Multiple sequence alignment - TraesCS2D01G209400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G209400 chr2D 100.000 9382 0 0 1 9382 165332435 165341816 0.000000e+00 17326.0
1 TraesCS2D01G209400 chr2D 88.781 1649 100 41 703 2276 165485905 165484267 0.000000e+00 1941.0
2 TraesCS2D01G209400 chr2D 92.103 1013 64 10 7642 8649 165484271 165483270 0.000000e+00 1413.0
3 TraesCS2D01G209400 chr2D 93.960 447 16 3 261 704 165492351 165491913 0.000000e+00 665.0
4 TraesCS2D01G209400 chr2D 96.853 286 9 0 7356 7641 165334711 165334996 6.590000e-131 479.0
5 TraesCS2D01G209400 chr2D 96.853 286 9 0 2277 2562 165339790 165340075 6.590000e-131 479.0
6 TraesCS2D01G209400 chr3D 95.955 5389 186 9 2277 7641 614090906 614096286 0.000000e+00 8715.0
7 TraesCS2D01G209400 chr3D 96.853 286 9 0 7356 7641 614090906 614091191 6.590000e-131 479.0
8 TraesCS2D01G209400 chr3D 96.853 286 9 0 2277 2562 614096001 614096286 6.590000e-131 479.0
9 TraesCS2D01G209400 chr3D 78.403 764 128 20 7642 8380 464808504 464807753 6.640000e-126 462.0
10 TraesCS2D01G209400 chr4D 97.369 4371 110 4 3276 7642 74364228 74359859 0.000000e+00 7430.0
11 TraesCS2D01G209400 chr4D 95.625 4091 173 5 3555 7641 139506591 139502503 0.000000e+00 6558.0
12 TraesCS2D01G209400 chr4D 94.564 1306 42 12 2276 3560 139524473 139523176 0.000000e+00 1991.0
13 TraesCS2D01G209400 chr4D 95.114 1187 38 6 2277 3443 74365413 74364227 0.000000e+00 1853.0
14 TraesCS2D01G209400 chr4D 97.902 286 6 0 2277 2562 74360145 74359860 6.540000e-136 496.0
15 TraesCS2D01G209400 chr4D 96.194 289 10 1 2277 2565 139502787 139502500 1.100000e-128 472.0
16 TraesCS2D01G209400 chr2A 88.636 5324 530 38 2372 7641 166234211 166239513 0.000000e+00 6410.0
17 TraesCS2D01G209400 chr2A 83.782 4495 684 30 2590 7053 616127843 616123363 0.000000e+00 4220.0
18 TraesCS2D01G209400 chr2A 91.829 1285 81 14 998 2276 185364916 185363650 0.000000e+00 1770.0
19 TraesCS2D01G209400 chr2A 93.558 1009 33 15 1 999 185365932 185364946 0.000000e+00 1474.0
20 TraesCS2D01G209400 chr2A 90.126 1114 67 19 698 1779 185264400 185265502 0.000000e+00 1408.0
21 TraesCS2D01G209400 chr2A 92.492 959 69 2 7642 8597 185363654 185362696 0.000000e+00 1369.0
22 TraesCS2D01G209400 chr2A 90.881 987 72 11 7642 8622 185269851 185270825 0.000000e+00 1308.0
23 TraesCS2D01G209400 chr2A 95.418 371 11 3 329 696 185262020 185262387 3.770000e-163 586.0
24 TraesCS2D01G209400 chr2A 84.211 228 20 6 8588 8800 185362475 185362249 3.430000e-49 207.0
25 TraesCS2D01G209400 chr2A 84.456 193 24 5 7451 7641 166234211 166234399 1.610000e-42 185.0
26 TraesCS2D01G209400 chr2A 82.857 175 22 6 4 173 757557088 757556917 5.870000e-32 150.0
27 TraesCS2D01G209400 chr2A 97.403 77 2 0 261 337 185261521 185261597 2.130000e-26 132.0
28 TraesCS2D01G209400 chr2A 95.000 60 3 0 8804 8863 185362106 185362047 2.790000e-15 95.3
29 TraesCS2D01G209400 chr1A 88.192 5403 542 51 2277 7644 462135228 462129887 0.000000e+00 6355.0
30 TraesCS2D01G209400 chr1A 80.838 167 25 7 8220 8382 481675571 481675734 3.560000e-24 124.0
31 TraesCS2D01G209400 chr7D 92.048 4414 313 16 3238 7642 139199032 139194648 0.000000e+00 6172.0
32 TraesCS2D01G209400 chr7D 81.667 4931 818 52 2492 7393 8816742 8811869 0.000000e+00 4019.0
33 TraesCS2D01G209400 chr7D 83.545 1337 171 39 962 2276 149181041 149182350 0.000000e+00 1205.0
34 TraesCS2D01G209400 chr7D 88.052 996 83 14 2268 3240 139233482 139232500 0.000000e+00 1147.0
35 TraesCS2D01G209400 chr7D 85.155 1098 144 17 1193 2276 149085779 149084687 0.000000e+00 1107.0
36 TraesCS2D01G209400 chr7D 82.850 758 119 8 7642 8395 149084691 149083941 0.000000e+00 669.0
37 TraesCS2D01G209400 chr2B 85.643 5419 684 60 2269 7643 61458920 61464288 0.000000e+00 5611.0
38 TraesCS2D01G209400 chr2B 93.707 1589 69 12 698 2276 232291810 232290243 0.000000e+00 2351.0
