Multiple sequence alignment - TraesCS2D01G208900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G208900 chr2D 100.000 3959 0 0 1 3959 164283822 164287780 0.000000e+00 7312
1 TraesCS2D01G208900 chr2D 87.108 830 93 13 1 819 354777218 354778044 0.000000e+00 928
2 TraesCS2D01G208900 chr2B 92.521 1337 63 20 473 1775 232891265 232889932 0.000000e+00 1881
3 TraesCS2D01G208900 chr2B 90.802 761 60 5 2229 2989 232889485 232888735 0.000000e+00 1009
4 TraesCS2D01G208900 chr2B 92.757 428 24 1 1776 2203 232889896 232889476 2.620000e-171 612
5 TraesCS2D01G208900 chr2B 90.526 380 34 2 2989 3366 232888061 232887682 5.910000e-138 501
6 TraesCS2D01G208900 chr2A 90.529 908 52 17 898 1771 187311094 187310187 0.000000e+00 1170
7 TraesCS2D01G208900 chr2A 91.304 805 53 12 1984 2775 187309900 187309100 0.000000e+00 1083
8 TraesCS2D01G208900 chr2A 86.825 926 89 14 1370 2270 186982542 186981625 0.000000e+00 1003
9 TraesCS2D01G208900 chr2A 87.197 578 44 15 824 1373 187050081 187049506 7.220000e-177 630
10 TraesCS2D01G208900 chr2A 89.805 461 39 3 2271 2731 186967908 186967456 5.700000e-163 584
11 TraesCS2D01G208900 chr2A 91.761 352 21 3 3131 3481 187307747 187307403 2.140000e-132 483
12 TraesCS2D01G208900 chr2A 84.277 477 42 8 824 1287 187205986 187206442 6.080000e-118 435
13 TraesCS2D01G208900 chr2A 90.578 329 26 2 3119 3447 186587670 186587347 7.860000e-117 431
14 TraesCS2D01G208900 chr2A 83.956 455 53 2 1319 1771 187247878 187248314 6.120000e-113 418
15 TraesCS2D01G208900 chr2A 86.842 380 41 4 2724 3094 186681428 186681049 2.200000e-112 416
16 TraesCS2D01G208900 chr2A 91.696 289 16 5 3670 3958 187307417 187307137 1.030000e-105 394
17 TraesCS2D01G208900 chr2A 90.311 289 28 0 3670 3958 186491348 186491060 2.890000e-101 379
18 TraesCS2D01G208900 chr2A 93.827 243 12 3 2821 3060 187308968 187308726 2.910000e-96 363
19 TraesCS2D01G208900 chr2A 92.188 192 8 5 1788 1977 187310125 187309939 8.440000e-67 265
20 TraesCS2D01G208900 chr2A 96.000 75 3 0 824 898 187318283 187318209 5.370000e-24 122
21 TraesCS2D01G208900 chr1A 87.500 832 88 12 1 820 221700761 221699934 0.000000e+00 946
22 TraesCS2D01G208900 chr1A 89.000 200 17 4 3467 3666 30881869 30882063 3.950000e-60 243
23 TraesCS2D01G208900 chr6D 87.395 833 89 12 1 820 126443234 126444063 0.000000e+00 942
24 TraesCS2D01G208900 chr3D 87.334 829 95 7 1 820 610533371 610534198 0.000000e+00 941
25 TraesCS2D01G208900 chr3B 87.244 831 93 8 1 820 803550289 803551117 0.000000e+00 935
26 TraesCS2D01G208900 chr3B 87.139 832 92 10 1 820 803552320 803553148 0.000000e+00 929
27 TraesCS2D01G208900 chr3B 91.444 187 14 2 3484 3669 631614486 631614301 5.080000e-64 255
28 TraesCS2D01G208900 chr1D 87.394 825 91 10 7 820 475123880 475123058 0.000000e+00 935
29 TraesCS2D01G208900 chr1D 91.803 183 13 2 3484 3666 192870640 192870820 1.830000e-63 254
30 TraesCS2D01G208900 chr7A 87.008 839 95 11 1 827 34186459 34187295 0.000000e+00 933
31 TraesCS2D01G208900 chr7A 91.803 183 13 2 3484 3666 367001508 367001688 1.830000e-63 254
32 TraesCS2D01G208900 chr7B 87.124 831 95 9 1 820 707736901 707737730 0.000000e+00 931
33 TraesCS2D01G208900 chr7B 92.350 183 12 2 3483 3664 536010435 536010254 3.920000e-65 259
34 TraesCS2D01G208900 chr6B 91.935 186 14 1 3479 3664 678111170 678111354 3.920000e-65 259
35 TraesCS2D01G208900 chr4D 91.803 183 13 1 3484 3666 471203064 471203244 1.830000e-63 254
36 TraesCS2D01G208900 chr4D 89.947 189 19 0 3481 3669 108207795 108207607 1.100000e-60 244
37 TraesCS2D01G208900 chr1B 90.217 184 17 1 3484 3666 453355205 453355388 5.110000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G208900 chr2D 164283822 164287780 3958 False 7312.000000 7312 100.000000 1 3959 1 chr2D.!!$F1 3958
1 TraesCS2D01G208900 chr2D 354777218 354778044 826 False 928.000000 928 87.108000 1 819 1 chr2D.!!$F2 818
2 TraesCS2D01G208900 chr2B 232887682 232891265 3583 True 1000.750000 1881 91.651500 473 3366 4 chr2B.!!$R1 2893
3 TraesCS2D01G208900 chr2A 186981625 186982542 917 True 1003.000000 1003 86.825000 1370 2270 1 chr2A.!!$R5 900
4 TraesCS2D01G208900 chr2A 187049506 187050081 575 True 630.000000 630 87.197000 824 1373 1 chr2A.!!$R6 549
5 TraesCS2D01G208900 chr2A 187307137 187311094 3957 True 626.333333 1170 91.884167 898 3958 6 chr2A.!!$R8 3060
6 TraesCS2D01G208900 chr1A 221699934 221700761 827 True 946.000000 946 87.500000 1 820 1 chr1A.!!$R1 819
7 TraesCS2D01G208900 chr6D 126443234 126444063 829 False 942.000000 942 87.395000 1 820 1 chr6D.!!$F1 819
8 TraesCS2D01G208900 chr3D 610533371 610534198 827 False 941.000000 941 87.334000 1 820 1 chr3D.!!$F1 819
9 TraesCS2D01G208900 chr3B 803550289 803553148 2859 False 932.000000 935 87.191500 1 820 2 chr3B.!!$F1 819
10 TraesCS2D01G208900 chr1D 475123058 475123880 822 True 935.000000 935 87.394000 7 820 1 chr1D.!!$R1 813
11 TraesCS2D01G208900 chr7A 34186459 34187295 836 False 933.000000 933 87.008000 1 827 1 chr7A.!!$F1 826
12 TraesCS2D01G208900 chr7B 707736901 707737730 829 False 931.000000 931 87.124000 1 820 1 chr7B.!!$F1 819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 237 0.108520 GGGCGTTGAACGGATACTCA 60.109 55.0 20.01 0.0 42.82 3.41 F
1941 4081 0.032267 GGGGAGCTAGTATGTCGCAC 59.968 60.0 0.00 0.0 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2169 4345 0.323087 GGGGCTACCGATGGTTTTGT 60.323 55.0 0.0 0.0 37.09 2.83 R
3821 7760 0.041312 CGGCAACAACGAAACCTCTG 60.041 55.0 0.0 0.0 0.00 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.355108 GCTCTGGTGGTCATACATGTGT 60.355 50.000 9.11 0.00 0.00 3.72
69 71 5.879777 TGAGACAACTGTGAATTTGACTCAA 59.120 36.000 12.06 0.00 45.26 3.02
80 82 7.171508 TGTGAATTTGACTCAAGATGACTACAC 59.828 37.037 0.00 0.00 0.00 2.90
