Multiple sequence alignment - TraesCS2D01G210000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G210000 chr2D 100.000 6849 0 0 1 6849 165547766 165540918 0.000000e+00 12648.0
1 TraesCS2D01G210000 chr2D 96.491 57 2 0 5905 5961 165541806 165541750 2.030000e-15 95.3
2 TraesCS2D01G210000 chr2D 96.491 57 2 0 5961 6017 165541862 165541806 2.030000e-15 95.3
3 TraesCS2D01G210000 chr2D 92.500 40 2 1 3995 4034 165543523 165543485 1.000000e-03 56.5
4 TraesCS2D01G210000 chr2D 92.500 40 2 1 4244 4282 165543772 165543733 1.000000e-03 56.5
5 TraesCS2D01G210000 chr2B 95.007 3505 126 27 350 3821 231966567 231970055 0.000000e+00 5457.0
6 TraesCS2D01G210000 chr2B 94.533 1445 54 17 4510 5935 231970726 231972164 0.000000e+00 2207.0
7 TraesCS2D01G210000 chr2B 95.558 833 28 9 6019 6849 231972204 231973029 0.000000e+00 1325.0
8 TraesCS2D01G210000 chr2B 96.524 374 10 3 4000 4372 231970358 231970729 3.510000e-172 616.0
9 TraesCS2D01G210000 chr2B 88.122 362 26 7 1 352 231966090 231966444 1.370000e-111 414.0
10 TraesCS2D01G210000 chr2B 97.368 38 1 0 3992 4029 231970599 231970636 1.590000e-06 65.8
11 TraesCS2D01G210000 chr2B 100.000 28 0 0 4311 4338 797634652 797634679 1.200000e-02 52.8
12 TraesCS2D01G210000 chr2A 95.868 2396 58 14 1632 4003 185120707 185123085 0.000000e+00 3838.0
13 TraesCS2D01G210000 chr2A 92.575 1468 58 18 4510 5958 185123811 185125246 0.000000e+00 2060.0
14 TraesCS2D01G210000 chr2A 89.635 1563 114 21 1 1518 185119145 185120704 0.000000e+00 1945.0
15 TraesCS2D01G210000 chr2A 97.346 829 19 3 6021 6849 185125275 185126100 0.000000e+00 1406.0
16 TraesCS2D01G210000 chr2A 96.247 373 12 1 4000 4372 185123444 185123814 1.630000e-170 610.0
17 TraesCS2D01G210000 chr2A 95.620 137 6 0 4371 4507 101093073 101093209 3.220000e-53 220.0
18 TraesCS2D01G210000 chr2A 97.143 35 1 0 3995 4029 185123686 185123720 7.420000e-05 60.2
19 TraesCS2D01G210000 chr7B 95.302 149 6 1 4366 4513 685061345 685061197 1.150000e-57 235.0
20 TraesCS2D01G210000 chr6B 93.464 153 9 1 4369 4520 6007492 6007340 6.910000e-55 226.0
21 TraesCS2D01G210000 chr5D 93.878 147 7 2 4367 4512 296699366 296699221 3.220000e-53 220.0
22 TraesCS2D01G210000 chr3D 92.308 156 10 2 4357 4510 575838243 575838088 3.220000e-53 220.0
23 TraesCS2D01G210000 chr1B 93.333 150 8 2 4369 4517 642735468 642735616 3.220000e-53 220.0
24 TraesCS2D01G210000 chr5A 94.366 142 7 1 4374 4514 451784207 451784066 4.160000e-52 217.0
25 TraesCS2D01G210000 chr4D 94.203 138 8 0 4370 4507 318489149 318489012 1.940000e-50 211.0
26 TraesCS2D01G210000 chr1A 93.103 145 9 1 4367 4510 243798881 243798737 1.940000e-50 211.0
27 TraesCS2D01G210000 chr4A 96.774 31 1 0 4311 4341 323618620 323618590 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G210000 chr2D 165540918 165547766 6848 True 12648.0 12648 100.000000 1 6849 1 chr2D.!!$R1 6848
1 TraesCS2D01G210000 chr2B 231966090 231973029 6939 False 1680.8 5457 94.518667 1 6849 6 chr2B.!!$F2 6848
2 TraesCS2D01G210000 chr2A 185119145 185126100 6955 False 1653.2 3838 94.802333 1 6849 6 chr2A.!!$F2 6848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 281 0.108207 TTGTTAGGACCCGGCGAAAA 59.892 50.000 9.30 0.00 0.00 2.29 F
267 282 0.603439 TGTTAGGACCCGGCGAAAAC 60.603 55.000 9.30 3.87 0.00 2.43 F
704 884 1.003223 GTTGCGTGTACACCAAGAACC 60.003 52.381 22.37 12.07 0.00 3.62 F
1563 1744 0.179166 TATCCCGAACCGTCGTTTCG 60.179 55.000 16.84 16.84 46.21 3.46 F
2591 2780 1.000938 CAGTCCAACTTTCTTGCTGCC 60.001 52.381 0.00 0.00 0.00 4.85 F
3986 4192 0.595825 GCAAGGCACTGAAGCACAAC 60.596 55.000 0.00 0.00 40.86 3.32 F
4403 4972 0.039035 AGCTCTCCCGACTCTCAACT 59.961 55.000 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1499 1680 0.106335 TACCCCGCTCAAACGAAACA 59.894 50.000 0.00 0.00 34.06 2.83 R