39 TraesCS2D01G209400 chr2B 93.867 1386 74 6 893 2276 232261212 232262588 0.000000e+00 2078.0
40 TraesCS2D01G209400 chr2B 94.459 758 40 1 7643 8400 232290246 232289491 0.000000e+00 1166.0
41 TraesCS2D01G209400 chr2B 91.329 715 32 12 1 692 232292712 232292005 0.000000e+00 950.0
42 TraesCS2D01G209400 chr2B 93.002 543 38 0 7642 8184 232262584 232263126 0.000000e+00 793.0
43 TraesCS2D01G209400 chr2B 87.734 481 38 15 1 463 232248667 232249144 8.290000e-150 542.0
44 TraesCS2D01G209400 chr2B 83.471 605 63 21 8804 9382 232288612 232288019 6.450000e-146 529.0
45 TraesCS2D01G209400 chr2B 90.661 257 12 2 448 692 232257059 232257315 1.950000e-86 331.0
46 TraesCS2D01G209400 chr2B 88.942 208 8 6 698 901 232257504 232257700 9.410000e-60 243.0
47 TraesCS2D01G209400 chr2B 87.560 209 13 5 291 499 232246800 232246995 7.330000e-56 230.0
48 TraesCS2D01G209400 chr4A 89.591 4400 423 14 2469 6843 374696230 374691841 0.000000e+00 5555.0
49 TraesCS2D01G209400 chr4A 82.553 235 29 8 2 224 176878514 176878748 7.430000e-46 196.0
50 TraesCS2D01G209400 chr7B 84.597 4999 696 50 2683 7641 111952384 111947420 0.000000e+00 4898.0
51 TraesCS2D01G209400 chr7B 81.085 5403 923 69 2294 7642 643747279 643752636 0.000000e+00 4224.0
52 TraesCS2D01G209400 chr7B 85.912 1086 135 15 1193 2276 111942447 111943516 0.000000e+00 1142.0
53 TraesCS2D01G209400 chr6A 89.400 3783 357 18 2276 6026 33375847 33372077 0.000000e+00 4724.0
54 TraesCS2D01G209400 chr6A 86.574 931 88 18 2275 3174 357374498 357375422 0.000000e+00 992.0
55 TraesCS2D01G209400 chr6A 82.609 299 33 12 2277 2562 357404069 357404361 7.280000e-61 246.0
56 TraesCS2D01G209400 chr7A 85.243 1091 152 9 1193 2276 150021870 150022958 0.000000e+00 1114.0
57 TraesCS2D01G209400 chr7A 82.237 760 120 9 7642 8397 149861648 149860900 7.940000e-180 641.0
58 TraesCS2D01G209400 chr5B 88.993 536 57 2 1193 1727 679311136 679311670 0.000000e+00 662.0
59 TraesCS2D01G209400 chr5B 78.723 752 142 15 7643 8388 679313012 679313751 3.940000e-133 486.0
60 TraesCS2D01G209400 chr3A 79.787 752 128 20 7642 8380 608195302 608194562 8.350000e-145 525.0
61 TraesCS2D01G209400 chr3A 84.267 464 71 2 1814 2276 608195760 608195298 1.440000e-122 451.0
62 TraesCS2D01G209400 chr3A 75.167 749 152 26 7656 8382 608346898 608346162 1.180000e-83 322.0
63 TraesCS2D01G209400 chr3A 81.780 236 29 10 2 224 587592013 587592247 1.610000e-42 185.0
64 TraesCS2D01G209400 chr1D 78.220 427 79 10 7749 8168 381020131 381020550 2.600000e-65 261.0
65 TraesCS2D01G209400 chr1D 80.786 229 32 7 4 223 251794910 251795135 1.620000e-37 169.0
66 TraesCS2D01G209400 chr6B 81.013 237 29 11 2 224 11251883 11251649 3.480000e-39 174.0
67 TraesCS2D01G209400 chr3B 78.629 248 34 12 4 236 118579987 118580230 7.590000e-31 147.0
68 TraesCS2D01G209400 chr1B 83.212 137 19 4 8248 8382 510810469 510810603 1.280000e-23 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G209400 chr2D 165332435 165341816 9381 False 17326.000000 17326 100.000000 1 9382 1 chr2D.!!$F1 9381
1 TraesCS2D01G209400 chr2D 165483270 165485905 2635 True 1677.000000 1941 90.442000 703 8649 2 chr2D.!!$R2 7946
2 TraesCS2D01G209400 chr3D 614090906 614096286 5380 False 8715.000000 8715 95.955000 2277 7641 1 chr3D.!!$F1 5364
3 TraesCS2D01G209400 chr3D 464807753 464808504 751 True 462.000000 462 78.403000 7642 8380 1 chr3D.!!$R1 738
4 TraesCS2D01G209400 chr4D 74359859 74364228 4369 True 7430.000000 7430 97.369000 3276 7642 1 chr4D.!!$R1 4366
5 TraesCS2D01G209400 chr4D 139502500 139506591 4091 True 3515.000000 6558 95.909500 2277 7641 2 chr4D.!!$R5 5364
6 TraesCS2D01G209400 chr4D 139523176 139524473 1297 True 1991.000000 1991 94.564000 2276 3560 1 chr4D.!!$R4 1284
7 TraesCS2D01G209400 chr4D 74364227 74365413 1186 True 1853.000000 1853 95.114000 2277 3443 1 chr4D.!!$R3 1166
8 TraesCS2D01G209400 chr2A 166234211 166239513 5302 False 6410.000000 6410 88.636000 2372 7641 1 chr2A.!!$F1 5269