87 89 1.068474 AAGATGACTACACGCAACGC 58.932 50.000 0.00 0.00 0.00 4.84
162 165 6.813649 TGAGTTCAGATAACTCTTATGTGTGC 59.186 38.462 16.40 0.00 45.13 4.57
201 204 2.433868 TCACTTTCACGTAGGTCAGC 57.566 50.000 0.00 0.00 0.00 4.26
202 205 1.684450 TCACTTTCACGTAGGTCAGCA 59.316 47.619 0.00 0.00 0.00 4.41
217 226 3.053291 GCAATCGGTGGGCGTTGA 61.053 61.111 0.00 0.00 0.00 3.18
228 237 0.108520 GGGCGTTGAACGGATACTCA 60.109 55.000 20.01 0.00 42.82 3.41
229 238 1.673626 GGGCGTTGAACGGATACTCAA 60.674 52.381 20.01 0.00 42.82 3.02
290 300 2.153913 GCTCGAGCGTTGATTGTGT 58.846 52.632 23.61 0.00 0.00 3.72
300 311 5.591099 AGCGTTGATTGTGTTCAAGAAAAT 58.409 33.333 0.00 0.00 36.34 1.82
328 339 0.249911 ACAAGTTGCAGTCGGAGTCC 60.250 55.000 1.81 0.00 0.00 3.85
333 344 2.512515 GCAGTCGGAGTCCCATGC 60.513 66.667 2.80 7.84 0.00 4.06
335 346 1.448540 CAGTCGGAGTCCCATGCAC 60.449 63.158 2.80 0.00 0.00 4.57
362 373 1.475403 AGTAGCAGCGGTACTCATGT 58.525 50.000 12.51 0.00 42.16 3.21
399 410 6.009589 TCCAATGTACATGGAAGTTTGACAT 58.990 36.000 18.83 0.00 43.84 3.06
414 425 6.173339 AGTTTGACATATGGACGAATTCAGT 58.827 36.000 7.80 4.50 0.00 3.41
418 429 5.084818 ACATATGGACGAATTCAGTGTGA 57.915 39.130 7.80 0.00 0.00 3.58
432 443 5.598416 TCAGTGTGATGGAGAATATTCGT 57.402 39.130 9.78 0.00 0.00 3.85
440 451 5.128663 TGATGGAGAATATTCGTCAAGGTGA 59.871 40.000 9.78 0.00 0.00 4.02
452 463 5.421277 TCGTCAAGGTGAAGTTTGTTAGAA 58.579 37.500 0.00 0.00 0.00 2.10
559 570 3.406512 AGGACACTTGTATCCTAGGCT 57.593 47.619 2.96 0.00 43.85 4.58
561 572 4.104831 AGGACACTTGTATCCTAGGCTTT 58.895 43.478 2.96 0.00 43.85 3.51
581 2623 8.329502 AGGCTTTTTATATATAGTGGGGCTAAG 58.670 37.037 10.09 0.00 32.72 2.18
709 2753 2.085320 GGAGAAGCGTCTGTAGTCAGA 58.915 52.381 6.97 0.00 46.85 3.27
723 2769 0.686769 GTCAGACCCCGGGATGTAGT 60.687 60.000 26.32 11.32 0.00 2.73
738 2784 4.038763 GGATGTAGTCATACCGGTGAATCA 59.961 45.833 19.93 7.17 34.06 2.57
770 2817 0.599060 TCGGTGTCGTGCTTCATGTA 59.401 50.000 0.00 0.00 37.69 2.29
775 2822 3.188460 GGTGTCGTGCTTCATGTAATTGT 59.812 43.478 0.00 0.00 0.00 2.71
868 2917 5.221067 GCTGTGTCGTCTGATTATCCTAAGA 60.221 44.000 0.00 0.00 0.00 2.10
893 2943 9.629878 GAGTATATGCTAGCTAGGGTTCTTATA 57.370 37.037 22.10 13.00 0.00 0.98
934 2987 2.622903 TTTCGATGCTAGCCGTCCCG 62.623 60.000 13.29 8.45 0.00 5.14
936 2989 2.336809 GATGCTAGCCGTCCCGAG 59.663 66.667 13.29 0.00 0.00 4.63
965 3018 4.805192 TCTTTTCTCATTTGTGTTGCTTGC 59.195 37.500 0.00 0.00 0.00 4.01
969 3022 3.633525 TCTCATTTGTGTTGCTTGCTCTT 59.366 39.130 0.00 0.00 0.00 2.85
1005 3058 0.322456 AAAGCGAACTAGGCATGGCA 60.322 50.000 22.64 6.63 0.00 4.92
1016 3069 1.887242 GCATGGCATACGGCGAAGA 60.887 57.895 16.62 0.00 46.16 2.87
1023 3076 1.457303 GCATACGGCGAAGATGATCAC 59.543 52.381 16.62 0.00 0.00 3.06
1060 3116 1.404391 CTCAGGAGGTTTGCATCATGC 59.596 52.381 1.35 1.35 45.29 4.06
1090 3146 8.094284 TCATTTTCCTCCTGAGATAATTCTGA 57.906 34.615 0.00 0.00 30.30 3.27
1091 3147 8.209584 TCATTTTCCTCCTGAGATAATTCTGAG 58.790 37.037 0.00 0.00 33.42 3.35
1092 3148 5.543507 TTCCTCCTGAGATAATTCTGAGC 57.456 43.478 0.00 0.00 32.38 4.26
1094 3150 4.832266 TCCTCCTGAGATAATTCTGAGCTC 59.168 45.833 6.82 6.82 32.38 4.09
1096 3152 4.464947 TCCTGAGATAATTCTGAGCTCGA 58.535 43.478 9.64 6.70 32.38 4.04
1098 3154 5.182950 TCCTGAGATAATTCTGAGCTCGATC 59.817 44.000 9.64 5.05 32.38 3.69
1102 3158 5.879237 AGATAATTCTGAGCTCGATCGATC 58.121 41.667 19.78 15.10 0.00 3.69
1104 3160 9.251348 GAGATAATTCTGAGCTCGATCGATCGA 62.251 44.444 39.17 39.17 43.83 3.59
1331 3417 2.313909 TATGCCACACACACACGCG 61.314 57.895 3.53 3.53 0.00 6.01
1670 3760 1.153208 TACGGTTGTGGCGGTGTTT 60.153 52.632 0.00 0.00 0.00 2.83
1774 3864 5.616270 TCTTGTGCCAGAACATACAGTAAA 58.384 37.500 0.00 0.00 0.00 2.01
1893 4033 1.090052 GGCTCATTACGAAAGCGGCT 61.090 55.000 0.00 0.00 43.17 5.52
1941 4081 0.032267 GGGGAGCTAGTATGTCGCAC 59.968 60.000 0.00 0.00 0.00 5.34
2090 4266 1.747355 CCCAAGCTGCCAATAGTGAAG 59.253 52.381 0.00 0.00 0.00 3.02
2169 4345 2.429930 CCGGCCTCCAAAGACACA 59.570 61.111 0.00 0.00 0.00 3.72
2184 4360 3.399330 AGACACACAAAACCATCGGTAG 58.601 45.455 0.00 0.00 33.12 3.18
2201 4423 4.660938 GCCCCCTCAACGCCAGTT 62.661 66.667 0.00 0.00 42.15 3.16
2223 4445 7.287050 GTTGTAAACTGTAATCTAGTTCCCG 57.713 40.000 0.00 0.00 45.32 5.14
2224 4446 5.969423 TGTAAACTGTAATCTAGTTCCCGG 58.031 41.667 0.00 0.00 37.39 5.73
2225 4447 3.538634 AACTGTAATCTAGTTCCCGGC 57.461 47.619 0.00 0.00 33.28 6.13
2226 4448 2.463752 ACTGTAATCTAGTTCCCGGCA 58.536 47.619 0.00 0.00 0.00 5.69
2227 4449 2.431057 ACTGTAATCTAGTTCCCGGCAG 59.569 50.000 0.00 0.00 0.00 4.85
2228 4450 2.693591 CTGTAATCTAGTTCCCGGCAGA 59.306 50.000 0.00 0.00 0.00 4.26
2229 4451 2.429610 TGTAATCTAGTTCCCGGCAGAC 59.570 50.000 0.00 0.00 0.00 3.51
2230 4452 0.460311 AATCTAGTTCCCGGCAGACG 59.540 55.000 0.00 0.00 43.80 4.18
2250 4472 4.269183 ACGGCAAATGAAAGATCCATACA 58.731 39.130 0.00 0.00 0.00 2.29
2376 4598 0.803768 CTGACGCTGTCCATCTTCCG 60.804 60.000 6.30 0.00 0.00 4.30
2479 4701 6.942976 CCAGATTTTGGTTACTACTCCTACA 58.057 40.000 0.00 0.00 42.41 2.74
2480 4702 6.817140 CCAGATTTTGGTTACTACTCCTACAC 59.183 42.308 0.00 0.00 42.41 2.90
2481 4703 7.310485 CCAGATTTTGGTTACTACTCCTACACT 60.310 40.741 0.00 0.00 42.41 3.55
2482 4704 8.746530 CAGATTTTGGTTACTACTCCTACACTA 58.253 37.037 0.00 0.00 0.00 2.74
2483 4705 8.747471 AGATTTTGGTTACTACTCCTACACTAC 58.253 37.037 0.00 0.00 0.00 2.73
2484 4706 6.500684 TTTGGTTACTACTCCTACACTACG 57.499 41.667 0.00 0.00 0.00 3.51
2497 4719 4.341235 CCTACACTACGAAGGATGGAATGA 59.659 45.833 0.00 0.00 31.64 2.57
2533 4755 3.260483 GCTGGTGCTGATCGCGAG 61.260 66.667 16.66 1.42 43.27 5.03
2550 4772 1.935327 GAGCTACAACGGCTCGGACT 61.935 60.000 0.00 0.00 45.01 3.85
2648 4870 4.392166 TACCTGCTCCTCCCGGCA 62.392 66.667 0.00 0.00 36.94 5.69