1530 1711 1.650528 GGGATAGGACTGGGATGGAG 58.349 60.000 0.00 0.00 0.00 3.86 R
2605 2794 2.205074 GCTGCATCGTAGTTGCTACAT 58.795 47.619 0.13 0.00 40.77 2.29 R
3019 3218 5.129320 TGAGTTCTGATATGCACCTGTATGT 59.871 40.000 0.00 0.00 0.00 2.29 R
4384 4953 0.039035 AGTTGAGAGTCGGGAGAGCT 59.961 55.000 0.00 0.00 41.26 4.09 R
4843 5413 2.290641 GTCACAAGGTTGCCTTACTGTG 59.709 50.000 10.58 10.58 42.67 3.66 R
6231 6822 1.495579 ATGACCTTGGCAGCTCTGGT 61.496 55.000 3.94 3.94 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 3.711086 CTGACTCGACAGGTATCCATTG 58.289 50.000 0.00 0.00 34.64 2.82
113 114 5.972952 AGGCATGAAGTAGGGCTTTTGCA 62.973 47.826 0.00 0.00 44.12 4.08
153 154 8.594550 TGAGCCTAAGTAAATAGTTTGTCTCTT 58.405 33.333 3.49 0.00 0.00 2.85
154 155 9.089601 GAGCCTAAGTAAATAGTTTGTCTCTTC 57.910 37.037 0.00 0.00 0.00 2.87
191 202 0.725686 CGTGACGTCCACTCGACTAT 59.274 55.000 14.12 0.00 43.53 2.12
197 208 6.489675 GTGACGTCCACTCGACTATAAATTA 58.510 40.000 14.12 0.00 42.44 1.40
205 216 6.366332 CCACTCGACTATAAATTATGCTCCAC 59.634 42.308 0.00 0.00 0.00 4.02
258 273 4.202233 GCTCTAGTACCATTGTTAGGACCC 60.202 50.000 0.00 0.00 0.00 4.46
266 281 0.108207 TTGTTAGGACCCGGCGAAAA 59.892 50.000 9.30 0.00 0.00 2.29
267 282 0.603439 TGTTAGGACCCGGCGAAAAC 60.603 55.000 9.30 3.87 0.00 2.43
293 310 5.277974 CCTCAACATGTTGGTTTACTCACAG 60.278 44.000 32.54 19.89 40.78 3.66
348 365 5.669477 TGGGCCATAATTTGCAATTAAGAC 58.331 37.500 0.00 0.59 0.00 3.01
366 508 4.322101 AGACGTAGCACTTAAAATTGCG 57.678 40.909 0.00 0.00 43.87 4.85
544 716 7.545965 CCCATATATAGAGGATGTTTTGACGTC 59.454 40.741 9.11 9.11 0.00 4.34
561 733 5.922546 TGACGTCCATGAGAAATAAAAACG 58.077 37.500 14.12 0.00 0.00 3.60
562 734 5.467399 TGACGTCCATGAGAAATAAAAACGT 59.533 36.000 14.12 0.00 42.75 3.99
627 805 3.325753 AGGTCCACCTCAGCCTGC 61.326 66.667 0.00 0.00 44.77 4.85
640 818 3.679389 TCAGCCTGCTCTTCCTTTTTAG 58.321 45.455 0.00 0.00 0.00 1.85
704 884 1.003223 GTTGCGTGTACACCAAGAACC 60.003 52.381 22.37 12.07 0.00 3.62
744 924 3.264193 ACACTTGGATGGACATTAGCTGA 59.736 43.478 0.00 0.00 0.00 4.26
754 935 6.154203 TGGACATTAGCTGATGAAGTCTAG 57.846 41.667 23.98 0.00 0.00 2.43
787 968 3.695830 AAATGCCGTTCTAGAACTCCA 57.304 42.857 28.30 23.95 39.08 3.86
1018 1199 1.207089 GCAATTACCCTTTTGCCCTCC 59.793 52.381 0.00 0.00 41.82 4.30
1056 1237 4.944372 CCGCCGTATCCCGTGAGC 62.944 72.222 0.00 0.00 33.66 4.26
1257 1438 2.203280 TGCCGGTGGTGAGTTTGG 60.203 61.111 1.90 0.00 0.00 3.28
1317 1498 3.007323 GCCGTAGTTCCCCACCCT 61.007 66.667 0.00 0.00 0.00 4.34
1335 1516 2.864378 CTTCTGCATCCAGCTCGCCA 62.864 60.000 0.00 0.00 45.94 5.69
1464 1645 4.080807 TCACTTTGAGCGGGGTAATATGAA 60.081 41.667 0.00 0.00 0.00 2.57
1499 1680 1.388133 GCTCCCATCCCAAACCCTT 59.612 57.895 0.00 0.00 0.00 3.95
1530 1711 1.964373 CGGGGTAATATGGCACCGC 60.964 63.158 7.41 7.67 45.03 5.68
1563 1744 0.179166 TATCCCGAACCGTCGTTTCG 60.179 55.000 16.84 16.84 46.21 3.46
1570 1751 1.589779 GAACCGTCGTTTCGTTTGAGT 59.410 47.619 0.00 0.00 30.30 3.41
1594 1775 4.452733 CCGGGCGTCCTGAACTCC 62.453 72.222 3.66 0.00 29.82 3.85
1743 1926 6.316640 TCACCTTTTGAACTCATTTTGTACGA 59.683 34.615 0.00 0.00 0.00 3.43
1852 2038 6.705782 ACGCTACTCATGTAATTGAAATTCG 58.294 36.000 0.00 0.00 0.00 3.34
2358 2547 2.286872 CTGGAAGGTCATGCTGCTAAG 58.713 52.381 0.00 0.00 0.00 2.18
2446 2635 7.305813 TCAGTCTGTTAATAGGGTGTTTGTA 57.694 36.000 0.00 0.00 0.00 2.41
2591 2780 1.000938 CAGTCCAACTTTCTTGCTGCC 60.001 52.381 0.00 0.00 0.00 4.85
3019 3218 4.442706 GGCGTTAAATGAAGATCCTGAGA 58.557 43.478 0.00 0.00 0.00 3.27
3020 3219 4.271291 GGCGTTAAATGAAGATCCTGAGAC 59.729 45.833 0.00 0.00 0.00 3.36
3282 3486 8.417273 AGGTTTTATTAACTTATGCACCTTGT 57.583 30.769 0.00 0.00 0.00 3.16
