55.000 0.00 0.00 42.71 2.74
98 99 5.391312 ACAGTTAAGAAAACCATGGATGC 57.609 39.130 21.47 5.37 0.00 3.91
101 102 4.586841 CCCAACAGTTAAGAAAACCATGGA 59.413 41.667 21.47 0.00 0.00 3.41
115 116 0.395173 AACGCCACTTCCCAACAGTT 60.395 50.000 0.00 0.00 0.00 3.16
158 159 9.477484 GTAAATACTCTCTCTTTGTGTTCAGAA 57.523 33.333 0.00 0.00 0.00 3.02
159 160 8.088981 GGTAAATACTCTCTCTTTGTGTTCAGA 58.911 37.037 0.00 0.00 0.00 3.27
160 161 8.091449 AGGTAAATACTCTCTCTTTGTGTTCAG 58.909 37.037 0.00 0.00 0.00 3.02
161 162 7.872993 CAGGTAAATACTCTCTCTTTGTGTTCA 59.127 37.037 0.00 0.00 0.00 3.18
162 163 7.873505 ACAGGTAAATACTCTCTCTTTGTGTTC 59.126 37.037 0.00 0.00 0.00 3.18
163 164 7.736893 ACAGGTAAATACTCTCTCTTTGTGTT 58.263 34.615 0.00 0.00 0.00 3.32
164 165 7.304497 ACAGGTAAATACTCTCTCTTTGTGT 57.696 36.000 0.00 0.00 0.00 3.72
165 166 6.528423 CGACAGGTAAATACTCTCTCTTTGTG 59.472 42.308 0.00 0.00 0.00 3.33
166 167 6.433404 TCGACAGGTAAATACTCTCTCTTTGT 59.567 38.462 0.00 0.00 0.00 2.83
167 168 6.853720 TCGACAGGTAAATACTCTCTCTTTG 58.146 40.000 0.00 0.00 0.00 2.77
168 169 7.463961 TTCGACAGGTAAATACTCTCTCTTT 57.536 36.000 0.00 0.00 0.00 2.52
169 170 7.463961 TTTCGACAGGTAAATACTCTCTCTT 57.536 36.000 0.00 0.00 0.00 2.85
170 171 7.314393 GTTTTCGACAGGTAAATACTCTCTCT 58.686 38.462 0.00 0.00 0.00 3.10
171 172 7.509050 GTTTTCGACAGGTAAATACTCTCTC 57.491 40.000 0.00 0.00 0.00 3.20
189 190 5.229887 CAGGGAAATGCATTATTCGTTTTCG 59.770 40.000 13.39 0.00 45.64 3.46
195 196 5.756195 TCTTCAGGGAAATGCATTATTCG 57.244 39.130 13.39 1.03 0.00 3.34
199 200 6.012337 TGGTATCTTCAGGGAAATGCATTA 57.988 37.500 13.39 0.00 0.00 1.90
202 203 4.209538 CATGGTATCTTCAGGGAAATGCA 58.790 43.478 0.00 0.00 0.00 3.96
203 204 3.571401 CCATGGTATCTTCAGGGAAATGC 59.429 47.826 2.57 0.00 38.23 3.56
204 205 3.571401 GCCATGGTATCTTCAGGGAAATG 59.429 47.826 14.67 0.00 38.23 2.32
205 206 3.437052 GGCCATGGTATCTTCAGGGAAAT 60.437 47.826 14.67 0.00 38.23 2.17
206 207 2.091885 GGCCATGGTATCTTCAGGGAAA 60.092 50.000 14.67 0.00 38.23 3.13
209 211 0.250467 CGGCCATGGTATCTTCAGGG 60.250 60.000 14.67 0.00 38.90 4.45
222 224 2.039879 ACTCTGGTTTTAAGTCGGCCAT 59.960 45.455 2.24 0.00 0.00 4.40
227 229 7.941795 TTTAAGAGACTCTGGTTTTAAGTCG 57.058 36.000 5.55 0.00 43.30 4.18
232 234 8.784043 GCTTTCATTTAAGAGACTCTGGTTTTA 58.216 33.333 5.55 0.00 0.00 1.52
233 235 7.520614 CGCTTTCATTTAAGAGACTCTGGTTTT 60.521 37.037 5.55 0.00 0.00 2.43
325 331 6.889198 TCCTCGTGATTTGAAATATCTCCTT 58.111 36.000 0.00 0.00 0.00 3.36
326 332 6.485830 TCCTCGTGATTTGAAATATCTCCT 57.514 37.500 0.00 0.00 0.00 3.69
327 333 7.065803 TGTTTCCTCGTGATTTGAAATATCTCC 59.934 37.037 0.00 0.00 0.00 3.71
328 334 7.974675 TGTTTCCTCGTGATTTGAAATATCTC 58.025 34.615 0.00 0.00 0.00 2.75
329 335 7.921786 TGTTTCCTCGTGATTTGAAATATCT 57.078 32.000 0.00 0.00 0.00 1.98
330 336 8.020819 TGTTGTTTCCTCGTGATTTGAAATATC 58.979 33.333 0.00 0.00 0.00 1.63
331 337 7.881142 TGTTGTTTCCTCGTGATTTGAAATAT 58.119 30.769 0.00 0.00 0.00 1.28
332 338 7.265647 TGTTGTTTCCTCGTGATTTGAAATA 57.734 32.000 0.00 0.00 0.00 1.40
