Multiple sequence alignment - TraesCS2D01G207800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G207800 chr2D 100.000 4390 0 0 1 4390 161898907 161903296 0.000000e+00 8107.0
1 TraesCS2D01G207800 chr2B 95.022 3837 130 30 1 3814 221086123 221089921 0.000000e+00 5971.0
2 TraesCS2D01G207800 chr2B 87.465 359 43 2 3847 4203 625067168 625066810 3.160000e-111 412.0
3 TraesCS2D01G207800 chr2B 87.640 356 43 1 3849 4203 788223917 788223562 3.160000e-111 412.0
4 TraesCS2D01G207800 chr2B 100.000 28 0 0 4363 4390 221090040 221090067 8.000000e-03 52.8
5 TraesCS2D01G207800 chr2A 95.117 3768 124 19 1 3750 172536059 172539784 0.000000e+00 5884.0
6 TraesCS2D01G207800 chr2A 83.978 181 21 6 4212 4390 172539856 172540030 2.720000e-37 167.0
7 TraesCS2D01G207800 chr3B 88.022 359 41 2 3847 4203 403691799 403691441 1.460000e-114 424.0
8 TraesCS2D01G207800 chr3B 87.222 360 44 2 3848 4206 561179867 561179509 4.090000e-110 409.0
9 TraesCS2D01G207800 chr3B 86.921 367 42 4 3849 4213 527656441 527656079 1.470000e-109 407.0
10 TraesCS2D01G207800 chr7B 87.709 358 41 3 3848 4203 140152633 140152277 8.780000e-112 414.0
11 TraesCS2D01G207800 chr7B 96.624 237 8 0 1918 2154 708484449 708484213 1.140000e-105 394.0
12 TraesCS2D01G207800 chr7B 92.466 146 11 0 1218 1363 662970643 662970788 4.450000e-50 209.0
13 TraesCS2D01G207800 chr7B 92.466 146 8 1 1218 1363 663833778 663833636 5.760000e-49 206.0
14 TraesCS2D01G207800 chr4B 87.709 358 41 3 3848 4203 585203720 585204076 8.780000e-112 414.0
15 TraesCS2D01G207800 chr4B 77.105 380 76 9 1680 2055 26792725 26793097 4.450000e-50 209.0
16 TraesCS2D01G207800 chr5B 87.293 362 40 4 3849 4208 588498239 588498596 4.090000e-110 409.0
17 TraesCS2D01G207800 chr5B 94.521 146 8 0 1218 1363 8949859 8950004 4.420000e-55 226.0
18 TraesCS2D01G207800 chr6B 87.017 362 44 3 3845 4203 8815680 8816041 5.290000e-109 405.0
19 TraesCS2D01G207800 chr6D 94.400 250 14 0 2066 2315 43048498 43048249 6.890000e-103 385.0
20 TraesCS2D01G207800 chr6D 99.296 142 1 0 1918 2059 43049764 43049623 1.570000e-64 257.0
21 TraesCS2D01G207800 chr7D 91.813 171 13 1 1193 1363 11941709 11941540 2.040000e-58 237.0
22 TraesCS2D01G207800 chr7D 92.683 164 10 2 1204 1365 37312530 37312367 7.340000e-58 235.0
23 TraesCS2D01G207800 chr1D 78.125 384 70 13 1678 2054 52576431 52576055 9.500000e-57 231.0
24 TraesCS2D01G207800 chr1B 77.895 380 70 13 1682 2054 83640133 83639761 1.590000e-54 224.0
25 TraesCS2D01G207800 chr4A 93.836 146 9 0 1218 1363 597183035 597182890 2.060000e-53 220.0
26 TraesCS2D01G207800 chr4A 76.842 380 77 9 1680 2055 584938743 584938371 2.070000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G207800 chr2D 161898907 161903296 4389 False 8107.0 8107 100.0000 1 4390 1 chr2D.!!$F1 4389
1 TraesCS2D01G207800 chr2B 221086123 221090067 3944 False 3011.9 5971 97.5110 1 4390 2 chr2B.!!$F1 4389
2 TraesCS2D01G207800 chr2A 172536059 172540030 3971 False 3025.5 5884 89.5475 1 4390 2 chr2A.!!$F1 4389
3 TraesCS2D01G207800 chr6D 43048249 43049764 1515 True 321.0 385 96.8480 1918 2315 2 chr6D.!!$R1 397

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 840 1.053264 CCTCCTGGTGCTAGCATCCT 61.053 60.0 24.94 0.0 0.0 3.24 F
2059 2068 0.179062 AAGATGAGCTCCGCCATGTC 60.179 55.0 12.15 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2593 3720 0.378257 CGCCAATTGGAGAATGGACG 59.622 55.0 29.02 14.89 37.14 4.79 R
4056 5209 0.099259 CTTACATGCATGCGGGTGTG 59.901 55.0 26.53 15.65 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
365 369 2.336809 GCGCGGATCTCTACCCTG 59.663 66.667 8.83 0.00 0.00 4.45
387 391 1.274447 CCAGACATCTCACTGACAGCA 59.726 52.381 1.25 0.00 36.38 4.41
421 425 3.364441 CGGGACCACACGTCGGTA 61.364 66.667 6.17 0.00 42.99 4.02
451 455 1.228306 CCGAGGGCTAGATCTCCGT 60.228 63.158 0.00 0.00 0.00 4.69
526 530 1.841277 TCACCACCACCAGTAAACTGT 59.159 47.619 9.17 0.00 42.27 3.55
691 697 2.106683 GCTCGACCGGATTGGGTTG 61.107 63.158 9.46 0.00 44.64 3.77
749 755 9.289782 GGAGGTAAATTGATACTGCTCATTTAT 57.710 33.333 0.00 0.00 0.00 1.40
776 782 4.871806 TCCTAATAATCCTCCCCTTCCT 57.128 45.455 0.00 0.00 0.00 3.36
831 840 1.053264 CCTCCTGGTGCTAGCATCCT 61.053 60.000 24.94 0.00 0.00 3.24
841 850 1.952296 GCTAGCATCCTGATTGGGTTG 59.048 52.381 10.63 0.00 36.20 3.77
928 937 1.404986 CGCCTTCCTTGTTGGACGATA 60.405 52.381 0.00 0.00 46.14 2.92
1034 1043 4.021807 TGAGCTTGTTGTATCGTCCTTGTA 60.022 41.667 0.00 0.00 0.00 2.41
1429 1438 1.744368 CAAGATGCTGCTGGACGCT 60.744 57.895 0.00 0.00 40.11 5.07
1537 1546 3.251245 GCGATCTCGAGATACTTCTTGGA 59.749 47.826 27.36 0.00 43.02 3.53
1759 1768 1.154225 CGAGTTCCGCATGTTTGCC 60.154 57.895 0.00 0.00 46.57 4.52
1966 1975 4.792804 GAGAGCTGGCTGCACCCC 62.793 72.222 18.84 3.89 45.94 4.95
2059 2068 0.179062 AAGATGAGCTCCGCCATGTC 60.179 55.000 12.15 0.00 0.00 3.06
2176 3303 3.726517 CACTTTGTGCCGCCTCCG 61.727 66.667 0.00 0.00 0.00 4.63
2593 3720 3.267860 CTTGATCCGGCAGCGCTC 61.268 66.667 7.13 2.01 0.00 5.03
2624 3751 0.546122 AATTGGCGGCATGTCTCCTA 59.454 50.000 14.32 0.00 0.00 2.94
2931 4058 1.187567 AGCAACAGGGGTGAAATGCC 61.188 55.000 0.00 0.00 34.44 4.40
3073 4200 4.069232 TGACTGAAGGAGGCGGCG 62.069 66.667 0.51 0.51 28.23 6.46
3201 4331 1.271543 TGGCAAAGTCAGAGATGGTGG 60.272 52.381 0.00 0.00 0.00 4.61
3202 4332 1.271597 GGCAAAGTCAGAGATGGTGGT 60.272 52.381 0.00 0.00 0.00 4.16
3203 4333 1.808945 GCAAAGTCAGAGATGGTGGTG 59.191 52.381 0.00 0.00 0.00 4.17
3269 4408 9.515226 AAAGCAGTTAAGGATATTCAGTAAACA 57.485 29.630 0.00 0.00 0.00 2.83
3464 4606 2.460669 TCTGTTCTGCTGCTGATCCTA 58.539 47.619 10.09 0.00 0.00 2.94
3471 4613 3.067833 CTGCTGCTGATCCTATGATGTG 58.932 50.000 0.00 0.00 0.00 3.21
3472 4614 2.436911 TGCTGCTGATCCTATGATGTGT 59.563 45.455 0.00 0.00 0.00 3.72
3484 4626 5.305386 TCCTATGATGTGTATGGTCCTCTTG 59.695 44.000 0.00 0.00 0.00 3.02
3640 4791 1.238439 CTGCATTTGACACGGGAACT 58.762 50.000 0.00 0.00 0.00 3.01
3708 4860 1.029681 GTTTGTGGAACTGTGGACCC 58.970 55.000 0.00 0.00 38.04 4.46
3744 4897 4.745125 TCGAACTTTTAGCTGTGAAGTGAG 59.255 41.667 10.65 8.61 34.13 3.51
3832 4985 4.188247 TGCACTATCTTACATATCGGGC 57.812 45.455 0.00 0.00 0.00 6.13
3835 4988 4.627467 GCACTATCTTACATATCGGGCAAG 59.373 45.833 0.00 0.00 0.00 4.01
3836 4989 5.566826 GCACTATCTTACATATCGGGCAAGA 60.567 44.000 0.00 0.00 0.00 3.02
3837 4990 6.634805 CACTATCTTACATATCGGGCAAGAT 58.365 40.000 0.00 0.00 38.92 2.40
3838 4991 7.099764 CACTATCTTACATATCGGGCAAGATT 58.900 38.462 0.00 0.00 37.23 2.40
3839 4992 7.604164 CACTATCTTACATATCGGGCAAGATTT 59.396 37.037 0.00 0.00 37.23 2.17
3840 4993 8.157476 ACTATCTTACATATCGGGCAAGATTTT 58.843 33.333 0.00 0.00 37.23 1.82