3406 3610 8.304596 TGTGTTATTTGGTACTTGTTTGTTTGA 58.695 29.630 0.00 0.00 0.00 2.69
3791 3997 5.966853 TCCCAATTGTTTTTCCTTTTCCT 57.033 34.783 4.43 0.00 0.00 3.36
3955 4161 7.806014 TCACAAAACGATTAAGTTGCCTATTTC 59.194 33.333 0.00 0.00 34.14 2.17
3986 4192 0.595825 GCAAGGCACTGAAGCACAAC 60.596 55.000 0.00 0.00 40.86 3.32
4113 4681 4.623932 TGGCATTGATATAGGAGGACAC 57.376 45.455 0.00 0.00 0.00 3.67
4140 4708 9.903682 ATATTTTGAGAAAATGTGAACAGACTG 57.096 29.630 0.00 0.00 41.01 3.51
4327 4896 7.444183 TCTGAAACTTCATCTATTTTGGAACGT 59.556 33.333 0.00 0.00 36.46 3.99
4375 4944 7.444629 TGATTTGCATCTGATATTTAGAGCC 57.555 36.000 0.00 0.00 0.00 4.70
4376 4945 7.229308 TGATTTGCATCTGATATTTAGAGCCT 58.771 34.615 0.00 0.00 0.00 4.58
4377 4946 6.872628 TTTGCATCTGATATTTAGAGCCTG 57.127 37.500 0.00 0.00 0.00 4.85
4378 4947 5.557576 TGCATCTGATATTTAGAGCCTGT 57.442 39.130 0.00 0.00 0.00 4.00
4379 4948 5.933617 TGCATCTGATATTTAGAGCCTGTT 58.066 37.500 0.00 0.00 0.00 3.16
4380 4949 5.994054 TGCATCTGATATTTAGAGCCTGTTC 59.006 40.000 0.00 0.00 0.00 3.18
4381 4950 5.119898 GCATCTGATATTTAGAGCCTGTTCG 59.880 44.000 0.00 0.00 0.00 3.95
4382 4951 5.201713 TCTGATATTTAGAGCCTGTTCGG 57.798 43.478 0.00 0.00 0.00 4.30
4383 4952 4.893524 TCTGATATTTAGAGCCTGTTCGGA 59.106 41.667 0.00 0.00 33.16 4.55
4384 4953 5.362717 TCTGATATTTAGAGCCTGTTCGGAA 59.637 40.000 0.00 0.00 33.16 4.30
4385 4954 5.601662 TGATATTTAGAGCCTGTTCGGAAG 58.398 41.667 0.00 0.00 33.16 3.46
4386 4955 2.094762 TTTAGAGCCTGTTCGGAAGC 57.905 50.000 0.00 0.00 33.16 3.86
4387 4956 1.267121 TTAGAGCCTGTTCGGAAGCT 58.733 50.000 2.97 2.97 38.56 3.74
4388 4957 4.193653 GAGCCTGTTCGGAAGCTC 57.806 61.111 12.75 12.75 44.36 4.09
4389 4958 1.594310 GAGCCTGTTCGGAAGCTCT 59.406 57.895 18.09 3.25 46.50 4.09
4390 4959 0.459411 GAGCCTGTTCGGAAGCTCTC 60.459 60.000 18.09 7.85 46.50 3.20
4391 4960 1.448717 GCCTGTTCGGAAGCTCTCC 60.449 63.158 0.00 0.00 41.40 3.71
4392 4961 1.219393 CCTGTTCGGAAGCTCTCCC 59.781 63.158 8.72 0.55 41.87 4.30
4393 4962 1.153745 CTGTTCGGAAGCTCTCCCG 60.154 63.158 13.88 13.88 46.57 5.14
4398 4967 4.347865 GGAAGCTCTCCCGACTCT 57.652 61.111 0.00 0.00 38.44 3.24
4399 4968 2.112029 GGAAGCTCTCCCGACTCTC 58.888 63.158 0.00 0.00 38.44 3.20
4400 4969 0.681564 GGAAGCTCTCCCGACTCTCA 60.682 60.000 0.00 0.00 38.44 3.27
4401 4970 1.178276 GAAGCTCTCCCGACTCTCAA 58.822 55.000 0.00 0.00 0.00 3.02
4402 4971 0.892063 AAGCTCTCCCGACTCTCAAC 59.108 55.000 0.00 0.00 0.00 3.18
4403 4972 0.039035 AGCTCTCCCGACTCTCAACT 59.961 55.000 0.00 0.00 0.00 3.16
4404 4973 0.454196 GCTCTCCCGACTCTCAACTC 59.546 60.000 0.00 0.00 0.00 3.01
4405 4974 1.099689 CTCTCCCGACTCTCAACTCC 58.900 60.000 0.00 0.00 0.00 3.85
4406 4975 0.677098 TCTCCCGACTCTCAACTCCG 60.677 60.000 0.00 0.00 0.00 4.63
4407 4976 2.182030 CCCGACTCTCAACTCCGC 59.818 66.667 0.00 0.00 0.00 5.54
4408 4977 2.344203 CCCGACTCTCAACTCCGCT 61.344 63.158 0.00 0.00 0.00 5.52
4409 4978 1.137825 CCGACTCTCAACTCCGCTC 59.862 63.158 0.00 0.00 0.00 5.03
4410 4979 1.137825 CGACTCTCAACTCCGCTCC 59.862 63.158 0.00 0.00 0.00 4.70
4411 4980 1.137825 GACTCTCAACTCCGCTCCG 59.862 63.158 0.00 0.00 0.00 4.63
4412 4981 2.202676 CTCTCAACTCCGCTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
4431 5000 4.194720 CGAGGAGCCGGGTTCGAG 62.195 72.222 20.25 8.47 39.00 4.04
4432 5001 4.516195 GAGGAGCCGGGTTCGAGC 62.516 72.222 8.00 0.00 39.00 5.03
4458 5027 4.527157 GCGATTGTGCTGGCGCTC 62.527 66.667 7.64 0.00 45.41 5.03
4459 5028 3.869272 CGATTGTGCTGGCGCTCC 61.869 66.667 7.64 0.00 36.97 4.70
4460 5029 3.512516 GATTGTGCTGGCGCTCCC 61.513 66.667 7.64 0.00 36.97 4.30
4461 5030 3.984193 GATTGTGCTGGCGCTCCCT 62.984 63.158 7.64 0.00 36.97 4.20
4462 5031 3.984193 ATTGTGCTGGCGCTCCCTC 62.984 63.158 7.64 0.00 36.97 4.30