2656 4878 1.996798 CTCCTCCCGGCATTCTACTA 58.003 55.000 0.00 0.00 0.00 1.82
2693 4915 1.369321 GGAGGCCTGGATGATCGTC 59.631 63.158 12.00 6.36 0.00 4.20
2704 4926 0.522180 ATGATCGTCCTCGTATCGGC 59.478 55.000 0.00 0.00 38.33 5.54
2781 5003 3.451540 ACCCTACAAGGTTAGCTTAGCTC 59.548 47.826 11.09 0.00 36.44 4.09
2784 5006 4.337555 CCTACAAGGTTAGCTTAGCTCGTA 59.662 45.833 11.09 3.79 40.44 3.43
2802 5024 4.006319 TCGTATTGCACAATCATTCCACA 58.994 39.130 0.00 0.00 32.50 4.17
2805 5027 3.646611 TTGCACAATCATTCCACACTG 57.353 42.857 0.00 0.00 0.00 3.66
2820 5042 3.386486 CACACTGGACACGTTAGCTTAA 58.614 45.455 0.00 0.00 0.00 1.85
2974 5294 1.001503 TGATCAAACCCATGGCCCC 59.998 57.895 6.09 0.00 0.00 5.80
3057 6051 0.179161 TTCGTTTTGGTGTTGGTGCG 60.179 50.000 0.00 0.00 0.00 5.34
3127 6122 1.588674 TGATCACGGTTTTTCTGCGT 58.411 45.000 0.00 0.00 0.00 5.24
3129 7067 0.511221 ATCACGGTTTTTCTGCGTCG 59.489 50.000 0.00 0.00 0.00 5.12
3143 7081 2.210961 TGCGTCGTAATTGTTGTTCCA 58.789 42.857 0.00 0.00 0.00 3.53
3148 7086 4.901881 CGTCGTAATTGTTGTTCCACTTTC 59.098 41.667 0.00 0.00 0.00 2.62
3149 7087 5.209977 GTCGTAATTGTTGTTCCACTTTCC 58.790 41.667 0.00 0.00 0.00 3.13
3268 7207 9.567848 GAATTTAAAACTCCGCAATGAAAGATA 57.432 29.630 0.00 0.00 0.00 1.98
3270 7209 4.965119 AAACTCCGCAATGAAAGATACC 57.035 40.909 0.00 0.00 0.00 2.73
3280 7219 6.792250 CGCAATGAAAGATACCGAATGTATTC 59.208 38.462 0.00 0.00 40.31 1.75
3367 7306 9.734620 TCTCAGTTAAAAGAACAAATCAACATG 57.265 29.630 0.00 0.00 0.00 3.21
3368 7307 9.734620 CTCAGTTAAAAGAACAAATCAACATGA 57.265 29.630 0.00 0.00 0.00 3.07
3414 7353 3.057315 GGTGGATCATCAATATTTGGGCG 60.057 47.826 0.00 0.00 0.00 6.13
3457 7396 7.170277 GGACATAAAAACTGGAGTAGGGTAAA 58.830 38.462 0.00 0.00 0.00 2.01
3466 7405 7.086685 ACTGGAGTAGGGTAAATTTTTCTCA 57.913 36.000 0.00 0.00 0.00 3.27
3467 7406 7.699878 ACTGGAGTAGGGTAAATTTTTCTCAT 58.300 34.615 0.00 0.00 0.00 2.90
3468 7407 7.611855 ACTGGAGTAGGGTAAATTTTTCTCATG 59.388 37.037 0.00 0.00 0.00 3.07
3469 7408 7.466804 TGGAGTAGGGTAAATTTTTCTCATGT 58.533 34.615 0.00 0.00 0.00 3.21
3470 7409 7.947890 TGGAGTAGGGTAAATTTTTCTCATGTT 59.052 33.333 0.00 0.00 0.00 2.71
3471 7410 8.803235 GGAGTAGGGTAAATTTTTCTCATGTTT 58.197 33.333 0.00 0.00 0.00 2.83
3472 7411 9.841880 GAGTAGGGTAAATTTTTCTCATGTTTC 57.158 33.333 0.00 0.00 0.00 2.78
3473 7412 8.512138 AGTAGGGTAAATTTTTCTCATGTTTCG 58.488 33.333 0.00 0.00 0.00 3.46
3474 7413 6.687604 AGGGTAAATTTTTCTCATGTTTCGG 58.312 36.000 0.00 0.00 0.00 4.30
3475 7414 6.266786 AGGGTAAATTTTTCTCATGTTTCGGT 59.733 34.615 0.00 0.00 0.00 4.69
3476 7415 6.584942 GGGTAAATTTTTCTCATGTTTCGGTC 59.415 38.462 0.00 0.00 0.00 4.79
3477 7416 7.142680 GGTAAATTTTTCTCATGTTTCGGTCA 58.857 34.615 0.00 0.00 0.00 4.02
3478 7417 7.812669 GGTAAATTTTTCTCATGTTTCGGTCAT 59.187 33.333 0.00 0.00 0.00 3.06
3479 7418 9.834628 GTAAATTTTTCTCATGTTTCGGTCATA 57.165 29.630 0.00 0.00 0.00 2.15
3481 7420 9.573133 AAATTTTTCTCATGTTTCGGTCATATC 57.427 29.630 0.00 0.00 0.00 1.63
3482 7421 7.921786 TTTTTCTCATGTTTCGGTCATATCT 57.078 32.000 0.00 0.00 0.00 1.98
3483 7422 7.921786 TTTTCTCATGTTTCGGTCATATCTT 57.078 32.000 0.00 0.00 0.00 2.40
3484 7423 7.921786 TTTCTCATGTTTCGGTCATATCTTT 57.078 32.000 0.00 0.00 0.00 2.52
3485 7424 7.921786 TTCTCATGTTTCGGTCATATCTTTT 57.078 32.000 0.00 0.00 0.00 2.27
3486 7425 7.921786 TCTCATGTTTCGGTCATATCTTTTT 57.078 32.000 0.00 0.00 0.00 1.94
3536 7475 9.061435 GCATATCATATATTAAAGAAGGAGGGC 57.939 37.037 0.00 0.00 0.00 5.19
3540 7479 8.924511 TCATATATTAAAGAAGGAGGGCAAAG 57.075 34.615 0.00 0.00 0.00 2.77
3541 7480 7.448469 TCATATATTAAAGAAGGAGGGCAAAGC 59.552 37.037 0.00 0.00 0.00 3.51
3542 7481 2.969821 TAAAGAAGGAGGGCAAAGCA 57.030 45.000 0.00 0.00 0.00 3.91
3543 7482 2.315720 AAAGAAGGAGGGCAAAGCAT 57.684 45.000 0.00 0.00 0.00 3.79
3544 7483 1.553706 AAGAAGGAGGGCAAAGCATG 58.446 50.000 0.00 0.00 0.00 4.06
3554 7493 2.649831 CAAAGCATGCCTCCACAGT 58.350 52.632 15.66 0.00 0.00 3.55
3555 7494 0.963962 CAAAGCATGCCTCCACAGTT 59.036 50.000 15.66 0.00 0.00 3.16
3556 7495 2.161855 CAAAGCATGCCTCCACAGTTA 58.838 47.619 15.66 0.00 0.00 2.24
3557 7496 1.826385 AAGCATGCCTCCACAGTTAC 58.174 50.000 15.66 0.00 0.00 2.50
3558 7497 0.692476 AGCATGCCTCCACAGTTACA 59.308 50.000 15.66 0.00 0.00 2.41
3559 7498 1.283029 AGCATGCCTCCACAGTTACAT 59.717 47.619 15.66 0.00 0.00 2.29
3560 7499 2.094675 GCATGCCTCCACAGTTACATT 58.905 47.619 6.36 0.00 0.00 2.71
3561 7500 3.054434 AGCATGCCTCCACAGTTACATTA 60.054 43.478 15.66 0.00 0.00 1.90
3562 7501 3.065371 GCATGCCTCCACAGTTACATTAC 59.935 47.826 6.36 0.00 0.00 1.89
3563 7502 4.260985 CATGCCTCCACAGTTACATTACA 58.739 43.478 0.00 0.00 0.00 2.41
3564 7503 4.359434 TGCCTCCACAGTTACATTACAA 57.641 40.909 0.00 0.00 0.00 2.41
3565 7504 4.323417 TGCCTCCACAGTTACATTACAAG 58.677 43.478 0.00 0.00 0.00 3.16
3566 7505 3.127030 GCCTCCACAGTTACATTACAAGC 59.873 47.826 0.00 0.00 0.00 4.01
3567 7506 3.689649 CCTCCACAGTTACATTACAAGCC 59.310 47.826 0.00 0.00 0.00 4.35
3568 7507 4.565652 CCTCCACAGTTACATTACAAGCCT 60.566 45.833 0.00 0.00 0.00 4.58
3569 7508 4.323417 TCCACAGTTACATTACAAGCCTG 58.677 43.478 0.00 0.00 0.00 4.85
3570 7509 4.072131 CCACAGTTACATTACAAGCCTGT 58.928 43.478 0.00 0.00 39.75 4.00
3571 7510 5.012251 TCCACAGTTACATTACAAGCCTGTA 59.988 40.000 0.00 0.00 36.96 2.74
3572 7511 5.121768 CCACAGTTACATTACAAGCCTGTAC 59.878 44.000 0.00 0.00 37.77 2.90
3573 7512 4.927425 ACAGTTACATTACAAGCCTGTACG 59.073 41.667 0.00 0.00 37.77 3.67
3574 7513 4.328983 CAGTTACATTACAAGCCTGTACGG 59.671 45.833 0.00 0.00 37.77 4.02
3584 7523 3.148340 CCTGTACGGCCTTACAACC 57.852 57.895 21.29 0.00 31.52 3.77
3585 7524 0.392060 CCTGTACGGCCTTACAACCC 60.392 60.000 21.29 0.00 31.52 4.11
3586 7525 0.738412 CTGTACGGCCTTACAACCCG 60.738 60.000 21.29 7.62 46.97 5.28