9 TraesCS2D01G209400 chr2A 616123363 616127843 4480 True 4220.000000 4220 83.782000 2590 7053 1 chr2A.!!$R1 4463
10 TraesCS2D01G209400 chr2A 185269851 185270825 974 False 1308.000000 1308 90.881000 7642 8622 1 chr2A.!!$F3 980
11 TraesCS2D01G209400 chr2A 185362047 185365932 3885 True 983.060000 1770 91.418000 1 8863 5 chr2A.!!$R3 8862
12 TraesCS2D01G209400 chr2A 185261521 185265502 3981 False 708.666667 1408 94.315667 261 1779 3 chr2A.!!$F4 1518
13 TraesCS2D01G209400 chr1A 462129887 462135228 5341 True 6355.000000 6355 88.192000 2277 7644 1 chr1A.!!$R1 5367
14 TraesCS2D01G209400 chr7D 139194648 139199032 4384 True 6172.000000 6172 92.048000 3238 7642 1 chr7D.!!$R2 4404
15 TraesCS2D01G209400 chr7D 8811869 8816742 4873 True 4019.000000 4019 81.667000 2492 7393 1 chr7D.!!$R1 4901
16 TraesCS2D01G209400 chr7D 149181041 149182350 1309 False 1205.000000 1205 83.545000 962 2276 1 chr7D.!!$F1 1314
17 TraesCS2D01G209400 chr7D 139232500 139233482 982 True 1147.000000 1147 88.052000 2268 3240 1 chr7D.!!$R3 972
18 TraesCS2D01G209400 chr7D 149083941 149085779 1838 True 888.000000 1107 84.002500 1193 8395 2 chr7D.!!$R4 7202
19 TraesCS2D01G209400 chr2B 61458920 61464288 5368 False 5611.000000 5611 85.643000 2269 7643 1 chr2B.!!$F1 5374
20 TraesCS2D01G209400 chr2B 232288019 232292712 4693 True 1249.000000 2351 90.741500 1 9382 4 chr2B.!!$R1 9381
21 TraesCS2D01G209400 chr2B 232257059 232263126 6067 False 861.250000 2078 91.618000 448 8184 4 chr2B.!!$F3 7736
22 TraesCS2D01G209400 chr2B 232246800 232249144 2344 False 386.000000 542 87.647000 1 499 2 chr2B.!!$F2 498
23 TraesCS2D01G209400 chr4A 374691841 374696230 4389 True 5555.000000 5555 89.591000 2469 6843 1 chr4A.!!$R1 4374
24 TraesCS2D01G209400 chr7B 111947420 111952384 4964 True 4898.000000 4898 84.597000 2683 7641 1 chr7B.!!$R1 4958
25 TraesCS2D01G209400 chr7B 643747279 643752636 5357 False 4224.000000 4224 81.085000 2294 7642 1 chr7B.!!$F2 5348
26 TraesCS2D01G209400 chr7B 111942447 111943516 1069 False 1142.000000 1142 85.912000 1193 2276 1 chr7B.!!$F1 1083
27 TraesCS2D01G209400 chr6A 33372077 33375847 3770 True 4724.000000 4724 89.400000 2276 6026 1 chr6A.!!$R1 3750
28 TraesCS2D01G209400 chr6A 357374498 357375422 924 False 992.000000 992 86.574000 2275 3174 1 chr6A.!!$F1 899
29 TraesCS2D01G209400 chr7A 150021870 150022958 1088 False 1114.000000 1114 85.243000 1193 2276 1 chr7A.!!$F1 1083
30 TraesCS2D01G209400 chr7A 149860900 149861648 748 True 641.000000 641 82.237000 7642 8397 1 chr7A.!!$R1 755
31 TraesCS2D01G209400 chr5B 679311136 679313751 2615 False 574.000000 662 83.858000 1193 8388 2 chr5B.!!$F1 7195
32 TraesCS2D01G209400 chr3A 608194562 608195760 1198 True 488.000000 525 82.027000 1814 8380 2 chr3A.!!$R2 6566
33 TraesCS2D01G209400 chr3A 608346162 608346898 736 True 322.000000 322 75.167000 7656 8382 1 chr3A.!!$R1 726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 2857 0.901827 TTCGGAGCTATGCTGGTTGA 59.098 50.000 0.00 0.00 39.88 3.18 F
1175 9165 0.176449 TCTCACATGGATGGTGCTCG 59.824 55.000 0.00 0.00 36.22 5.03 F
1176 9166 0.176449 CTCACATGGATGGTGCTCGA 59.824 55.000 0.00 0.00 36.22 4.04 F
1714 9711 1.160329 GGGCCGCTATACAACTGCTG 61.160 60.000 0.00 0.00 0.00 4.41 F
3375 12244 0.038455 ACGCTGTGGAGTAGAGGAGT 59.962 55.000 0.00 0.00 0.00 3.85 F
3636 12505 0.609957 CCATGGTCAGCTCTTGCCAA 60.610 55.000 2.57 0.00 40.80 4.52 F
5116 13997 0.109272 TGATGTCGTTGAGGCGTCTC 60.109 55.000 10.89 10.89 40.97 3.36 F
5637 14519 1.203162 TCCAACCAATCCATGCCAAGT 60.203 47.619 0.00 0.00 0.00 3.16 F
6445 15345 0.175073 GAACTCCTGGCGGTATTCGT 59.825 55.000 0.00 0.00 41.72 3.85 F
6771 15671 0.465460 GTTGGTGGAGTTGTGGCTCA 60.465 55.000 0.00 0.00 37.24 4.26 F
7430 16346 0.614697 TGAGGATGGCGTGAGGAAGA 60.615 55.000 0.00 0.00 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1421 9418 0.034380 TGTAGACGTAGCTCTGGCCT 60.034 55.000 3.32 0.0 39.73 5.19 R
