Multiple sequence alignment - TraesCS2D01G210100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G210100 chr2D 100.000 6153 0 0 1 6153 166104507 166110659 0.000000e+00 11363.0
1 TraesCS2D01G210100 chr2D 100.000 56 0 0 5024 5079 166109478 166109533 3.030000e-18 104.0
2 TraesCS2D01G210100 chr2D 100.000 56 0 0 4972 5027 166109530 166109585 3.030000e-18 104.0
3 TraesCS2D01G210100 chr2B 97.313 1861 45 3 3170 5027 231666216 231664358 0.000000e+00 3155.0
4 TraesCS2D01G210100 chr2B 94.691 1149 50 6 699 1841 231668918 231667775 0.000000e+00 1773.0
5 TraesCS2D01G210100 chr2B 97.962 736 15 0 2371 3106 231666950 231666215 0.000000e+00 1277.0
6 TraesCS2D01G210100 chr2B 96.264 455 17 0 5034 5488 231664403 231663949 0.000000e+00 747.0
7 TraesCS2D01G210100 chr2B 90.566 477 24 7 5498 5954 231661652 231661177 4.080000e-171 612.0
8 TraesCS2D01G210100 chr2B 97.110 346 8 2 2028 2373 231667416 231667073 3.200000e-162 582.0
9 TraesCS2D01G210100 chr2B 97.938 194 3 1 1837 2029 231667733 231667540 9.880000e-88 335.0
10 TraesCS2D01G210100 chr2B 87.209 172 14 3 5966 6135 231660950 231660785 8.140000e-44 189.0
11 TraesCS2D01G210100 chr2A 96.948 1540 34 7 3492 5026 184559768 184558237 0.000000e+00 2571.0
12 TraesCS2D01G210100 chr2A 96.602 1177 35 3 2351 3527 184560938 184559767 0.000000e+00 1947.0
13 TraesCS2D01G210100 chr2A 96.956 1117 23 4 731 1841 184562842 184561731 0.000000e+00 1864.0
14 TraesCS2D01G210100 chr2A 86.222 704 87 9 10 709 94004238 94003541 0.000000e+00 754.0
15 TraesCS2D01G210100 chr2A 98.214 392 5 2 5024 5415 184558291 184557902 0.000000e+00 684.0
16 TraesCS2D01G210100 chr2A 89.267 382 33 8 1837 2213 184561692 184561314 7.220000e-129 472.0
17 TraesCS2D01G210100 chr2A 89.362 94 5 1 2263 2351 184561086 184560993 5.040000e-21 113.0
18 TraesCS2D01G210100 chr2A 89.535 86 6 3 5934 6019 184555141 184555059 8.440000e-19 106.0
19 TraesCS2D01G210100 chr2A 82.258 124 16 5 5693 5810 184555679 184555556 1.090000e-17 102.0
20 TraesCS2D01G210100 chr5D 92.102 709 49 7 7 711 319427226 319427931 0.000000e+00 992.0
21 TraesCS2D01G210100 chr7D 92.063 630 45 5 85 710 44657657 44657029 0.000000e+00 881.0
22 TraesCS2D01G210100 chr7D 86.931 681 68 13 37 707 591859105 591858436 0.000000e+00 745.0
23 TraesCS2D01G210100 chr3A 88.826 707 68 9 10 710 428800397 428799696 0.000000e+00 857.0
24 TraesCS2D01G210100 chr3A 88.060 670 70 9 44 707 102832654 102833319 0.000000e+00 785.0
25 TraesCS2D01G210100 chr7A 88.017 701 78 6 15 711 201967361 201966663 0.000000e+00 824.0
26 TraesCS2D01G210100 chr6A 87.358 704 81 8 7 707 113540323 113541021 0.000000e+00 800.0
27 TraesCS2D01G210100 chrUn 88.262 656 70 7 10 661 15332793 15333445 0.000000e+00 778.0
28 TraesCS2D01G210100 chr1D 100.000 28 0 0 6021 6048 494868393 494868366 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G210100 chr2D 166104507 166110659 6152 False 3857.000 11363 100.000000 1 6153 3 chr2D.!!$F1 6152
1 TraesCS2D01G210100 chr2B 231660785 231668918 8133 True 1083.750 3155 94.881625 699 6135 8 chr2B.!!$R1 5436
2 TraesCS2D01G210100 chr2A 184555059 184562842 7783 True 982.375 2571 92.392750 731 6019 8 chr2A.!!$R2 5288
3 TraesCS2D01G210100 chr2A 94003541 94004238 697 True 754.000 754 86.222000 10 709 1 chr2A.!!$R1 699
4 TraesCS2D01G210100 chr5D 319427226 319427931 705 False 992.000 992 92.102000 7 711 1 chr5D.!!$F1 704
5 TraesCS2D01G210100 chr7D 44657029 44657657 628 True 881.000 881 92.063000 85 710 1 chr7D.!!$R1 625
6 TraesCS2D01G210100 chr7D 591858436 591859105 669 True 745.000 745 86.931000 37 707 1 chr7D.!!$R2 670
7 TraesCS2D01G210100 chr3A 428799696 428800397 701 True 857.000 857 88.826000 10 710 1 chr3A.!!$R1 700