334 340 5.568685 TGTTGTTTCCTCGTGATTTGAAA 57.431 34.783 0.00 0.00 0.00 2.69
335 341 5.568685 TTGTTGTTTCCTCGTGATTTGAA 57.431 34.783 0.00 0.00 0.00 2.69
436 788 7.894376 TTTGATTGCTTCTGAAATGAAATCC 57.106 32.000 7.51 0.00 0.00 3.01
442 823 6.144854 TCTCGTTTTGATTGCTTCTGAAATG 58.855 36.000 0.00 0.00 0.00 2.32
567 948 4.696805 GTTGGAAGGGGTGGGGGC 62.697 72.222 0.00 0.00 0.00 5.80
568 949 4.360405 CGTTGGAAGGGGTGGGGG 62.360 72.222 0.00 0.00 0.00 5.40
578 971 3.478857 TCTGAAAACTAGCCGTTGGAA 57.521 42.857 0.00 0.00 35.61 3.53
728 1121 1.271488 GGTGTGGACGGTGGGAATTTA 60.271 52.381 0.00 0.00 0.00 1.40
789 1183 2.041265 AGGTGGGGCAGGAGGTAG 59.959 66.667 0.00 0.00 0.00 3.18
793 1187 2.284921 TGAGAGGTGGGGCAGGAG 60.285 66.667 0.00 0.00 0.00 3.69
799 1193 2.166907 ACTATCACTGAGAGGTGGGG 57.833 55.000 5.68 0.00 37.75 4.96
815 1209 1.440060 CGGCGGCCAGAATGTACTA 59.560 57.895 20.71 0.00 0.00 1.82
816 1210 2.186903 CGGCGGCCAGAATGTACT 59.813 61.111 20.71 0.00 0.00 2.73
817 1211 3.573491 GCGGCGGCCAGAATGTAC 61.573 66.667 20.71 0.00 0.00 2.90
855 1249 1.661341 CTCGCCCAGGAGATCTTTTG 58.339 55.000 0.00 0.00 36.08 2.44
1093 1488 2.973945 ACACTTTCCTAGTCCGATTGC 58.026 47.619 0.00 0.00 33.85 3.56
1102 1503 3.427773 GGAGTCGCAGTACACTTTCCTAG 60.428 52.174 0.00 0.00 0.00 3.02
1107 1508 0.038526 CCGGAGTCGCAGTACACTTT 60.039 55.000 0.00 0.00 34.56 2.66
1249 1660 1.067142 CAATCCCGACCTCGAAACAGA 60.067 52.381 0.00 0.00 43.02 3.41
1329 1754 7.009550 AGTTTGGGGGATTGCAAATAATTTTT 58.990 30.769 1.71 0.00 0.00 1.94
1335 1760 4.594920 TCAAAGTTTGGGGGATTGCAAATA 59.405 37.500 15.47 0.00 0.00 1.40
1358 1783 3.614092 AGCAACAATCGGATCAGAACAT 58.386 40.909 0.00 0.00 0.00 2.71
1381 1806 0.108138 AACCGCTTCGCAGAGCTAAT 60.108 50.000 6.72 0.00 38.43 1.73
1403 1828 2.157834 ACAACATTCCGCGAACTACA 57.842 45.000 8.23 0.00 0.00 2.74
1476 1901 7.049754 ACCTCAAGCATTTTCTGAAACAAAAT 58.950 30.769 1.58 0.00 34.42 1.82
1480 1905 5.596836 AACCTCAAGCATTTTCTGAAACA 57.403 34.783 1.58 0.00 0.00 2.83
1481 1906 6.276091 AGAAACCTCAAGCATTTTCTGAAAC 58.724 36.000 1.58 0.00 37.02 2.78
1482 1907 6.469782 AGAAACCTCAAGCATTTTCTGAAA 57.530 33.333 0.00 0.00 37.02 2.69
1486 1911 5.452356 CCAACAGAAACCTCAAGCATTTTCT 60.452 40.000 0.00 0.00 38.55 2.52
1526 1951 1.144057 CCCCCAATTCGAGAGACCG 59.856 63.158 0.00 0.00 41.84 4.79
1527 1952 0.618981 AACCCCCAATTCGAGAGACC 59.381 55.000 0.00 0.00 41.84 3.85
1548 1973 4.453819 GCAGCCACTTCCATATGAATCTAC 59.546 45.833 3.65 0.00 31.06 2.59
1561 1986 1.109323 AAACACCCAGCAGCCACTTC 61.109 55.000 0.00 0.00 0.00 3.01
1585 2010 3.920446 ACGCAGTTTTTGTTTGGAAACT 58.080 36.364 4.02 0.00 44.50 2.66
1601 2026 7.692291 CCACACTAATTCAACTATTAAACGCAG 59.308 37.037 0.00 0.00 0.00 5.18
1622 2047 3.728845 TCAGAGAAGTACTTTGCCACAC 58.271 45.455 10.02 0.00 31.80 3.82
1626 2051 3.691609 CCCAATCAGAGAAGTACTTTGCC 59.308 47.826 10.02 2.40 31.80 4.52
1645 2070 5.785423 TCTAGACTGAGGAAAGAAAATCCCA 59.215 40.000 0.00 0.00 37.71 4.37
1662 2088 8.193438 GGCAGCAAATAAATTGAATTCTAGACT 58.807 33.333 7.05 0.00 41.85 3.24
1667 2093 5.964758 TCGGCAGCAAATAAATTGAATTCT 58.035 33.333 7.05 0.00 41.85 2.40