2960 11811 0.827925 AGAAGTCTGTGGTGAGCCGA 60.828 55.000 0.00 0.0 37.67 5.54 R
2999 11850 1.549170 GTCGGGGAGCAAGTTCTTCTA 59.451 52.381 0.00 0.0 0.00 2.10 R
3537 12406 0.944386 GCTTCACCAAGTTCGCTCAA 59.056 50.000 0.00 0.0 31.45 3.02 R
4730 13602 1.014352 GCACCAGTTATACGCCAAGG 58.986 55.000 0.00 0.0 0.00 3.61 R
5401 14282 0.447406 CAAAGTCGCGCATTCCATCA 59.553 50.000 8.75 0.0 0.00 3.07 R
6097 14982 0.179018 AACGGGCTCTGCTTCAAGTT 60.179 50.000 0.00 0.0 0.00 2.66 R
6551 15451 0.534877 TCGTCAAACACATGCTGGCT 60.535 50.000 0.00 0.0 0.00 4.75 R
8039 16983 0.250597 GGGTCGTAGTTGCCAAACCT 60.251 55.000 0.00 0.0 36.94 3.50 R
8315 17298 0.752376 GTAGGCTCCCGTCTAGCACT 60.752 60.000 0.00 0.0 41.93 4.40 R
9001 18694 0.248990 GAGTGCATGAGCGAGAGAGG 60.249 60.000 0.00 0.0 46.23 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 1900 5.702209 TGTAGTTACAAAAGAATCGGTTCCC 59.298 40.000 4.40 0.00 32.19 3.97
96 1972 8.090788 AGCCTATTCACTAGATTTTTAGTCCA 57.909 34.615 0.00 0.00 31.64 4.02
255 2142 5.678483 GCACGCTCACTAATGTATGAAAATG 59.322 40.000 0.00 0.00 0.00 2.32
290 2177 1.002624 TTGATCGGGTTGGGTGAGC 60.003 57.895 0.00 0.00 0.00 4.26
529 2857 0.901827 TTCGGAGCTATGCTGGTTGA 59.098 50.000 0.00 0.00 39.88 3.18
648 2976 2.843401 TTAAGCCGCAGAACCTAACA 57.157 45.000 0.00 0.00 0.00 2.41
762 5119 2.700897 GGCTCCACTCCAAAGCTATAGA 59.299 50.000 3.21 0.00 36.29 1.98
790 5155 2.438075 GCTCAAGCTCCTGCCTGG 60.438 66.667 0.00 0.00 40.80 4.45
993 8887 4.669206 AGAGCTCATCAAGATCGACAAT 57.331 40.909 17.77 0.00 45.33 2.71
1173 9163 2.885135 TTTCTCACATGGATGGTGCT 57.115 45.000 0.00 0.00 36.22 4.40
1174 9164 2.408271 TTCTCACATGGATGGTGCTC 57.592 50.000 0.00 0.00 36.22 4.26
1175 9165 0.176449 TCTCACATGGATGGTGCTCG 59.824 55.000 0.00 0.00 36.22 5.03
1176 9166 0.176449 CTCACATGGATGGTGCTCGA 59.824 55.000 0.00 0.00 36.22 4.04
1331 9328 4.980805 ACCAACCACGTCGCGCAT 62.981 61.111 8.75 0.00 0.00 4.73
1421 9418 1.375908 GCAGTGCCCGATTCAGACA 60.376 57.895 2.85 0.00 0.00 3.41
1578 9575 2.123683 TTGCGCCCCACAAGGAAA 60.124 55.556 4.18 0.00 38.24 3.13
1628 9625 2.280552 GGACACGGAGGCACTGGTA 61.281 63.158 0.00 0.00 41.55 3.25
1714 9711 1.160329 GGGCCGCTATACAACTGCTG 61.160 60.000 0.00 0.00 0.00 4.41
1803 10605 3.056322 GGTAACCAGTATTCTCACCGTGT 60.056 47.826 0.00 0.00 0.00 4.49
1812 10618 4.963318 ATTCTCACCGTGTATCCATGAT 57.037 40.909 0.00 0.00 0.00 2.45
1813 10619 3.733443 TCTCACCGTGTATCCATGATG 57.267 47.619 0.00 0.00 0.00 3.07
2314 11143 1.581223 TCGAGGAGACCAGAGTAGGA 58.419 55.000 0.00 0.00 0.00 2.94
2353 11184 2.367202 GGATGGCGTGAGGAAGGGA 61.367 63.158 0.00 0.00 0.00 4.20
2448 11287 1.857965 GGTTAAGTACCCCTCGACCT 58.142 55.000 0.00 0.00 41.43 3.85
2569 11412 1.983224 CCGTGGTGACATTCTCCCT 59.017 57.895 0.00 0.00 46.14 4.20
2732 11582 2.288666 GCGTTGCCCTTCATCATTCTA 58.711 47.619 0.00 0.00 0.00 2.10
2950 11801 3.314080 CCAAAGAACTTGAACGCCAACTA 59.686 43.478 0.00 0.00 37.17 2.24
2999 11850 6.490040 ACTTCTGTACATATGGTTGCAGTTTT 59.510 34.615 7.80 0.00 34.74 2.43
3141 12009 1.607178 CAAGGCTGGTTGGGATGCA 60.607 57.895 0.00 0.00 0.00 3.96
3178 12046 2.809601 CCTCGTTGGCTTCGACCG 60.810 66.667 0.00 0.00 33.71 4.79
3251 12119 0.901827 TACCAGAATTCAGCAGCGGA 59.098 50.000 8.44 0.00 0.00 5.54
3375 12244 0.038455 ACGCTGTGGAGTAGAGGAGT 59.962 55.000 0.00 0.00 0.00 3.85
3636 12505 0.609957 CCATGGTCAGCTCTTGCCAA 60.610 55.000 2.57 0.00 40.80 4.52
3950 12820 1.968017 GGCTGTGCAGTGCAAGCTA 60.968 57.895 32.14 17.19 41.47 3.32
4121 12991 5.506317 GCTTGTACTGAAACTTGAACTGCAT 60.506 40.000 0.00 0.00 0.00 3.96
4255 13125 1.971167 GAGCGCCATTTGTCCACCA 60.971 57.895 2.29 0.00 0.00 4.17
4280 13150 2.303022 TCATCACCACCAGAAACTCCTC 59.697 50.000 0.00 0.00 0.00 3.71
4533 13403 1.679311 CTGCAGTGTGAGGGGCTTA 59.321 57.895 5.25 0.00 0.00 3.09
4547 13417 1.271597 GGGCTTAGCGATGATCCCATT 60.272 52.381 0.00 0.00 34.01 3.16