3589 7528 4.190350 CGGCCTTACAACCCGTAC 57.810 61.111 0.00 0.00 37.36 3.67
3590 7529 1.448365 CGGCCTTACAACCCGTACC 60.448 63.158 0.00 0.00 37.36 3.34
3591 7530 1.078214 GGCCTTACAACCCGTACCC 60.078 63.158 0.00 0.00 0.00 3.69
3592 7531 1.448365 GCCTTACAACCCGTACCCG 60.448 63.158 0.00 0.00 0.00 5.28
3593 7532 1.448365 CCTTACAACCCGTACCCGC 60.448 63.158 0.00 0.00 0.00 6.13
3594 7533 1.593265 CTTACAACCCGTACCCGCT 59.407 57.895 0.00 0.00 0.00 5.52
3595 7534 0.459063 CTTACAACCCGTACCCGCTC 60.459 60.000 0.00 0.00 0.00 5.03
3596 7535 1.887344 TTACAACCCGTACCCGCTCC 61.887 60.000 0.00 0.00 0.00 4.70
3597 7536 3.697747 CAACCCGTACCCGCTCCA 61.698 66.667 0.00 0.00 0.00 3.86
3598 7537 3.698820 AACCCGTACCCGCTCCAC 61.699 66.667 0.00 0.00 0.00 4.02
3599 7538 4.691359 ACCCGTACCCGCTCCACT 62.691 66.667 0.00 0.00 0.00 4.00
3600 7539 3.387947 CCCGTACCCGCTCCACTT 61.388 66.667 0.00 0.00 0.00 3.16
3601 7540 2.053865 CCCGTACCCGCTCCACTTA 61.054 63.158 0.00 0.00 0.00 2.24
3602 7541 1.606885 CCCGTACCCGCTCCACTTAA 61.607 60.000 0.00 0.00 0.00 1.85
3603 7542 0.247185 CCGTACCCGCTCCACTTAAA 59.753 55.000 0.00 0.00 0.00 1.52
3604 7543 1.353076 CGTACCCGCTCCACTTAAAC 58.647 55.000 0.00 0.00 0.00 2.01
3605 7544 1.353076 GTACCCGCTCCACTTAAACG 58.647 55.000 0.00 0.00 0.00 3.60
3606 7545 0.390209 TACCCGCTCCACTTAAACGC 60.390 55.000 0.00 0.00 0.00 4.84
3607 7546 1.669760 CCCGCTCCACTTAAACGCA 60.670 57.895 0.00 0.00 0.00 5.24
3608 7547 1.495951 CCGCTCCACTTAAACGCAC 59.504 57.895 0.00 0.00 0.00 5.34
3609 7548 1.225376 CCGCTCCACTTAAACGCACA 61.225 55.000 0.00 0.00 0.00 4.57
3610 7549 0.110823 CGCTCCACTTAAACGCACAC 60.111 55.000 0.00 0.00 0.00 3.82
3611 7550 0.941542 GCTCCACTTAAACGCACACA 59.058 50.000 0.00 0.00 0.00 3.72
3612 7551 1.535462 GCTCCACTTAAACGCACACAT 59.465 47.619 0.00 0.00 0.00 3.21
3613 7552 2.739913 GCTCCACTTAAACGCACACATA 59.260 45.455 0.00 0.00 0.00 2.29
3614 7553 3.374058 GCTCCACTTAAACGCACACATAT 59.626 43.478 0.00 0.00 0.00 1.78
3615 7554 4.494199 GCTCCACTTAAACGCACACATATC 60.494 45.833 0.00 0.00 0.00 1.63
3616 7555 3.936453 TCCACTTAAACGCACACATATCC 59.064 43.478 0.00 0.00 0.00 2.59
3617 7556 3.938963 CCACTTAAACGCACACATATCCT 59.061 43.478 0.00 0.00 0.00 3.24
3618 7557 5.105269 TCCACTTAAACGCACACATATCCTA 60.105 40.000 0.00 0.00 0.00 2.94
3619 7558 5.006358 CCACTTAAACGCACACATATCCTAC 59.994 44.000 0.00 0.00 0.00 3.18
3620 7559 5.810587 CACTTAAACGCACACATATCCTACT 59.189 40.000 0.00 0.00 0.00 2.57
3621 7560 6.019801 CACTTAAACGCACACATATCCTACTC 60.020 42.308 0.00 0.00 0.00 2.59
3622 7561 3.454371 AACGCACACATATCCTACTCC 57.546 47.619 0.00 0.00 0.00 3.85
3623 7562 2.667470 ACGCACACATATCCTACTCCT 58.333 47.619 0.00 0.00 0.00 3.69
3624 7563 2.623889 ACGCACACATATCCTACTCCTC 59.376 50.000 0.00 0.00 0.00 3.71
3625 7564 2.029828 CGCACACATATCCTACTCCTCC 60.030 54.545 0.00 0.00 0.00 4.30
3626 7565 2.300437 GCACACATATCCTACTCCTCCC 59.700 54.545 0.00 0.00 0.00 4.30
3627 7566 3.850752 CACACATATCCTACTCCTCCCT 58.149 50.000 0.00 0.00 0.00 4.20
3628 7567 4.753217 GCACACATATCCTACTCCTCCCTA 60.753 50.000 0.00 0.00 0.00 3.53
3629 7568 5.394738 CACACATATCCTACTCCTCCCTAA 58.605 45.833 0.00 0.00 0.00 2.69
3630 7569 6.019748 CACACATATCCTACTCCTCCCTAAT 58.980 44.000 0.00 0.00 0.00 1.73
3631 7570 6.153680 CACACATATCCTACTCCTCCCTAATC 59.846 46.154 0.00 0.00 0.00 1.75
3632 7571 6.183361 ACACATATCCTACTCCTCCCTAATCA 60.183 42.308 0.00 0.00 0.00 2.57
3633 7572 6.900186 CACATATCCTACTCCTCCCTAATCAT 59.100 42.308 0.00 0.00 0.00 2.45
3634 7573 7.069331 CACATATCCTACTCCTCCCTAATCATC 59.931 44.444 0.00 0.00 0.00 2.92
3635 7574 4.405756 TCCTACTCCTCCCTAATCATCC 57.594 50.000 0.00 0.00 0.00 3.51
3636 7575 3.732742 TCCTACTCCTCCCTAATCATCCA 59.267 47.826 0.00 0.00 0.00 3.41
3637 7576 3.835395 CCTACTCCTCCCTAATCATCCAC 59.165 52.174 0.00 0.00 0.00 4.02
3638 7577 2.695585 ACTCCTCCCTAATCATCCACC 58.304 52.381 0.00 0.00 0.00 4.61
3639 7578 2.251338 ACTCCTCCCTAATCATCCACCT 59.749 50.000 0.00 0.00 0.00 4.00
3640 7579 3.471306 ACTCCTCCCTAATCATCCACCTA 59.529 47.826 0.00 0.00 0.00 3.08
3641 7580 4.110426 ACTCCTCCCTAATCATCCACCTAT 59.890 45.833 0.00 0.00 0.00 2.57
3642 7581 4.429505 TCCTCCCTAATCATCCACCTATG 58.570 47.826 0.00 0.00 0.00 2.23
3643 7582 4.140447 TCCTCCCTAATCATCCACCTATGT 60.140 45.833 0.00 0.00 0.00 2.29
3644 7583 5.077300 TCCTCCCTAATCATCCACCTATGTA 59.923 44.000 0.00 0.00 0.00 2.29
3645 7584 5.423610 CCTCCCTAATCATCCACCTATGTAG 59.576 48.000 0.00 0.00 0.00 2.74
3646 7585 4.777896 TCCCTAATCATCCACCTATGTAGC 59.222 45.833 0.00 0.00 0.00 3.58
3647 7586 4.080863 CCCTAATCATCCACCTATGTAGCC 60.081 50.000 0.00 0.00 0.00 3.93
3648 7587 4.080863 CCTAATCATCCACCTATGTAGCCC 60.081 50.000 0.00 0.00 0.00 5.19
3649 7588 2.487746 TCATCCACCTATGTAGCCCA 57.512 50.000 0.00 0.00 0.00 5.36
3650 7589 2.047061 TCATCCACCTATGTAGCCCAC 58.953 52.381 0.00 0.00 0.00 4.61
3651 7590 1.072331 CATCCACCTATGTAGCCCACC 59.928 57.143 0.00 0.00 0.00 4.61
3652 7591 0.693092 TCCACCTATGTAGCCCACCC 60.693 60.000 0.00 0.00 0.00 4.61
3653 7592 0.986019 CCACCTATGTAGCCCACCCA 60.986 60.000 0.00 0.00 0.00 4.51
3654 7593 0.469917 CACCTATGTAGCCCACCCAG 59.530 60.000 0.00 0.00 0.00 4.45
3655 7594 0.694444 ACCTATGTAGCCCACCCAGG 60.694 60.000 0.00 0.00 34.64 4.45
3656 7595 0.399949 CCTATGTAGCCCACCCAGGA 60.400 60.000 0.00 0.00 41.22 3.86
3657 7596 1.507140 CTATGTAGCCCACCCAGGAA 58.493 55.000 0.00 0.00 41.22 3.36
3658 7597 1.141053 CTATGTAGCCCACCCAGGAAC 59.859 57.143 0.00 0.00 41.22 3.62
3659 7598 1.571773 ATGTAGCCCACCCAGGAACC 61.572 60.000 0.00 0.00 41.22 3.62
3660 7599 2.612746 TAGCCCACCCAGGAACCC 60.613 66.667 0.00 0.00 41.22 4.11
3663 7602 3.339093 CCCACCCAGGAACCCCTC 61.339 72.222 0.00 0.00 42.02 4.30
3664 7603 3.339093 CCACCCAGGAACCCCTCC 61.339 72.222 0.00 0.00 42.02 4.30