1673 2099 6.312426 TGGTTAATTCGGCAGCAAATAAATTG 59.688 34.615 0.00 0.00 42.21 2.32
1728 2154 2.805099 GCTGCAGTTGCCTATCTGATAC 59.195 50.000 16.64 0.00 41.18 2.24
1729 2155 2.435437 TGCTGCAGTTGCCTATCTGATA 59.565 45.455 16.64 0.00 41.18 2.15
1770 2196 0.541392 GTCCAATTGCCATTTCCCCC 59.459 55.000 0.00 0.00 0.00 5.40
1794 2220 1.144936 GAGAGACCCCTTCGGCATG 59.855 63.158 0.00 0.00 33.26 4.06
1917 2343 3.989787 TGCTTGCGCAGAGTCCGA 61.990 61.111 11.31 0.00 42.25 4.55
1974 2400 0.731417 CTTGAGGCAGCGATTCAAGG 59.269 55.000 18.37 6.55 42.44 3.61
2010 2436 1.477685 AACACTACGGGTCTGGGGTG 61.478 60.000 0.00 0.00 0.00 4.61
2032 2458 6.721321 TCTACAACAAGAACGGATTTCAAAC 58.279 36.000 0.00 0.00 36.57 2.93
2052 2478 6.699575 AATTGGGATAAGCAACACATCTAC 57.300 37.500 0.00 0.00 0.00 2.59
2177 2609 3.454812 GGGTTTAGCAGTAAGGGATCAGA 59.545 47.826 0.00 0.00 0.00 3.27
2187 2619 2.356330 CGGGATTTGGGGTTTAGCAGTA 60.356 50.000 0.00 0.00 0.00 2.74
2188 2620 1.615919 CGGGATTTGGGGTTTAGCAGT 60.616 52.381 0.00 0.00 0.00 4.40
2194 2626 1.155155 ACTGCGGGATTTGGGGTTT 59.845 52.632 0.00 0.00 0.00 3.27
2197 2629 0.897863 TTTCACTGCGGGATTTGGGG 60.898 55.000 0.00 0.00 0.00 4.96
2204 2636 2.070783 GTAACGAATTTCACTGCGGGA 58.929 47.619 0.00 0.00 0.00 5.14
2207 2639 1.801771 TGGGTAACGAATTTCACTGCG 59.198 47.619 0.00 0.00 37.60 5.18
2223 2655 3.806949 ACAATGTTACTCCACATGGGT 57.193 42.857 0.00 0.00 37.46 4.51
2231 2663 7.174946 TCAAATTGAGGAGAACAATGTTACTCC 59.825 37.037 24.28 24.28 46.28 3.85
2232 2664 8.099364 TCAAATTGAGGAGAACAATGTTACTC 57.901 34.615 14.19 14.19 37.89 2.59
2233 2665 8.641498 ATCAAATTGAGGAGAACAATGTTACT 57.359 30.769 0.00 0.00 37.89 2.24
2234 2666 8.734386 AGATCAAATTGAGGAGAACAATGTTAC 58.266 33.333 0.00 0.00 37.89 2.50
2235 2667 8.733458 CAGATCAAATTGAGGAGAACAATGTTA 58.267 33.333 0.00 0.00 37.89 2.41
2236 2668 7.232127 ACAGATCAAATTGAGGAGAACAATGTT 59.768 33.333 0.00 0.00 37.89 2.71
2328 2764 0.528684 GCCATCGTCTTCTTCCTCCG 60.529 60.000 0.00 0.00 0.00 4.63
2616 3062 1.645034 CGTGTCCTCTTCAATCGCAT 58.355 50.000 0.00 0.00 0.00 4.73
2733 3180 1.261619 GAGTTCCAACACTGACGCTTG 59.738 52.381 0.00 0.00 0.00 4.01
2852 3301 3.626028 AGATTGACCGAAACAAACTGC 57.374 42.857 0.00 0.00 31.23 4.40
2863 3312 2.233922 ACAGGGTGAAGTAGATTGACCG 59.766 50.000 0.00 0.00 45.44 4.79
2897 3346 4.750098 ACACATATACAAGCACTAATCCGC 59.250 41.667 0.00 0.00 0.00 5.54
2899 3348 6.055588 ACCACACATATACAAGCACTAATCC 58.944 40.000 0.00 0.00 0.00 3.01
2900 3349 7.516785 CGAACCACACATATACAAGCACTAATC 60.517 40.741 0.00 0.00 0.00 1.75
2901 3350 6.257849 CGAACCACACATATACAAGCACTAAT 59.742 38.462 0.00 0.00 0.00 1.73
2902 3351 5.579119 CGAACCACACATATACAAGCACTAA 59.421 40.000 0.00 0.00 0.00 2.24
2903 3352 5.106442 CGAACCACACATATACAAGCACTA 58.894 41.667 0.00 0.00 0.00 2.74
2904 3353 3.932710 CGAACCACACATATACAAGCACT 59.067 43.478 0.00 0.00 0.00 4.40
2905 3354 3.682858 ACGAACCACACATATACAAGCAC 59.317 43.478 0.00 0.00 0.00 4.40
2906 3355 3.932822 ACGAACCACACATATACAAGCA 58.067 40.909 0.00 0.00 0.00 3.91