4482 5051 3.298958 CTCCGGGAGCTGCAGTTA 58.701 61.111 16.64 0.00 0.00 2.24
4483 5052 1.142748 CTCCGGGAGCTGCAGTTAG 59.857 63.158 16.64 4.45 0.00 2.34
4484 5053 2.187946 CCGGGAGCTGCAGTTAGG 59.812 66.667 16.64 9.98 0.00 2.69
4485 5054 2.187946 CGGGAGCTGCAGTTAGGG 59.812 66.667 16.64 0.00 0.00 3.53
4486 5055 2.359169 CGGGAGCTGCAGTTAGGGA 61.359 63.158 16.64 0.00 0.00 4.20
4487 5056 1.524482 GGGAGCTGCAGTTAGGGAG 59.476 63.158 16.64 0.00 0.00 4.30
4490 5059 2.512515 GCTGCAGTTAGGGAGCGG 60.513 66.667 16.64 0.00 42.37 5.52
4491 5060 3.019003 GCTGCAGTTAGGGAGCGGA 62.019 63.158 16.64 0.00 42.37 5.54
4492 5061 1.142748 CTGCAGTTAGGGAGCGGAG 59.857 63.158 5.25 0.00 36.79 4.63
4493 5062 2.303549 CTGCAGTTAGGGAGCGGAGG 62.304 65.000 5.25 0.00 36.79 4.30
4494 5063 3.095347 GCAGTTAGGGAGCGGAGGG 62.095 68.421 0.00 0.00 0.00 4.30
4495 5064 2.041819 AGTTAGGGAGCGGAGGGG 60.042 66.667 0.00 0.00 0.00 4.79
4496 5065 2.042230 GTTAGGGAGCGGAGGGGA 60.042 66.667 0.00 0.00 0.00 4.81
4497 5066 1.459730 GTTAGGGAGCGGAGGGGAT 60.460 63.158 0.00 0.00 0.00 3.85
4498 5067 1.152312 TTAGGGAGCGGAGGGGATC 60.152 63.158 0.00 0.00 0.00 3.36
4499 5068 2.674672 TTAGGGAGCGGAGGGGATCC 62.675 65.000 1.92 1.92 45.64 3.36
4506 5075 3.231298 GGAGGGGATCCGAACAGG 58.769 66.667 5.45 0.00 38.67 4.00
4507 5076 2.506472 GAGGGGATCCGAACAGGC 59.494 66.667 5.45 0.00 40.77 4.85
4508 5077 3.090532 AGGGGATCCGAACAGGCC 61.091 66.667 5.45 0.00 40.77 5.19
4533 5102 5.763876 AGTAACCAGAAGTGCTTTAGGAT 57.236 39.130 9.52 2.61 0.00 3.24
4542 5111 1.153429 GCTTTAGGATCACCGCGGT 60.153 57.895 28.70 28.70 41.83 5.68
4723 5293 2.355009 CGCAAGTTGCTTGGTGGC 60.355 61.111 24.61 0.00 42.25 5.01
4743 5313 4.181578 GGCGTGTCTCTATGTACACATTT 58.818 43.478 0.00 0.00 44.98 2.32
4745 5315 5.808540 GGCGTGTCTCTATGTACACATTTAA 59.191 40.000 0.00 0.00 44.98 1.52
4843 5413 4.647424 ATGCTACACTCTTCTACTCAGC 57.353 45.455 0.00 0.00 0.00 4.26
4854 5424 2.525368 TCTACTCAGCACAGTAAGGCA 58.475 47.619 0.00 0.00 0.00 4.75
4866 5436 3.389983 ACAGTAAGGCAACCTTGTGACTA 59.610 43.478 9.15 0.00 44.44 2.59
4887 5457 8.019669 TGACTACGTACTTCTCTATTTTGTGTC 58.980 37.037 0.00 0.00 0.00 3.67
5079 5649 7.071447 TGGTAGCAGTAGCATTAAGGGTAATAA 59.929 37.037 0.00 0.00 45.49 1.40
5317 5887 7.287927 TCTCAAGGAATACATCGAGAGGTAATT 59.712 37.037 1.68 0.00 31.01 1.40
5355 5925 5.326200 ACCGTGTAAGACTCTTATTCCAG 57.674 43.478 1.77 0.00 0.00 3.86
5669 6239 9.981114 AGTTTGGTATTTTGTAATTTCTCCTTG 57.019 29.630 0.00 0.00 0.00 3.61
5684 6254 2.738846 CTCCTTGTCTGTGTTCGAATGG 59.261 50.000 0.00 0.00 0.00 3.16
5701 6272 6.403333 CGAATGGATCGTTTTCTTCACTTA 57.597 37.500 0.00 0.00 46.52 2.24
5744 6315 6.821388 AGGTATCTGGTGATGAATGTTACTC 58.179 40.000 0.00 0.00 34.32 2.59
5793 6364 7.389803 TTGTGAAAAAGAAATCAGTCTGACA 57.610 32.000 10.88 0.00 0.00 3.58
5794 6365 7.019774 TGTGAAAAAGAAATCAGTCTGACAG 57.980 36.000 10.88 1.73 0.00 3.51
5798 6369 3.051081 AGAAATCAGTCTGACAGGTGC 57.949 47.619 10.88 0.00 0.00 5.01
5835 6406 5.588246 TCTGTGTGTACAAAGCTGAATGAAA 59.412 36.000 0.00 0.00 36.14 2.69
5867 6438 8.153550 AGTATCTGAGGTGGAAATCATCATAAC 58.846 37.037 0.00 0.00 0.00 1.89
5869 6440 6.720309 TCTGAGGTGGAAATCATCATAACAA 58.280 36.000 0.00 0.00 0.00 2.83
5873 6444 9.123902 TGAGGTGGAAATCATCATAACAAATAG 57.876 33.333 0.00 0.00 0.00 1.73
5874 6445 8.469309 AGGTGGAAATCATCATAACAAATAGG 57.531 34.615 0.00 0.00 0.00 2.57
5877 6448 7.287696 GTGGAAATCATCATAACAAATAGGGGT 59.712 37.037 0.00 0.00 0.00 4.95
5878 6449 7.843760 TGGAAATCATCATAACAAATAGGGGTT 59.156 33.333 0.00 0.00 0.00 4.11
5880 6451 9.750125 GAAATCATCATAACAAATAGGGGTTTC 57.250 33.333 0.00 0.00 0.00 2.78
5910 6499 8.345565 CCGCAAAACTTATCAATTAGCTCTAAT 58.654 33.333 0.00 0.00 37.36 1.73