8 TraesCS2D01G210100 chr3A 102832654 102833319 665 False 785.000 785 88.060000 44 707 1 chr3A.!!$F1 663
9 TraesCS2D01G210100 chr7A 201966663 201967361 698 True 824.000 824 88.017000 15 711 1 chr7A.!!$R1 696
10 TraesCS2D01G210100 chr6A 113540323 113541021 698 False 800.000 800 87.358000 7 707 1 chr6A.!!$F1 700
11 TraesCS2D01G210100 chrUn 15332793 15333445 652 False 778.000 778 88.262000 10 661 1 chrUn.!!$F1 651


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
617 636 0.875728 CACGCCGACCCAAATACAAA 59.124 50.000 0.00 0.00 0.00 2.83 F
1408 1437 0.390472 GTGCAGAGTGACTAGTGCCC 60.390 60.000 14.71 2.21 34.91 5.36 F
2113 2319 0.407139 GGATGCCCTCCCATAATGCT 59.593 55.000 0.00 0.00 38.19 3.79 F
3807 4476 1.112113 GGAGTTGCAGGGATCGACTA 58.888 55.000 0.00 0.00 0.00 2.59 F
4980 5654 1.005097 TCCTACGGTGTTCCAGCTCTA 59.995 52.381 0.00 0.00 0.00 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 2287 0.036388 GGCATCCCACAAGACTTCGA 60.036 55.000 0.0 0.0 0.0 3.71 R
3169 3804 0.636647 TCCCCTCTATGTCTCAGGCA 59.363 55.000 0.0 0.0 0.0 4.75 R
3907 4578 1.327303 GAGACATGGCGAGGAGAGAT 58.673 55.000 0.0 0.0 0.0 2.75 R
5070 5744 1.202371 GCGACGAACACATGGAGGATA 60.202 52.381 0.0 0.0 0.0 2.59 R
6128 11575 0.107459 AGAGAGAAATTCCCGCTGCC 60.107 55.000 0.0 0.0 0.0 4.85 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 4.351054 CCGTCCCTGCCCAAAGCT 62.351 66.667 0.00 0.00 44.23 3.74
172 173 2.567049 GAGTAGTGCGCGAGTGGT 59.433 61.111 12.10 0.00 0.00 4.16
359 361 4.473520 CCCGACATCGCTGCCCTT 62.474 66.667 0.00 0.00 38.18 3.95
360 362 2.499205 CCGACATCGCTGCCCTTA 59.501 61.111 0.00 0.00 38.18 2.69
569 588 4.759516 ACTTTTATTTTGTCACGCCGAT 57.240 36.364 0.00 0.00 0.00 4.18
573 592 6.799925 ACTTTTATTTTGTCACGCCGATAAAG 59.200 34.615 0.00 0.00 36.27 1.85
617 636 0.875728 CACGCCGACCCAAATACAAA 59.124 50.000 0.00 0.00 0.00 2.83
635 654 2.116827 AAACCAGACGTTTGTGTCCA 57.883 45.000 5.27 0.00 43.21 4.02
675 695 2.266554 CAAAAACAGACAAAAGCGCCA 58.733 42.857 2.29 0.00 0.00 5.69
692 712 4.770874 ATCCGTTTGGGTCGGCCG 62.771 66.667 22.12 22.12 46.49 6.13
712 732 2.550208 CGGTTGGAGTTGCTCTTAAGGT 60.550 50.000 1.85 0.00 0.00 3.50
721 741 6.115448 AGTTGCTCTTAAGGTGTCTGTAAT 57.885 37.500 1.85 0.00 0.00 1.89
722 742 6.534634 AGTTGCTCTTAAGGTGTCTGTAATT 58.465 36.000 1.85 0.00 0.00 1.40
723 743 6.998673 AGTTGCTCTTAAGGTGTCTGTAATTT 59.001 34.615 1.85 0.00 0.00 1.82
724 744 7.502561 AGTTGCTCTTAAGGTGTCTGTAATTTT 59.497 33.333 1.85 0.00 0.00 1.82
725 745 7.817418 TGCTCTTAAGGTGTCTGTAATTTTT 57.183 32.000 1.85 0.00 0.00 1.94
861 881 4.216472 CGAGATCGAGGATGGAGAATGTAA 59.784 45.833 0.00 0.00 43.02 2.41
950 976 1.604593 GTGCAGCCCAACCACATCT 60.605 57.895 0.00 0.00 0.00 2.90
959 985 2.498481 CCCAACCACATCTTCCGTACTA 59.502 50.000 0.00 0.00 0.00 1.82
960 986 3.518590 CCAACCACATCTTCCGTACTAC 58.481 50.000 0.00 0.00 0.00 2.73
1233 1262 2.125832 TCGACGGTCGCCAAATCC 60.126 61.111 24.76 0.00 40.21 3.01
1299 1328 1.478510 CTCTACTTCCCATGTGAGCGT 59.521 52.381 0.00 0.00 0.00 5.07
1387 1416 1.503542 CGAAAGCTGCGGATTTGCT 59.496 52.632 14.59 0.00 38.87 3.91
1408 1437 0.390472 GTGCAGAGTGACTAGTGCCC 60.390 60.000 14.71 2.21 34.91 5.36
1578 1608 2.375173 ACCGTAGTGGAATTTCCGTC 57.625 50.000 10.79 6.64 40.17 4.79
1674 1704 9.984590 ATTTTGGTAGGGTAGTTATAACATGTT 57.015 29.630 16.68 16.68 0.00 2.71
1785 1815 4.823989 GGAAACAGTGGAATCATAGGATGG 59.176 45.833 0.00 0.00 32.92 3.51
2045 2251 9.955102 TTAGTATCTATCTATCTAAAGCGGTCA 57.045 33.333 0.00 0.00 0.00 4.02
2081 2287 2.577606 TCCCATGACGGTTTGTGAAT 57.422 45.000 0.00 0.00 0.00 2.57
2113 2319 0.407139 GGATGCCCTCCCATAATGCT 59.593 55.000 0.00 0.00 38.19 3.79