2907 3356 4.939509 AACGAACCACACATATACAAGC 57.060 40.909 0.00 0.00 0.00 4.01
2908 3357 6.074516 CCGATAACGAACCACACATATACAAG 60.075 42.308 0.00 0.00 42.66 3.16
2909 3358 5.749588 CCGATAACGAACCACACATATACAA 59.250 40.000 0.00 0.00 42.66 2.41
2910 3359 5.067544 TCCGATAACGAACCACACATATACA 59.932 40.000 0.00 0.00 42.66 2.29
2911 3360 5.522456 TCCGATAACGAACCACACATATAC 58.478 41.667 0.00 0.00 42.66 1.47
2912 3361 5.771153 TCCGATAACGAACCACACATATA 57.229 39.130 0.00 0.00 42.66 0.86
2913 3362 4.659111 TCCGATAACGAACCACACATAT 57.341 40.909 0.00 0.00 42.66 1.78
2914 3363 4.453177 TTCCGATAACGAACCACACATA 57.547 40.909 0.00 0.00 42.66 2.29
2915 3364 3.322211 TTCCGATAACGAACCACACAT 57.678 42.857 0.00 0.00 42.66 3.21
2926 3393 6.035843 TGTTACTCCACGTATTTCCGATAAC 58.964 40.000 0.00 0.00 0.00 1.89
2932 3399 4.624452 GTGTCTGTTACTCCACGTATTTCC 59.376 45.833 0.00 0.00 0.00 3.13
2939 3406 1.887198 AGAGGTGTCTGTTACTCCACG 59.113 52.381 0.00 0.00 43.07 4.94
3041 3574 2.760650 ACTGCAAGATGGTCGACAGATA 59.239 45.455 18.91 0.44 37.43 1.98
3131 3665 1.965219 CGTCTCCTTCGGAACCAGT 59.035 57.895 0.00 0.00 0.00 4.00
3132 3666 1.446272 GCGTCTCCTTCGGAACCAG 60.446 63.158 0.00 0.00 0.00 4.00
3133 3667 2.654877 GCGTCTCCTTCGGAACCA 59.345 61.111 0.00 0.00 0.00 3.67
3134 3668 2.506438 CGCGTCTCCTTCGGAACC 60.506 66.667 0.00 0.00 0.00 3.62
3135 3669 2.087009 CACGCGTCTCCTTCGGAAC 61.087 63.158 9.86 0.00 0.00 3.62
3136 3670 2.257371 CACGCGTCTCCTTCGGAA 59.743 61.111 9.86 0.00 0.00 4.30
3137 3671 2.981909 ACACGCGTCTCCTTCGGA 60.982 61.111 9.86 0.00 0.00 4.55
3138 3672 2.543687 ATCACACGCGTCTCCTTCGG 62.544 60.000 9.86 0.00 0.00 4.30
3139 3673 0.098200 TATCACACGCGTCTCCTTCG 59.902 55.000 9.86 0.00 0.00 3.79
3140 3674 2.186076 CTTATCACACGCGTCTCCTTC 58.814 52.381 9.86 0.00 0.00 3.46
3141 3675 1.736032 GCTTATCACACGCGTCTCCTT 60.736 52.381 9.86 0.00 0.00 3.36
3142 3676 0.179134 GCTTATCACACGCGTCTCCT 60.179 55.000 9.86 0.00 0.00 3.69
3143 3677 0.457853 TGCTTATCACACGCGTCTCC 60.458 55.000 9.86 0.00 0.00 3.71
3144 3678 0.917259 CTGCTTATCACACGCGTCTC 59.083 55.000 9.86 0.00 0.00 3.36
3145 3679 1.078759 GCTGCTTATCACACGCGTCT 61.079 55.000 9.86 0.00 0.00 4.18
3146 3680 1.345176 GCTGCTTATCACACGCGTC 59.655 57.895 9.86 0.00 0.00 5.19
3147 3681 2.100631 GGCTGCTTATCACACGCGT 61.101 57.895 5.58 5.58 0.00 6.01
3148 3682 1.811266 AGGCTGCTTATCACACGCG 60.811 57.895 3.53 3.53 0.00 6.01
3149 3683 1.709147 CCAGGCTGCTTATCACACGC 61.709 60.000 9.56 0.00 0.00 5.34
3150 3684 0.391661 ACCAGGCTGCTTATCACACG 60.392 55.000 9.56 0.00 0.00 4.49
3151 3685 1.740025 GAACCAGGCTGCTTATCACAC 59.260 52.381 9.56 0.00 0.00 3.82
3152 3686 1.350684 TGAACCAGGCTGCTTATCACA 59.649 47.619 9.56 0.00 0.00 3.58
3153 3687 2.113860 TGAACCAGGCTGCTTATCAC 57.886 50.000 9.56 0.00 0.00 3.06
3154 3688 3.018856 CAATGAACCAGGCTGCTTATCA 58.981 45.455 9.56 10.25 0.00 2.15
3155 3689 3.282021 TCAATGAACCAGGCTGCTTATC 58.718 45.455 9.56 4.65 0.00 1.75
3156 3690 3.370840 TCAATGAACCAGGCTGCTTAT 57.629 42.857 9.56 0.00 0.00 1.73
3157 3691 2.877097 TCAATGAACCAGGCTGCTTA 57.123 45.000 9.56 0.00 0.00 3.09