3841 4994 7.823745 ATCTTACATATCGGGCAAGATTTTT 57.176 32.000 0.17 0.00 33.28 1.94
3842 4995 8.918202 ATCTTACATATCGGGCAAGATTTTTA 57.082 30.769 0.17 0.00 33.28 1.52
3843 4996 8.149973 TCTTACATATCGGGCAAGATTTTTAC 57.850 34.615 0.17 0.00 32.39 2.01
3844 4997 7.990886 TCTTACATATCGGGCAAGATTTTTACT 59.009 33.333 0.17 0.00 32.39 2.24
3845 4998 8.514330 TTACATATCGGGCAAGATTTTTACTT 57.486 30.769 0.17 0.00 32.39 2.24
3847 5000 7.257722 ACATATCGGGCAAGATTTTTACTTTG 58.742 34.615 0.17 0.00 32.39 2.77
3848 5001 5.722021 ATCGGGCAAGATTTTTACTTTGT 57.278 34.783 0.00 0.00 0.00 2.83
3849 5002 6.827586 ATCGGGCAAGATTTTTACTTTGTA 57.172 33.333 0.00 0.00 0.00 2.41
3850 5003 6.004408 TCGGGCAAGATTTTTACTTTGTAC 57.996 37.500 0.00 0.00 0.00 2.90
3852 5005 6.072893 TCGGGCAAGATTTTTACTTTGTACTC 60.073 38.462 0.00 0.00 0.00 2.59
3853 5006 6.387465 GGGCAAGATTTTTACTTTGTACTCC 58.613 40.000 0.00 0.00 0.00 3.85
3854 5007 6.387465 GGCAAGATTTTTACTTTGTACTCCC 58.613 40.000 0.00 0.00 0.00 4.30
3855 5008 6.015772 GGCAAGATTTTTACTTTGTACTCCCA 60.016 38.462 0.00 0.00 0.00 4.37
3856 5009 7.309805 GGCAAGATTTTTACTTTGTACTCCCAT 60.310 37.037 0.00 0.00 0.00 4.00
3857 5010 7.755373 GCAAGATTTTTACTTTGTACTCCCATC 59.245 37.037 0.00 0.00 0.00 3.51
3858 5011 8.792633 CAAGATTTTTACTTTGTACTCCCATCA 58.207 33.333 0.00 0.00 0.00 3.07
3859 5012 9.533831 AAGATTTTTACTTTGTACTCCCATCAT 57.466 29.630 0.00 0.00 0.00 2.45
3860 5013 9.533831 AGATTTTTACTTTGTACTCCCATCATT 57.466 29.630 0.00 0.00 0.00 2.57
3884 5037 7.741554 TTTTTATACAAGGCCATAAACCCAT 57.258 32.000 5.01 0.00 0.00 4.00
3885 5038 8.840200 TTTTTATACAAGGCCATAAACCCATA 57.160 30.769 5.01 0.00 0.00 2.74
3886 5039 9.440761 TTTTTATACAAGGCCATAAACCCATAT 57.559 29.630 5.01 0.00 0.00 1.78
3887 5040 9.440761 TTTTATACAAGGCCATAAACCCATATT 57.559 29.630 5.01 0.00 0.00 1.28
3889 5042 9.523168 TTATACAAGGCCATAAACCCATATTAC 57.477 33.333 5.01 0.00 0.00 1.89
3890 5043 5.772004 ACAAGGCCATAAACCCATATTACA 58.228 37.500 5.01 0.00 0.00 2.41
3891 5044 5.833131 ACAAGGCCATAAACCCATATTACAG 59.167 40.000 5.01 0.00 0.00 2.74
3892 5045 4.998051 AGGCCATAAACCCATATTACAGG 58.002 43.478 5.01 0.00 0.00 4.00
3893 5046 4.418863 AGGCCATAAACCCATATTACAGGT 59.581 41.667 5.01 0.00 34.60 4.00
3894 5047 5.613544 AGGCCATAAACCCATATTACAGGTA 59.386 40.000 5.01 0.00 32.21 3.08
3895 5048 6.277044 AGGCCATAAACCCATATTACAGGTAT 59.723 38.462 5.01 0.00 32.21 2.73
3896 5049 6.602009 GGCCATAAACCCATATTACAGGTATC 59.398 42.308 0.00 0.00 32.21 2.24
3897 5050 7.172342 GCCATAAACCCATATTACAGGTATCA 58.828 38.462 0.00 0.00 32.21 2.15
3898 5051 7.668052 GCCATAAACCCATATTACAGGTATCAA 59.332 37.037 0.00 0.00 32.21 2.57
3899 5052 9.581289 CCATAAACCCATATTACAGGTATCAAA 57.419 33.333 0.00 0.00 32.21 2.69
3903 5056 9.847224 AAACCCATATTACAGGTATCAAAGTAG 57.153 33.333 0.00 0.00 32.21 2.57
3904 5057 8.792830 ACCCATATTACAGGTATCAAAGTAGA 57.207 34.615 0.00 0.00 30.13 2.59
3905 5058 9.220906 ACCCATATTACAGGTATCAAAGTAGAA 57.779 33.333 0.00 0.00 30.13 2.10
3914 5067 9.686683 ACAGGTATCAAAGTAGAAATTAATGCT 57.313 29.630 0.00 0.00 0.00 3.79
3942 5095 9.359653 ACTTAAGCCAATATTGCAAGATAATCT 57.640 29.630 7.05 1.90 0.00 2.40
3946 5099 9.538508 AAGCCAATATTGCAAGATAATCTTTTC 57.461 29.630 7.05 0.00 33.78 2.29
3947 5100 8.921205 AGCCAATATTGCAAGATAATCTTTTCT 58.079 29.630 7.05 0.00 33.78 2.52
3948 5101 9.189723 GCCAATATTGCAAGATAATCTTTTCTC 57.810 33.333 7.05 0.00 33.78 2.87
3949 5102 9.688592 CCAATATTGCAAGATAATCTTTTCTCC 57.311 33.333 7.05 0.00 33.78 3.71
3952 5105 6.668541 TTGCAAGATAATCTTTTCTCCTCG 57.331 37.500 0.00 0.00 33.78 4.63
3953 5106 4.572389 TGCAAGATAATCTTTTCTCCTCGC 59.428 41.667 0.00 0.00 33.78 5.03
3954 5107 4.813697 GCAAGATAATCTTTTCTCCTCGCT 59.186 41.667 0.00 0.00 33.78 4.93
3955 5108 5.295540 GCAAGATAATCTTTTCTCCTCGCTT 59.704 40.000 0.00 0.00 33.78 4.68
3956 5109 6.713520 CAAGATAATCTTTTCTCCTCGCTTG 58.286 40.000 0.00 0.00 33.78 4.01
3957 5110 6.227298 AGATAATCTTTTCTCCTCGCTTGA 57.773 37.500 0.00 0.00 0.00 3.02
3958 5111 6.045955 AGATAATCTTTTCTCCTCGCTTGAC 58.954 40.000 0.00 0.00 0.00 3.18
3959 5112 2.065993 TCTTTTCTCCTCGCTTGACG 57.934 50.000 0.00 0.00 45.62 4.35
3960 5113 1.340248 TCTTTTCTCCTCGCTTGACGT 59.660 47.619 0.00 0.00 44.19 4.34
3961 5114 1.457303 CTTTTCTCCTCGCTTGACGTG 59.543 52.381 0.00 0.00 44.19 4.49
3962 5115 0.387929 TTTCTCCTCGCTTGACGTGT 59.612 50.000 0.00 0.00 44.19 4.49
3963 5116 0.387929 TTCTCCTCGCTTGACGTGTT 59.612 50.000 0.00 0.00 44.19 3.32
3964 5117 1.241165 TCTCCTCGCTTGACGTGTTA 58.759 50.000 0.00 0.00 44.19 2.41
3965 5118 1.610038 TCTCCTCGCTTGACGTGTTAA 59.390 47.619 0.00 0.00 44.19 2.01
3966 5119 2.230508 TCTCCTCGCTTGACGTGTTAAT 59.769 45.455 0.00 0.00 44.19 1.40
3967 5120 2.993899 CTCCTCGCTTGACGTGTTAATT 59.006 45.455 0.00 0.00 44.19 1.40
3968 5121 4.082625 TCTCCTCGCTTGACGTGTTAATTA 60.083 41.667 0.00 0.00 44.19 1.40
3969 5122 4.558178 TCCTCGCTTGACGTGTTAATTAA 58.442 39.130 0.00 0.00 44.19 1.40
3970 5123 5.172934 TCCTCGCTTGACGTGTTAATTAAT 58.827 37.500 0.31 0.00 44.19 1.40
3971 5124 5.640357 TCCTCGCTTGACGTGTTAATTAATT 59.360 36.000 5.89 5.89 44.19 1.40
3972 5125 6.148150 TCCTCGCTTGACGTGTTAATTAATTT 59.852 34.615 5.91 0.00 44.19 1.82
3973 5126 6.248420 CCTCGCTTGACGTGTTAATTAATTTG 59.752 38.462 5.91 0.00 44.19 2.32
3974 5127 6.660722 TCGCTTGACGTGTTAATTAATTTGT 58.339 32.000 5.91 0.44 44.19 2.83
3975 5128 7.794880 TCGCTTGACGTGTTAATTAATTTGTA 58.205 30.769 5.91 0.00 44.19 2.41
3976 5129 8.444715 TCGCTTGACGTGTTAATTAATTTGTAT 58.555 29.630 5.91 0.00 44.19 2.29
3977 5130 9.057365 CGCTTGACGTGTTAATTAATTTGTATT 57.943 29.630 5.91 0.00 36.87 1.89
3992 5145 9.737427 TTAATTTGTATTTTTCTCTTCAACGCA 57.263 25.926 0.00 0.00 0.00 5.24
3993 5146 7.623268 ATTTGTATTTTTCTCTTCAACGCAC 57.377 32.000 0.00 0.00 0.00 5.34
3994 5147 5.743026 TGTATTTTTCTCTTCAACGCACA 57.257 34.783 0.00 0.00 0.00 4.57
3995 5148 5.747565 TGTATTTTTCTCTTCAACGCACAG 58.252 37.500 0.00 0.00 0.00 3.66
3996 5149 4.900635 ATTTTTCTCTTCAACGCACAGT 57.099 36.364 0.00 0.00 0.00 3.55
3997 5150 6.480651 TGTATTTTTCTCTTCAACGCACAGTA 59.519 34.615 0.00 0.00 0.00 2.74
3998 5151 5.804692 TTTTTCTCTTCAACGCACAGTAA 57.195 34.783 0.00 0.00 0.00 2.24
3999 5152 5.403897 TTTTCTCTTCAACGCACAGTAAG 57.596 39.130 0.00 0.00 0.00 2.34
4000 5153 4.316205 TTCTCTTCAACGCACAGTAAGA 57.684 40.909 0.00 0.00 0.00 2.10
4001 5154 3.639538 TCTCTTCAACGCACAGTAAGAC 58.360 45.455 0.00 0.00 0.00 3.01
4002 5155 3.067601 TCTCTTCAACGCACAGTAAGACA 59.932 43.478 0.00 0.00 0.00 3.41
4003 5156 3.787785 TCTTCAACGCACAGTAAGACAA 58.212 40.909 0.00 0.00 0.00 3.18
4004 5157 4.377021 TCTTCAACGCACAGTAAGACAAT 58.623 39.130 0.00 0.00 0.00 2.71
4005 5158 4.447724 TCTTCAACGCACAGTAAGACAATC 59.552 41.667 0.00 0.00 0.00 2.67