4632 13504 2.496817 GGAGTAGGCCACTGAGCG 59.503 66.667 5.01 0.00 37.72 5.03
4649 13521 1.731720 GCGATGGCTTCTGTCTTCTT 58.268 50.000 0.00 0.00 35.83 2.52
4730 13602 1.525197 TGCGAATGAACACTTCGACAC 59.475 47.619 9.40 0.00 46.36 3.67
4878 13757 1.164411 TGGCAAAGATCGCGTTCATT 58.836 45.000 18.67 10.59 0.00 2.57
4890 13769 4.788690 TCGCGTTCATTAAGCATTGAAAA 58.211 34.783 5.77 0.00 33.90 2.29
4965 13844 2.859538 GTGGTGTGTTTTGAATGCAGTG 59.140 45.455 0.00 0.00 0.00 3.66
5008 13887 1.765904 TGCGGATTTGGTGATAGCCTA 59.234 47.619 0.00 0.00 0.00 3.93
5116 13997 0.109272 TGATGTCGTTGAGGCGTCTC 60.109 55.000 10.89 10.89 40.97 3.36
5580 14462 3.491619 CGTCGTGGAGGAATGAGATGAAT 60.492 47.826 0.00 0.00 0.00 2.57
5637 14519 1.203162 TCCAACCAATCCATGCCAAGT 60.203 47.619 0.00 0.00 0.00 3.16
5795 14677 3.062763 CGATTTCTTGTGTCTCTGCACT 58.937 45.455 0.00 0.00 39.89 4.40
6096 14981 2.645567 CGGCTGTATCGATCGCCT 59.354 61.111 22.86 2.52 40.34 5.52
6097 14982 1.873863 CGGCTGTATCGATCGCCTA 59.126 57.895 22.86 1.44 40.34 3.93
6445 15345 0.175073 GAACTCCTGGCGGTATTCGT 59.825 55.000 0.00 0.00 41.72 3.85
6551 15451 4.344865 GAACGCCTCCCAGCCCAA 62.345 66.667 0.00 0.00 0.00 4.12
6687 15587 1.078848 GCAGCGATCCAACCAGAGT 60.079 57.895 0.00 0.00 0.00 3.24
6771 15671 0.465460 GTTGGTGGAGTTGTGGCTCA 60.465 55.000 0.00 0.00 37.24 4.26
7125 16034 1.823295 GGTCTCCATGAGCGCCTTA 59.177 57.895 2.29 0.00 33.25 2.69
7242 16151 2.761195 GCCGAGGATTTTGGGCGAC 61.761 63.158 0.00 0.00 35.59 5.19
7328 16240 2.607038 GCAGCGGAGAAAATTTTTCGGT 60.607 45.455 14.50 11.82 0.00 4.69
7338 16250 4.365899 AAATTTTTCGGTAGGATTCGGC 57.634 40.909 0.00 0.00 0.00 5.54
7430 16346 0.614697 TGAGGATGGCGTGAGGAAGA 60.615 55.000 0.00 0.00 0.00 2.87
7445 16365 1.178276 GAAGAGGGTGAGCGAGAGAA 58.822 55.000 0.00 0.00 0.00 2.87
7624 16565 3.617735 TCACGCGGTGGTGCCTTA 61.618 61.111 12.47 0.00 37.83 2.69
7654 16595 2.108157 GACACCGTGCCACAGTCA 59.892 61.111 0.00 0.00 0.00 3.41
7745 16689 1.515521 GCCTACCAACACCACACAGC 61.516 60.000 0.00 0.00 0.00 4.40
7899 16843 1.087771 GGGGTATCGCCGAACAACAG 61.088 60.000 0.00 0.00 38.44 3.16
7903 16847 2.277084 GTATCGCCGAACAACAGGAAT 58.723 47.619 0.00 0.00 0.00 3.01
7955 16899 2.430382 ATTCAACGCGACGGTGGAGT 62.430 55.000 15.93 0.00 45.36 3.85
8039 16983 0.941542 CTTCTTCGTTGTCGGGCAAA 59.058 50.000 0.00 0.00 39.03 3.68
8200 17147 9.814899 AGTTGCATATACTCTCTATATTCATGC 57.185 33.333 0.00 0.00 0.00 4.06
8251 17234 3.244181 TGTGATATGCATGTATCCGCAGT 60.244 43.478 10.16 0.00 42.37 4.40
8315 17298 1.070134 GGACTACGAATGGCATGGCTA 59.930 52.381 21.08 7.33 0.00 3.93
8445 17727 5.539582 TTATCGGTGTGATAACTTGCAAC 57.460 39.130 0.00 0.00 43.10 4.17
8470 17753 9.799106 ACTGATTTCTCCTTCAGAAGATTTTTA 57.201 29.630 12.14 0.00 42.37 1.52
8585 17869 8.229811 TCGAATAAACAATGATGTCAACTGAAG 58.770 33.333 0.00 0.00 39.40 3.02
8602 18116 5.953571 ACTGAAGGTCCAAATCCTTAAACT 58.046 37.500 0.00 0.00 44.19 2.66
8627 18142 8.603983 TGTTTTGTTAGTATTTTCACGTTGAC 57.396 30.769 0.00 0.00 0.00 3.18
8770 18301 3.379372 GTGGTACAAGCAGCATGATTCAT 59.621 43.478 4.23 0.00 44.15 2.57
8773 18304 5.297527 TGGTACAAGCAGCATGATTCATTAG 59.702 40.000 4.23 0.00 44.15 1.73
8780 18311 5.762218 AGCAGCATGATTCATTAGACTTACC 59.238 40.000 0.00 0.00 39.69 2.85
8781 18312 5.049129 GCAGCATGATTCATTAGACTTACCC 60.049 44.000 0.00 0.00 39.69 3.69
8782 18313 5.471456 CAGCATGATTCATTAGACTTACCCC 59.529 44.000 0.00 0.00 39.69 4.95
8894 18587 3.920446 ACCCTTGTGTGTTGTTTTGTTC 58.080 40.909 0.00 0.00 0.00 3.18
8909 18602 7.234661 TGTTTTGTTCCAGTTTTAACCTCTT 57.765 32.000 0.00 0.00 0.00 2.85
8916 18609 8.248253 TGTTCCAGTTTTAACCTCTTTCTTTTC 58.752 33.333 0.00 0.00 0.00 2.29
8938 18631 3.493303 GGCCCCCTTCAGCCTAGG 61.493 72.222 3.67 3.67 46.14 3.02
8943 18636 1.306997 CCCTTCAGCCTAGGACCCA 60.307 63.158 14.75 0.00 34.56 4.51