3682 7621 3.198068 CTCCACCTATGTTTCGGTCATG 58.802 50.000 0.00 0.00 0.00 3.07
3739 7678 7.592938 TCAGTTCATCACCATCAATAACAAAC 58.407 34.615 0.00 0.00 0.00 2.93
3767 7706 1.059098 TGCAACTCCACCTCTCACAT 58.941 50.000 0.00 0.00 0.00 3.21
3801 7740 1.172812 GGGCCAACAAGTGACCACTC 61.173 60.000 4.39 0.00 41.58 3.51
3803 7742 1.071699 GGCCAACAAGTGACCACTCTA 59.928 52.381 0.00 0.00 41.58 2.43
3817 7756 6.926272 GTGACCACTCTATCTACCATCATTTC 59.074 42.308 0.00 0.00 0.00 2.17
3818 7757 6.042093 TGACCACTCTATCTACCATCATTTCC 59.958 42.308 0.00 0.00 0.00 3.13
3821 7760 7.102346 CCACTCTATCTACCATCATTTCCATC 58.898 42.308 0.00 0.00 0.00 3.51
3837 7776 3.138304 TCCATCAGAGGTTTCGTTGTTG 58.862 45.455 0.00 0.00 0.00 3.33
3841 7780 0.463116 AGAGGTTTCGTTGTTGCCGT 60.463 50.000 0.00 0.00 0.00 5.68
3851 7790 3.749088 TCGTTGTTGCCGTCATTTCTAAT 59.251 39.130 0.00 0.00 0.00 1.73
3855 7794 4.323417 TGTTGCCGTCATTTCTAATCACT 58.677 39.130 0.00 0.00 0.00 3.41
3856 7795 5.483811 TGTTGCCGTCATTTCTAATCACTA 58.516 37.500 0.00 0.00 0.00 2.74
3857 7796 6.112734 TGTTGCCGTCATTTCTAATCACTAT 58.887 36.000 0.00 0.00 0.00 2.12
3858 7797 6.257849 TGTTGCCGTCATTTCTAATCACTATC 59.742 38.462 0.00 0.00 0.00 2.08
3859 7798 6.161855 TGCCGTCATTTCTAATCACTATCT 57.838 37.500 0.00 0.00 0.00 1.98
3860 7799 6.582636 TGCCGTCATTTCTAATCACTATCTT 58.417 36.000 0.00 0.00 0.00 2.40
3861 7800 6.479990 TGCCGTCATTTCTAATCACTATCTTG 59.520 38.462 0.00 0.00 0.00 3.02
3862 7801 6.480320 GCCGTCATTTCTAATCACTATCTTGT 59.520 38.462 0.00 0.00 0.00 3.16
3881 7820 4.207891 TGTGCCAATAAGAAGAGGAGAC 57.792 45.455 0.00 0.00 0.00 3.36
3882 7821 3.055094 TGTGCCAATAAGAAGAGGAGACC 60.055 47.826 0.00 0.00 0.00 3.85
3905 7844 4.884164 CAGTCATGATTTCCCTAGGGTTTC 59.116 45.833 27.58 20.72 36.47 2.78
3911 7850 7.350921 TCATGATTTCCCTAGGGTTTCTATTCT 59.649 37.037 27.58 3.46 36.47 2.40
3938 7877 3.673902 TCATCATTGCGAAAGGTGAAGA 58.326 40.909 0.00 0.00 0.00 2.87
3941 7880 2.813754 TCATTGCGAAAGGTGAAGAAGG 59.186 45.455 0.00 0.00 0.00 3.46
3958 7897 4.060900 AGAAGGCAACATCGCTACATATG 58.939 43.478 0.00 0.00 39.88 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 5.879777 TGAGTCAAATTCACAGTTGTCTCAA 59.120 36.000 9.01 0.00 44.53 3.02
69 71 0.243907 AGCGTTGCGTGTAGTCATCT 59.756 50.000 0.00 0.00 0.00 2.90
162 165 4.078537 TGAACAACTCACATATTGGGTGG 58.921 43.478 0.00 0.00 38.32 4.61
201 204 1.209127 GTTCAACGCCCACCGATTG 59.791 57.895 0.00 0.00 41.02 2.67
202 205 2.322081 CGTTCAACGCCCACCGATT 61.322 57.895 0.00 0.00 41.02 3.34
217 226 3.581332 TCCCAACTTCTTGAGTATCCGTT 59.419 43.478 0.00 0.00 37.72 4.44
228 237 0.668535 GTTTGCGCTCCCAACTTCTT 59.331 50.000 9.73 0.00 0.00 2.52
229 238 0.179018 AGTTTGCGCTCCCAACTTCT 60.179 50.000 9.73 0.00 0.00 2.85
290 300 8.405531 CAACTTGTAGTTCCTCATTTTCTTGAA 58.594 33.333 0.00 0.00 36.03 2.69
300 311 3.728845 GACTGCAACTTGTAGTTCCTCA 58.271 45.455 13.08 0.00 43.31 3.86
320 331 0.904865 AAGAGTGCATGGGACTCCGA 60.905 55.000 13.27 0.00 40.75 4.55
321 332 0.036010 AAAGAGTGCATGGGACTCCG 60.036 55.000 13.27 0.00 40.75 4.63
335 346 0.247736 ACCGCTGCTACTCCAAAGAG 59.752 55.000 0.00 0.00 46.36 2.85
362 373 6.048732 TGTACATTGGACTTGAGCTTATCA 57.951 37.500 0.00 0.00 35.62 2.15
399 410 4.161377 TCCATCACACTGAATTCGTCCATA 59.839 41.667 0.04 0.00 0.00 2.74
414 425 5.104941 ACCTTGACGAATATTCTCCATCACA 60.105 40.000 13.45 1.26 0.00 3.58
418 429 5.614324 TCACCTTGACGAATATTCTCCAT 57.386 39.130 13.45 0.00 0.00 3.41
432 443 7.122055 ACACAATTCTAACAAACTTCACCTTGA 59.878 33.333 0.00 0.00 0.00 3.02
469 480 6.382925 AGTCCAACTGTAGGCTACCTTATAT 58.617 40.000 21.34 0.02 34.61 0.86
559 570 8.441572 TGTGCTTAGCCCCACTATATATAAAAA 58.558 33.333 0.29 0.00 33.26 1.94
561 572 7.391620 GTGTGCTTAGCCCCACTATATATAAA 58.608 38.462 14.24 0.00 33.26 1.40
581 2623 1.597663 GGCATAGGTTACATCGTGTGC 59.402 52.381 1.58 0.00 38.75 4.57
709 2753 1.713297 GTATGACTACATCCCGGGGT 58.287 55.000 23.50 12.21 37.87 4.95
723 2769 4.175516 GTTAACGTGATTCACCGGTATGA 58.824 43.478 6.87 0.00 0.00 2.15
738 2784 2.219216 CGACACCGACATTTGTTAACGT 59.781 45.455 0.26 0.00 38.22 3.99
770 2817 8.388103 CGTCGATTATTCAAGGACTAAACAATT 58.612 33.333 0.00 0.00 0.00 2.32
775 2822 5.969423 ACCGTCGATTATTCAAGGACTAAA 58.031 37.500 0.00 0.00 0.00 1.85
868 2917 9.992442 TTATAAGAACCCTAGCTAGCATATACT 57.008 33.333 18.83 6.44 0.00 2.12
893 2943 6.575162 AAGCGTCATCAAAGGAAAATACTT 57.425 33.333 0.00 0.00 0.00 2.24
907 2957 1.191204 GCTAGCATCGAAAGCGTCATC 59.809 52.381 10.63 0.00 38.98 2.92
934 2987 7.032377 ACACAAATGAGAAAAGAAAGACCTC 57.968 36.000 0.00 0.00 0.00 3.85
936 2989 6.019559 GCAACACAAATGAGAAAAGAAAGACC 60.020 38.462 0.00 0.00 0.00 3.85
965 3018 1.339151 GGTGGCCCTGTAGAACAAGAG 60.339 57.143 0.00 0.00 0.00 2.85
969 3022 0.847373 TTTGGTGGCCCTGTAGAACA 59.153 50.000 0.00 0.00 0.00 3.18
1005 3058 2.440539 GGTGATCATCTTCGCCGTAT 57.559 50.000 0.00 0.00 36.61 3.06
1060 3116 8.865420 ATTATCTCAGGAGGAAAATGATGATG 57.135 34.615 0.00 0.00 0.00 3.07
1102 3158 1.528586 GGTGATTCAAGGCATCGATCG 59.471 52.381 9.36 9.36 0.00 3.69
1104 3160 2.804572 CGAGGTGATTCAAGGCATCGAT 60.805 50.000 4.42 0.00 0.00 3.59
1108 3164 1.745141 GCTCGAGGTGATTCAAGGCAT 60.745 52.381 15.58 0.00 0.00 4.40
1110 3166 0.391661 TGCTCGAGGTGATTCAAGGC 60.392 55.000 15.58 0.00 0.00 4.35
1331 3417 5.028375 GTGTCAAAAGTTAGTTCTGTGTGC 58.972 41.667 0.00 0.00 0.00 4.57
1709 3799 1.541233 GGGCACATCAAGGATAGGTCG 60.541 57.143 0.00 0.00 0.00 4.79
1893 4033 2.674177 GCCGTCTCTGGATTTCTCGAAA 60.674 50.000 0.00 0.00 34.46 3.46
1941 4081 5.876460 GGAATGAATTGGAGGTTTGATTTGG 59.124 40.000 0.00 0.00 0.00 3.28
2090 4266 1.495951 CGCCTTTGCACGGTAGAAC 59.504 57.895 3.38 0.00 37.32 3.01
2169 4345 0.323087 GGGGCTACCGATGGTTTTGT 60.323 55.000 0.00 0.00 37.09 2.83
2184 4360 4.660938 AACTGGCGTTGAGGGGGC 62.661 66.667 0.00 0.00 30.67 5.80