4006 5159 3.064207 TCAACGCACAGTAAGACAATCC 58.936 45.455 0.00 0.00 0.00 3.01
4007 5160 3.067106 CAACGCACAGTAAGACAATCCT 58.933 45.455 0.00 0.00 0.00 3.24
4008 5161 2.960819 ACGCACAGTAAGACAATCCTC 58.039 47.619 0.00 0.00 0.00 3.71
4009 5162 2.563179 ACGCACAGTAAGACAATCCTCT 59.437 45.455 0.00 0.00 0.00 3.69
4010 5163 3.182967 CGCACAGTAAGACAATCCTCTC 58.817 50.000 0.00 0.00 0.00 3.20
4011 5164 3.367395 CGCACAGTAAGACAATCCTCTCA 60.367 47.826 0.00 0.00 0.00 3.27
4012 5165 3.929610 GCACAGTAAGACAATCCTCTCAC 59.070 47.826 0.00 0.00 0.00 3.51
4013 5166 4.322349 GCACAGTAAGACAATCCTCTCACT 60.322 45.833 0.00 0.00 0.00 3.41
4014 5167 5.406649 CACAGTAAGACAATCCTCTCACTC 58.593 45.833 0.00 0.00 0.00 3.51
4015 5168 4.464597 ACAGTAAGACAATCCTCTCACTCC 59.535 45.833 0.00 0.00 0.00 3.85
4016 5169 4.709397 CAGTAAGACAATCCTCTCACTCCT 59.291 45.833 0.00 0.00 0.00 3.69
4017 5170 5.186797 CAGTAAGACAATCCTCTCACTCCTT 59.813 44.000 0.00 0.00 0.00 3.36
4018 5171 4.550076 AAGACAATCCTCTCACTCCTTG 57.450 45.455 0.00 0.00 0.00 3.61
4019 5172 3.515562 AGACAATCCTCTCACTCCTTGT 58.484 45.455 0.00 0.00 0.00 3.16
4020 5173 3.906846 AGACAATCCTCTCACTCCTTGTT 59.093 43.478 0.00 0.00 0.00 2.83
4021 5174 3.999663 GACAATCCTCTCACTCCTTGTTG 59.000 47.826 0.00 0.00 0.00 3.33
4022 5175 3.244700 ACAATCCTCTCACTCCTTGTTGG 60.245 47.826 0.00 0.00 37.10 3.77
4023 5176 2.103153 TCCTCTCACTCCTTGTTGGT 57.897 50.000 0.00 0.00 37.07 3.67
4024 5177 2.408565 TCCTCTCACTCCTTGTTGGTT 58.591 47.619 0.00 0.00 37.07 3.67
4025 5178 2.104792 TCCTCTCACTCCTTGTTGGTTG 59.895 50.000 0.00 0.00 37.07 3.77
4026 5179 2.104792 CCTCTCACTCCTTGTTGGTTGA 59.895 50.000 0.00 0.00 37.07 3.18
4027 5180 3.244700 CCTCTCACTCCTTGTTGGTTGAT 60.245 47.826 0.00 0.00 37.07 2.57
4028 5181 4.392940 CTCTCACTCCTTGTTGGTTGATT 58.607 43.478 0.00 0.00 37.07 2.57
4029 5182 5.513094 CCTCTCACTCCTTGTTGGTTGATTA 60.513 44.000 0.00 0.00 37.07 1.75
4030 5183 5.935945 TCTCACTCCTTGTTGGTTGATTAA 58.064 37.500 0.00 0.00 37.07 1.40
4031 5184 6.542821 TCTCACTCCTTGTTGGTTGATTAAT 58.457 36.000 0.00 0.00 37.07 1.40
4032 5185 7.685481 TCTCACTCCTTGTTGGTTGATTAATA 58.315 34.615 0.00 0.00 37.07 0.98
4033 5186 8.328758 TCTCACTCCTTGTTGGTTGATTAATAT 58.671 33.333 0.00 0.00 37.07 1.28
4034 5187 8.279970 TCACTCCTTGTTGGTTGATTAATATG 57.720 34.615 0.00 0.00 37.07 1.78
4035 5188 7.339212 TCACTCCTTGTTGGTTGATTAATATGG 59.661 37.037 0.00 0.00 37.07 2.74
4036 5189 6.096846 ACTCCTTGTTGGTTGATTAATATGGC 59.903 38.462 0.00 0.00 37.07 4.40
4037 5190 5.067153 TCCTTGTTGGTTGATTAATATGGCG 59.933 40.000 0.00 0.00 37.07 5.69
4038 5191 4.300189 TGTTGGTTGATTAATATGGCGC 57.700 40.909 0.00 0.00 0.00 6.53
4039 5192 3.696548 TGTTGGTTGATTAATATGGCGCA 59.303 39.130 10.83 0.00 0.00 6.09
4040 5193 4.340666 TGTTGGTTGATTAATATGGCGCAT 59.659 37.500 10.83 3.40 0.00 4.73
4041 5194 4.502171 TGGTTGATTAATATGGCGCATG 57.498 40.909 10.83 0.00 0.00 4.06
4042 5195 3.244976 GGTTGATTAATATGGCGCATGC 58.755 45.455 10.83 7.91 41.71 4.06
4043 5196 3.305267 GGTTGATTAATATGGCGCATGCA 60.305 43.478 19.57 0.00 45.35 3.96
4044 5197 4.297510 GTTGATTAATATGGCGCATGCAA 58.702 39.130 19.57 2.47 45.35 4.08
4045 5198 4.581077 TGATTAATATGGCGCATGCAAA 57.419 36.364 19.57 2.05 45.35 3.68
4046 5199 4.297510 TGATTAATATGGCGCATGCAAAC 58.702 39.130 19.57 7.42 45.35 2.93
4047 5200 3.790152 TTAATATGGCGCATGCAAACA 57.210 38.095 19.57 13.23 45.35 2.83
4048 5201 2.669300 AATATGGCGCATGCAAACAA 57.331 40.000 19.57 0.00 45.35 2.83
4049 5202 2.669300 ATATGGCGCATGCAAACAAA 57.331 40.000 19.57 0.00 45.35 2.83
4050 5203 1.707632 TATGGCGCATGCAAACAAAC 58.292 45.000 19.57 0.00 45.35 2.93
4051 5204 0.950071 ATGGCGCATGCAAACAAACC 60.950 50.000 19.57 7.24 45.35 3.27
4052 5205 1.300853 GGCGCATGCAAACAAACCT 60.301 52.632 19.57 0.00 45.35 3.50
4053 5206 0.879839 GGCGCATGCAAACAAACCTT 60.880 50.000 19.57 0.00 45.35 3.50
4054 5207 0.508213 GCGCATGCAAACAAACCTTC 59.492 50.000 19.57 0.00 42.15 3.46
4055 5208 1.869342 GCGCATGCAAACAAACCTTCT 60.869 47.619 19.57 0.00 42.15 2.85
4056 5209 2.053627 CGCATGCAAACAAACCTTCTC 58.946 47.619 19.57 0.00 0.00 2.87
4057 5210 2.543445 CGCATGCAAACAAACCTTCTCA 60.543 45.455 19.57 0.00 0.00 3.27
4058 5211 2.796593 GCATGCAAACAAACCTTCTCAC 59.203 45.455 14.21 0.00 0.00 3.51
4059 5212 3.737663 GCATGCAAACAAACCTTCTCACA 60.738 43.478 14.21 0.00 0.00 3.58
4060 5213 3.502191 TGCAAACAAACCTTCTCACAC 57.498 42.857 0.00 0.00 0.00 3.82
4061 5214 2.165437 TGCAAACAAACCTTCTCACACC 59.835 45.455 0.00 0.00 0.00 4.16
4062 5215 2.481276 GCAAACAAACCTTCTCACACCC 60.481 50.000 0.00 0.00 0.00 4.61
4063 5216 1.675552 AACAAACCTTCTCACACCCG 58.324 50.000 0.00 0.00 0.00 5.28
4064 5217 0.818040 ACAAACCTTCTCACACCCGC 60.818 55.000 0.00 0.00 0.00 6.13
4065 5218 0.817634 CAAACCTTCTCACACCCGCA 60.818 55.000 0.00 0.00 0.00 5.69
4066 5219 0.110486 AAACCTTCTCACACCCGCAT 59.890 50.000 0.00 0.00 0.00 4.73
4067 5220 0.606401 AACCTTCTCACACCCGCATG 60.606 55.000 0.00 0.00 0.00 4.06
4068 5221 2.401766 CCTTCTCACACCCGCATGC 61.402 63.158 7.91 7.91 0.00 4.06
4069 5222 1.672030 CTTCTCACACCCGCATGCA 60.672 57.895 19.57 0.00 0.00 3.96
4070 5223 1.002257 TTCTCACACCCGCATGCAT 60.002 52.632 19.57 0.00 0.00 3.96
4071 5224 1.307355 TTCTCACACCCGCATGCATG 61.307 55.000 22.70 22.70 0.00 4.06
4072 5225 2.033911 TCACACCCGCATGCATGT 59.966 55.556 26.79 15.38 0.00 3.21
4073 5226 0.744057 CTCACACCCGCATGCATGTA 60.744 55.000 26.79 7.00 0.00 2.29
4074 5227 0.322008 TCACACCCGCATGCATGTAA 60.322 50.000 26.79 1.74 0.00 2.41
4075 5228 0.099259 CACACCCGCATGCATGTAAG 59.901 55.000 26.79 17.80 0.00 2.34
4076 5229 1.031571 ACACCCGCATGCATGTAAGG 61.032 55.000 26.79 24.31 0.00 2.69
4077 5230 1.453745 ACCCGCATGCATGTAAGGG 60.454 57.895 34.70 34.70 41.47 3.95
4078 5231 2.195567 CCCGCATGCATGTAAGGGG 61.196 63.158 31.78 27.76 36.32 4.79
4079 5232 2.723746 CGCATGCATGTAAGGGGC 59.276 61.111 26.79 10.49 0.00 5.80
4080 5233 2.120282 CGCATGCATGTAAGGGGCA 61.120 57.895 26.79 0.00 42.43 5.36
4082 5235 0.754472 GCATGCATGTAAGGGGCATT 59.246 50.000 26.79 0.00 45.34 3.56
4083 5236 1.962807 GCATGCATGTAAGGGGCATTA 59.037 47.619 26.79 0.00 45.34 1.90
4084 5237 2.364970 GCATGCATGTAAGGGGCATTAA 59.635 45.455 26.79 0.00 45.34 1.40
4085 5238 3.007182 GCATGCATGTAAGGGGCATTAAT 59.993 43.478 26.79 0.00 45.34 1.40
4086 5239 4.562082 CATGCATGTAAGGGGCATTAATG 58.438 43.478 18.91 11.27 45.34 1.90
4087 5240 3.641046 TGCATGTAAGGGGCATTAATGT 58.359 40.909 16.61 0.00 31.58 2.71
4088 5241 3.636300 TGCATGTAAGGGGCATTAATGTC 59.364 43.478 16.61 14.31 31.58 3.06
4097 5250 2.365582 GGCATTAATGTCCTCGGTTGT 58.634 47.619 16.61 0.00 0.00 3.32
4098 5251 2.752903 GGCATTAATGTCCTCGGTTGTT 59.247 45.455 16.61 0.00 0.00 2.83