2201 2407 4.689612 AAGCAACACTGGAGTCTTCTAA 57.310 40.909 0.00 0.00 0.00 2.10
2238 2604 4.452733 CTCCGCAACTCCGACCCC 62.453 72.222 0.00 0.00 0.00 4.95
2299 2683 4.696402 TGTACGTTGTCTTTGGTGTTTCTT 59.304 37.500 0.00 0.00 0.00 2.52
2300 2684 4.091453 ACGTTGTCTTTGGTGTTTCTTG 57.909 40.909 0.00 0.00 0.00 3.02
2807 3377 4.884164 GGTCACATTGGATCCTTTCTTAGG 59.116 45.833 14.23 0.00 46.27 2.69
2910 3480 6.517362 CGAGCACCCAGAGAATAATGAGAATA 60.517 42.308 0.00 0.00 0.00 1.75
3106 3741 9.570468 CTACAGGTACTATAGTTATTGGAGTGA 57.430 37.037 11.40 0.00 36.02 3.41
3107 3742 8.834004 ACAGGTACTATAGTTATTGGAGTGAA 57.166 34.615 11.40 0.00 36.02 3.18
3108 3743 9.263446 ACAGGTACTATAGTTATTGGAGTGAAA 57.737 33.333 11.40 0.00 36.02 2.69
3114 3749 9.780186 ACTATAGTTATTGGAGTGAAATTAGGC 57.220 33.333 0.00 0.00 0.00 3.93
3117 3752 7.631717 AGTTATTGGAGTGAAATTAGGCTTC 57.368 36.000 0.00 0.00 0.00 3.86
3118 3753 7.406104 AGTTATTGGAGTGAAATTAGGCTTCT 58.594 34.615 0.00 0.00 0.00 2.85
3119 3754 7.890655 AGTTATTGGAGTGAAATTAGGCTTCTT 59.109 33.333 0.00 0.00 0.00 2.52
3120 3755 9.174166 GTTATTGGAGTGAAATTAGGCTTCTTA 57.826 33.333 0.00 0.00 0.00 2.10
3121 3756 7.872113 ATTGGAGTGAAATTAGGCTTCTTAG 57.128 36.000 0.00 0.00 0.00 2.18
3122 3757 6.620877 TGGAGTGAAATTAGGCTTCTTAGA 57.379 37.500 0.00 0.00 0.00 2.10
3123 3758 7.016153 TGGAGTGAAATTAGGCTTCTTAGAA 57.984 36.000 0.00 0.00 0.00 2.10
3124 3759 7.458397 TGGAGTGAAATTAGGCTTCTTAGAAA 58.542 34.615 0.00 0.00 0.00 2.52
3125 3760 8.109634 TGGAGTGAAATTAGGCTTCTTAGAAAT 58.890 33.333 0.00 0.00 0.00 2.17
3126 3761 8.616942 GGAGTGAAATTAGGCTTCTTAGAAATC 58.383 37.037 0.00 0.00 0.00 2.17
3127 3762 9.167311 GAGTGAAATTAGGCTTCTTAGAAATCA 57.833 33.333 0.00 0.00 0.00 2.57
3128 3763 9.520515 AGTGAAATTAGGCTTCTTAGAAATCAA 57.479 29.630 0.00 0.00 0.00 2.57
3148 3783 7.766219 ATCAAAATAAATGTGCTTCTGATGC 57.234 32.000 8.46 8.46 0.00 3.91
3149 3784 6.927416 TCAAAATAAATGTGCTTCTGATGCT 58.073 32.000 15.38 0.00 0.00 3.79
3150 3785 7.031372 TCAAAATAAATGTGCTTCTGATGCTC 58.969 34.615 15.38 12.48 0.00 4.26
3151 3786 5.511234 AATAAATGTGCTTCTGATGCTCC 57.489 39.130 15.38 7.66 0.00 4.70
3152 3787 2.502142 AATGTGCTTCTGATGCTCCA 57.498 45.000 15.38 12.17 0.00 3.86
3153 3788 2.502142 ATGTGCTTCTGATGCTCCAA 57.498 45.000 15.38 0.00 0.00 3.53
3154 3789 2.275134 TGTGCTTCTGATGCTCCAAA 57.725 45.000 15.38 0.00 0.00 3.28
3155 3790 2.799017 TGTGCTTCTGATGCTCCAAAT 58.201 42.857 15.38 0.00 0.00 2.32
3156 3791 2.490509 TGTGCTTCTGATGCTCCAAATG 59.509 45.455 15.38 0.00 0.00 2.32
3157 3792 2.751259 GTGCTTCTGATGCTCCAAATGA 59.249 45.455 15.38 0.00 0.00 2.57
3158 3793 3.192001 GTGCTTCTGATGCTCCAAATGAA 59.808 43.478 15.38 0.00 0.00 2.57
3159 3794 3.192001 TGCTTCTGATGCTCCAAATGAAC 59.808 43.478 15.38 0.00 0.00 3.18
3160 3795 3.442977 GCTTCTGATGCTCCAAATGAACT 59.557 43.478 8.16 0.00 0.00 3.01
3161 3796 4.438472 GCTTCTGATGCTCCAAATGAACTC 60.438 45.833 8.16 0.00 0.00 3.01
3162 3797 4.564782 TCTGATGCTCCAAATGAACTCT 57.435 40.909 0.00 0.00 0.00 3.24
3163 3798 4.914983 TCTGATGCTCCAAATGAACTCTT 58.085 39.130 0.00 0.00 0.00 2.85
3164 3799 4.940046 TCTGATGCTCCAAATGAACTCTTC 59.060 41.667 0.00 0.00 0.00 2.87
3165 3800 4.914983 TGATGCTCCAAATGAACTCTTCT 58.085 39.130 0.00 0.00 0.00 2.85
3166 3801 6.053632 TGATGCTCCAAATGAACTCTTCTA 57.946 37.500 0.00 0.00 0.00 2.10
3167 3802 6.475504 TGATGCTCCAAATGAACTCTTCTAA 58.524 36.000 0.00 0.00 0.00 2.10
3168 3803 6.372659 TGATGCTCCAAATGAACTCTTCTAAC 59.627 38.462 0.00 0.00 0.00 2.34
3169 3804 5.869579 TGCTCCAAATGAACTCTTCTAACT 58.130 37.500 0.00 0.00 0.00 2.24
3170 3805 5.702670 TGCTCCAAATGAACTCTTCTAACTG 59.297 40.000 0.00 0.00 0.00 3.16
3675 4344 7.021196 CACGATTTTTATCAACGGAGACAATT 58.979 34.615 0.00 0.00 0.00 2.32