2200 4422 6.400568 CCGGGAACTAGATTACAGTTTACAA 58.599 40.000 0.00 0.00 36.38 2.41
2201 4423 5.625197 GCCGGGAACTAGATTACAGTTTACA 60.625 44.000 2.18 0.00 36.38 2.41
2202 4424 4.807834 GCCGGGAACTAGATTACAGTTTAC 59.192 45.833 2.18 0.00 36.38 2.01
2203 4425 4.467082 TGCCGGGAACTAGATTACAGTTTA 59.533 41.667 2.18 0.00 36.38 2.01
2204 4426 3.262405 TGCCGGGAACTAGATTACAGTTT 59.738 43.478 2.18 0.00 36.38 2.66
2205 4427 2.835764 TGCCGGGAACTAGATTACAGTT 59.164 45.455 2.18 0.00 38.92 3.16
2206 4428 2.431057 CTGCCGGGAACTAGATTACAGT 59.569 50.000 2.18 0.00 0.00 3.55
2207 4429 2.693591 TCTGCCGGGAACTAGATTACAG 59.306 50.000 2.18 0.00 0.00 2.74
2208 4430 2.429610 GTCTGCCGGGAACTAGATTACA 59.570 50.000 2.18 0.00 0.00 2.41
2209 4431 2.543238 CGTCTGCCGGGAACTAGATTAC 60.543 54.545 2.18 0.00 0.00 1.89
2210 4432 1.679680 CGTCTGCCGGGAACTAGATTA 59.320 52.381 2.18 0.00 0.00 1.75
2211 4433 0.460311 CGTCTGCCGGGAACTAGATT 59.540 55.000 2.18 0.00 0.00 2.40
2212 4434 2.116383 CGTCTGCCGGGAACTAGAT 58.884 57.895 2.18 0.00 0.00 1.98
2213 4435 3.599584 CGTCTGCCGGGAACTAGA 58.400 61.111 2.18 0.00 0.00 2.43
2222 4444 0.454957 CTTTCATTTGCCGTCTGCCG 60.455 55.000 0.00 0.00 40.16 5.69
2223 4445 0.881118 TCTTTCATTTGCCGTCTGCC 59.119 50.000 0.00 0.00 40.16 4.85
2224 4446 2.478539 GGATCTTTCATTTGCCGTCTGC 60.479 50.000 0.00 0.00 41.77 4.26
2225 4447 2.749076 TGGATCTTTCATTTGCCGTCTG 59.251 45.455 0.00 0.00 0.00 3.51
2226 4448 3.071874 TGGATCTTTCATTTGCCGTCT 57.928 42.857 0.00 0.00 0.00 4.18
2227 4449 4.335315 TGTATGGATCTTTCATTTGCCGTC 59.665 41.667 0.00 0.00 0.00 4.79
2228 4450 4.269183 TGTATGGATCTTTCATTTGCCGT 58.731 39.130 0.00 0.00 0.00 5.68
2229 4451 4.898829 TGTATGGATCTTTCATTTGCCG 57.101 40.909 0.00 0.00 0.00 5.69
2230 4452 6.017109 ACGTATGTATGGATCTTTCATTTGCC 60.017 38.462 0.00 0.00 0.00 4.52
2231 4453 6.959361 ACGTATGTATGGATCTTTCATTTGC 58.041 36.000 0.00 0.00 0.00 3.68
2232 4454 9.438291 GAAACGTATGTATGGATCTTTCATTTG 57.562 33.333 0.00 0.00 0.00 2.32
2233 4455 9.173021 TGAAACGTATGTATGGATCTTTCATTT 57.827 29.630 0.00 0.00 0.00 2.32
2234 4456 8.731275 TGAAACGTATGTATGGATCTTTCATT 57.269 30.769 0.00 0.00 0.00 2.57
2250 4472 2.230508 TCGTCTTCAGCCTGAAACGTAT 59.769 45.455 26.18 0.00 35.73 3.06
2308 4530 3.246226 CGTAGTCCATGTTCTGCATAAGC 59.754 47.826 0.00 0.00 42.57 3.09
2376 4598 0.810426 GTCTTCGGCGAGAAATCCCC 60.810 60.000 10.46 0.00 38.57 4.81
2465 4687 6.109359 TCCTTCGTAGTGTAGGAGTAGTAAC 58.891 44.000 0.00 0.00 33.23 2.50
2479 4701 4.630069 CGTTTTCATTCCATCCTTCGTAGT 59.370 41.667 0.00 0.00 0.00 2.73
2480 4702 4.494199 GCGTTTTCATTCCATCCTTCGTAG 60.494 45.833 0.00 0.00 0.00 3.51
2481 4703 3.372822 GCGTTTTCATTCCATCCTTCGTA 59.627 43.478 0.00 0.00 0.00 3.43
2482 4704 2.161609 GCGTTTTCATTCCATCCTTCGT 59.838 45.455 0.00 0.00 0.00 3.85
2483 4705 2.785679 GCGTTTTCATTCCATCCTTCG 58.214 47.619 0.00 0.00 0.00 3.79
2484 4706 2.785679 CGCGTTTTCATTCCATCCTTC 58.214 47.619 0.00 0.00 0.00 3.46
2497 4719 4.067016 CGTACCTGCGCGCGTTTT 62.067 61.111 32.35 15.59 0.00 2.43
2533 4755 1.080025 AAGTCCGAGCCGTTGTAGC 60.080 57.895 0.00 0.00 0.00 3.58
2550 4772 1.007734 GCGCGTATCTCCCGATCAA 60.008 57.895 8.43 0.00 0.00 2.57
2648 4870 1.041447 ACCTGGCGGCGTAGTAGAAT 61.041 55.000 9.37 0.00 0.00 2.40
2693 4915 1.528542 TCCCAGAGCCGATACGAGG 60.529 63.158 0.00 0.00 0.00 4.63
2704 4926 1.079543 CCGTTGCTGAGTCCCAGAG 60.080 63.158 0.00 0.00 45.78 3.35
2753 4975 2.547990 CTAACCTTGTAGGGTCTGGGT 58.452 52.381 0.00 0.00 40.58 4.51
2781 5003 4.097714 GTGTGGAATGATTGTGCAATACG 58.902 43.478 0.00 0.00 0.00 3.06
2784 5006 3.056393 CCAGTGTGGAATGATTGTGCAAT 60.056 43.478 0.00 0.00 40.96 3.56
2802 5024 4.522022 AGTAGTTAAGCTAACGTGTCCAGT 59.478 41.667 0.00 0.00 43.29 4.00
2805 5027 5.051891 TCAGTAGTTAAGCTAACGTGTCC 57.948 43.478 0.00 0.00 43.29 4.02
2820 5042 3.080319 GACACGAGGGTAACTCAGTAGT 58.920 50.000 0.00 0.00 46.98 2.73
2974 5294 3.012518 GGAACAAGTCTGGATGACATGG 58.987 50.000 0.00 0.00 45.51 3.66
3041 6035 0.459411 AAGCGCACCAACACCAAAAC 60.459 50.000 11.47 0.00 0.00 2.43
3057 6051 4.426112 GCCGCCTTGCAGGAAAGC 62.426 66.667 0.00 0.00 37.67 3.51
3071 6065 1.639298 GCTCCAACTAGTTGCAGCCG 61.639 60.000 32.68 18.32 45.93 5.52
3127 6122 4.882427 TGGAAAGTGGAACAACAATTACGA 59.118 37.500 0.00 0.00 44.16 3.43
3129 7067 6.420604 CACATGGAAAGTGGAACAACAATTAC 59.579 38.462 0.00 0.00 44.16 1.89
3143 7081 1.333619 GCGTGAACACACATGGAAAGT 59.666 47.619 0.00 0.00 34.59 2.66
3148 7086 1.081906 GCAGCGTGAACACACATGG 60.082 57.895 0.00 0.00 34.59 3.66
3149 7087 0.308684 AAGCAGCGTGAACACACATG 59.691 50.000 5.80 0.00 34.59 3.21
3268 7207 3.727726 TGCATCGATGAATACATTCGGT 58.272 40.909 29.20 0.00 39.62 4.69
3270 7209 5.142265 CCTTTGCATCGATGAATACATTCG 58.858 41.667 29.20 8.11 39.62 3.34
3304 7243 4.648762 TGGAGGCATTTTGTGAAAAGAAGA 59.351 37.500 0.00 0.00 33.22 2.87
3369 7308 8.792633 CACCCAAATATATAAATGACGGTTCAT 58.207 33.333 0.00 0.00 44.98 2.57
3370 7309 7.229707 CCACCCAAATATATAAATGACGGTTCA 59.770 37.037 0.00 0.00 35.73 3.18
3371 7310 7.446013 TCCACCCAAATATATAAATGACGGTTC 59.554 37.037 0.00 0.00 0.00 3.62
3372 7311 7.291566 TCCACCCAAATATATAAATGACGGTT 58.708 34.615 0.00 0.00 0.00 4.44
3386 7325 7.235193 CCCAAATATTGATGATCCACCCAAATA 59.765 37.037 0.00 0.00 0.00 1.40
3414 7353 3.438781 TGTCCGTGATATGAAGTTTTGGC 59.561 43.478 0.00 0.00 0.00 4.52
3457 7396 8.511604 AGATATGACCGAAACATGAGAAAAAT 57.488 30.769 0.00 0.00 0.00 1.82
3510 7449 9.061435 GCCCTCCTTCTTTAATATATGATATGC 57.939 37.037 0.00 0.00 0.00 3.14
3514 7453 9.525826 CTTTGCCCTCCTTCTTTAATATATGAT 57.474 33.333 0.00 0.00 0.00 2.45
3515 7454 7.448469 GCTTTGCCCTCCTTCTTTAATATATGA 59.552 37.037 0.00 0.00 0.00 2.15
3516 7455 7.231317 TGCTTTGCCCTCCTTCTTTAATATATG 59.769 37.037 0.00 0.00 0.00 1.78