4099 5252 3.942748 GGCATTAATGTCCTCGGTTGTTA 59.057 43.478 16.61 0.00 0.00 2.41
4100 5253 4.035208 GGCATTAATGTCCTCGGTTGTTAG 59.965 45.833 16.61 0.00 0.00 2.34
4101 5254 4.634443 GCATTAATGTCCTCGGTTGTTAGT 59.366 41.667 16.61 0.00 0.00 2.24
4102 5255 5.813672 GCATTAATGTCCTCGGTTGTTAGTA 59.186 40.000 16.61 0.00 0.00 1.82
4103 5256 6.482308 GCATTAATGTCCTCGGTTGTTAGTAT 59.518 38.462 16.61 0.00 0.00 2.12
4104 5257 7.307219 GCATTAATGTCCTCGGTTGTTAGTATC 60.307 40.741 16.61 0.00 0.00 2.24
4105 5258 5.670792 AATGTCCTCGGTTGTTAGTATCA 57.329 39.130 0.00 0.00 0.00 2.15
4106 5259 4.713824 TGTCCTCGGTTGTTAGTATCAG 57.286 45.455 0.00 0.00 0.00 2.90
4107 5260 4.338012 TGTCCTCGGTTGTTAGTATCAGA 58.662 43.478 0.00 0.00 0.00 3.27
4108 5261 4.157289 TGTCCTCGGTTGTTAGTATCAGAC 59.843 45.833 0.00 0.00 0.00 3.51
4109 5262 4.157289 GTCCTCGGTTGTTAGTATCAGACA 59.843 45.833 0.00 0.00 0.00 3.41
4110 5263 4.768448 TCCTCGGTTGTTAGTATCAGACAA 59.232 41.667 0.00 0.00 0.00 3.18
4111 5264 5.244402 TCCTCGGTTGTTAGTATCAGACAAA 59.756 40.000 0.00 0.00 35.31 2.83
4112 5265 5.347907 CCTCGGTTGTTAGTATCAGACAAAC 59.652 44.000 0.00 0.00 37.57 2.93
4113 5266 6.092955 TCGGTTGTTAGTATCAGACAAACT 57.907 37.500 0.00 0.00 38.50 2.66
4114 5267 6.518493 TCGGTTGTTAGTATCAGACAAACTT 58.482 36.000 0.00 0.00 38.50 2.66
4115 5268 6.987992 TCGGTTGTTAGTATCAGACAAACTTT 59.012 34.615 0.00 0.00 38.50 2.66
4116 5269 8.143193 TCGGTTGTTAGTATCAGACAAACTTTA 58.857 33.333 0.00 0.00 38.50 1.85
4117 5270 8.932791 CGGTTGTTAGTATCAGACAAACTTTAT 58.067 33.333 0.00 0.00 38.50 1.40
4130 5283 9.329913 CAGACAAACTTTATCAATTTTACCTCG 57.670 33.333 0.00 0.00 0.00 4.63
4131 5284 9.280174 AGACAAACTTTATCAATTTTACCTCGA 57.720 29.630 0.00 0.00 0.00 4.04
4142 5295 8.786826 TCAATTTTACCTCGATTGATGTTAGT 57.213 30.769 0.00 0.00 35.51 2.24
4143 5296 8.664798 TCAATTTTACCTCGATTGATGTTAGTG 58.335 33.333 0.00 0.00 35.51 2.74
4144 5297 6.978343 TTTTACCTCGATTGATGTTAGTGG 57.022 37.500 0.00 0.00 0.00 4.00
4145 5298 2.906354 ACCTCGATTGATGTTAGTGGC 58.094 47.619 0.00 0.00 0.00 5.01
4146 5299 2.213499 CCTCGATTGATGTTAGTGGCC 58.787 52.381 0.00 0.00 0.00 5.36
4147 5300 2.158900 CCTCGATTGATGTTAGTGGCCT 60.159 50.000 3.32 0.00 0.00 5.19
4148 5301 3.535561 CTCGATTGATGTTAGTGGCCTT 58.464 45.455 3.32 0.00 0.00 4.35
4149 5302 3.270027 TCGATTGATGTTAGTGGCCTTG 58.730 45.455 3.32 0.00 0.00 3.61
4150 5303 3.009723 CGATTGATGTTAGTGGCCTTGT 58.990 45.455 3.32 0.00 0.00 3.16
4151 5304 4.081365 TCGATTGATGTTAGTGGCCTTGTA 60.081 41.667 3.32 0.00 0.00 2.41
4152 5305 4.816385 CGATTGATGTTAGTGGCCTTGTAT 59.184 41.667 3.32 0.00 0.00 2.29
4153 5306 5.989168 CGATTGATGTTAGTGGCCTTGTATA 59.011 40.000 3.32 0.00 0.00 1.47
4154 5307 6.146184 CGATTGATGTTAGTGGCCTTGTATAG 59.854 42.308 3.32 0.00 0.00 1.31
4155 5308 4.703897 TGATGTTAGTGGCCTTGTATAGC 58.296 43.478 3.32 0.00 0.00 2.97
4156 5309 4.408921 TGATGTTAGTGGCCTTGTATAGCT 59.591 41.667 3.32 0.00 0.00 3.32
4157 5310 4.137116 TGTTAGTGGCCTTGTATAGCTG 57.863 45.455 3.32 0.00 0.00 4.24
4158 5311 3.517901 TGTTAGTGGCCTTGTATAGCTGT 59.482 43.478 3.32 0.00 0.00 4.40
4159 5312 4.712829 TGTTAGTGGCCTTGTATAGCTGTA 59.287 41.667 3.32 0.00 0.00 2.74
4160 5313 5.188163 TGTTAGTGGCCTTGTATAGCTGTAA 59.812 40.000 3.32 0.00 0.00 2.41
4161 5314 4.138487 AGTGGCCTTGTATAGCTGTAAC 57.862 45.455 3.32 0.00 0.00 2.50
4162 5315 3.775316 AGTGGCCTTGTATAGCTGTAACT 59.225 43.478 3.32 0.00 0.00 2.24
4163 5316 4.225267 AGTGGCCTTGTATAGCTGTAACTT 59.775 41.667 3.32 0.00 0.00 2.66
4164 5317 5.424252 AGTGGCCTTGTATAGCTGTAACTTA 59.576 40.000 3.32 0.00 0.00 2.24
4165 5318 6.099845 AGTGGCCTTGTATAGCTGTAACTTAT 59.900 38.462 3.32 0.00 0.00 1.73
4166 5319 7.289317 AGTGGCCTTGTATAGCTGTAACTTATA 59.711 37.037 3.32 0.00 0.00 0.98
4167 5320 7.929785 GTGGCCTTGTATAGCTGTAACTTATAA 59.070 37.037 3.32 0.00 0.00 0.98
4168 5321 8.656806 TGGCCTTGTATAGCTGTAACTTATAAT 58.343 33.333 3.32 0.00 0.00 1.28
4169 5322 9.503399 GGCCTTGTATAGCTGTAACTTATAATT 57.497 33.333 0.00 0.00 0.00 1.40
4179 5332 9.477484 AGCTGTAACTTATAATTTCGATAGTGG 57.523 33.333 0.00 0.00 37.40 4.00
4180 5333 8.221766 GCTGTAACTTATAATTTCGATAGTGGC 58.778 37.037 0.00 0.00 37.40 5.01
4181 5334 8.597662 TGTAACTTATAATTTCGATAGTGGCC 57.402 34.615 0.00 0.00 37.40 5.36
4182 5335 8.426489 TGTAACTTATAATTTCGATAGTGGCCT 58.574 33.333 3.32 0.00 37.40 5.19
4183 5336 7.964604 AACTTATAATTTCGATAGTGGCCTC 57.035 36.000 3.32 0.00 37.40 4.70
4184 5337 6.157211 ACTTATAATTTCGATAGTGGCCTCG 58.843 40.000 3.32 4.78 36.25 4.63
4185 5338 1.583054 AATTTCGATAGTGGCCTCGC 58.417 50.000 3.32 0.00 34.94 5.03
4186 5339 0.464036 ATTTCGATAGTGGCCTCGCA 59.536 50.000 3.32 0.00 34.94 5.10
4187 5340 0.464036 TTTCGATAGTGGCCTCGCAT 59.536 50.000 3.32 0.00 34.94 4.73
4188 5341 1.324383 TTCGATAGTGGCCTCGCATA 58.676 50.000 3.32 0.00 34.94 3.14
4189 5342 1.324383 TCGATAGTGGCCTCGCATAA 58.676 50.000 3.32 0.00 34.94 1.90
4190 5343 1.684450 TCGATAGTGGCCTCGCATAAA 59.316 47.619 3.32 0.00 34.94 1.40
4191 5344 2.101750 TCGATAGTGGCCTCGCATAAAA 59.898 45.455 3.32 0.00 34.94 1.52
4192 5345 2.869801 CGATAGTGGCCTCGCATAAAAA 59.130 45.455 3.32 0.00 0.00 1.94
4217 5370 3.325135 GGAGGGAGGATATCAATTGTCGT 59.675 47.826 5.13 0.00 0.00 4.34
4220 5373 4.039730 AGGGAGGATATCAATTGTCGTGAG 59.960 45.833 5.13 0.00 0.00 3.51
4246 5399 2.137523 ACGTTCGCGAGGTAAAAATGT 58.862 42.857 9.59 0.69 44.71 2.71
4248 5401 3.365820 ACGTTCGCGAGGTAAAAATGTAG 59.634 43.478 9.59 0.00 44.71 2.74
4264 5417 4.593597 ATGTAGTTTTACGCGGAACATG 57.406 40.909 12.47 0.00 32.21 3.21
4265 5418 2.158058 TGTAGTTTTACGCGGAACATGC 59.842 45.455 12.47 0.38 32.21 4.06
4282 5435 0.104855 TGCCTCTACACATCATCGCC 59.895 55.000 0.00 0.00 0.00 5.54
4286 5439 2.205074 CTCTACACATCATCGCCCAAC 58.795 52.381 0.00 0.00 0.00 3.77
4307 5509 1.135139 GCACCTCGTAAGCTCAGATCA 59.865 52.381 0.00 0.00 37.18 2.92
4309 5511 2.164422 CACCTCGTAAGCTCAGATCACA 59.836 50.000 0.00 0.00 37.18 3.58
4311 5513 3.449018 ACCTCGTAAGCTCAGATCACATT 59.551 43.478 0.00 0.00 37.18 2.71
4312 5514 3.801050 CCTCGTAAGCTCAGATCACATTG 59.199 47.826 0.00 0.00 37.18 2.82
4313 5515 4.428209 CTCGTAAGCTCAGATCACATTGT 58.572 43.478 0.00 0.00 37.18 2.71
4314 5516 4.820897 TCGTAAGCTCAGATCACATTGTT 58.179 39.130 0.00 0.00 37.18 2.83
4315 5517 5.961272 TCGTAAGCTCAGATCACATTGTTA 58.039 37.500 0.00 0.00 37.18 2.41
4316 5518 6.036470 TCGTAAGCTCAGATCACATTGTTAG 58.964 40.000 0.00 0.00 37.18 2.34
4317 5519 5.233050 CGTAAGCTCAGATCACATTGTTAGG 59.767 44.000 0.00 0.00 0.00 2.69
4318 5520 5.426689 AAGCTCAGATCACATTGTTAGGA 57.573 39.130 0.00 0.00 0.00 2.94
4319 5521 5.627182 AGCTCAGATCACATTGTTAGGAT 57.373 39.130 0.00 0.00 0.00 3.24
4320 5522 5.366460 AGCTCAGATCACATTGTTAGGATG 58.634 41.667 0.00 0.00 0.00 3.51