5911 6500 9.722056 CGCAAAACTTATCAATTAGCTCTAATT 57.278 29.630 8.61 8.61 44.11 1.40
5943 6532 8.458052 TCATCACTTGCGTAAAATCAACATTAT 58.542 29.630 0.00 0.00 0.00 1.28
5994 6583 7.945033 TTTTCATCACTTGCCTAAAATCAAC 57.055 32.000 0.00 0.00 0.00 3.18
5995 6584 6.647334 TTCATCACTTGCCTAAAATCAACA 57.353 33.333 0.00 0.00 0.00 3.33
5996 6585 6.839124 TCATCACTTGCCTAAAATCAACAT 57.161 33.333 0.00 0.00 0.00 2.71
5997 6586 7.230849 TCATCACTTGCCTAAAATCAACATT 57.769 32.000 0.00 0.00 0.00 2.71
5998 6587 8.347004 TCATCACTTGCCTAAAATCAACATTA 57.653 30.769 0.00 0.00 0.00 1.90
5999 6588 8.970020 TCATCACTTGCCTAAAATCAACATTAT 58.030 29.630 0.00 0.00 0.00 1.28
6046 6635 7.010460 CGCTAATAATAGATCATTTCATGCCGA 59.990 37.037 0.00 0.00 0.00 5.54
6054 6643 5.533528 AGATCATTTCATGCCGAATCATCAA 59.466 36.000 0.00 0.00 32.32 2.57
6080 6669 7.165460 AGTACCCAAATAAAATGCAAGTACC 57.835 36.000 0.00 0.00 0.00 3.34
6084 6673 6.934083 ACCCAAATAAAATGCAAGTACCAAAG 59.066 34.615 0.00 0.00 0.00 2.77
6090 6679 6.918892 AAAATGCAAGTACCAAAGAAAACC 57.081 33.333 0.00 0.00 0.00 3.27
6113 6702 5.591472 CCAGAGAATTTTACATGATGCCAGA 59.409 40.000 0.00 0.00 0.00 3.86
6231 6822 9.461312 AAATGCATTTCTACAGTTATTACAGGA 57.539 29.630 18.99 0.00 0.00 3.86
6269 6860 6.828785 AGGTCATTTTTACGCCATATCTTTCT 59.171 34.615 0.00 0.00 0.00 2.52
6281 6872 3.365265 CTTTCTGGCCCCACGCAC 61.365 66.667 0.00 0.00 40.31 5.34
6439 7031 1.683917 GCCCGTCAGATAGATCACAGT 59.316 52.381 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.476202 CTAGGATATCGACAATTACAATGTCAA 57.524 33.333 7.36 0.00 45.90 3.18
47 48 9.862371 ATCTAGGATATCGACAATTACAATGTC 57.138 33.333 0.00 0.00 42.94 3.06
113 114 1.072159 GCTCAGGCTCACAAGGTGT 59.928 57.895 0.00 0.00 34.79 4.16
128 129 9.089601 GAAGAGACAAACTATTTACTTAGGCTC 57.910 37.037 0.00 0.00 29.65 4.70
153 154 4.279922 TCACGTCAGGATTTAGAACACAGA 59.720 41.667 0.00 0.00 0.00 3.41
154 155 4.386049 GTCACGTCAGGATTTAGAACACAG 59.614 45.833 0.00 0.00 0.00 3.66
213 224 5.125739 AGCTAGTACGCAGAATTTGTAGTCT 59.874 40.000 2.09 0.00 0.00 3.24
214 225 5.341617 AGCTAGTACGCAGAATTTGTAGTC 58.658 41.667 2.09 0.00 0.00 2.59
266 281 2.470057 AAACCAACATGTTGAGGGGT 57.530 45.000 34.76 23.10 42.93 4.95
267 282 3.496331 AGTAAACCAACATGTTGAGGGG 58.504 45.455 34.76 22.48 42.93 4.79
321 338 3.823281 TTGCAAATTATGGCCCATCTG 57.177 42.857 0.00 0.00 0.00 2.90
348 365 3.124636 ACTCCGCAATTTTAAGTGCTACG 59.875 43.478 12.30 3.81 46.80 3.51
594 771 7.064229 AGGTGGACCTTGTCTAATTGTTTTTA 58.936 34.615 0.00 0.00 46.09 1.52
611 789 3.322318 GAGCAGGCTGAGGTGGACC 62.322 68.421 20.86 0.00 0.00 4.46
627 805 8.286191 ACCATGCTATTTCTAAAAAGGAAGAG 57.714 34.615 0.00 0.00 0.00 2.85
704 884 6.255453 CCAAGTGTTTTGGAATGTTGTTACTG 59.745 38.462 0.00 0.00 42.06 2.74
754 935 4.900635 ACGGCATTTTGATGGATTAGTC 57.099 40.909 0.00 0.00 0.00 2.59
787 968 4.405116 TTTGCTTCAGGTTCTGCAATTT 57.595 36.364 0.00 0.00 43.53 1.82
1075 1256 3.474570 GCCGCCATGGGAGAGTCT 61.475 66.667 15.13 0.00 38.63 3.24
1237 1418 1.525995 AAACTCACCACCGGCAGTG 60.526 57.895 16.44 16.44 46.83 3.66
1240 1421 2.203280 CCAAACTCACCACCGGCA 60.203 61.111 0.00 0.00 0.00 5.69
1243 1424 2.604174 GCGACCAAACTCACCACCG 61.604 63.158 0.00 0.00 0.00 4.94
1257 1438 1.694018 TACGAGAGACAGAGCGCGAC 61.694 60.000 12.10 2.22 0.00 5.19
1308 1489 2.308722 GGATGCAGAAGGGTGGGGA 61.309 63.158 0.00 0.00 0.00 4.81
1317 1498 2.124983 GGCGAGCTGGATGCAGAA 60.125 61.111 19.59 0.00 45.94 3.02
1442 1623 3.804036 TCATATTACCCCGCTCAAAGTG 58.196 45.455 0.00 0.00 0.00 3.16
1444 1625 4.036380 GGTTTCATATTACCCCGCTCAAAG 59.964 45.833 0.00 0.00 0.00 2.77
1464 1645 3.322466 CAGGGACGGAGCAGGGTT 61.322 66.667 0.00 0.00 0.00 4.11
1471 1652 2.765807 ATGGGAGCAGGGACGGAG 60.766 66.667 0.00 0.00 0.00 4.63