3807 4476 1.112113 GGAGTTGCAGGGATCGACTA 58.888 55.000 0.00 0.00 0.00 2.59
3907 4578 5.575157 ACTGATCCTAGAGAAGACTTGACA 58.425 41.667 0.00 0.00 0.00 3.58
4168 4840 3.713826 TTTTGTACTTGAGGGCTAGGG 57.286 47.619 0.00 0.00 0.00 3.53
4515 5189 1.082117 GCAATGCTCATGCTGTTGGC 61.082 55.000 0.00 0.00 40.64 4.52
4778 5452 5.511386 AGAACTTTCTTCCATGGACAGAT 57.489 39.130 15.91 5.80 32.55 2.90
4780 5454 6.310149 AGAACTTTCTTCCATGGACAGATTT 58.690 36.000 15.91 12.82 32.55 2.17
4980 5654 1.005097 TCCTACGGTGTTCCAGCTCTA 59.995 52.381 0.00 0.00 0.00 2.43
5026 5700 4.968719 TCCAGTGCTAAAATCTATCCTCCA 59.031 41.667 0.00 0.00 0.00 3.86
5027 5701 5.070981 TCCAGTGCTAAAATCTATCCTCCAG 59.929 44.000 0.00 0.00 0.00 3.86
5028 5702 4.754114 CAGTGCTAAAATCTATCCTCCAGC 59.246 45.833 0.00 0.00 0.00 4.85
5029 5703 4.657969 AGTGCTAAAATCTATCCTCCAGCT 59.342 41.667 0.00 0.00 0.00 4.24
5030 5704 4.994217 GTGCTAAAATCTATCCTCCAGCTC 59.006 45.833 0.00 0.00 0.00 4.09
5031 5705 4.904251 TGCTAAAATCTATCCTCCAGCTCT 59.096 41.667 0.00 0.00 0.00 4.09
5032 5706 6.015010 GTGCTAAAATCTATCCTCCAGCTCTA 60.015 42.308 0.00 0.00 0.00 2.43
5033 5707 6.728164 TGCTAAAATCTATCCTCCAGCTCTAT 59.272 38.462 0.00 0.00 0.00 1.98
5034 5708 7.041107 GCTAAAATCTATCCTCCAGCTCTATG 58.959 42.308 0.00 0.00 0.00 2.23
5035 5709 7.310361 GCTAAAATCTATCCTCCAGCTCTATGT 60.310 40.741 0.00 0.00 0.00 2.29
5036 5710 7.385894 AAAATCTATCCTCCAGCTCTATGTT 57.614 36.000 0.00 0.00 0.00 2.71
5037 5711 7.385894 AAATCTATCCTCCAGCTCTATGTTT 57.614 36.000 0.00 0.00 0.00 2.83
5038 5712 7.385894 AATCTATCCTCCAGCTCTATGTTTT 57.614 36.000 0.00 0.00 0.00 2.43
5039 5713 6.412362 TCTATCCTCCAGCTCTATGTTTTC 57.588 41.667 0.00 0.00 0.00 2.29
5040 5714 6.139671 TCTATCCTCCAGCTCTATGTTTTCT 58.860 40.000 0.00 0.00 0.00 2.52
5041 5715 5.707066 ATCCTCCAGCTCTATGTTTTCTT 57.293 39.130 0.00 0.00 0.00 2.52
5042 5716 4.836825 TCCTCCAGCTCTATGTTTTCTTG 58.163 43.478 0.00 0.00 0.00 3.02
5043 5717 4.287067 TCCTCCAGCTCTATGTTTTCTTGT 59.713 41.667 0.00 0.00 0.00 3.16
5044 5718 4.394300 CCTCCAGCTCTATGTTTTCTTGTG 59.606 45.833 0.00 0.00 0.00 3.33
5045 5719 5.227569 TCCAGCTCTATGTTTTCTTGTGA 57.772 39.130 0.00 0.00 0.00 3.58
5046 5720 5.620206 TCCAGCTCTATGTTTTCTTGTGAA 58.380 37.500 0.00 0.00 0.00 3.18
5047 5721 6.061441 TCCAGCTCTATGTTTTCTTGTGAAA 58.939 36.000 0.00 0.00 40.08 2.69
5048 5722 6.716628 TCCAGCTCTATGTTTTCTTGTGAAAT 59.283 34.615 0.00 0.00 41.24 2.17
5049 5723 7.231317 TCCAGCTCTATGTTTTCTTGTGAAATT 59.769 33.333 0.00 0.00 41.24 1.82
5050 5724 7.540055 CCAGCTCTATGTTTTCTTGTGAAATTC 59.460 37.037 0.00 0.00 41.24 2.17
5051 5725 7.540055 CAGCTCTATGTTTTCTTGTGAAATTCC 59.460 37.037 0.00 0.00 41.24 3.01
5052 5726 7.449704 AGCTCTATGTTTTCTTGTGAAATTCCT 59.550 33.333 0.00 0.00 41.24 3.36
5053 5727 8.084684 GCTCTATGTTTTCTTGTGAAATTCCTT 58.915 33.333 0.00 0.00 41.24 3.36
5054 5728 9.971922 CTCTATGTTTTCTTGTGAAATTCCTTT 57.028 29.630 0.00 0.00 41.24 3.11
5057 5731 7.841915 TGTTTTCTTGTGAAATTCCTTTTCC 57.158 32.000 0.00 0.00 42.63 3.13
5058 5732 7.390027 TGTTTTCTTGTGAAATTCCTTTTCCA 58.610 30.769 0.00 0.00 42.63 3.53
5059 5733 7.548780 TGTTTTCTTGTGAAATTCCTTTTCCAG 59.451 33.333 0.00 0.00 42.63 3.86
5060 5734 6.790232 TTCTTGTGAAATTCCTTTTCCAGT 57.210 33.333 0.00 0.00 42.63 4.00
5061 5735 6.147864 TCTTGTGAAATTCCTTTTCCAGTG 57.852 37.500 0.00 0.00 42.63 3.66
5062 5736 4.320608 TGTGAAATTCCTTTTCCAGTGC 57.679 40.909 0.00 0.00 42.63 4.40
5063 5737 3.960102 TGTGAAATTCCTTTTCCAGTGCT 59.040 39.130 0.00 0.00 42.63 4.40
5064 5738 5.136828 TGTGAAATTCCTTTTCCAGTGCTA 58.863 37.500 0.00 0.00 42.63 3.49
5065 5739 5.596361 TGTGAAATTCCTTTTCCAGTGCTAA 59.404 36.000 0.00 0.00 42.63 3.09
5066 5740 6.097554 TGTGAAATTCCTTTTCCAGTGCTAAA 59.902 34.615 0.00 0.00 42.63 1.85