8952 18645 3.395941 CAGCCTAGGACCCAAAATCCTAT 59.604 47.826 14.75 0.00 45.72 2.57
8956 18649 3.577805 AGGACCCAAAATCCTATTCGG 57.422 47.619 0.00 0.00 45.18 4.30
8957 18650 3.120108 AGGACCCAAAATCCTATTCGGA 58.880 45.455 0.00 0.00 45.18 4.55
8993 18686 4.947388 GGTTATAGGACAATCTGCAAACCA 59.053 41.667 4.13 0.00 0.00 3.67
8994 18687 5.417580 GGTTATAGGACAATCTGCAAACCAA 59.582 40.000 4.13 0.00 0.00 3.67
9001 18694 0.030638 ATCTGCAAACCAACGCACAC 59.969 50.000 0.00 0.00 33.75 3.82
9013 18706 2.965783 GCACACCTCTCTCGCTCA 59.034 61.111 0.00 0.00 0.00 4.26
9016 18709 0.805322 CACACCTCTCTCGCTCATGC 60.805 60.000 0.00 0.00 0.00 4.06
9032 18725 2.025981 TCATGCACTCTGCCCATTAACT 60.026 45.455 0.00 0.00 44.23 2.24
9066 18760 1.070175 CCACACAACGCTAGGTTTTCG 60.070 52.381 0.00 0.00 36.49 3.46
9067 18761 1.595794 CACACAACGCTAGGTTTTCGT 59.404 47.619 0.00 0.00 36.49 3.85
9068 18762 1.595794 ACACAACGCTAGGTTTTCGTG 59.404 47.619 0.00 2.44 36.49 4.35
9071 18765 2.132762 CAACGCTAGGTTTTCGTGAGT 58.867 47.619 0.00 0.00 36.49 3.41
9087 18781 3.959975 GTGCGCGCCAGGTTTTCA 61.960 61.111 30.77 2.53 0.00 2.69
9088 18782 3.959975 TGCGCGCCAGGTTTTCAC 61.960 61.111 30.77 0.00 0.00 3.18
9095 18789 1.573829 GCCAGGTTTTCACGATCGCA 61.574 55.000 16.60 0.00 0.00 5.10
9102 18796 1.225855 TTTCACGATCGCAGTTTGCT 58.774 45.000 16.60 0.00 42.25 3.91
9137 18835 3.774216 GGATCTAGAGGATTCCCCATCTG 59.226 52.174 0.00 0.00 37.41 2.90
9155 18853 6.393171 CCATCTGGGTTTTCTTTCTGATTTC 58.607 40.000 0.00 0.00 0.00 2.17
9156 18854 6.393171 CATCTGGGTTTTCTTTCTGATTTCC 58.607 40.000 0.00 0.00 0.00 3.13
9157 18855 4.832823 TCTGGGTTTTCTTTCTGATTTCCC 59.167 41.667 0.00 0.00 0.00 3.97
9158 18856 3.901222 TGGGTTTTCTTTCTGATTTCCCC 59.099 43.478 0.00 0.00 31.60 4.81
9221 18934 2.691011 TCCGTTTCCCCTTTTTGTCTTG 59.309 45.455 0.00 0.00 0.00 3.02
9255 18969 9.995003 AAATCACAAAAGGTTATCAAATTAGCA 57.005 25.926 0.00 0.00 0.00 3.49
9258 18972 9.255304 TCACAAAAGGTTATCAAATTAGCAAAC 57.745 29.630 0.00 0.00 0.00 2.93
9312 19028 4.607235 CACGAAGTTTTCTTGAATACGTGC 59.393 41.667 0.00 0.00 41.61 5.34
9321 19037 4.768145 TCTTGAATACGTGCACTTTTTCG 58.232 39.130 16.19 2.55 0.00 3.46
9322 19038 4.508492 TCTTGAATACGTGCACTTTTTCGA 59.492 37.500 16.19 14.46 0.00 3.71
9365 19081 6.091169 AGTTCGTCAACTTTTTCAAACTCGTA 59.909 34.615 0.00 0.00 40.16 3.43
9366 19082 6.592798 TCGTCAACTTTTTCAAACTCGTAT 57.407 33.333 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 1929 4.039973 TGAATAGGCTAACCCTGGTATTCG 59.960 45.833 0.00 0.00 45.91 3.34
115 1991 7.761249 AGGCAATAGAGATGTTTAAAATGTTGC 59.239 33.333 0.00 0.00 37.07 4.17
195 2074 7.939039 TCTTGTGAAAACAATCTTCATCCTAGT 59.061 33.333 0.00 0.00 35.36 2.57
255 2142 4.831779 CGATCAACGTTTTTCAGTTCGTAC 59.168 41.667 0.00 0.00 35.49 3.67
290 2177 2.130193 TCCCAATGGAGAGAAGGATGG 58.870 52.381 0.00 0.00 35.03 3.51
382 2700 3.236816 CCAACGTTTGCATGATCACTTC 58.763 45.455 0.00 0.00 0.00 3.01
529 2857 1.671054 CCGGTCACTGTCGCCAAAT 60.671 57.895 0.00 0.00 0.00 2.32
648 2976 5.075493 AGAAAAGGCAGAACATCAGTCAAT 58.925 37.500 0.00 0.00 0.00 2.57
762 5119 3.851051 GCTTGAGCTAGCTGGAGTT 57.149 52.632 24.99 0.00 38.15 3.01
787 5152 0.179065 TGGATGAGCGATCAAGCCAG 60.179 55.000 20.44 0.00 38.01 4.85
788 5153 0.462581 GTGGATGAGCGATCAAGCCA 60.463 55.000 20.44 20.44 38.01 4.75
789 5154 1.162800 GGTGGATGAGCGATCAAGCC 61.163 60.000 7.76 13.19 38.01 4.35
790 5155 2.315246 GGTGGATGAGCGATCAAGC 58.685 57.895 7.76 2.52 31.91 4.01
886 5259 8.808529 GTTTATATATACATGTAGGAAGCTGCG 58.191 37.037 11.91 0.00 0.00 5.18
935 8827 0.548031 GCCAGGTGAGGATGGAATGA 59.452 55.000 0.00 0.00 39.02 2.57
993 8887 1.070758 GAGGAAATCGCCATGGCTAGA 59.929 52.381 33.07 24.09 39.32 2.43
1066 8994 1.180029 GTGATGCTTTGTGCCTGGAT 58.820 50.000 0.00 0.00 42.00 3.41
1132 9100 9.053840 AGAAAATGCATGTAGAACATAGATGAG 57.946 33.333 0.00 0.00 36.53 2.90
1331 9328 1.298157 GCCAGTGCAGCGTCATGTTA 61.298 55.000 0.00 0.00 37.47 2.41