4321 5523 4.024218 GCTCAGATCACATTGTTAGGATGC 60.024 45.833 0.00 0.00 0.00 3.91
4322 5524 4.454678 TCAGATCACATTGTTAGGATGCC 58.545 43.478 0.00 0.00 0.00 4.40
4323 5525 4.164796 TCAGATCACATTGTTAGGATGCCT 59.835 41.667 0.00 0.00 37.71 4.75
4324 5526 5.366477 TCAGATCACATTGTTAGGATGCCTA 59.634 40.000 0.00 0.00 34.61 3.93
4325 5527 5.468072 CAGATCACATTGTTAGGATGCCTAC 59.532 44.000 0.00 0.00 35.63 3.18
4326 5528 5.367937 AGATCACATTGTTAGGATGCCTACT 59.632 40.000 0.00 0.00 35.63 2.57
4327 5529 5.023533 TCACATTGTTAGGATGCCTACTC 57.976 43.478 0.00 0.00 35.63 2.59
4328 5530 4.130118 CACATTGTTAGGATGCCTACTCC 58.870 47.826 0.00 0.00 35.63 3.85
4329 5531 4.040755 ACATTGTTAGGATGCCTACTCCT 58.959 43.478 0.00 0.00 45.22 3.69
4330 5532 4.475016 ACATTGTTAGGATGCCTACTCCTT 59.525 41.667 0.00 0.00 40.29 3.36
4331 5533 4.755266 TTGTTAGGATGCCTACTCCTTC 57.245 45.455 0.00 0.00 40.29 3.46
4332 5534 3.039011 TGTTAGGATGCCTACTCCTTCC 58.961 50.000 0.00 0.00 40.29 3.46
4333 5535 1.996798 TAGGATGCCTACTCCTTCCG 58.003 55.000 0.00 0.00 40.29 4.30
4334 5536 0.032017 AGGATGCCTACTCCTTCCGT 60.032 55.000 0.00 0.00 40.29 4.69
4335 5537 0.831307 GGATGCCTACTCCTTCCGTT 59.169 55.000 0.00 0.00 0.00 4.44
4336 5538 1.473434 GGATGCCTACTCCTTCCGTTG 60.473 57.143 0.00 0.00 0.00 4.10
4337 5539 1.207329 GATGCCTACTCCTTCCGTTGT 59.793 52.381 0.00 0.00 0.00 3.32
4338 5540 1.053424 TGCCTACTCCTTCCGTTGTT 58.947 50.000 0.00 0.00 0.00 2.83
4339 5541 1.270625 TGCCTACTCCTTCCGTTGTTG 60.271 52.381 0.00 0.00 0.00 3.33
4340 5542 1.001633 GCCTACTCCTTCCGTTGTTGA 59.998 52.381 0.00 0.00 0.00 3.18
4341 5543 2.685100 CCTACTCCTTCCGTTGTTGAC 58.315 52.381 0.00 0.00 0.00 3.18
4342 5544 2.299297 CCTACTCCTTCCGTTGTTGACT 59.701 50.000 0.00 0.00 0.00 3.41
4343 5545 2.528041 ACTCCTTCCGTTGTTGACTC 57.472 50.000 0.00 0.00 0.00 3.36
4344 5546 2.040178 ACTCCTTCCGTTGTTGACTCT 58.960 47.619 0.00 0.00 0.00 3.24
4345 5547 2.434702 ACTCCTTCCGTTGTTGACTCTT 59.565 45.455 0.00 0.00 0.00 2.85
4346 5548 3.060602 CTCCTTCCGTTGTTGACTCTTC 58.939 50.000 0.00 0.00 0.00 2.87
4347 5549 2.698797 TCCTTCCGTTGTTGACTCTTCT 59.301 45.455 0.00 0.00 0.00 2.85
4348 5550 3.060602 CCTTCCGTTGTTGACTCTTCTC 58.939 50.000 0.00 0.00 0.00 2.87
4349 5551 3.243907 CCTTCCGTTGTTGACTCTTCTCT 60.244 47.826 0.00 0.00 0.00 3.10
4350 5552 4.372656 CTTCCGTTGTTGACTCTTCTCTT 58.627 43.478 0.00 0.00 0.00 2.85
4351 5553 3.717707 TCCGTTGTTGACTCTTCTCTTG 58.282 45.455 0.00 0.00 0.00 3.02
4352 5554 3.132289 TCCGTTGTTGACTCTTCTCTTGT 59.868 43.478 0.00 0.00 0.00 3.16
4353 5555 3.871594 CCGTTGTTGACTCTTCTCTTGTT 59.128 43.478 0.00 0.00 0.00 2.83
4354 5556 5.047847 CCGTTGTTGACTCTTCTCTTGTTA 58.952 41.667 0.00 0.00 0.00 2.41
4355 5557 5.522460 CCGTTGTTGACTCTTCTCTTGTTAA 59.478 40.000 0.00 0.00 0.00 2.01
4356 5558 6.202954 CCGTTGTTGACTCTTCTCTTGTTAAT 59.797 38.462 0.00 0.00 0.00 1.40
4357 5559 7.384115 CCGTTGTTGACTCTTCTCTTGTTAATA 59.616 37.037 0.00 0.00 0.00 0.98
4358 5560 8.761497 CGTTGTTGACTCTTCTCTTGTTAATAA 58.239 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.716195 CATGGTGGACCGCCCTCA 61.716 66.667 21.61 3.09 39.43 3.86
365 369 0.610174 TGTCAGTGAGATGTCTGGGC 59.390 55.000 0.00 0.00 33.13 5.36
436 440 1.152440 CCCACGGAGATCTAGCCCT 60.152 63.158 0.00 0.00 0.00 5.19
526 530 4.779733 GCGGGGAGGGAGGACTCA 62.780 72.222 1.32 0.00 39.27 3.41
638 644 3.430497 TCCTCCTCCTCCTCCCGG 61.430 72.222 0.00 0.00 0.00 5.73
691 697 1.636003 GATCCACCCCTATCCAATCCC 59.364 57.143 0.00 0.00 0.00 3.85
752 758 5.372959 AGGAAGGGGAGGATTATTAGGAAAC 59.627 44.000 0.00 0.00 0.00 2.78
831 840 1.559368 CAATCAGCCCAACCCAATCA 58.441 50.000 0.00 0.00 0.00 2.57
884 893 0.614697 AAAGGAAAGATTGGGGCCGG 60.615 55.000 0.00 0.00 0.00 6.13
894 903 2.552373 GGAAGGCGAGGAAAAGGAAAGA 60.552 50.000 0.00 0.00 0.00 2.52
1192 1201 4.148825 ACGTCATCGGCCAGCTCC 62.149 66.667 2.24 0.00 41.85 4.70
1466 1475 4.477975 GACGACGTCAGCCGGGAG 62.478 72.222 22.66 0.00 42.24 4.30
1759 1768 2.954753 GCACGGACGCACCTTGAAG 61.955 63.158 9.30 0.00 39.86 3.02
1966 1975 1.667830 CCTGGTGCGGTACTGTGTG 60.668 63.158 3.10 0.00 0.00 3.82
2176 3303 1.524621 CACGGCAGATGGTGATCCC 60.525 63.158 0.00 0.00 36.25 3.85
2270 3397 2.575532 CAAGCCAAGGTCTTCAACTGA 58.424 47.619 0.00 0.00 0.00 3.41
2272 3399 1.133668 AGCAAGCCAAGGTCTTCAACT 60.134 47.619 0.00 0.00 0.00 3.16
2593 3720 0.378257 CGCCAATTGGAGAATGGACG 59.622 55.000 29.02 14.89 37.14 4.79
3073 4200 3.882888 TGGTTTCATCAACTGTGGACTTC 59.117 43.478 0.00 0.00 35.46 3.01
3201 4331 4.259770 CGGATGCTTTGTTTGTTTCAACAC 60.260 41.667 0.00 0.00 38.92 3.32
3202 4332 3.862267 CGGATGCTTTGTTTGTTTCAACA 59.138 39.130 0.00 0.00 37.08 3.33
3203 4333 3.245048 CCGGATGCTTTGTTTGTTTCAAC 59.755 43.478 0.00 0.00 0.00 3.18
3269 4408 5.839606 ACTAGTTAGGACACTGAAGAGGTTT 59.160 40.000 0.00 0.00 0.00 3.27
3404 4543 0.600255 ACAGAGCGAAAACAGACGGG 60.600 55.000 0.00 0.00 0.00 5.28
3430 4569 7.095899 GCAGCAGAACAGAAAGGAAATTAAAAG 60.096 37.037 0.00 0.00 0.00 2.27
3432 4571 6.040842 AGCAGCAGAACAGAAAGGAAATTAAA 59.959 34.615 0.00 0.00 0.00 1.52
3438 4577 2.158769 TCAGCAGCAGAACAGAAAGGAA 60.159 45.455 0.00 0.00 0.00 3.36
3439 4581 1.417517 TCAGCAGCAGAACAGAAAGGA 59.582 47.619 0.00 0.00 0.00 3.36
3440 4582 1.888215 TCAGCAGCAGAACAGAAAGG 58.112 50.000 0.00 0.00 0.00 3.11
3464 4606 3.742327 CGCAAGAGGACCATACACATCAT 60.742 47.826 0.00 0.00 43.02 2.45
3471 4613 2.414161 GCAAAACGCAAGAGGACCATAC 60.414 50.000 0.00 0.00 41.79 2.39
3472 4614 1.810151 GCAAAACGCAAGAGGACCATA 59.190 47.619 0.00 0.00 41.79 2.74
3515 4659 9.461312 TGTCTAATAACAATACTGCTTTCCATT 57.539 29.630 0.00 0.00 0.00 3.16
3535 4679 6.145534 CGTTTTGAAGCATACAGACTGTCTAA 59.854 38.462 12.39 2.19 0.00 2.10
3708 4860 9.916397 AGCTAAAAGTTCGAATCGTAATTATTG 57.084 29.630 0.00 0.00 0.00 1.90
3744 4897 4.088648 CGTGACAAATGATTTACGCTTCC 58.911 43.478 0.00 0.00 0.00 3.46
3789 4942 5.670485 CAAGGGTGCAACTACATACAGATA 58.330 41.667 0.00 0.00 36.74 1.98
3832 4985 8.792633 TGATGGGAGTACAAAGTAAAAATCTTG 58.207 33.333 0.00 0.00 0.00 3.02
3860 5013 7.741554 ATGGGTTTATGGCCTTGTATAAAAA 57.258 32.000 3.32 0.00 32.39 1.94
3863 5016 9.523168 GTAATATGGGTTTATGGCCTTGTATAA 57.477 33.333 3.32 0.00 0.00 0.98
3864 5017 8.670490 TGTAATATGGGTTTATGGCCTTGTATA 58.330 33.333 3.32 0.00 0.00 1.47
3865 5018 7.531317 TGTAATATGGGTTTATGGCCTTGTAT 58.469 34.615 3.32 0.00 0.00 2.29
3866 5019 6.912426 TGTAATATGGGTTTATGGCCTTGTA 58.088 36.000 3.32 0.00 0.00 2.41
3867 5020 5.772004 TGTAATATGGGTTTATGGCCTTGT 58.228 37.500 3.32 0.00 0.00 3.16
3868 5021 5.243730 CCTGTAATATGGGTTTATGGCCTTG 59.756 44.000 3.32 0.00 0.00 3.61
3869 5022 5.103258 ACCTGTAATATGGGTTTATGGCCTT 60.103 40.000 3.32 0.00 0.00 4.35