5067 5741 6.983890 GTGAAATTCCTTTTCCAGTGCTAAAA 59.016 34.615 0.00 2.74 42.63 1.52
5068 5742 7.657354 GTGAAATTCCTTTTCCAGTGCTAAAAT 59.343 33.333 3.06 0.00 42.63 1.82
5069 5743 7.872483 TGAAATTCCTTTTCCAGTGCTAAAATC 59.128 33.333 3.06 0.00 42.63 2.17
5070 5744 7.544804 AATTCCTTTTCCAGTGCTAAAATCT 57.455 32.000 3.06 0.00 0.00 2.40
5073 5747 7.865706 TCCTTTTCCAGTGCTAAAATCTATC 57.134 36.000 3.06 0.00 0.00 2.08
5116 5790 3.922375 AGAGAGGAGGGAAAGATACCTG 58.078 50.000 0.00 0.00 37.18 4.00
5454 6141 3.741476 GCTGCTCCCAAGTTGCGG 61.741 66.667 0.00 0.58 36.28 5.69
5469 6156 0.803117 TGCGGTGTTGTTTTGTCGAA 59.197 45.000 0.00 0.00 0.00 3.71
5479 6166 7.095982 GGTGTTGTTTTGTCGAAAAAGAGAAAA 60.096 33.333 0.20 0.00 39.84 2.29
5483 6170 8.623310 TGTTTTGTCGAAAAAGAGAAAATACC 57.377 30.769 0.20 0.00 42.55 2.73
5488 6175 8.391075 TGTCGAAAAAGAGAAAATACCTGAAT 57.609 30.769 0.00 0.00 0.00 2.57
5489 6176 8.289618 TGTCGAAAAAGAGAAAATACCTGAATG 58.710 33.333 0.00 0.00 0.00 2.67
5490 6177 7.271438 GTCGAAAAAGAGAAAATACCTGAATGC 59.729 37.037 0.00 0.00 0.00 3.56
5491 6178 7.040755 TCGAAAAAGAGAAAATACCTGAATGCA 60.041 33.333 0.00 0.00 0.00 3.96
5533 8508 5.105228 CGGGTCTTTTAGGATTGTACTACCA 60.105 44.000 0.00 0.00 0.00 3.25
5687 9920 3.067106 ACCTCGACACTGCAATAACTTG 58.933 45.455 0.00 0.00 35.36 3.16
5811 10825 4.697828 GGAGGAAGAGAAAGGTAAAGCTTG 59.302 45.833 0.00 0.00 0.00 4.01
5813 10827 3.191581 GGAAGAGAAAGGTAAAGCTTGCC 59.808 47.826 0.00 5.92 35.41 4.52
5819 10833 2.498644 AGGTAAAGCTTGCCTTCTCC 57.501 50.000 14.95 4.46 43.78 3.71
5820 10834 1.087501 GGTAAAGCTTGCCTTCTCCG 58.912 55.000 0.00 0.00 31.99 4.63
5891 10916 0.309922 ACGTACCTGTCGACACACAG 59.690 55.000 15.76 4.71 43.13 3.66
5909 10937 2.251600 GCAGTTGCTGGAACTCCTG 58.748 57.895 11.86 3.66 43.52 3.86
5914 10942 0.183492 TTGCTGGAACTCCTGTGCTT 59.817 50.000 4.75 0.00 37.30 3.91
6019 11466 1.141185 GAATTACCCTCCTCCCCCTG 58.859 60.000 0.00 0.00 0.00 4.45
6098 11545 2.358984 CACCCCCACCGGTAAACG 60.359 66.667 6.87 0.00 43.80 3.60
6142 11589 4.193334 GGCGGCAGCGGGAATTTC 62.193 66.667 3.07 0.00 46.35 2.17
6143 11590 3.134127 GCGGCAGCGGGAATTTCT 61.134 61.111 1.63 0.00 0.00 2.52
6144 11591 3.102097 CGGCAGCGGGAATTTCTC 58.898 61.111 0.00 0.00 0.00 2.87
6145 11592 1.450312 CGGCAGCGGGAATTTCTCT 60.450 57.895 0.00 0.00 0.00 3.10
6146 11593 1.432270 CGGCAGCGGGAATTTCTCTC 61.432 60.000 0.00 0.00 0.00 3.20
6147 11594 0.107459 GGCAGCGGGAATTTCTCTCT 60.107 55.000 0.00 0.00 0.00 3.10
6148 11595 1.294857 GCAGCGGGAATTTCTCTCTC 58.705 55.000 0.00 0.00 0.00 3.20
6149 11596 1.565305 CAGCGGGAATTTCTCTCTCG 58.435 55.000 0.00 0.00 0.00 4.04
6150 11597 0.179097 AGCGGGAATTTCTCTCTCGC 60.179 55.000 8.98 8.98 37.81 5.03
6151 11598 1.154814 GCGGGAATTTCTCTCTCGCC 61.155 60.000 5.80 0.00 34.41 5.54
6152 11599 0.461961 CGGGAATTTCTCTCTCGCCT 59.538 55.000 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.978571 GAAAGCCGCCTCCTCCACC 62.979 68.421 0.00 0.00 0.00 4.61
7 8 2.436824 GAAAGCCGCCTCCTCCAC 60.437 66.667 0.00 0.00 0.00 4.02
8 9 3.717294 GGAAAGCCGCCTCCTCCA 61.717 66.667 2.42 0.00 0.00 3.86
129 130 2.516460 GAGTAGCGCTCGAGGGGA 60.516 66.667 28.26 0.00 34.13 4.81
353 355 0.390124 AACGTCGTGTTCTAAGGGCA 59.610 50.000 0.00 0.00 35.27 5.36
428 437 2.823147 CTAGGCGTCCTCGTCGGT 60.823 66.667 1.46 0.00 46.96 4.69
488 503 1.663695 CCGGCGAAAGTCCACATTAT 58.336 50.000 9.30 0.00 0.00 1.28
547 563 5.866335 ATCGGCGTGACAAAATAAAAGTA 57.134 34.783 6.85 0.00 0.00 2.24
554 572 3.119990 CCACTTTATCGGCGTGACAAAAT 60.120 43.478 6.85 0.00 0.00 1.82
555 573 2.224549 CCACTTTATCGGCGTGACAAAA 59.775 45.455 6.85 1.11 0.00 2.44
560 579 0.108520 GACCCACTTTATCGGCGTGA 60.109 55.000 6.85 0.00 0.00 4.35