3158 3692 1.999648 TTCAATGAACCAGGCTGCTT 58.000 45.000 9.56 0.74 0.00 3.91
3159 3693 2.097825 GATTCAATGAACCAGGCTGCT 58.902 47.619 9.56 0.00 0.00 4.24
3160 3694 2.097825 AGATTCAATGAACCAGGCTGC 58.902 47.619 9.56 0.00 0.00 5.25
3161 3695 2.159282 GCAGATTCAATGAACCAGGCTG 60.159 50.000 7.75 7.75 0.00 4.85
3162 3696 2.097825 GCAGATTCAATGAACCAGGCT 58.902 47.619 0.00 0.00 0.00 4.58
3163 3697 1.820519 TGCAGATTCAATGAACCAGGC 59.179 47.619 0.00 0.00 0.00 4.85
3164 3698 2.165030 GGTGCAGATTCAATGAACCAGG 59.835 50.000 0.00 0.00 44.74 4.45
3165 3699 3.498927 GGTGCAGATTCAATGAACCAG 57.501 47.619 0.00 0.00 44.74 4.00
3167 3701 3.128242 CAGAGGTGCAGATTCAATGAACC 59.872 47.826 0.00 0.00 45.61 3.62
3168 3702 4.352600 CAGAGGTGCAGATTCAATGAAC 57.647 45.455 0.00 0.00 0.00 3.18
3182 3716 0.250640 AGTTTGAGGCTGCAGAGGTG 60.251 55.000 20.43 0.00 0.00 4.00
3183 3717 0.250640 CAGTTTGAGGCTGCAGAGGT 60.251 55.000 20.43 0.00 0.00 3.85
3184 3718 0.959372 CCAGTTTGAGGCTGCAGAGG 60.959 60.000 20.43 0.20 32.93 3.69
3185 3719 0.250640 ACCAGTTTGAGGCTGCAGAG 60.251 55.000 20.43 0.00 32.93 3.35
3186 3720 0.183492 AACCAGTTTGAGGCTGCAGA 59.817 50.000 20.43 0.00 32.93 4.26
3187 3721 0.595095 GAACCAGTTTGAGGCTGCAG 59.405 55.000 10.11 10.11 32.93 4.41
3188 3722 0.823356 GGAACCAGTTTGAGGCTGCA 60.823 55.000 0.50 0.00 32.93 4.41
3189 3723 1.856265 CGGAACCAGTTTGAGGCTGC 61.856 60.000 0.00 0.00 32.93 5.25
3190 3724 0.250295 TCGGAACCAGTTTGAGGCTG 60.250 55.000 0.00 0.00 0.00 4.85
3191 3725 0.472471 TTCGGAACCAGTTTGAGGCT 59.528 50.000 0.00 0.00 0.00 4.58
3192 3726 0.875059 CTTCGGAACCAGTTTGAGGC 59.125 55.000 0.00 0.00 0.00 4.70
3193 3727 1.071699 TCCTTCGGAACCAGTTTGAGG 59.928 52.381 0.00 0.00 0.00 3.86
3194 3728 2.037251 TCTCCTTCGGAACCAGTTTGAG 59.963 50.000 0.00 0.00 0.00 3.02
3195 3729 2.043992 TCTCCTTCGGAACCAGTTTGA 58.956 47.619 0.00 0.00 0.00 2.69
3196 3730 2.143925 GTCTCCTTCGGAACCAGTTTG 58.856 52.381 0.00 0.00 0.00 2.93
3197 3731 1.270147 CGTCTCCTTCGGAACCAGTTT 60.270 52.381 0.00 0.00 0.00 2.66
3198 3732 0.317479 CGTCTCCTTCGGAACCAGTT 59.683 55.000 0.00 0.00 0.00 3.16
3199 3733 1.965219 CGTCTCCTTCGGAACCAGT 59.035 57.895 0.00 0.00 0.00 4.00
3200 3734 1.446272 GCGTCTCCTTCGGAACCAG 60.446 63.158 0.00 0.00 0.00 4.00
3201 3735 2.654877 GCGTCTCCTTCGGAACCA 59.345 61.111 0.00 0.00 0.00 3.67
3202 3736 2.506438 CGCGTCTCCTTCGGAACC 60.506 66.667 0.00 0.00 0.00 3.62
3203 3737 0.942884 AAACGCGTCTCCTTCGGAAC 60.943 55.000 14.44 0.00 0.00 3.62
3204 3738 0.665369 GAAACGCGTCTCCTTCGGAA 60.665 55.000 14.44 0.00 0.00 4.30
3205 3739 1.080974 GAAACGCGTCTCCTTCGGA 60.081 57.895 14.44 0.00 0.00 4.55
3206 3740 0.736325 ATGAAACGCGTCTCCTTCGG 60.736 55.000 14.44 0.00 0.00 4.30
3207 3741 1.068474 AATGAAACGCGTCTCCTTCG 58.932 50.000 14.44 0.00 0.00 3.79
3208 3742 2.066262 TCAATGAAACGCGTCTCCTTC 58.934 47.619 14.44 13.64 0.00 3.46
3209 3743 2.163818 TCAATGAAACGCGTCTCCTT 57.836 45.000 14.44 4.35 0.00 3.36
3210 3744 2.163818 TTCAATGAAACGCGTCTCCT 57.836 45.000 14.44 0.00 0.00 3.69
3211 3745 2.673368 AGATTCAATGAAACGCGTCTCC 59.327 45.455 14.44 5.27 0.00 3.71