3870 5023 4.418863 ACCTGTAATATGGGTTTATGGCCT 59.581 41.667 3.32 0.00 0.00 5.19
3871 5024 4.736473 ACCTGTAATATGGGTTTATGGCC 58.264 43.478 0.00 0.00 0.00 5.36
3872 5025 7.172342 TGATACCTGTAATATGGGTTTATGGC 58.828 38.462 0.00 0.00 34.86 4.40
3873 5026 9.581289 TTTGATACCTGTAATATGGGTTTATGG 57.419 33.333 0.00 0.00 34.86 2.74
3877 5030 9.847224 CTACTTTGATACCTGTAATATGGGTTT 57.153 33.333 0.00 0.00 34.86 3.27
3878 5031 9.220906 TCTACTTTGATACCTGTAATATGGGTT 57.779 33.333 0.00 0.00 34.86 4.11
3879 5032 8.792830 TCTACTTTGATACCTGTAATATGGGT 57.207 34.615 0.00 0.00 37.16 4.51
3888 5041 9.686683 AGCATTAATTTCTACTTTGATACCTGT 57.313 29.630 0.00 0.00 0.00 4.00
3916 5069 9.359653 AGATTATCTTGCAATATTGGCTTAAGT 57.640 29.630 17.02 4.84 0.00 2.24
3920 5073 9.538508 GAAAAGATTATCTTGCAATATTGGCTT 57.461 29.630 17.02 0.35 36.71 4.35
3921 5074 8.921205 AGAAAAGATTATCTTGCAATATTGGCT 58.079 29.630 17.02 0.00 36.71 4.75
3922 5075 9.189723 GAGAAAAGATTATCTTGCAATATTGGC 57.810 33.333 17.02 9.73 36.71 4.52
3923 5076 9.688592 GGAGAAAAGATTATCTTGCAATATTGG 57.311 33.333 17.02 0.94 36.71 3.16
3926 5079 8.997323 CGAGGAGAAAAGATTATCTTGCAATAT 58.003 33.333 8.34 0.05 36.71 1.28
3927 5080 7.041780 GCGAGGAGAAAAGATTATCTTGCAATA 60.042 37.037 8.34 0.00 36.71 1.90
3928 5081 6.238593 GCGAGGAGAAAAGATTATCTTGCAAT 60.239 38.462 8.34 0.00 36.71 3.56
3929 5082 5.065218 GCGAGGAGAAAAGATTATCTTGCAA 59.935 40.000 8.34 0.00 36.71 4.08
3930 5083 4.572389 GCGAGGAGAAAAGATTATCTTGCA 59.428 41.667 8.34 0.00 36.71 4.08
3931 5084 4.813697 AGCGAGGAGAAAAGATTATCTTGC 59.186 41.667 8.34 5.06 36.71 4.01
3932 5085 6.536582 TCAAGCGAGGAGAAAAGATTATCTTG 59.463 38.462 8.34 0.00 36.71 3.02
3933 5086 6.536941 GTCAAGCGAGGAGAAAAGATTATCTT 59.463 38.462 0.99 0.99 38.59 2.40
3934 5087 6.045955 GTCAAGCGAGGAGAAAAGATTATCT 58.954 40.000 0.00 0.00 0.00 1.98
3935 5088 5.051374 CGTCAAGCGAGGAGAAAAGATTATC 60.051 44.000 0.00 0.00 44.77 1.75
3936 5089 4.806247 CGTCAAGCGAGGAGAAAAGATTAT 59.194 41.667 0.00 0.00 44.77 1.28
3937 5090 4.174009 CGTCAAGCGAGGAGAAAAGATTA 58.826 43.478 0.00 0.00 44.77 1.75
3938 5091 2.996621 CGTCAAGCGAGGAGAAAAGATT 59.003 45.455 0.00 0.00 44.77 2.40
3939 5092 2.028930 ACGTCAAGCGAGGAGAAAAGAT 60.029 45.455 0.00 0.00 44.77 2.40
3940 5093 1.340248 ACGTCAAGCGAGGAGAAAAGA 59.660 47.619 0.00 0.00 44.77 2.52
3941 5094 1.457303 CACGTCAAGCGAGGAGAAAAG 59.543 52.381 0.00 0.00 44.77 2.27
3942 5095 1.202486 ACACGTCAAGCGAGGAGAAAA 60.202 47.619 0.00 0.00 44.77 2.29
3943 5096 0.387929 ACACGTCAAGCGAGGAGAAA 59.612 50.000 0.00 0.00 44.77 2.52
3944 5097 0.387929 AACACGTCAAGCGAGGAGAA 59.612 50.000 0.00 0.00 44.77 2.87
3945 5098 1.241165 TAACACGTCAAGCGAGGAGA 58.759 50.000 0.00 0.00 44.77 3.71
3946 5099 2.060326 TTAACACGTCAAGCGAGGAG 57.940 50.000 0.00 0.00 44.77 3.69
3947 5100 2.736144 ATTAACACGTCAAGCGAGGA 57.264 45.000 0.00 0.00 44.77 3.71
3948 5101 4.914312 TTAATTAACACGTCAAGCGAGG 57.086 40.909 0.00 0.00 44.77 4.63
3949 5102 6.795114 ACAAATTAATTAACACGTCAAGCGAG 59.205 34.615 0.01 0.00 44.77 5.03
3950 5103 6.660722 ACAAATTAATTAACACGTCAAGCGA 58.339 32.000 0.01 0.00 44.77 4.93
3966 5119 9.737427 TGCGTTGAAGAGAAAAATACAAATTAA 57.263 25.926 0.00 0.00 0.00 1.40
3967 5120 9.176181 GTGCGTTGAAGAGAAAAATACAAATTA 57.824 29.630 0.00 0.00 0.00 1.40
3968 5121 7.704472 TGTGCGTTGAAGAGAAAAATACAAATT 59.296 29.630 0.00 0.00 0.00 1.82
3969 5122 7.199766 TGTGCGTTGAAGAGAAAAATACAAAT 58.800 30.769 0.00 0.00 0.00 2.32
3970 5123 6.556212 TGTGCGTTGAAGAGAAAAATACAAA 58.444 32.000 0.00 0.00 0.00 2.83
3971 5124 6.125327 TGTGCGTTGAAGAGAAAAATACAA 57.875 33.333 0.00 0.00 0.00 2.41
3972 5125 5.295787 ACTGTGCGTTGAAGAGAAAAATACA 59.704 36.000 0.00 0.00 0.00 2.29
3973 5126 5.748592 ACTGTGCGTTGAAGAGAAAAATAC 58.251 37.500 0.00 0.00 0.00 1.89
3974 5127 7.439955 TCTTACTGTGCGTTGAAGAGAAAAATA 59.560 33.333 0.00 0.00 0.00 1.40
3975 5128 4.900635 ACTGTGCGTTGAAGAGAAAAAT 57.099 36.364 0.00 0.00 0.00 1.82
3976 5129 5.583061 TCTTACTGTGCGTTGAAGAGAAAAA 59.417 36.000 0.00 0.00 0.00 1.94
3977 5130 5.006358 GTCTTACTGTGCGTTGAAGAGAAAA 59.994 40.000 0.00 0.00 0.00 2.29
3978 5131 4.506654 GTCTTACTGTGCGTTGAAGAGAAA 59.493 41.667 0.00 0.00 0.00 2.52
3979 5132 4.049186 GTCTTACTGTGCGTTGAAGAGAA 58.951 43.478 0.00 0.00 0.00 2.87
3980 5133 3.067601 TGTCTTACTGTGCGTTGAAGAGA 59.932 43.478 0.00 0.00 0.00 3.10
3981 5134 3.381045 TGTCTTACTGTGCGTTGAAGAG 58.619 45.455 0.00 0.00 0.00 2.85
3982 5135 3.446310 TGTCTTACTGTGCGTTGAAGA 57.554 42.857 0.00 0.00 0.00 2.87
3983 5136 4.377431 GGATTGTCTTACTGTGCGTTGAAG 60.377 45.833 0.00 0.00 0.00 3.02
3984 5137 3.496884 GGATTGTCTTACTGTGCGTTGAA 59.503 43.478 0.00 0.00 0.00 2.69
3985 5138 3.064207 GGATTGTCTTACTGTGCGTTGA 58.936 45.455 0.00 0.00 0.00 3.18
3986 5139 3.067106 AGGATTGTCTTACTGTGCGTTG 58.933 45.455 0.00 0.00 0.00 4.10
3987 5140 3.006967 AGAGGATTGTCTTACTGTGCGTT 59.993 43.478 0.00 0.00 0.00 4.84
3988 5141 2.563179 AGAGGATTGTCTTACTGTGCGT 59.437 45.455 0.00 0.00 0.00 5.24
3989 5142 3.182967 GAGAGGATTGTCTTACTGTGCG 58.817 50.000 0.00 0.00 0.00 5.34
3990 5143 3.929610 GTGAGAGGATTGTCTTACTGTGC 59.070 47.826 0.00 0.00 31.83 4.57
3991 5144 5.398603 AGTGAGAGGATTGTCTTACTGTG 57.601 43.478 0.00 0.00 40.79 3.66
3992 5145 4.464597 GGAGTGAGAGGATTGTCTTACTGT 59.535 45.833 3.29 0.00 41.99 3.55
3993 5146 4.709397 AGGAGTGAGAGGATTGTCTTACTG 59.291 45.833 3.29 0.00 41.99 2.74
3994 5147 4.941713 AGGAGTGAGAGGATTGTCTTACT 58.058 43.478 0.00 0.00 43.97 2.24
3995 5148 5.046950 ACAAGGAGTGAGAGGATTGTCTTAC 60.047 44.000 0.00 0.00 34.12 2.34
3996 5149 5.087323 ACAAGGAGTGAGAGGATTGTCTTA 58.913 41.667 0.00 0.00 0.00 2.10
3997 5150 3.906846 ACAAGGAGTGAGAGGATTGTCTT 59.093 43.478 0.00 0.00 0.00 3.01
3998 5151 3.515562 ACAAGGAGTGAGAGGATTGTCT 58.484 45.455 0.00 0.00 0.00 3.41
3999 5152 3.971245 ACAAGGAGTGAGAGGATTGTC 57.029 47.619 0.00 0.00 0.00 3.18
4000 5153 3.244700 CCAACAAGGAGTGAGAGGATTGT 60.245 47.826 0.00 0.00 41.22 2.71
4001 5154 3.244700 ACCAACAAGGAGTGAGAGGATTG 60.245 47.826 0.00 0.00 41.22 2.67
4002 5155 2.982488 ACCAACAAGGAGTGAGAGGATT 59.018 45.455 0.00 0.00 41.22 3.01
4003 5156 2.625639 ACCAACAAGGAGTGAGAGGAT 58.374 47.619 0.00 0.00 41.22 3.24
4004 5157 2.103153 ACCAACAAGGAGTGAGAGGA 57.897 50.000 0.00 0.00 41.22 3.71
4005 5158 2.104792 TCAACCAACAAGGAGTGAGAGG 59.895 50.000 0.00 0.00 41.22 3.69
4006 5159 3.475566 TCAACCAACAAGGAGTGAGAG 57.524 47.619 0.00 0.00 41.22 3.20
4007 5160 4.437682 AATCAACCAACAAGGAGTGAGA 57.562 40.909 0.00 0.00 41.22 3.27
4008 5161 6.824305 ATTAATCAACCAACAAGGAGTGAG 57.176 37.500 0.00 0.00 41.22 3.51
4009 5162 7.339212 CCATATTAATCAACCAACAAGGAGTGA 59.661 37.037 0.00 0.00 41.22 3.41