3517 7456 7.297614 TGCTTTGCCCTCCTTCTTTAATATAT 58.702 34.615 0.00 0.00 0.00 0.86
3518 7457 6.668645 TGCTTTGCCCTCCTTCTTTAATATA 58.331 36.000 0.00 0.00 0.00 0.86
3519 7458 5.518865 TGCTTTGCCCTCCTTCTTTAATAT 58.481 37.500 0.00 0.00 0.00 1.28
3520 7459 4.929479 TGCTTTGCCCTCCTTCTTTAATA 58.071 39.130 0.00 0.00 0.00 0.98
3521 7460 3.778265 TGCTTTGCCCTCCTTCTTTAAT 58.222 40.909 0.00 0.00 0.00 1.40
3522 7461 3.237268 TGCTTTGCCCTCCTTCTTTAA 57.763 42.857 0.00 0.00 0.00 1.52
3523 7462 2.969821 TGCTTTGCCCTCCTTCTTTA 57.030 45.000 0.00 0.00 0.00 1.85
3524 7463 1.897802 CATGCTTTGCCCTCCTTCTTT 59.102 47.619 0.00 0.00 0.00 2.52
3525 7464 1.553706 CATGCTTTGCCCTCCTTCTT 58.446 50.000 0.00 0.00 0.00 2.52
3526 7465 0.969409 GCATGCTTTGCCCTCCTTCT 60.969 55.000 11.37 0.00 46.15 2.85
3527 7466 1.514553 GCATGCTTTGCCCTCCTTC 59.485 57.895 11.37 0.00 46.15 3.46
3528 7467 3.704151 GCATGCTTTGCCCTCCTT 58.296 55.556 11.37 0.00 46.15 3.36
3536 7475 0.963962 AACTGTGGAGGCATGCTTTG 59.036 50.000 18.92 3.99 0.00 2.77
3537 7476 2.162681 GTAACTGTGGAGGCATGCTTT 58.837 47.619 18.92 6.28 0.00 3.51
3538 7477 1.073763 TGTAACTGTGGAGGCATGCTT 59.926 47.619 18.92 10.66 0.00 3.91
3539 7478 0.692476 TGTAACTGTGGAGGCATGCT 59.308 50.000 18.92 3.20 0.00 3.79
3540 7479 1.755179 ATGTAACTGTGGAGGCATGC 58.245 50.000 9.90 9.90 0.00 4.06
3541 7480 4.260985 TGTAATGTAACTGTGGAGGCATG 58.739 43.478 0.00 0.00 0.00 4.06
3542 7481 4.568072 TGTAATGTAACTGTGGAGGCAT 57.432 40.909 0.00 0.00 0.00 4.40
3543 7482 4.323417 CTTGTAATGTAACTGTGGAGGCA 58.677 43.478 0.00 0.00 0.00 4.75
3544 7483 3.127030 GCTTGTAATGTAACTGTGGAGGC 59.873 47.826 0.00 0.00 0.00 4.70
3545 7484 3.689649 GGCTTGTAATGTAACTGTGGAGG 59.310 47.826 0.00 0.00 0.00 4.30
3546 7485 4.393062 CAGGCTTGTAATGTAACTGTGGAG 59.607 45.833 0.00 0.00 0.00 3.86
3547 7486 4.202419 ACAGGCTTGTAATGTAACTGTGGA 60.202 41.667 0.00 0.00 35.25 4.02
3548 7487 4.072131 ACAGGCTTGTAATGTAACTGTGG 58.928 43.478 0.00 0.00 35.25 4.17
3549 7488 5.163992 CGTACAGGCTTGTAATGTAACTGTG 60.164 44.000 10.63 0.00 41.25 3.66
3550 7489 4.927425 CGTACAGGCTTGTAATGTAACTGT 59.073 41.667 10.63 0.00 41.25 3.55
3551 7490 4.328983 CCGTACAGGCTTGTAATGTAACTG 59.671 45.833 10.63 0.00 41.25 3.16
3552 7491 4.501071 CCGTACAGGCTTGTAATGTAACT 58.499 43.478 10.63 0.00 41.25 2.24
3553 7492 4.852609 CCGTACAGGCTTGTAATGTAAC 57.147 45.455 10.63 0.00 41.25 2.50
3566 7505 0.392060 GGGTTGTAAGGCCGTACAGG 60.392 60.000 26.93 0.00 44.97 4.00
3567 7506 0.738412 CGGGTTGTAAGGCCGTACAG 60.738 60.000 26.93 14.74 35.47 2.74
3568 7507 1.292860 CGGGTTGTAAGGCCGTACA 59.707 57.895 25.27 25.27 32.11 2.90
3569 7508 0.530288 TACGGGTTGTAAGGCCGTAC 59.470 55.000 20.59 20.59 38.14 3.67
3570 7509 0.530288 GTACGGGTTGTAAGGCCGTA 59.470 55.000 0.00 0.00 38.14 4.02
3571 7510 1.293179 GTACGGGTTGTAAGGCCGT 59.707 57.895 0.00 0.00 40.26 5.68
3572 7511 1.448365 GGTACGGGTTGTAAGGCCG 60.448 63.158 0.00 0.00 34.07 6.13
3573 7512 1.078214 GGGTACGGGTTGTAAGGCC 60.078 63.158 0.00 0.00 34.07 5.19
3574 7513 1.448365 CGGGTACGGGTTGTAAGGC 60.448 63.158 0.00 0.00 34.07 4.35
3575 7514 1.448365 GCGGGTACGGGTTGTAAGG 60.448 63.158 0.00 0.00 41.36 2.69
3576 7515 0.459063 GAGCGGGTACGGGTTGTAAG 60.459 60.000 0.00 0.00 40.09 2.34
3577 7516 1.591183 GAGCGGGTACGGGTTGTAA 59.409 57.895 0.00 0.00 40.09 2.41
3578 7517 2.350458 GGAGCGGGTACGGGTTGTA 61.350 63.158 0.00 0.00 40.09 2.41
3579 7518 3.698820 GGAGCGGGTACGGGTTGT 61.699 66.667 0.00 0.00 40.09 3.32
3580 7519 3.697747 TGGAGCGGGTACGGGTTG 61.698 66.667 0.00 0.00 40.09 3.77
3581 7520 3.698820 GTGGAGCGGGTACGGGTT 61.699 66.667 0.00 0.00 40.09 4.11
3582 7521 2.786512 TAAGTGGAGCGGGTACGGGT 62.787 60.000 0.00 0.00 43.42 5.28
3583 7522 1.606885 TTAAGTGGAGCGGGTACGGG 61.607 60.000 0.00 0.00 41.36 5.28
3584 7523 0.247185 TTTAAGTGGAGCGGGTACGG 59.753 55.000 0.00 0.00 41.36 4.02
3585 7524 1.353076 GTTTAAGTGGAGCGGGTACG 58.647 55.000 0.00 0.00 44.63 3.67
3586 7525 1.353076 CGTTTAAGTGGAGCGGGTAC 58.647 55.000 0.00 0.00 0.00 3.34
3587 7526 0.390209 GCGTTTAAGTGGAGCGGGTA 60.390 55.000 0.00 0.00 0.00 3.69
3588 7527 1.670083 GCGTTTAAGTGGAGCGGGT 60.670 57.895 0.00 0.00 0.00 5.28
3589 7528 1.669760 TGCGTTTAAGTGGAGCGGG 60.670 57.895 0.00 0.00 0.00 6.13
3590 7529 1.225376 TGTGCGTTTAAGTGGAGCGG 61.225 55.000 0.00 0.00 0.00 5.52
3591 7530 0.110823 GTGTGCGTTTAAGTGGAGCG 60.111 55.000 0.00 0.00 0.00 5.03
3592 7531 0.941542 TGTGTGCGTTTAAGTGGAGC 59.058 50.000 0.00 0.00 0.00 4.70
3593 7532 4.034048 GGATATGTGTGCGTTTAAGTGGAG 59.966 45.833 0.00 0.00 0.00 3.86
3594 7533 3.936453 GGATATGTGTGCGTTTAAGTGGA 59.064 43.478 0.00 0.00 0.00 4.02
3595 7534 3.938963 AGGATATGTGTGCGTTTAAGTGG 59.061 43.478 0.00 0.00 0.00 4.00
3596 7535 5.810587 AGTAGGATATGTGTGCGTTTAAGTG 59.189 40.000 0.00 0.00 0.00 3.16
3597 7536 5.974108 AGTAGGATATGTGTGCGTTTAAGT 58.026 37.500 0.00 0.00 0.00 2.24
3598 7537 5.462398 GGAGTAGGATATGTGTGCGTTTAAG 59.538 44.000 0.00 0.00 0.00 1.85
3599 7538 5.128171 AGGAGTAGGATATGTGTGCGTTTAA 59.872 40.000 0.00 0.00 0.00 1.52
3600 7539 4.647853 AGGAGTAGGATATGTGTGCGTTTA 59.352 41.667 0.00 0.00 0.00 2.01
3601 7540 3.451178 AGGAGTAGGATATGTGTGCGTTT 59.549 43.478 0.00 0.00 0.00 3.60
3602 7541 3.031736 AGGAGTAGGATATGTGTGCGTT 58.968 45.455 0.00 0.00 0.00 4.84
3603 7542 2.623889 GAGGAGTAGGATATGTGTGCGT 59.376 50.000 0.00 0.00 0.00 5.24
3604 7543 2.029828 GGAGGAGTAGGATATGTGTGCG 60.030 54.545 0.00 0.00 0.00 5.34
3605 7544 2.300437 GGGAGGAGTAGGATATGTGTGC 59.700 54.545 0.00 0.00 0.00 4.57
3606 7545 3.850752 AGGGAGGAGTAGGATATGTGTG 58.149 50.000 0.00 0.00 0.00 3.82
3607 7546 5.681494 TTAGGGAGGAGTAGGATATGTGT 57.319 43.478 0.00 0.00 0.00 3.72
3608 7547 6.256819 TGATTAGGGAGGAGTAGGATATGTG 58.743 44.000 0.00 0.00 0.00 3.21
3609 7548 6.485388 TGATTAGGGAGGAGTAGGATATGT 57.515 41.667 0.00 0.00 0.00 2.29