1499 1680 0.106335 TACCCCGCTCAAACGAAACA 59.894 50.000 0.00 0.00 34.06 2.83
1530 1711 1.650528 GGGATAGGACTGGGATGGAG 58.349 60.000 0.00 0.00 0.00 3.86
1563 1744 2.983592 CCGGCACCCCACTCAAAC 60.984 66.667 0.00 0.00 0.00 2.93
1594 1775 6.073222 ACAAAGTATGGTTACTCAAAGCTTCG 60.073 38.462 0.00 0.00 37.70 3.79
1743 1926 8.915036 CAACAGGAACTATAACTAGATGGTACT 58.085 37.037 0.00 0.00 36.02 2.73
1809 1995 4.401202 AGCGTAAGGGGAAATAACCATTTG 59.599 41.667 0.00 0.00 34.04 2.32
1933 2119 9.672086 GTGCTTTACATACTCTCTTGATAGTAG 57.328 37.037 3.09 0.00 32.01 2.57
2158 2344 5.209818 AGACGTTACTGAGACCATGAAAA 57.790 39.130 0.00 0.00 0.00 2.29
2358 2547 7.303634 TCGACAATTGTTAGGATTAAAGAGC 57.696 36.000 13.36 0.00 0.00 4.09
2446 2635 8.340757 TGGTGGATAAATTAAGGGATTTGTAGT 58.659 33.333 0.00 0.00 31.96 2.73
2591 2780 2.277084 GCTACATGTTACCAAGTCCCG 58.723 52.381 2.30 0.00 0.00 5.14
2605 2794 2.205074 GCTGCATCGTAGTTGCTACAT 58.795 47.619 0.13 0.00 40.77 2.29
3019 3218 5.129320 TGAGTTCTGATATGCACCTGTATGT 59.871 40.000 0.00 0.00 0.00 2.29
3020 3219 5.604565 TGAGTTCTGATATGCACCTGTATG 58.395 41.667 0.00 0.00 0.00 2.39
3282 3486 6.478512 ACTGGGAAATTTTAACAGAAGCAA 57.521 33.333 18.55 0.00 33.57 3.91
3431 3636 6.959639 AACAAGAAAATTGCTAACAGAGGA 57.040 33.333 0.00 0.00 0.00 3.71
3955 4161 2.037847 CCTTGCTTTGGGGAGGGG 59.962 66.667 0.00 0.00 0.00 4.79
4063 4631 6.070251 TGTTCCTACTTTGCTCCTGATCATTA 60.070 38.462 0.00 0.00 0.00 1.90
4072 4640 3.191371 CCATTGTGTTCCTACTTTGCTCC 59.809 47.826 0.00 0.00 0.00 4.70
4113 4681 9.903682 AGTCTGTTCACATTTTCTCAAAATATG 57.096 29.630 0.00 0.00 38.97 1.78
4140 4708 6.801862 CCCGTTCAAAACATAGATGTCTTTTC 59.198 38.462 0.00 0.00 40.80 2.29
4275 4844 6.668541 TTGCAGTCTAGAGCAATGTAAATC 57.331 37.500 13.74 0.00 44.98 2.17
4327 4896 3.526019 CCCCTCAATTGGTTTACTCCCTA 59.474 47.826 5.42 0.00 0.00 3.53
4368 4937 1.204941 GAGCTTCCGAACAGGCTCTAA 59.795 52.381 11.69 0.00 45.15 2.10
4369 4938 0.818296 GAGCTTCCGAACAGGCTCTA 59.182 55.000 11.69 0.00 45.15 2.43
4370 4939 1.594310 GAGCTTCCGAACAGGCTCT 59.406 57.895 11.69 0.00 45.15 4.09
4371 4940 4.193653 GAGCTTCCGAACAGGCTC 57.806 61.111 5.40 5.40 43.07 4.70
4372 4941 1.594310 GAGAGCTTCCGAACAGGCT 59.406 57.895 0.00 0.00 40.77 4.58
4373 4942 1.448717 GGAGAGCTTCCGAACAGGC 60.449 63.158 0.00 0.00 40.77 4.85
4374 4943 4.921834 GGAGAGCTTCCGAACAGG 57.078 61.111 0.00 0.00 42.97 4.00
4381 4950 0.681564 TGAGAGTCGGGAGAGCTTCC 60.682 60.000 6.43 6.43 46.00 3.46
4382 4951 1.135228 GTTGAGAGTCGGGAGAGCTTC 60.135 57.143 0.00 0.00 41.26 3.86
4383 4952 0.892063 GTTGAGAGTCGGGAGAGCTT 59.108 55.000 0.00 0.00 41.26 3.74
4384 4953 0.039035 AGTTGAGAGTCGGGAGAGCT 59.961 55.000 0.00 0.00 41.26 4.09
4385 4954 0.454196 GAGTTGAGAGTCGGGAGAGC 59.546 60.000 0.00 0.00 41.26 4.09
4386 4955 1.099689 GGAGTTGAGAGTCGGGAGAG 58.900 60.000 0.00 0.00 41.26 3.20
4387 4956 0.677098 CGGAGTTGAGAGTCGGGAGA 60.677 60.000 0.00 0.00 0.00 3.71
4388 4957 1.803943 CGGAGTTGAGAGTCGGGAG 59.196 63.158 0.00 0.00 0.00 4.30
4389 4958 2.341101 GCGGAGTTGAGAGTCGGGA 61.341 63.158 0.00 0.00 0.00 5.14
4390 4959 2.182030 GCGGAGTTGAGAGTCGGG 59.818 66.667 0.00 0.00 0.00 5.14
4391 4960 1.137825 GAGCGGAGTTGAGAGTCGG 59.862 63.158 0.00 0.00 0.00 4.79
4392 4961 1.137825 GGAGCGGAGTTGAGAGTCG 59.862 63.158 0.00 0.00 0.00 4.18
4393 4962 1.137825 CGGAGCGGAGTTGAGAGTC 59.862 63.158 0.00 0.00 0.00 3.36
4394 4963 3.279183 CGGAGCGGAGTTGAGAGT 58.721 61.111 0.00 0.00 0.00 3.24
4414 4983 4.194720 CTCGAACCCGGCTCCTCG 62.195 72.222 0.00 0.66 36.24 4.63
4415 4984 4.516195 GCTCGAACCCGGCTCCTC 62.516 72.222 0.00 0.00 36.24 3.71
4435 5004 4.214383 CAGCACAATCGCGCGGAG 62.214 66.667 31.69 21.48 36.85 4.63
4465 5034 1.142748 CTAACTGCAGCTCCCGGAG 59.857 63.158 15.27 10.41 0.00 4.63