4010 5163 7.483307 CCATATTAATCAACCAACAAGGAGTG 58.517 38.462 0.00 0.00 41.22 3.51
4011 5164 6.096846 GCCATATTAATCAACCAACAAGGAGT 59.903 38.462 0.00 0.00 41.22 3.85
4012 5165 6.507023 GCCATATTAATCAACCAACAAGGAG 58.493 40.000 0.00 0.00 41.22 3.69
4013 5166 5.067153 CGCCATATTAATCAACCAACAAGGA 59.933 40.000 0.00 0.00 41.22 3.36
4014 5167 5.280945 CGCCATATTAATCAACCAACAAGG 58.719 41.667 0.00 0.00 45.67 3.61
4015 5168 4.739716 GCGCCATATTAATCAACCAACAAG 59.260 41.667 0.00 0.00 0.00 3.16
4016 5169 4.158579 TGCGCCATATTAATCAACCAACAA 59.841 37.500 4.18 0.00 0.00 2.83
4017 5170 3.696548 TGCGCCATATTAATCAACCAACA 59.303 39.130 4.18 0.00 0.00 3.33
4018 5171 4.300189 TGCGCCATATTAATCAACCAAC 57.700 40.909 4.18 0.00 0.00 3.77
4019 5172 4.795635 GCATGCGCCATATTAATCAACCAA 60.796 41.667 4.18 0.00 0.00 3.67
4020 5173 3.305267 GCATGCGCCATATTAATCAACCA 60.305 43.478 4.18 0.00 0.00 3.67
4021 5174 3.244976 GCATGCGCCATATTAATCAACC 58.755 45.455 4.18 0.00 0.00 3.77
4022 5175 3.899734 TGCATGCGCCATATTAATCAAC 58.100 40.909 14.09 0.00 37.32 3.18
4023 5176 4.581077 TTGCATGCGCCATATTAATCAA 57.419 36.364 14.09 0.00 37.32 2.57
4024 5177 4.202090 TGTTTGCATGCGCCATATTAATCA 60.202 37.500 14.09 1.77 37.32 2.57
4025 5178 4.297510 TGTTTGCATGCGCCATATTAATC 58.702 39.130 14.09 0.00 37.32 1.75
4026 5179 4.319139 TGTTTGCATGCGCCATATTAAT 57.681 36.364 14.09 0.00 37.32 1.40
4027 5180 3.790152 TGTTTGCATGCGCCATATTAA 57.210 38.095 14.09 0.00 37.32 1.40
4028 5181 3.790152 TTGTTTGCATGCGCCATATTA 57.210 38.095 14.09 0.00 37.32 0.98
4029 5182 2.669300 TTGTTTGCATGCGCCATATT 57.331 40.000 14.09 0.00 37.32 1.28
4030 5183 2.270047 GTTTGTTTGCATGCGCCATAT 58.730 42.857 14.09 0.00 37.32 1.78
4031 5184 1.671261 GGTTTGTTTGCATGCGCCATA 60.671 47.619 14.09 1.83 37.32 2.74
4032 5185 0.950071 GGTTTGTTTGCATGCGCCAT 60.950 50.000 14.09 0.00 37.32 4.40
4033 5186 1.593750 GGTTTGTTTGCATGCGCCA 60.594 52.632 14.09 6.43 37.32 5.69
4034 5187 0.879839 AAGGTTTGTTTGCATGCGCC 60.880 50.000 14.09 3.57 37.32 6.53
4035 5188 0.508213 GAAGGTTTGTTTGCATGCGC 59.492 50.000 14.09 0.00 39.24 6.09
4036 5189 2.053627 GAGAAGGTTTGTTTGCATGCG 58.946 47.619 14.09 0.00 0.00 4.73
4037 5190 2.796593 GTGAGAAGGTTTGTTTGCATGC 59.203 45.455 11.82 11.82 0.00 4.06
4038 5191 3.798337 GTGTGAGAAGGTTTGTTTGCATG 59.202 43.478 0.00 0.00 0.00 4.06
4039 5192 3.181476 GGTGTGAGAAGGTTTGTTTGCAT 60.181 43.478 0.00 0.00 0.00 3.96
4040 5193 2.165437 GGTGTGAGAAGGTTTGTTTGCA 59.835 45.455 0.00 0.00 0.00 4.08
4041 5194 2.481276 GGGTGTGAGAAGGTTTGTTTGC 60.481 50.000 0.00 0.00 0.00 3.68
4042 5195 2.223479 CGGGTGTGAGAAGGTTTGTTTG 60.223 50.000 0.00 0.00 0.00 2.93
4043 5196 2.021457 CGGGTGTGAGAAGGTTTGTTT 58.979 47.619 0.00 0.00 0.00 2.83
4044 5197 1.675552 CGGGTGTGAGAAGGTTTGTT 58.324 50.000 0.00 0.00 0.00 2.83
4045 5198 0.818040 GCGGGTGTGAGAAGGTTTGT 60.818 55.000 0.00 0.00 0.00 2.83
4046 5199 0.817634 TGCGGGTGTGAGAAGGTTTG 60.818 55.000 0.00 0.00 0.00 2.93
4047 5200 0.110486 ATGCGGGTGTGAGAAGGTTT 59.890 50.000 0.00 0.00 0.00 3.27
4048 5201 0.606401 CATGCGGGTGTGAGAAGGTT 60.606 55.000 0.00 0.00 0.00 3.50
4049 5202 1.003355 CATGCGGGTGTGAGAAGGT 60.003 57.895 0.00 0.00 0.00 3.50
4050 5203 2.401766 GCATGCGGGTGTGAGAAGG 61.402 63.158 0.00 0.00 0.00 3.46
4051 5204 1.028330 ATGCATGCGGGTGTGAGAAG 61.028 55.000 14.09 0.00 0.00 2.85
4052 5205 1.002257 ATGCATGCGGGTGTGAGAA 60.002 52.632 14.09 0.00 0.00 2.87
4053 5206 1.746239 CATGCATGCGGGTGTGAGA 60.746 57.895 14.93 0.00 0.00 3.27
4054 5207 0.744057 TACATGCATGCGGGTGTGAG 60.744 55.000 26.53 0.00 0.00 3.51
4055 5208 0.322008 TTACATGCATGCGGGTGTGA 60.322 50.000 26.53 17.62 0.00 3.58
4056 5209 0.099259 CTTACATGCATGCGGGTGTG 59.901 55.000 26.53 15.65 0.00 3.82
4057 5210 1.031571 CCTTACATGCATGCGGGTGT 61.032 55.000 26.53 21.57 0.00 4.16
4058 5211 1.727511 CCCTTACATGCATGCGGGTG 61.728 60.000 28.36 17.14 31.96 4.61
4059 5212 1.453745 CCCTTACATGCATGCGGGT 60.454 57.895 28.36 15.67 31.96 5.28
4060 5213 2.195567 CCCCTTACATGCATGCGGG 61.196 63.158 29.16 29.16 34.63 6.13
4061 5214 2.848858 GCCCCTTACATGCATGCGG 61.849 63.158 26.53 21.81 0.00 5.69
4062 5215 1.457823 ATGCCCCTTACATGCATGCG 61.458 55.000 26.53 14.49 43.66 4.73
4063 5216 0.754472 AATGCCCCTTACATGCATGC 59.246 50.000 26.53 11.82 44.49 4.06
4064 5217 4.039488 ACATTAATGCCCCTTACATGCATG 59.961 41.667 25.09 25.09 44.49 4.06
4066 5219 3.636300 GACATTAATGCCCCTTACATGCA 59.364 43.478 15.48 0.00 39.68 3.96
4067 5220 3.005791 GGACATTAATGCCCCTTACATGC 59.994 47.826 15.48 0.00 0.00 4.06
4068 5221 4.473444 AGGACATTAATGCCCCTTACATG 58.527 43.478 16.39 0.00 32.45 3.21
4069 5222 4.729868 GAGGACATTAATGCCCCTTACAT 58.270 43.478 23.15 4.92 35.27 2.29
4070 5223 3.433031 CGAGGACATTAATGCCCCTTACA 60.433 47.826 23.15 0.00 35.27 2.41
4071 5224 3.139077 CGAGGACATTAATGCCCCTTAC 58.861 50.000 23.15 14.45 35.27 2.34
4072 5225 2.105821 CCGAGGACATTAATGCCCCTTA 59.894 50.000 23.15 0.00 35.27 2.69
4073 5226 1.133792 CCGAGGACATTAATGCCCCTT 60.134 52.381 23.15 6.81 35.27 3.95
4074 5227 0.474184 CCGAGGACATTAATGCCCCT 59.526 55.000 22.73 22.73 37.02 4.79
4075 5228 0.182775 ACCGAGGACATTAATGCCCC 59.817 55.000 16.39 16.10 29.57 5.80
4076 5229 1.676006 CAACCGAGGACATTAATGCCC 59.324 52.381 15.48 14.01 0.00 5.36
4077 5230 2.365582 ACAACCGAGGACATTAATGCC 58.634 47.619 15.48 16.14 0.00 4.40
4078 5231 4.634443 ACTAACAACCGAGGACATTAATGC 59.366 41.667 15.48 8.16 0.00 3.56
4079 5232 7.709182 TGATACTAACAACCGAGGACATTAATG 59.291 37.037 14.01 14.01 0.00 1.90
4080 5233 7.788026 TGATACTAACAACCGAGGACATTAAT 58.212 34.615 0.00 0.00 0.00 1.40
4081 5234 7.123098 TCTGATACTAACAACCGAGGACATTAA 59.877 37.037 0.00 0.00 0.00 1.40
4082 5235 6.604396 TCTGATACTAACAACCGAGGACATTA 59.396 38.462 0.00 0.00 0.00 1.90
4083 5236 5.421056 TCTGATACTAACAACCGAGGACATT 59.579 40.000 0.00 0.00 0.00 2.71
4084 5237 4.954202 TCTGATACTAACAACCGAGGACAT 59.046 41.667 0.00 0.00 0.00 3.06
4085 5238 4.157289 GTCTGATACTAACAACCGAGGACA 59.843 45.833 0.00 0.00 0.00 4.02
4086 5239 4.157289 TGTCTGATACTAACAACCGAGGAC 59.843 45.833 0.00 0.00 0.00 3.85
4087 5240 4.338012 TGTCTGATACTAACAACCGAGGA 58.662 43.478 0.00 0.00 0.00 3.71
4088 5241 4.713824 TGTCTGATACTAACAACCGAGG 57.286 45.455 0.00 0.00 0.00 4.63
4089 5242 6.157211 AGTTTGTCTGATACTAACAACCGAG 58.843 40.000 5.52 0.00 43.60 4.63
4090 5243 6.092955 AGTTTGTCTGATACTAACAACCGA 57.907 37.500 5.52 0.00 43.60 4.69
4091 5244 6.780706 AAGTTTGTCTGATACTAACAACCG 57.219 37.500 5.52 0.00 43.60 4.44
4104 5257 9.329913 CGAGGTAAAATTGATAAAGTTTGTCTG 57.670 33.333 12.82 0.00 0.00 3.51
4105 5258 9.280174 TCGAGGTAAAATTGATAAAGTTTGTCT 57.720 29.630 12.82 0.00 0.00 3.41
4116 5269 9.396022 ACTAACATCAATCGAGGTAAAATTGAT 57.604 29.630 3.00 3.00 46.06 2.57