3212 3746 3.663908 CAGATTCAATGAAACGCGTCTC 58.336 45.455 14.44 9.62 0.00 3.36
3213 3747 2.159653 GCAGATTCAATGAAACGCGTCT 60.160 45.455 14.44 0.00 0.00 4.18
3214 3748 2.169179 GCAGATTCAATGAAACGCGTC 58.831 47.619 14.44 0.25 0.00 5.19
3215 3749 1.464023 CGCAGATTCAATGAAACGCGT 60.464 47.619 22.62 5.58 35.14 6.01
3216 3750 1.174352 CGCAGATTCAATGAAACGCG 58.826 50.000 19.87 19.87 34.16 6.01
3217 3751 0.909843 GCGCAGATTCAATGAAACGC 59.090 50.000 15.95 15.95 38.17 4.84
3218 3752 1.131126 AGGCGCAGATTCAATGAAACG 59.869 47.619 10.83 3.46 0.00 3.60
3219 3753 2.421424 AGAGGCGCAGATTCAATGAAAC 59.579 45.455 10.83 0.00 0.00 2.78
3220 3754 2.421073 CAGAGGCGCAGATTCAATGAAA 59.579 45.455 10.83 0.00 0.00 2.69
3221 3755 2.011947 CAGAGGCGCAGATTCAATGAA 58.988 47.619 10.83 0.00 0.00 2.57
3222 3756 1.660167 CAGAGGCGCAGATTCAATGA 58.340 50.000 10.83 0.00 0.00 2.57
3223 3757 0.029035 GCAGAGGCGCAGATTCAATG 59.971 55.000 10.83 0.00 0.00 2.82
3224 3758 0.393402 TGCAGAGGCGCAGATTCAAT 60.393 50.000 10.83 0.00 45.35 2.57
3225 3759 1.003476 TGCAGAGGCGCAGATTCAA 60.003 52.632 10.83 0.00 45.35 2.69
3226 3760 2.664398 TGCAGAGGCGCAGATTCA 59.336 55.556 10.83 0.00 45.35 2.57
3235 3769 1.303155 AGTTTGAGGCTGCAGAGGC 60.303 57.895 20.43 4.28 45.31 4.70
3236 3770 0.959372 CCAGTTTGAGGCTGCAGAGG 60.959 60.000 20.43 0.20 32.93 3.69
3237 3771 0.250640 ACCAGTTTGAGGCTGCAGAG 60.251 55.000 20.43 0.00 32.93 3.35
3238 3772 0.183492 AACCAGTTTGAGGCTGCAGA 59.817 50.000 20.43 0.00 32.93 4.26
3239 3773 0.595095 GAACCAGTTTGAGGCTGCAG 59.405 55.000 10.11 10.11 32.93 4.41
3240 3774 0.823356 GGAACCAGTTTGAGGCTGCA 60.823 55.000 0.50 0.00 32.93 4.41
3241 3775 1.856265 CGGAACCAGTTTGAGGCTGC 61.856 60.000 0.00 0.00 32.93 5.25
3242 3776 0.250295 TCGGAACCAGTTTGAGGCTG 60.250 55.000 0.00 0.00 0.00 4.85
3243 3777 0.472471 TTCGGAACCAGTTTGAGGCT 59.528 50.000 0.00 0.00 0.00 4.58
3244 3778 0.875059 CTTCGGAACCAGTTTGAGGC 59.125 55.000 0.00 0.00 0.00 4.70
3245 3779 1.071699 TCCTTCGGAACCAGTTTGAGG 59.928 52.381 0.00 0.00 0.00 3.86
3246 3780 2.037251 TCTCCTTCGGAACCAGTTTGAG 59.963 50.000 0.00 0.00 0.00 3.02
3247 3781 2.043992 TCTCCTTCGGAACCAGTTTGA 58.956 47.619 0.00 0.00 0.00 2.69
3248 3782 2.143925 GTCTCCTTCGGAACCAGTTTG 58.856 52.381 0.00 0.00 0.00 2.93
3249 3783 1.270147 CGTCTCCTTCGGAACCAGTTT 60.270 52.381 0.00 0.00 0.00 2.66
3250 3784 0.317479 CGTCTCCTTCGGAACCAGTT 59.683 55.000 0.00 0.00 0.00 3.16
3371 3973 3.648982 TGTGCAAGAACCGCGCAG 61.649 61.111 8.75 0.00 44.47 5.18
3400 4002 3.391049 GTTGTTTACAGGAACTCGAGCT 58.609 45.455 13.61 0.00 34.60 4.09
3466 4068 3.681594 CGAGTAATATGCCAGTGGGTTGT 60.682 47.826 12.15 0.00 36.17 3.32
3482 4084 4.270834 AGTGGAGTTGCTAGATCGAGTAA 58.729 43.478 2.33 2.33 0.00 2.24
3483 4085 3.878103 GAGTGGAGTTGCTAGATCGAGTA 59.122 47.826 4.67 0.00 0.00 2.59
3485 4087 2.685388 TGAGTGGAGTTGCTAGATCGAG 59.315 50.000 0.00 0.00 0.00 4.04
3486 4088 2.423892 GTGAGTGGAGTTGCTAGATCGA 59.576 50.000 0.00 0.00 0.00 3.59
3488 4090 2.423892 TCGTGAGTGGAGTTGCTAGATC 59.576 50.000 0.00 0.00 0.00 2.75