4466 5035 2.359169 CCTAACTGCAGCTCCCGGA 61.359 63.158 15.27 0.00 0.00 5.14
4467 5036 2.187946 CCTAACTGCAGCTCCCGG 59.812 66.667 15.27 3.61 0.00 5.73
4468 5037 2.187946 CCCTAACTGCAGCTCCCG 59.812 66.667 15.27 0.00 0.00 5.14
4469 5038 1.524482 CTCCCTAACTGCAGCTCCC 59.476 63.158 15.27 0.00 0.00 4.30
4470 5039 1.153269 GCTCCCTAACTGCAGCTCC 60.153 63.158 15.27 0.00 0.00 4.70
4471 5040 1.520342 CGCTCCCTAACTGCAGCTC 60.520 63.158 15.27 0.00 0.00 4.09
4472 5041 2.581354 CGCTCCCTAACTGCAGCT 59.419 61.111 15.27 3.62 0.00 4.24
4473 5042 2.512515 CCGCTCCCTAACTGCAGC 60.513 66.667 15.27 0.00 0.00 5.25
4474 5043 1.142748 CTCCGCTCCCTAACTGCAG 59.857 63.158 13.48 13.48 0.00 4.41
4475 5044 2.359169 CCTCCGCTCCCTAACTGCA 61.359 63.158 0.00 0.00 0.00 4.41
4476 5045 2.501610 CCTCCGCTCCCTAACTGC 59.498 66.667 0.00 0.00 0.00 4.40
4477 5046 2.435693 CCCCTCCGCTCCCTAACTG 61.436 68.421 0.00 0.00 0.00 3.16
4478 5047 1.962570 ATCCCCTCCGCTCCCTAACT 61.963 60.000 0.00 0.00 0.00 2.24
4479 5048 1.459730 ATCCCCTCCGCTCCCTAAC 60.460 63.158 0.00 0.00 0.00 2.34
4480 5049 1.152312 GATCCCCTCCGCTCCCTAA 60.152 63.158 0.00 0.00 0.00 2.69
4481 5050 2.526628 GATCCCCTCCGCTCCCTA 59.473 66.667 0.00 0.00 0.00 3.53
4482 5051 4.565850 GGATCCCCTCCGCTCCCT 62.566 72.222 0.00 0.00 33.29 4.20
4489 5058 3.108288 GCCTGTTCGGATCCCCTCC 62.108 68.421 6.06 0.00 41.07 4.30
4490 5059 2.506472 GCCTGTTCGGATCCCCTC 59.494 66.667 6.06 0.00 33.16 4.30
4491 5060 3.090532 GGCCTGTTCGGATCCCCT 61.091 66.667 6.06 0.00 33.16 4.79
4492 5061 1.342672 TAAGGCCTGTTCGGATCCCC 61.343 60.000 5.69 0.00 33.16 4.81
4493 5062 0.106894 CTAAGGCCTGTTCGGATCCC 59.893 60.000 5.69 0.00 33.16 3.85
4494 5063 0.831307 ACTAAGGCCTGTTCGGATCC 59.169 55.000 5.69 0.00 33.16 3.36
4495 5064 3.455327 GTTACTAAGGCCTGTTCGGATC 58.545 50.000 5.69 0.00 33.16 3.36
4496 5065 2.169978 GGTTACTAAGGCCTGTTCGGAT 59.830 50.000 5.69 0.00 33.16 4.18
4497 5066 1.551883 GGTTACTAAGGCCTGTTCGGA 59.448 52.381 5.69 0.00 33.16 4.55
4498 5067 1.276989 TGGTTACTAAGGCCTGTTCGG 59.723 52.381 5.69 0.00 0.00 4.30
4499 5068 2.232941 TCTGGTTACTAAGGCCTGTTCG 59.767 50.000 5.69 0.00 0.00 3.95
4500 5069 3.975168 TCTGGTTACTAAGGCCTGTTC 57.025 47.619 5.69 0.00 0.00 3.18
4501 5070 3.651423 ACTTCTGGTTACTAAGGCCTGTT 59.349 43.478 5.69 0.00 0.00 3.16
4502 5071 3.008049 CACTTCTGGTTACTAAGGCCTGT 59.992 47.826 5.69 2.73 0.00 4.00
4503 5072 3.600388 CACTTCTGGTTACTAAGGCCTG 58.400 50.000 5.69 0.00 0.00 4.85
4504 5073 2.027100 GCACTTCTGGTTACTAAGGCCT 60.027 50.000 0.00 0.00 0.00 5.19
4505 5074 2.027100 AGCACTTCTGGTTACTAAGGCC 60.027 50.000 0.00 0.00 0.00 5.19
4506 5075 3.336138 AGCACTTCTGGTTACTAAGGC 57.664 47.619 0.00 0.00 0.00 4.35
4507 5076 5.875359 CCTAAAGCACTTCTGGTTACTAAGG 59.125 44.000 0.00 0.00 37.11 2.69
4508 5077 6.698380 TCCTAAAGCACTTCTGGTTACTAAG 58.302 40.000 0.00 0.00 37.11 2.18
4542 5111 6.330004 TCTATGCTTTGCAATGAAAGAACA 57.670 33.333 15.97 3.89 43.62 3.18
4632 5201 9.777297 AAAAACAGCATAATTTACAACCTCAAT 57.223 25.926 0.00 0.00 0.00 2.57
4804 5374 2.429610 GCATACCGGTGGAAAGTAGAGA 59.570 50.000 19.93 0.00 0.00 3.10
4843 5413 2.290641 GTCACAAGGTTGCCTTACTGTG 59.709 50.000 10.58 10.58 42.67 3.66
4854 5424 4.826183 AGAGAAGTACGTAGTCACAAGGTT 59.174 41.667 2.79 0.00 43.93 3.50
4866 5436 6.978338 TGAGACACAAAATAGAGAAGTACGT 58.022 36.000 0.00 0.00 0.00 3.57
4887 5457 9.071221 GTTATCATTCGCATAGATCTACTTGAG 57.929 37.037 4.10 2.70 0.00 3.02
5079 5649 5.944599 AGATGTCTCACTGATGCTTTTCAAT 59.055 36.000 0.00 0.00 0.00 2.57
5317 5887 4.391155 ACACGGTAAAACTGGCATAAGAA 58.609 39.130 0.00 0.00 0.00 2.52
5324 5894 3.396560 AGTCTTACACGGTAAAACTGGC 58.603 45.455 3.05 0.00 0.00 4.85
5355 5925 7.435068 TTCAAGTTAGCTGAGTCCAATTAAC 57.565 36.000 0.00 0.00 0.00 2.01