569 588 1.675219 GCTGGTCCGACCCACTTTA 59.325 57.895 15.24 0.00 37.50 1.85
573 592 4.309950 AACGCTGGTCCGACCCAC 62.310 66.667 15.24 6.02 37.50 4.61
597 616 0.956410 TTGTATTTGGGTCGGCGTGG 60.956 55.000 6.85 0.00 0.00 4.94
617 636 1.375551 GTGGACACAAACGTCTGGTT 58.624 50.000 0.00 0.00 41.76 3.67
692 712 2.814336 CACCTTAAGAGCAACTCCAACC 59.186 50.000 3.36 0.00 0.00 3.77
725 745 1.638589 ACCCCGGATGGATCTGAAAAA 59.361 47.619 0.73 0.00 37.49 1.94
729 749 2.443394 GCACCCCGGATGGATCTGA 61.443 63.158 0.73 0.00 37.49 3.27
736 756 1.202806 ACTAATCATGCACCCCGGATG 60.203 52.381 0.73 1.21 44.44 3.51
861 881 1.550524 TCACCTCAGCTTTCGCTACAT 59.449 47.619 0.00 0.00 46.99 2.29
950 976 0.166597 CGAGCGTGTGTAGTACGGAA 59.833 55.000 0.00 0.00 41.56 4.30
959 985 0.596600 CAGTTACCACGAGCGTGTGT 60.597 55.000 19.99 18.19 44.02 3.72
960 986 1.282248 CCAGTTACCACGAGCGTGTG 61.282 60.000 19.99 14.06 44.02 3.82
1387 1416 0.318441 GCACTAGTCACTCTGCACCA 59.682 55.000 0.00 0.00 0.00 4.17
1395 1424 1.853963 ATCGAAGGGCACTAGTCACT 58.146 50.000 0.00 0.00 0.00 3.41
1408 1437 2.222729 CCGGAACTTAACGCAATCGAAG 60.223 50.000 0.00 0.00 39.41 3.79
1578 1608 5.733373 GCAAACCCTGTCAAAAACTCTACAG 60.733 44.000 0.00 0.00 39.22 2.74
1674 1704 6.239600 CCCTAATACTGCATTGAAGGCTACTA 60.240 42.308 2.79 0.00 0.00 1.82
1785 1815 8.419076 ACAAACTGATGTGTAAAATTGGTTTC 57.581 30.769 0.00 0.00 30.82 2.78
1963 2044 4.787280 AGACTCCCTCGCCCTGGG 62.787 72.222 8.86 8.86 45.90 4.45
2042 2248 4.176271 GGATGCTTGCCTATTTGTTTGAC 58.824 43.478 0.00 0.00 0.00 3.18
2045 2251 3.172339 TGGGATGCTTGCCTATTTGTTT 58.828 40.909 11.49 0.00 33.70 2.83
2081 2287 0.036388 GGCATCCCACAAGACTTCGA 60.036 55.000 0.00 0.00 0.00 3.71
2113 2319 7.760794 GCATCACAAAATCAAATAGTCCATTCA 59.239 33.333 0.00 0.00 0.00 2.57
2238 2604 2.161486 GCAGCGCCTACTGAAGACG 61.161 63.158 2.29 0.00 40.25 4.18
2657 3227 9.300681 TCAAAAGGATGATAACAGTCAGAAAAT 57.699 29.630 0.00 0.00 0.00 1.82
2807 3377 5.238583 ACATACTGAGTAACCTTGCTGTTC 58.761 41.667 0.00 0.00 0.00 3.18
3020 3590 3.492421 AGAAATAACAAGCATGCGTGG 57.508 42.857 32.14 19.10 0.00 4.94
3122 3757 8.662141 GCATCAGAAGCACATTTATTTTGATTT 58.338 29.630 0.00 0.00 0.00 2.17
3123 3758 8.038944 AGCATCAGAAGCACATTTATTTTGATT 58.961 29.630 0.00 0.00 0.00 2.57
3124 3759 7.553334 AGCATCAGAAGCACATTTATTTTGAT 58.447 30.769 0.00 0.00 0.00 2.57
3125 3760 6.927416 AGCATCAGAAGCACATTTATTTTGA 58.073 32.000 0.00 0.00 0.00 2.69
3126 3761 6.255020 GGAGCATCAGAAGCACATTTATTTTG 59.745 38.462 0.00 0.00 36.25 2.44
3127 3762 6.071221 TGGAGCATCAGAAGCACATTTATTTT 60.071 34.615 0.00 0.00 36.25 1.82
3128 3763 5.419788 TGGAGCATCAGAAGCACATTTATTT 59.580 36.000 0.00 0.00 36.25 1.40
3129 3764 4.951715 TGGAGCATCAGAAGCACATTTATT 59.048 37.500 0.00 0.00 36.25 1.40
3130 3765 4.529897 TGGAGCATCAGAAGCACATTTAT 58.470 39.130 0.00 0.00 36.25 1.40
3131 3766 3.954200 TGGAGCATCAGAAGCACATTTA 58.046 40.909 0.00 0.00 36.25 1.40
3132 3767 2.799017 TGGAGCATCAGAAGCACATTT 58.201 42.857 0.00 0.00 36.25 2.32
3133 3768 2.502142 TGGAGCATCAGAAGCACATT 57.498 45.000 0.00 0.00 36.25 2.71
3134 3769 2.502142 TTGGAGCATCAGAAGCACAT 57.498 45.000 0.00 0.00 36.25 3.21
3135 3770 2.275134 TTTGGAGCATCAGAAGCACA 57.725 45.000 0.00 0.00 36.25 4.57
3136 3771 2.751259 TCATTTGGAGCATCAGAAGCAC 59.249 45.455 0.00 0.00 36.25 4.40
3137 3772 3.076079 TCATTTGGAGCATCAGAAGCA 57.924 42.857 0.00 0.00 36.25 3.91
3138 3773 3.442977 AGTTCATTTGGAGCATCAGAAGC 59.557 43.478 0.00 0.00 36.25 3.86
3139 3774 4.942483 AGAGTTCATTTGGAGCATCAGAAG 59.058 41.667 0.00 0.00 36.25 2.85
3140 3775 4.914983 AGAGTTCATTTGGAGCATCAGAA 58.085 39.130 0.00 0.00 36.25 3.02
3141 3776 4.564782 AGAGTTCATTTGGAGCATCAGA 57.435 40.909 0.00 0.00 36.25 3.27