3489 4091 2.447443 TCGTGAGTGGAGTTGCTAGAT 58.553 47.619 0.00 0.00 0.00 1.98
3490 4092 1.905637 TCGTGAGTGGAGTTGCTAGA 58.094 50.000 0.00 0.00 0.00 2.43
3491 4093 2.724977 TTCGTGAGTGGAGTTGCTAG 57.275 50.000 0.00 0.00 0.00 3.42
3493 4095 2.550830 AATTCGTGAGTGGAGTTGCT 57.449 45.000 0.00 0.00 0.00 3.91
3494 4096 3.125316 CCTAAATTCGTGAGTGGAGTTGC 59.875 47.826 0.00 0.00 0.00 4.17
3495 4097 4.315803 ACCTAAATTCGTGAGTGGAGTTG 58.684 43.478 0.00 0.00 0.00 3.16
3496 4098 4.618920 ACCTAAATTCGTGAGTGGAGTT 57.381 40.909 0.00 0.00 0.00 3.01
3497 4099 4.381718 GCTACCTAAATTCGTGAGTGGAGT 60.382 45.833 0.00 0.00 0.00 3.85
3498 4100 4.113354 GCTACCTAAATTCGTGAGTGGAG 58.887 47.826 0.00 0.00 0.00 3.86
3500 4102 3.857052 TGCTACCTAAATTCGTGAGTGG 58.143 45.455 0.00 0.00 0.00 4.00
3501 4103 6.422776 AATTGCTACCTAAATTCGTGAGTG 57.577 37.500 0.00 0.00 0.00 3.51
3503 4105 6.202954 CCCTAATTGCTACCTAAATTCGTGAG 59.797 42.308 0.00 0.00 0.00 3.51
3504 4106 6.053005 CCCTAATTGCTACCTAAATTCGTGA 58.947 40.000 0.00 0.00 0.00 4.35
3505 4107 5.820947 ACCCTAATTGCTACCTAAATTCGTG 59.179 40.000 0.00 0.00 0.00 4.35
3506 4108 5.997843 ACCCTAATTGCTACCTAAATTCGT 58.002 37.500 0.00 0.00 0.00 3.85
3507 4109 6.937436 AACCCTAATTGCTACCTAAATTCG 57.063 37.500 0.00 0.00 0.00 3.34
3508 4110 8.741603 TGTAACCCTAATTGCTACCTAAATTC 57.258 34.615 0.00 0.00 0.00 2.17
3509 4111 8.963725 GTTGTAACCCTAATTGCTACCTAAATT 58.036 33.333 0.00 0.00 0.00 1.82
3510 4112 8.333984 AGTTGTAACCCTAATTGCTACCTAAAT 58.666 33.333 0.00 0.00 0.00 1.40
3511 4113 7.692172 AGTTGTAACCCTAATTGCTACCTAAA 58.308 34.615 0.00 0.00 0.00 1.85
3512 4114 7.181485 AGAGTTGTAACCCTAATTGCTACCTAA 59.819 37.037 0.00 0.00 0.00 2.69
3513 4115 6.670902 AGAGTTGTAACCCTAATTGCTACCTA 59.329 38.462 0.00 0.00 0.00 3.08
3514 4116 5.487845 AGAGTTGTAACCCTAATTGCTACCT 59.512 40.000 0.00 0.00 0.00 3.08
3515 4117 5.585047 CAGAGTTGTAACCCTAATTGCTACC 59.415 44.000 0.00 0.00 0.00 3.18
3516 4118 5.585047 CCAGAGTTGTAACCCTAATTGCTAC 59.415 44.000 0.00 0.00 0.00 3.58
3517 4119 5.486063 TCCAGAGTTGTAACCCTAATTGCTA 59.514 40.000 0.00 0.00 0.00 3.49
3518 4120 4.288626 TCCAGAGTTGTAACCCTAATTGCT 59.711 41.667 0.00 0.00 0.00 3.91
3519 4121 4.585879 TCCAGAGTTGTAACCCTAATTGC 58.414 43.478 0.00 0.00 0.00 3.56
3520 4122 7.280205 GTGTATCCAGAGTTGTAACCCTAATTG 59.720 40.741 0.00 0.00 0.00 2.32
3522 4124 6.406624 CGTGTATCCAGAGTTGTAACCCTAAT 60.407 42.308 0.00 0.00 0.00 1.73
3523 4125 5.105635 CGTGTATCCAGAGTTGTAACCCTAA 60.106 44.000 0.00 0.00 0.00 2.69
3524 4126 4.400251 CGTGTATCCAGAGTTGTAACCCTA 59.600 45.833 0.00 0.00 0.00 3.53
3527 4129 4.445452 TCGTGTATCCAGAGTTGTAACC 57.555 45.455 0.00 0.00 0.00 2.85
3528 4130 6.183360 CCAATTCGTGTATCCAGAGTTGTAAC 60.183 42.308 0.00 0.00 32.17 2.50
3529 4131 5.872617 CCAATTCGTGTATCCAGAGTTGTAA 59.127 40.000 0.00 0.00 32.17 2.41
3530 4132 5.416083 CCAATTCGTGTATCCAGAGTTGTA 58.584 41.667 0.00 0.00 32.17 2.41
3531 4133 4.253685 CCAATTCGTGTATCCAGAGTTGT 58.746 43.478 0.00 0.00 32.17 3.32
3532 4134 3.063997 GCCAATTCGTGTATCCAGAGTTG 59.936 47.826 0.00 0.00 33.32 3.16