5607 6177 2.343101 TCTGGATCTTTTTGTACGGCG 58.657 47.619 4.80 4.80 0.00 6.46
5684 6254 9.612620 ATTGTCAAATAAGTGAAGAAAACGATC 57.387 29.630 0.00 0.00 0.00 3.69
5716 6287 6.319048 ACATTCATCACCAGATACCTCTTT 57.681 37.500 0.00 0.00 31.88 2.52
5765 6336 9.139174 TCAGACTGATTTCTTTTTCACAAAAAC 57.861 29.630 0.00 0.00 35.57 2.43
5770 6341 6.038603 CCTGTCAGACTGATTTCTTTTTCACA 59.961 38.462 8.73 0.00 0.00 3.58
5786 6357 3.681897 CAGATAAACAGCACCTGTCAGAC 59.318 47.826 0.00 0.00 44.62 3.51
5793 6364 4.940046 CACAGATTCAGATAAACAGCACCT 59.060 41.667 0.00 0.00 0.00 4.00
5794 6365 4.697352 ACACAGATTCAGATAAACAGCACC 59.303 41.667 0.00 0.00 0.00 5.01
5798 6369 7.889589 TGTACACACAGATTCAGATAAACAG 57.110 36.000 0.00 0.00 0.00 3.16
5835 6406 4.574674 TTCCACCTCAGATACTTGCAAT 57.425 40.909 0.00 0.00 0.00 3.56
5969 6558 7.984050 TGTTGATTTTAGGCAAGTGATGAAAAA 59.016 29.630 0.00 0.00 0.00 1.94
5970 6559 7.495901 TGTTGATTTTAGGCAAGTGATGAAAA 58.504 30.769 0.00 0.00 0.00 2.29
5971 6560 7.048629 TGTTGATTTTAGGCAAGTGATGAAA 57.951 32.000 0.00 0.00 0.00 2.69
5972 6561 6.647334 TGTTGATTTTAGGCAAGTGATGAA 57.353 33.333 0.00 0.00 0.00 2.57
5973 6562 6.839124 ATGTTGATTTTAGGCAAGTGATGA 57.161 33.333 0.00 0.00 0.00 2.92
5995 6584 9.731819 CGGACGATAGCATAGTACAAATATAAT 57.268 33.333 0.00 0.00 42.67 1.28
5996 6585 7.699391 GCGGACGATAGCATAGTACAAATATAA 59.301 37.037 0.00 0.00 42.67 0.98
5997 6586 7.066645 AGCGGACGATAGCATAGTACAAATATA 59.933 37.037 0.00 0.00 42.67 0.86
5998 6587 6.034591 GCGGACGATAGCATAGTACAAATAT 58.965 40.000 0.00 0.00 42.67 1.28
5999 6588 5.182570 AGCGGACGATAGCATAGTACAAATA 59.817 40.000 0.00 0.00 42.67 1.40
6000 6589 4.022242 AGCGGACGATAGCATAGTACAAAT 60.022 41.667 0.00 0.00 42.67 2.32
6001 6590 3.317149 AGCGGACGATAGCATAGTACAAA 59.683 43.478 0.00 0.00 42.67 2.83
6002 6591 2.882761 AGCGGACGATAGCATAGTACAA 59.117 45.455 0.00 0.00 42.67 2.41
6003 6592 2.501261 AGCGGACGATAGCATAGTACA 58.499 47.619 0.00 0.00 42.67 2.90
6004 6593 4.675190 TTAGCGGACGATAGCATAGTAC 57.325 45.455 0.00 0.00 42.67 2.73
6005 6594 6.990341 TTATTAGCGGACGATAGCATAGTA 57.010 37.500 0.00 0.00 42.67 1.82
6006 6595 5.892160 TTATTAGCGGACGATAGCATAGT 57.108 39.130 0.00 0.00 42.67 2.12
6007 6596 7.862648 TCTATTATTAGCGGACGATAGCATAG 58.137 38.462 0.00 1.70 42.67 2.23
6008 6597 7.797038 TCTATTATTAGCGGACGATAGCATA 57.203 36.000 0.00 0.00 42.67 3.14
6009 6598 6.694877 TCTATTATTAGCGGACGATAGCAT 57.305 37.500 0.00 0.00 42.67 3.79
6010 6599 6.317893 TGATCTATTATTAGCGGACGATAGCA 59.682 38.462 0.00 0.00 42.67 3.49
6011 6600 6.726230 TGATCTATTATTAGCGGACGATAGC 58.274 40.000 0.00 0.00 42.67 2.97
6012 6601 9.737427 AAATGATCTATTATTAGCGGACGATAG 57.263 33.333 0.00 0.00 46.19 2.08
6013 6602 9.731819 GAAATGATCTATTATTAGCGGACGATA 57.268 33.333 0.00 0.00 0.00 2.92
6014 6603 8.251026 TGAAATGATCTATTATTAGCGGACGAT 58.749 33.333 0.00 0.00 0.00 3.73
6015 6604 7.599171 TGAAATGATCTATTATTAGCGGACGA 58.401 34.615 0.00 0.00 0.00 4.20
6016 6605 7.812309 TGAAATGATCTATTATTAGCGGACG 57.188 36.000 0.00 0.00 0.00 4.79
6054 6643 8.092068 GGTACTTGCATTTTATTTGGGTACTTT 58.908 33.333 0.00 0.00 0.00 2.66
6080 6669 9.748708 TCATGTAAAATTCTCTGGTTTTCTTTG 57.251 29.630 0.00 0.00 0.00 2.77
6084 6673 7.276438 GGCATCATGTAAAATTCTCTGGTTTTC 59.724 37.037 0.00 0.00 0.00 2.29
6089 6678 5.591472 TCTGGCATCATGTAAAATTCTCTGG 59.409 40.000 0.00 0.00 0.00 3.86
6090 6679 6.688637 TCTGGCATCATGTAAAATTCTCTG 57.311 37.500 0.00 0.00 0.00 3.35
6113 6702 6.891908 AGGTTTTAAGCCATTCACACATCTAT 59.108 34.615 0.00 0.00 0.00 1.98
6169 6759 2.034687 ATGCAGCTCGCCCTTTGT 59.965 55.556 0.00 0.00 41.33 2.83
6231 6822 1.495579 ATGACCTTGGCAGCTCTGGT 61.496 55.000 3.94 3.94 0.00 4.00
6281 6872 2.862541 TGTGATTTGTGGTCTTCAGGG 58.137 47.619 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.