3142 3777 4.942483 AGAAGAGTTCATTTGGAGCATCAG 59.058 41.667 0.00 0.00 36.25 2.90
3143 3778 4.914983 AGAAGAGTTCATTTGGAGCATCA 58.085 39.130 0.00 0.00 36.25 3.07
3144 3779 6.597280 AGTTAGAAGAGTTCATTTGGAGCATC 59.403 38.462 0.00 0.00 0.00 3.91
3145 3780 6.373774 CAGTTAGAAGAGTTCATTTGGAGCAT 59.626 38.462 0.00 0.00 0.00 3.79
3146 3781 5.702670 CAGTTAGAAGAGTTCATTTGGAGCA 59.297 40.000 0.00 0.00 0.00 4.26
3147 3782 5.391416 GCAGTTAGAAGAGTTCATTTGGAGC 60.391 44.000 0.00 0.00 0.00 4.70
3148 3783 5.123027 GGCAGTTAGAAGAGTTCATTTGGAG 59.877 44.000 0.00 0.00 0.00 3.86
3149 3784 5.003804 GGCAGTTAGAAGAGTTCATTTGGA 58.996 41.667 0.00 0.00 0.00 3.53
3150 3785 5.006386 AGGCAGTTAGAAGAGTTCATTTGG 58.994 41.667 0.00 0.00 0.00 3.28
3151 3786 5.702670 TCAGGCAGTTAGAAGAGTTCATTTG 59.297 40.000 0.00 0.00 0.00 2.32
3152 3787 5.869579 TCAGGCAGTTAGAAGAGTTCATTT 58.130 37.500 0.00 0.00 0.00 2.32
3153 3788 5.247110 TCTCAGGCAGTTAGAAGAGTTCATT 59.753 40.000 0.00 0.00 0.00 2.57
3154 3789 4.774726 TCTCAGGCAGTTAGAAGAGTTCAT 59.225 41.667 0.00 0.00 0.00 2.57
3155 3790 4.021894 GTCTCAGGCAGTTAGAAGAGTTCA 60.022 45.833 0.00 0.00 0.00 3.18
3156 3791 4.021894 TGTCTCAGGCAGTTAGAAGAGTTC 60.022 45.833 0.00 0.00 0.00 3.01
3157 3792 3.898123 TGTCTCAGGCAGTTAGAAGAGTT 59.102 43.478 0.00 0.00 0.00 3.01
3158 3793 3.501349 TGTCTCAGGCAGTTAGAAGAGT 58.499 45.455 0.00 0.00 0.00 3.24
3159 3794 4.734398 ATGTCTCAGGCAGTTAGAAGAG 57.266 45.455 0.00 0.00 0.00 2.85
3160 3795 5.510430 TCTATGTCTCAGGCAGTTAGAAGA 58.490 41.667 0.00 0.00 0.00 2.87
3161 3796 5.221224 CCTCTATGTCTCAGGCAGTTAGAAG 60.221 48.000 0.00 0.00 0.00 2.85
3162 3797 4.646945 CCTCTATGTCTCAGGCAGTTAGAA 59.353 45.833 0.00 0.00 0.00 2.10
3163 3798 4.211125 CCTCTATGTCTCAGGCAGTTAGA 58.789 47.826 0.00 0.00 0.00 2.10
3164 3799 3.320541 CCCTCTATGTCTCAGGCAGTTAG 59.679 52.174 0.00 0.00 0.00 2.34
3165 3800 3.300388 CCCTCTATGTCTCAGGCAGTTA 58.700 50.000 0.00 0.00 0.00 2.24
3166 3801 2.114616 CCCTCTATGTCTCAGGCAGTT 58.885 52.381 0.00 0.00 0.00 3.16
3167 3802 1.690845 CCCCTCTATGTCTCAGGCAGT 60.691 57.143 0.00 0.00 0.00 4.40
3168 3803 1.047002 CCCCTCTATGTCTCAGGCAG 58.953 60.000 0.00 0.00 0.00 4.85
3169 3804 0.636647 TCCCCTCTATGTCTCAGGCA 59.363 55.000 0.00 0.00 0.00 4.75
3170 3805 1.337118 CTCCCCTCTATGTCTCAGGC 58.663 60.000 0.00 0.00 0.00 4.85
3675 4344 1.448497 GGACACGGTTGACCCTTCA 59.552 57.895 0.00 0.00 31.90 3.02
3807 4476 1.927487 TGGAGCTGCCATCACAAAAT 58.073 45.000 1.53 0.00 43.33 1.82
3907 4578 1.327303 GAGACATGGCGAGGAGAGAT 58.673 55.000 0.00 0.00 0.00 2.75
4168 4840 5.470098 TCTTGTAAGTGGAGATGAGCAAAAC 59.530 40.000 0.00 0.00 0.00 2.43
4386 5060 8.531146 CAACATTTACCCTATCAAGTTCCATTT 58.469 33.333 0.00 0.00 0.00 2.32
4570 5244 9.431887 ACAAGTATGTTACTGTTCGTTATGAAT 57.568 29.630 0.00 0.00 39.39 2.57
5026 5700 7.449704 AGGAATTTCACAAGAAAACATAGAGCT 59.550 33.333 0.00 0.00 46.06 4.09
5027 5701 7.597386 AGGAATTTCACAAGAAAACATAGAGC 58.403 34.615 0.00 0.00 46.06 4.09
5028 5702 9.971922 AAAGGAATTTCACAAGAAAACATAGAG 57.028 29.630 0.00 0.00 46.06 2.43
5044 5718 8.090831 AGATTTTAGCACTGGAAAAGGAATTTC 58.909 33.333 0.00 0.00 45.55 2.17
5045 5719 7.966812 AGATTTTAGCACTGGAAAAGGAATTT 58.033 30.769 0.00 0.00 0.00 1.82
5046 5720 7.544804 AGATTTTAGCACTGGAAAAGGAATT 57.455 32.000 0.00 0.00 0.00 2.17
5047 5721 8.829373 ATAGATTTTAGCACTGGAAAAGGAAT 57.171 30.769 0.00 0.00 0.00 3.01
5048 5722 7.339466 GGATAGATTTTAGCACTGGAAAAGGAA 59.661 37.037 0.00 0.00 0.00 3.36
5049 5723 6.828785 GGATAGATTTTAGCACTGGAAAAGGA 59.171 38.462 0.00 0.00 0.00 3.36
5050 5724 6.830838 AGGATAGATTTTAGCACTGGAAAAGG 59.169 38.462 0.00 0.00 0.00 3.11
5051 5725 7.012799 GGAGGATAGATTTTAGCACTGGAAAAG 59.987 40.741 0.00 0.00 0.00 2.27