1400 9397 2.434185 TGAATCGGGCACTGCGTC 60.434 61.111 0.00 0.00 32.53 5.19
1421 9418 0.034380 TGTAGACGTAGCTCTGGCCT 60.034 55.000 3.32 0.00 39.73 5.19
1508 9505 0.966179 TGACGATGGCGCCATATACT 59.034 50.000 40.56 21.65 42.48 2.12
1578 9575 0.895530 TCGCCGAAGAGAACTGGAAT 59.104 50.000 0.00 0.00 0.00 3.01
1714 9711 1.514014 CGCAATGTACCTTTGGCGC 60.514 57.895 0.00 0.00 0.00 6.53
1803 10605 3.566742 GTGTCTGCAATGCATCATGGATA 59.433 43.478 8.91 0.00 38.13 2.59
1812 10618 1.020437 TTGAACGTGTCTGCAATGCA 58.980 45.000 7.99 7.99 36.92 3.96
1813 10619 1.780860 GTTTGAACGTGTCTGCAATGC 59.219 47.619 0.00 0.00 0.00 3.56
1946 10752 3.249799 CAGTGAACGGCTTGACATAAACA 59.750 43.478 0.00 0.00 0.00 2.83
2273 11101 2.813908 GATCGGGGCGTGACACAC 60.814 66.667 6.37 0.00 0.00 3.82
2314 11143 3.715834 CCTCATCCCCTTTCTCTCATCTT 59.284 47.826 0.00 0.00 0.00 2.40
2353 11184 1.543802 CCAGTTTCTCTCTCGCTCACT 59.456 52.381 0.00 0.00 0.00 3.41
2569 11412 4.587684 AGGAAGAAGTACGTTCTCAAGGAA 59.412 41.667 0.00 0.00 45.44 3.36
2732 11582 1.475403 CAGTGGAGATACTGGACCGT 58.525 55.000 0.00 0.00 43.35 4.83
2960 11811 0.827925 AGAAGTCTGTGGTGAGCCGA 60.828 55.000 0.00 0.00 37.67 5.54
2999 11850 1.549170 GTCGGGGAGCAAGTTCTTCTA 59.451 52.381 0.00 0.00 0.00 2.10
3080 11931 2.627699 TGGTCCTTGCATCAGGAAAAAC 59.372 45.455 8.75 0.00 45.03 2.43
3081 11932 2.892852 CTGGTCCTTGCATCAGGAAAAA 59.107 45.455 8.75 0.00 45.03 1.94
3537 12406 0.944386 GCTTCACCAAGTTCGCTCAA 59.056 50.000 0.00 0.00 31.45 3.02
3920 12790 0.393402 GCACAGCCCAGATGATGACA 60.393 55.000 0.00 0.00 0.00 3.58
3950 12820 2.562912 CGCAAGAACGGCTGCAAT 59.437 55.556 0.50 0.00 43.02 3.56
4121 12991 0.320374 AATGTCGAAGCTTGTCGGGA 59.680 50.000 2.10 0.00 41.43 5.14
4255 13125 2.376518 AGTTTCTGGTGGTGATGATGGT 59.623 45.455 0.00 0.00 0.00 3.55
4280 13150 3.235195 CAGAAACTCTCAACGTACGAGG 58.765 50.000 24.41 13.27 0.00 4.63
4383 13253 2.810012 CTCGATCGAGACGGACGCA 61.810 63.158 36.13 2.29 44.53 5.24
4533 13403 1.162181 CGCACAATGGGATCATCGCT 61.162 55.000 3.00 0.00 32.24 4.93
4547 13417 1.644372 CGTAAGTTTGTGCCGCACA 59.356 52.632 22.32 22.32 43.02 4.57
4632 13504 5.337578 ACTCTAAGAAGACAGAAGCCATC 57.662 43.478 0.00 0.00 0.00 3.51
4649 13521 3.807538 GCGTGGCGACGGACTCTA 61.808 66.667 22.85 0.00 46.20 2.43
4710 13582 1.525197 GTGTCGAAGTGTTCATTCGCA 59.475 47.619 3.35 2.95 46.93 5.10
4730 13602 1.014352 GCACCAGTTATACGCCAAGG 58.986 55.000 0.00 0.00 0.00 3.61
4878 13757 3.652274 GCCTGCAACTTTTCAATGCTTA 58.348 40.909 0.00 0.00 40.66 3.09
4965 13844 1.521423 CGTGAAGAGGACGAACACAAC 59.479 52.381 0.00 0.00 39.21 3.32
5008 13887 2.185350 CAAGCTCGATCTGCGGGT 59.815 61.111 0.00 0.00 44.18 5.28
5116 13997 1.278238 GGCGGTTCTGTGTCGATTAG 58.722 55.000 0.00 0.00 0.00 1.73
5401 14282 0.447406 CAAAGTCGCGCATTCCATCA 59.553 50.000 8.75 0.00 0.00 3.07
5580 14462 3.141398 GACATGTCACTGGCAAGAGAAA 58.859 45.455 21.07 0.00 0.00 2.52
5795 14677 1.583495 ATCCTTCGTCGAGCGTGTCA 61.583 55.000 0.00 0.00 42.13 3.58
6001 14886 0.244994 GAGGTGCTCACTGATGACGT 59.755 55.000 0.00 0.00 0.00 4.34
6096 14981 0.685097 ACGGGCTCTGCTTCAAGTTA 59.315 50.000 0.00 0.00 0.00 2.24
6097 14982 0.179018 AACGGGCTCTGCTTCAAGTT 60.179 50.000 0.00 0.00 0.00 2.66
6152 15037 1.136305 GCCAACAGCCTGACGACTATA 59.864 52.381 0.00 0.00 34.35 1.31
6551 15451 0.534877 TCGTCAAACACATGCTGGCT 60.535 50.000 0.00 0.00 0.00 4.75
7125 16034 2.534019 CGACAACACCAGCACGCTT 61.534 57.895 0.00 0.00 0.00 4.68
7170 16079 1.448985 CGTCCAAACCATCGGTTCAT 58.551 50.000 0.00 0.00 46.20 2.57
7228 16137 2.267045 GCAAGTCGCCCAAAATCCT 58.733 52.632 0.00 0.00 32.94 3.24
7328 16240 0.827925 ATCAGAGCCGCCGAATCCTA 60.828 55.000 0.00 0.00 0.00 2.94
7338 16250 3.063997 GTGACATTTGGTAATCAGAGCCG 59.936 47.826 0.00 0.00 0.00 5.52
7430 16346 1.694696 AGTTTTTCTCTCGCTCACCCT 59.305 47.619 0.00 0.00 0.00 4.34
7553 16490 1.067846 CGTGAGCCAGCTGTAAGTGTA 60.068 52.381 13.81 0.00 35.30 2.90