3535 4137 1.860950 CGCCAATTCGTGTATCCAGAG 59.139 52.381 0.00 0.00 0.00 3.35
3537 4139 1.934589 TCGCCAATTCGTGTATCCAG 58.065 50.000 0.00 0.00 0.00 3.86
3538 4140 2.004017 GTTCGCCAATTCGTGTATCCA 58.996 47.619 0.00 0.00 0.00 3.41
3539 4141 2.004017 TGTTCGCCAATTCGTGTATCC 58.996 47.619 0.00 0.00 0.00 2.59
3540 4142 3.733024 TTGTTCGCCAATTCGTGTATC 57.267 42.857 0.00 0.00 0.00 2.24
3542 4144 2.224549 CCTTTGTTCGCCAATTCGTGTA 59.775 45.455 0.00 0.00 31.81 2.90
3546 5678 0.109319 CCCCTTTGTTCGCCAATTCG 60.109 55.000 0.00 0.00 31.81 3.34
3554 5686 1.946283 GCTCTCTTCCCCCTTTGTTCG 60.946 57.143 0.00 0.00 0.00 3.95
3562 5701 4.168291 CTGCGGCTCTCTTCCCCC 62.168 72.222 0.00 0.00 0.00 5.40
3578 5717 3.254024 ATCAACGGCGAACCTGGCT 62.254 57.895 16.62 0.00 0.00 4.75
3582 5721 1.375523 GTGGATCAACGGCGAACCT 60.376 57.895 16.62 0.00 0.00 3.50
3587 5726 0.104120 TATCCAGTGGATCAACGGCG 59.896 55.000 28.15 4.80 42.11 6.46
3589 5728 1.202651 GGGTATCCAGTGGATCAACGG 60.203 57.143 28.15 5.12 42.11 4.44
3590 5729 1.538204 CGGGTATCCAGTGGATCAACG 60.538 57.143 28.15 23.61 42.11 4.10
3652 5791 9.983024 TGGTTTATCAATAAAATCCCTAGTTCA 57.017 29.630 0.00 0.00 34.36 3.18
3656 5795 9.750125 GCTTTGGTTTATCAATAAAATCCCTAG 57.250 33.333 0.00 0.00 34.36 3.02
3657 5796 8.700973 GGCTTTGGTTTATCAATAAAATCCCTA 58.299 33.333 0.00 0.00 34.36 3.53
3658 5797 7.564793 GGCTTTGGTTTATCAATAAAATCCCT 58.435 34.615 0.00 0.00 34.36 4.20
3659 5798 6.478673 CGGCTTTGGTTTATCAATAAAATCCC 59.521 38.462 0.00 0.00 34.36 3.85
3660 5799 7.262048 TCGGCTTTGGTTTATCAATAAAATCC 58.738 34.615 0.00 0.00 34.36 3.01
3661 5800 8.696410 TTCGGCTTTGGTTTATCAATAAAATC 57.304 30.769 0.00 0.00 34.36 2.17
3662 5801 7.763985 CCTTCGGCTTTGGTTTATCAATAAAAT 59.236 33.333 0.00 0.00 34.36 1.82
3663 5802 7.039644 TCCTTCGGCTTTGGTTTATCAATAAAA 60.040 33.333 0.00 0.00 34.36 1.52
3664 5803 6.434652 TCCTTCGGCTTTGGTTTATCAATAAA 59.565 34.615 0.00 0.00 0.00 1.40
3665 5804 5.946972 TCCTTCGGCTTTGGTTTATCAATAA 59.053 36.000 0.00 0.00 0.00 1.40
3666 5805 5.502079 TCCTTCGGCTTTGGTTTATCAATA 58.498 37.500 0.00 0.00 0.00 1.90
3667 5806 4.340617 TCCTTCGGCTTTGGTTTATCAAT 58.659 39.130 0.00 0.00 0.00 2.57
3668 5807 3.757270 TCCTTCGGCTTTGGTTTATCAA 58.243 40.909 0.00 0.00 0.00 2.57
3669 5808 3.426787 TCCTTCGGCTTTGGTTTATCA 57.573 42.857 0.00 0.00 0.00 2.15
3670 5809 4.983671 ATTCCTTCGGCTTTGGTTTATC 57.016 40.909 0.00 0.00 0.00 1.75
3671 5810 5.258051 TGTATTCCTTCGGCTTTGGTTTAT 58.742 37.500 0.00 0.00 0.00 1.40
3672 5811 4.653868 TGTATTCCTTCGGCTTTGGTTTA 58.346 39.130 0.00 0.00 0.00 2.01
3673 5812 3.492337 TGTATTCCTTCGGCTTTGGTTT 58.508 40.909 0.00 0.00 0.00 3.27
3674 5813 3.149005 TGTATTCCTTCGGCTTTGGTT 57.851 42.857 0.00 0.00 0.00 3.67
3675 5814 2.871096 TGTATTCCTTCGGCTTTGGT 57.129 45.000 0.00 0.00 0.00 3.67
3676 5815 4.718940 ATTTGTATTCCTTCGGCTTTGG 57.281 40.909 0.00 0.00 0.00 3.28
3677 5816 7.257722 ACATTATTTGTATTCCTTCGGCTTTG 58.742 34.615 0.00 0.00 36.57 2.77
3678 5817 7.404671 ACATTATTTGTATTCCTTCGGCTTT 57.595 32.000 0.00 0.00 36.57 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.