5052 5726 6.828785 GGAGGATAGATTTTAGCACTGGAAAA 59.171 38.462 0.00 0.00 0.00 2.29
5053 5727 6.069673 TGGAGGATAGATTTTAGCACTGGAAA 60.070 38.462 0.00 0.00 0.00 3.13
5054 5728 5.428457 TGGAGGATAGATTTTAGCACTGGAA 59.572 40.000 0.00 0.00 0.00 3.53
5055 5729 4.968719 TGGAGGATAGATTTTAGCACTGGA 59.031 41.667 0.00 0.00 0.00 3.86
5056 5730 5.296151 TGGAGGATAGATTTTAGCACTGG 57.704 43.478 0.00 0.00 0.00 4.00
5057 5731 6.204301 CACATGGAGGATAGATTTTAGCACTG 59.796 42.308 0.00 0.00 0.00 3.66
5058 5732 6.126652 ACACATGGAGGATAGATTTTAGCACT 60.127 38.462 0.00 0.00 0.00 4.40
5059 5733 6.058183 ACACATGGAGGATAGATTTTAGCAC 58.942 40.000 0.00 0.00 0.00 4.40
5060 5734 6.252599 ACACATGGAGGATAGATTTTAGCA 57.747 37.500 0.00 0.00 0.00 3.49
5061 5735 6.073548 CGAACACATGGAGGATAGATTTTAGC 60.074 42.308 0.00 0.00 0.00 3.09
5062 5736 6.986817 ACGAACACATGGAGGATAGATTTTAG 59.013 38.462 0.00 0.00 0.00 1.85
5063 5737 6.884832 ACGAACACATGGAGGATAGATTTTA 58.115 36.000 0.00 0.00 0.00 1.52
5064 5738 5.745227 ACGAACACATGGAGGATAGATTTT 58.255 37.500 0.00 0.00 0.00 1.82
5065 5739 5.359194 ACGAACACATGGAGGATAGATTT 57.641 39.130 0.00 0.00 0.00 2.17
5066 5740 4.499865 CGACGAACACATGGAGGATAGATT 60.500 45.833 0.00 0.00 0.00 2.40
5067 5741 3.004839 CGACGAACACATGGAGGATAGAT 59.995 47.826 0.00 0.00 0.00 1.98
5068 5742 2.357952 CGACGAACACATGGAGGATAGA 59.642 50.000 0.00 0.00 0.00 1.98
5069 5743 2.732366 CGACGAACACATGGAGGATAG 58.268 52.381 0.00 0.00 0.00 2.08
5070 5744 1.202371 GCGACGAACACATGGAGGATA 60.202 52.381 0.00 0.00 0.00 2.59
5073 5747 1.354337 CTGCGACGAACACATGGAGG 61.354 60.000 0.00 0.00 0.00 4.30
5454 6141 6.921332 TTCTCTTTTTCGACAAAACAACAC 57.079 33.333 0.00 0.00 30.89 3.32
5469 6156 7.288810 TGTGCATTCAGGTATTTTCTCTTTT 57.711 32.000 0.00 0.00 0.00 2.27
5479 6166 7.173907 GCAGAAGTTATATGTGCATTCAGGTAT 59.826 37.037 0.00 0.00 37.07 2.73
5483 6170 6.427974 CAGCAGAAGTTATATGTGCATTCAG 58.572 40.000 0.00 0.00 39.36 3.02
5488 6175 2.945008 GGCAGCAGAAGTTATATGTGCA 59.055 45.455 0.00 0.00 39.36 4.57
5489 6176 2.032549 CGGCAGCAGAAGTTATATGTGC 60.033 50.000 0.00 0.00 37.34 4.57
5490 6177 2.545526 CCGGCAGCAGAAGTTATATGTG 59.454 50.000 0.00 0.00 0.00 3.21
5491 6178 2.485479 CCCGGCAGCAGAAGTTATATGT 60.485 50.000 0.00 0.00 0.00 2.29
5687 9920 8.383318 TCCTTATCTTGCATAAGAAATACTGC 57.617 34.615 7.06 0.00 45.47 4.40
5732 10702 8.450578 TTGACAAAATCTCTGATGTAAACAGT 57.549 30.769 0.00 0.00 38.02 3.55
5819 10833 6.102663 GGTGGATGTAGGATATTTCTCATCG 58.897 44.000 0.00 0.00 34.43 3.84
5820 10834 6.102663 CGGTGGATGTAGGATATTTCTCATC 58.897 44.000 0.00 0.00 0.00 2.92
5866 10891 1.160137 GTCGACAGGTACGTGTAGGT 58.840 55.000 20.41 0.00 0.00 3.08
5906 10934 4.636206 GGATTAAACTAGACCAAGCACAGG 59.364 45.833 0.00 0.00 0.00 4.00
5909 10937 4.844884 AGGGATTAAACTAGACCAAGCAC 58.155 43.478 0.00 0.00 0.00 4.40
5914 10942 6.443849 ACTGATGAAGGGATTAAACTAGACCA 59.556 38.462 0.00 0.00 0.00 4.02
6009 11456 2.285668 CCTCTTGCAGGGGGAGGA 60.286 66.667 9.70 0.00 46.82 3.71
6037 11484 3.798511 GAGCTACCTGGGGTGCCC 61.799 72.222 0.00 0.00 45.71 5.36
6079 11526 3.969119 TTTACCGGTGGGGGTGGC 61.969 66.667 19.93 0.00 41.41 5.01
6081 11528 2.358984 CGTTTACCGGTGGGGGTG 60.359 66.667 19.93 0.00 41.41 4.61
6082 11529 2.451191 AACGTTTACCGGTGGGGGT 61.451 57.895 19.93 7.39 44.23 4.95
6083 11530 2.431244 AACGTTTACCGGTGGGGG 59.569 61.111 19.93 6.68 42.24 5.40
6098 11545 1.204312 GCGAGGTTTGCTCGACAAC 59.796 57.895 0.00 0.00 46.06 3.32
6128 11575 0.107459 AGAGAGAAATTCCCGCTGCC 60.107 55.000 0.00 0.00 0.00 4.85
6130 11577 1.565305 CGAGAGAGAAATTCCCGCTG 58.435 55.000 0.00 0.00 0.00 5.18



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.