7602 16543 4.969196 CACCACCGCGTGACTGCT 62.969 66.667 4.92 0.00 35.23 4.24
7624 16565 2.203015 GTGTCACCACGGCAGTGT 60.203 61.111 15.94 1.48 46.56 3.55
7654 16595 0.759346 AGAAGAACCGCTTGTCCACT 59.241 50.000 0.00 0.00 36.83 4.00
7745 16689 4.481112 GTTGATGGCCGCCGCAAG 62.481 66.667 15.53 0.00 36.38 4.01
7899 16843 4.041762 TCCCGGTGGCCACATTCC 62.042 66.667 35.78 18.83 0.00 3.01
7955 16899 0.320683 CTCGTGTCCTGCATCACCAA 60.321 55.000 9.94 1.19 0.00 3.67
8039 16983 0.250597 GGGTCGTAGTTGCCAAACCT 60.251 55.000 0.00 0.00 36.94 3.50
8113 17057 3.443045 CCACCAGCCGGCACATTC 61.443 66.667 31.54 0.00 34.57 2.67
8114 17058 3.286694 ATCCACCAGCCGGCACATT 62.287 57.895 31.54 4.11 34.57 2.71
8115 17059 3.731728 ATCCACCAGCCGGCACAT 61.732 61.111 31.54 10.27 34.57 3.21
8116 17060 4.720902 CATCCACCAGCCGGCACA 62.721 66.667 31.54 5.24 34.57 4.57
8200 17147 2.095059 GCACAGGCTAAACATCCAGTTG 60.095 50.000 0.00 0.00 37.53 3.16
8251 17234 2.830321 TGGCAATGCATGAACCATACAA 59.170 40.909 7.79 0.00 0.00 2.41
8315 17298 0.752376 GTAGGCTCCCGTCTAGCACT 60.752 60.000 0.00 0.00 41.93 4.40
8434 17716 6.716628 TGAAGGAGAAATCAGTTGCAAGTTAT 59.283 34.615 3.38 0.00 0.00 1.89
8585 17869 6.578944 ACAAAACAGTTTAAGGATTTGGACC 58.421 36.000 0.00 0.00 33.31 4.46
8602 18116 8.452534 AGTCAACGTGAAAATACTAACAAAACA 58.547 29.630 0.00 0.00 0.00 2.83
8650 18176 9.507280 CACTTATTGCTAATAACAAATGGAGTG 57.493 33.333 0.00 0.00 30.58 3.51
8683 18209 7.971183 ACAAGTCTTTTGCCTTGTTTAAAAA 57.029 28.000 0.00 0.00 46.82 1.94
8692 18223 6.980397 CACTTATTTGACAAGTCTTTTGCCTT 59.020 34.615 1.53 0.00 33.99 4.35
8742 18273 1.140852 TGCTGCTTGTACCACTGAAGT 59.859 47.619 0.00 0.00 0.00 3.01
8773 18304 8.186163 CCAATTTATTTTTACTCGGGGTAAGTC 58.814 37.037 0.09 0.00 40.87 3.01
8780 18311 9.524106 GATAAACCCAATTTATTTTTACTCGGG 57.476 33.333 0.00 0.00 42.47 5.14
8894 18587 7.147897 ACAGGAAAAGAAAGAGGTTAAAACTGG 60.148 37.037 0.00 0.00 0.00 4.00
8909 18602 1.155155 GGGGGCCACAGGAAAAGAA 59.845 57.895 7.65 0.00 0.00 2.52
8916 18609 4.748144 GCTGAAGGGGGCCACAGG 62.748 72.222 9.35 0.00 33.42 4.00
8952 18645 4.157120 GGCGCTAAGGGCTCCGAA 62.157 66.667 7.64 0.00 41.33 4.30
8956 18649 2.379030 ATAACCGGCGCTAAGGGCTC 62.379 60.000 7.64 0.00 41.33 4.70
8957 18650 1.117142 TATAACCGGCGCTAAGGGCT 61.117 55.000 7.64 3.53 41.33 5.19
8965 18658 1.145803 GATTGTCCTATAACCGGCGC 58.854 55.000 0.00 0.00 0.00 6.53
8970 18663 4.947388 TGGTTTGCAGATTGTCCTATAACC 59.053 41.667 0.00 0.00 34.54 2.85
8993 18686 2.049063 GCGAGAGAGGTGTGCGTT 60.049 61.111 0.00 0.00 0.00 4.84
8994 18687 2.983930 GAGCGAGAGAGGTGTGCGT 61.984 63.158 0.00 0.00 0.00 5.24
9001 18694 0.248990 GAGTGCATGAGCGAGAGAGG 60.249 60.000 0.00 0.00 46.23 3.69
9038 18732 1.229428 AGCGTTGTGTGGATGTGAAG 58.771 50.000 0.00 0.00 0.00 3.02
9053 18747 1.779569 CACTCACGAAAACCTAGCGT 58.220 50.000 0.00 0.00 39.04 5.07
9067 18761 4.927782 AAACCTGGCGCGCACTCA 62.928 61.111 34.42 20.64 0.00 3.41
9068 18762 3.595108 GAAAACCTGGCGCGCACTC 62.595 63.158 34.42 16.64 0.00 3.51
9071 18765 3.959975 GTGAAAACCTGGCGCGCA 61.960 61.111 34.42 17.93 0.00 6.09
9076 18770 1.134694 GCGATCGTGAAAACCTGGC 59.865 57.895 17.81 0.00 0.00 4.85
9109 18803 6.402442 TGGGGAATCCTCTAGATCCTAAAAT 58.598 40.000 0.00 0.00 32.47 1.82
9114 18808 3.672139 AGATGGGGAATCCTCTAGATCCT 59.328 47.826 0.00 0.00 35.72 3.24
9137 18835 3.260884 GGGGGAAATCAGAAAGAAAACCC 59.739 47.826 0.00 0.00 35.98 4.11
9200 18913 2.691011 CAAGACAAAAAGGGGAAACGGA 59.309 45.455 0.00 0.00 0.00 4.69
9203 18916 6.811253 AAAAACAAGACAAAAAGGGGAAAC 57.189 33.333 0.00 0.00 0.00 2.78
9291 19007 4.607235 GTGCACGTATTCAAGAAAACTTCG 59.393 41.667 0.00 0.00 34.02 3.79
9295 19011 6.806120 AAAAGTGCACGTATTCAAGAAAAC 57.194 33.333 12.01 0.00 0.00 2.43
9302 19018 4.797693 TTCGAAAAAGTGCACGTATTCA 57.202 36.364 22.42 12.34 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.