3610 7549 6.553100 GGATGATTAGGGAGGAGTAGGATATG 59.447 46.154 0.00 0.00 0.00 1.78
3611 7550 6.222718 TGGATGATTAGGGAGGAGTAGGATAT 59.777 42.308 0.00 0.00 0.00 1.63
3612 7551 5.559947 TGGATGATTAGGGAGGAGTAGGATA 59.440 44.000 0.00 0.00 0.00 2.59
3613 7552 4.361367 TGGATGATTAGGGAGGAGTAGGAT 59.639 45.833 0.00 0.00 0.00 3.24
3614 7553 3.732742 TGGATGATTAGGGAGGAGTAGGA 59.267 47.826 0.00 0.00 0.00 2.94
3615 7554 3.835395 GTGGATGATTAGGGAGGAGTAGG 59.165 52.174 0.00 0.00 0.00 3.18
3616 7555 3.835395 GGTGGATGATTAGGGAGGAGTAG 59.165 52.174 0.00 0.00 0.00 2.57
3617 7556 3.471306 AGGTGGATGATTAGGGAGGAGTA 59.529 47.826 0.00 0.00 0.00 2.59
3618 7557 2.251338 AGGTGGATGATTAGGGAGGAGT 59.749 50.000 0.00 0.00 0.00 3.85
3619 7558 2.983296 AGGTGGATGATTAGGGAGGAG 58.017 52.381 0.00 0.00 0.00 3.69
3620 7559 4.140447 ACATAGGTGGATGATTAGGGAGGA 60.140 45.833 0.00 0.00 0.00 3.71
3621 7560 4.171234 ACATAGGTGGATGATTAGGGAGG 58.829 47.826 0.00 0.00 0.00 4.30
3622 7561 5.105146 GCTACATAGGTGGATGATTAGGGAG 60.105 48.000 0.00 0.00 0.00 4.30
3623 7562 4.777896 GCTACATAGGTGGATGATTAGGGA 59.222 45.833 0.00 0.00 0.00 4.20
3624 7563 4.080863 GGCTACATAGGTGGATGATTAGGG 60.081 50.000 0.00 0.00 0.00 3.53
3625 7564 4.080863 GGGCTACATAGGTGGATGATTAGG 60.081 50.000 0.00 0.00 0.00 2.69
3626 7565 4.532126 TGGGCTACATAGGTGGATGATTAG 59.468 45.833 0.00 0.00 0.00 1.73
3627 7566 4.286032 GTGGGCTACATAGGTGGATGATTA 59.714 45.833 0.00 0.00 0.00 1.75
3628 7567 3.073062 GTGGGCTACATAGGTGGATGATT 59.927 47.826 0.00 0.00 0.00 2.57
3629 7568 2.639839 GTGGGCTACATAGGTGGATGAT 59.360 50.000 0.00 0.00 0.00 2.45
3630 7569 2.047061 GTGGGCTACATAGGTGGATGA 58.953 52.381 0.00 0.00 0.00 2.92
3631 7570 1.072331 GGTGGGCTACATAGGTGGATG 59.928 57.143 2.66 0.00 0.00 3.51
3632 7571 1.435256 GGTGGGCTACATAGGTGGAT 58.565 55.000 2.66 0.00 0.00 3.41
3633 7572 0.693092 GGGTGGGCTACATAGGTGGA 60.693 60.000 2.66 0.00 0.00 4.02
3634 7573 0.986019 TGGGTGGGCTACATAGGTGG 60.986 60.000 2.66 0.00 0.00 4.61
3635 7574 0.469917 CTGGGTGGGCTACATAGGTG 59.530 60.000 2.66 0.00 0.00 4.00
3636 7575 0.694444 CCTGGGTGGGCTACATAGGT 60.694 60.000 12.58 0.00 32.38 3.08
3637 7576 0.399949 TCCTGGGTGGGCTACATAGG 60.400 60.000 14.04 14.04 36.06 2.57
3638 7577 1.141053 GTTCCTGGGTGGGCTACATAG 59.859 57.143 2.66 0.02 36.20 2.23
3639 7578 1.209621 GTTCCTGGGTGGGCTACATA 58.790 55.000 2.66 0.00 36.20 2.29
3640 7579 1.571773 GGTTCCTGGGTGGGCTACAT 61.572 60.000 2.66 0.00 36.20 2.29
3641 7580 2.228480 GGTTCCTGGGTGGGCTACA 61.228 63.158 2.66 0.00 36.20 2.74
3642 7581 2.675371 GGTTCCTGGGTGGGCTAC 59.325 66.667 0.00 0.00 36.20 3.58
3643 7582 2.612746 GGGTTCCTGGGTGGGCTA 60.613 66.667 0.00 0.00 36.20 3.93
3646 7585 3.339093 GAGGGGTTCCTGGGTGGG 61.339 72.222 0.00 0.00 45.05 4.61
3647 7586 3.339093 GGAGGGGTTCCTGGGTGG 61.339 72.222 0.00 0.00 45.05 4.61
3648 7587 2.531685 TGGAGGGGTTCCTGGGTG 60.532 66.667 0.00 0.00 46.92 4.61
3649 7588 2.531942 GTGGAGGGGTTCCTGGGT 60.532 66.667 0.00 0.00 46.92 4.51
3650 7589 2.486410 TAGGTGGAGGGGTTCCTGGG 62.486 65.000 0.00 0.00 46.92 4.45
3651 7590 0.327576 ATAGGTGGAGGGGTTCCTGG 60.328 60.000 0.00 0.00 46.92 4.45
3652 7591 0.839946 CATAGGTGGAGGGGTTCCTG 59.160 60.000 0.00 0.00 46.92 3.86
3653 7592 0.421904 ACATAGGTGGAGGGGTTCCT 59.578 55.000 0.00 0.00 46.92 3.36
3654 7593 1.296002 AACATAGGTGGAGGGGTTCC 58.704 55.000 0.00 0.00 46.98 3.62
3655 7594 2.679930 CGAAACATAGGTGGAGGGGTTC 60.680 54.545 0.00 0.00 0.00 3.62
3656 7595 1.280998 CGAAACATAGGTGGAGGGGTT 59.719 52.381 0.00 0.00 0.00 4.11
3657 7596 0.909623 CGAAACATAGGTGGAGGGGT 59.090 55.000 0.00 0.00 0.00 4.95
3658 7597 0.180406 CCGAAACATAGGTGGAGGGG 59.820 60.000 0.00 0.00 0.00 4.79
3659 7598 0.909623 ACCGAAACATAGGTGGAGGG 59.090 55.000 0.00 0.00 39.66 4.30
3660 7599 1.553248 TGACCGAAACATAGGTGGAGG 59.447 52.381 0.00 0.00 41.51 4.30
3661 7600 3.198068 CATGACCGAAACATAGGTGGAG 58.802 50.000 0.00 0.00 41.51 3.86
3662 7601 2.569853 ACATGACCGAAACATAGGTGGA 59.430 45.455 0.00 0.00 41.51 4.02
3663 7602 2.985896 ACATGACCGAAACATAGGTGG 58.014 47.619 0.00 0.00 41.51 4.61
3664 7603 4.000325 TGAACATGACCGAAACATAGGTG 59.000 43.478 0.00 0.00 41.51 4.00
3665 7604 4.280436 TGAACATGACCGAAACATAGGT 57.720 40.909 0.00 0.00 44.64 3.08
3666 7605 4.875536 TGATGAACATGACCGAAACATAGG 59.124 41.667 0.00 0.00 0.00 2.57
3667 7606 6.258507 TGATGATGAACATGACCGAAACATAG 59.741 38.462 0.00 0.00 39.56 2.23
3668 7607 6.112058 TGATGATGAACATGACCGAAACATA 58.888 36.000 0.00 0.00 39.56 2.29
3682 7621 3.921119 TGCCACAGTTTGATGATGAAC 57.079 42.857 0.00 0.00 0.00 3.18
3739 7678 3.009723 AGGTGGAGTTGCATGTTAATCG 58.990 45.455 0.00 0.00 0.00 3.34
3801 7740 7.038445 ACCTCTGATGGAAATGATGGTAGATAG 60.038 40.741 0.00 0.00 0.00 2.08
3803 7742 5.610132 ACCTCTGATGGAAATGATGGTAGAT 59.390 40.000 0.00 0.00 0.00 1.98
3817 7756 2.350772 GCAACAACGAAACCTCTGATGG 60.351 50.000 0.00 0.00 0.00 3.51
3818 7757 2.350772 GGCAACAACGAAACCTCTGATG 60.351 50.000 0.00 0.00 0.00 3.07
3821 7760 0.041312 CGGCAACAACGAAACCTCTG 60.041 55.000 0.00 0.00 0.00 3.35
3837 7776 6.480320 ACAAGATAGTGATTAGAAATGACGGC 59.520 38.462 0.00 0.00 0.00 5.68
3841 7780 7.337938 TGGCACAAGATAGTGATTAGAAATGA 58.662 34.615 0.00 0.00 42.05 2.57
3860 7799 3.055094 GGTCTCCTCTTCTTATTGGCACA 60.055 47.826 0.00 0.00 0.00 4.57
3861 7800 3.055094 TGGTCTCCTCTTCTTATTGGCAC 60.055 47.826 0.00 0.00 0.00 5.01
3862 7801 3.181329 TGGTCTCCTCTTCTTATTGGCA 58.819 45.455 0.00 0.00 0.00 4.92
3881 7820 2.780010 ACCCTAGGGAAATCATGACTGG 59.220 50.000 35.38 2.34 38.96 4.00
3882 7821 4.510167 AACCCTAGGGAAATCATGACTG 57.490 45.455 35.38 2.82 38.96 3.51
3905 7844 4.919754 TCGCAATGATGATGTCGAGAATAG 59.080 41.667 0.00 0.00 0.00 1.73
3911 7850 2.609002 CCTTTCGCAATGATGATGTCGA 59.391 45.455 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.