4117 5270 8.664798 CACTAACATCAATCGAGGTAAAATTGA 58.335 33.333 0.00 0.00 41.99 2.57
4118 5271 7.910162 CCACTAACATCAATCGAGGTAAAATTG 59.090 37.037 0.00 0.00 34.40 2.32
4119 5272 7.415206 GCCACTAACATCAATCGAGGTAAAATT 60.415 37.037 0.00 0.00 34.40 1.82
4120 5273 6.038271 GCCACTAACATCAATCGAGGTAAAAT 59.962 38.462 0.00 0.00 34.40 1.82
4121 5274 5.353123 GCCACTAACATCAATCGAGGTAAAA 59.647 40.000 0.00 0.00 34.40 1.52
4122 5275 4.873827 GCCACTAACATCAATCGAGGTAAA 59.126 41.667 0.00 0.00 34.40 2.01
4123 5276 4.439057 GCCACTAACATCAATCGAGGTAA 58.561 43.478 0.00 0.00 34.40 2.85
4124 5277 3.181469 GGCCACTAACATCAATCGAGGTA 60.181 47.826 0.00 0.00 34.40 3.08
4125 5278 2.420129 GGCCACTAACATCAATCGAGGT 60.420 50.000 0.00 0.00 37.90 3.85
4126 5279 2.158900 AGGCCACTAACATCAATCGAGG 60.159 50.000 5.01 0.00 0.00 4.63
4127 5280 3.185246 AGGCCACTAACATCAATCGAG 57.815 47.619 5.01 0.00 0.00 4.04
4128 5281 3.270027 CAAGGCCACTAACATCAATCGA 58.730 45.455 5.01 0.00 0.00 3.59
4129 5282 3.009723 ACAAGGCCACTAACATCAATCG 58.990 45.455 5.01 0.00 0.00 3.34
4130 5283 6.073003 GCTATACAAGGCCACTAACATCAATC 60.073 42.308 5.01 0.00 0.00 2.67
4131 5284 5.765182 GCTATACAAGGCCACTAACATCAAT 59.235 40.000 5.01 0.00 0.00 2.57
4132 5285 5.104527 AGCTATACAAGGCCACTAACATCAA 60.105 40.000 5.01 0.00 0.00 2.57
4133 5286 4.408921 AGCTATACAAGGCCACTAACATCA 59.591 41.667 5.01 0.00 0.00 3.07
4134 5287 4.752101 CAGCTATACAAGGCCACTAACATC 59.248 45.833 5.01 0.00 0.00 3.06
4135 5288 4.164221 ACAGCTATACAAGGCCACTAACAT 59.836 41.667 5.01 0.00 0.00 2.71
4136 5289 3.517901 ACAGCTATACAAGGCCACTAACA 59.482 43.478 5.01 0.00 0.00 2.41
4137 5290 4.138487 ACAGCTATACAAGGCCACTAAC 57.862 45.455 5.01 0.00 0.00 2.34
4138 5291 5.424252 AGTTACAGCTATACAAGGCCACTAA 59.576 40.000 5.01 0.00 0.00 2.24
4139 5292 4.960469 AGTTACAGCTATACAAGGCCACTA 59.040 41.667 5.01 0.00 0.00 2.74
4140 5293 3.775316 AGTTACAGCTATACAAGGCCACT 59.225 43.478 5.01 0.00 0.00 4.00
4141 5294 4.138487 AGTTACAGCTATACAAGGCCAC 57.862 45.455 5.01 0.00 0.00 5.01
4142 5295 4.837093 AAGTTACAGCTATACAAGGCCA 57.163 40.909 5.01 0.00 0.00 5.36
4143 5296 9.503399 AATTATAAGTTACAGCTATACAAGGCC 57.497 33.333 0.00 0.00 0.00 5.19
4153 5306 9.477484 CCACTATCGAAATTATAAGTTACAGCT 57.523 33.333 0.00 0.00 0.00 4.24
4154 5307 8.221766 GCCACTATCGAAATTATAAGTTACAGC 58.778 37.037 0.00 0.00 0.00 4.40
4155 5308 8.709646 GGCCACTATCGAAATTATAAGTTACAG 58.290 37.037 0.00 0.00 0.00 2.74
4156 5309 8.426489 AGGCCACTATCGAAATTATAAGTTACA 58.574 33.333 5.01 0.00 0.00 2.41
4157 5310 8.828688 AGGCCACTATCGAAATTATAAGTTAC 57.171 34.615 5.01 0.00 0.00 2.50
4158 5311 7.811236 CGAGGCCACTATCGAAATTATAAGTTA 59.189 37.037 5.01 0.00 41.40 2.24
4159 5312 6.645415 CGAGGCCACTATCGAAATTATAAGTT 59.355 38.462 5.01 0.00 41.40 2.66
4160 5313 6.157211 CGAGGCCACTATCGAAATTATAAGT 58.843 40.000 5.01 0.00 41.40 2.24
4161 5314 5.062308 GCGAGGCCACTATCGAAATTATAAG 59.938 44.000 15.64 0.00 41.40 1.73
4162 5315 4.927425 GCGAGGCCACTATCGAAATTATAA 59.073 41.667 15.64 0.00 41.40 0.98
4163 5316 4.021807 TGCGAGGCCACTATCGAAATTATA 60.022 41.667 15.64 0.00 41.40 0.98
4164 5317 3.244078 TGCGAGGCCACTATCGAAATTAT 60.244 43.478 15.64 0.00 41.40 1.28
4165 5318 2.101750 TGCGAGGCCACTATCGAAATTA 59.898 45.455 15.64 0.00 41.40 1.40
4166 5319 1.134521 TGCGAGGCCACTATCGAAATT 60.135 47.619 15.64 0.00 41.40 1.82
4167 5320 0.464036 TGCGAGGCCACTATCGAAAT 59.536 50.000 15.64 0.00 41.40 2.17
4168 5321 0.464036 ATGCGAGGCCACTATCGAAA 59.536 50.000 15.64 3.71 41.40 3.46
4169 5322 1.324383 TATGCGAGGCCACTATCGAA 58.676 50.000 15.64 5.76 41.40 3.71
4170 5323 1.324383 TTATGCGAGGCCACTATCGA 58.676 50.000 15.64 2.19 41.40 3.59
4171 5324 2.148916 TTTATGCGAGGCCACTATCG 57.851 50.000 5.01 6.64 41.79 2.92
4189 5342 7.134842 ACAATTGATATCCTCCCTCCATTTTT 58.865 34.615 13.59 0.00 0.00 1.94
4190 5343 6.686544 ACAATTGATATCCTCCCTCCATTTT 58.313 36.000 13.59 0.00 0.00 1.82
4191 5344 6.285329 ACAATTGATATCCTCCCTCCATTT 57.715 37.500 13.59 0.00 0.00 2.32
4192 5345 5.513788 CGACAATTGATATCCTCCCTCCATT 60.514 44.000 13.59 0.00 0.00 3.16
4193 5346 4.019860 CGACAATTGATATCCTCCCTCCAT 60.020 45.833 13.59 0.00 0.00 3.41
4194 5347 3.324846 CGACAATTGATATCCTCCCTCCA 59.675 47.826 13.59 0.00 0.00 3.86
4195 5348 3.325135 ACGACAATTGATATCCTCCCTCC 59.675 47.826 13.59 0.00 0.00 4.30
4196 5349 4.039245 TCACGACAATTGATATCCTCCCTC 59.961 45.833 13.59 0.00 0.00 4.30
4197 5350 3.967326 TCACGACAATTGATATCCTCCCT 59.033 43.478 13.59 0.00 0.00 4.20
4198 5351 4.039245 TCTCACGACAATTGATATCCTCCC 59.961 45.833 13.59 0.00 0.00 4.30
4199 5352 5.201713 TCTCACGACAATTGATATCCTCC 57.798 43.478 13.59 0.00 0.00 4.30
4200 5353 6.450545 TCATCTCACGACAATTGATATCCTC 58.549 40.000 13.59 0.00 0.00 3.71
4201 5354 6.410942 TCATCTCACGACAATTGATATCCT 57.589 37.500 13.59 0.00 0.00 3.24
4202 5355 7.348201 GTTTCATCTCACGACAATTGATATCC 58.652 38.462 13.59 0.00 0.00 2.59
4203 5356 7.059817 CGTTTCATCTCACGACAATTGATATC 58.940 38.462 13.59 0.00 38.76 1.63
4204 5357 6.535150 ACGTTTCATCTCACGACAATTGATAT 59.465 34.615 13.59 0.00 39.76 1.63
4210 5363 3.121279 CGAACGTTTCATCTCACGACAAT 59.879 43.478 0.46 0.00 39.76 2.71
4217 5370 1.336877 CTCGCGAACGTTTCATCTCA 58.663 50.000 11.33 0.00 41.18 3.27
4220 5373 1.621107 TACCTCGCGAACGTTTCATC 58.379 50.000 11.33 0.00 41.18 2.92
4246 5399 1.733360 GGCATGTTCCGCGTAAAACTA 59.267 47.619 4.92 0.00 0.00 2.24
4248 5401 0.519961 AGGCATGTTCCGCGTAAAAC 59.480 50.000 4.92 7.33 0.00 2.43
4264 5417 0.601311 GGGCGATGATGTGTAGAGGC 60.601 60.000 0.00 0.00 0.00 4.70
4265 5418 0.752658 TGGGCGATGATGTGTAGAGG 59.247 55.000 0.00 0.00 0.00 3.69
4307 5509 4.040755 AGGAGTAGGCATCCTAACAATGT 58.959 43.478 4.32 0.00 45.58 2.71
4309 5511 4.103311 GGAAGGAGTAGGCATCCTAACAAT 59.897 45.833 6.39 0.00 46.75 2.71
4311 5513 3.039011 GGAAGGAGTAGGCATCCTAACA 58.961 50.000 6.39 0.00 46.75 2.41
4312 5514 2.036089 CGGAAGGAGTAGGCATCCTAAC 59.964 54.545 6.39 4.80 46.75 2.34
4313 5515 2.317040 CGGAAGGAGTAGGCATCCTAA 58.683 52.381 6.39 0.00 46.75 2.69
4314 5516 1.217183 ACGGAAGGAGTAGGCATCCTA 59.783 52.381 6.39 0.00 46.75 2.94
4316 5518 0.831307 AACGGAAGGAGTAGGCATCC 59.169 55.000 0.00 0.00 37.07 3.51
4317 5519 1.207329 ACAACGGAAGGAGTAGGCATC 59.793 52.381 0.00 0.00 0.00 3.91
4318 5520 1.276622 ACAACGGAAGGAGTAGGCAT 58.723 50.000 0.00 0.00 0.00 4.40
4319 5521 1.053424 AACAACGGAAGGAGTAGGCA 58.947 50.000 0.00 0.00 0.00 4.75
4320 5522 1.001633 TCAACAACGGAAGGAGTAGGC 59.998 52.381 0.00 0.00 0.00 3.93
4321 5523 2.299297 AGTCAACAACGGAAGGAGTAGG 59.701 50.000 0.00 0.00 0.00 3.18
4322 5524 3.256136 AGAGTCAACAACGGAAGGAGTAG 59.744 47.826 0.00 0.00 0.00 2.57
4323 5525 3.228453 AGAGTCAACAACGGAAGGAGTA 58.772 45.455 0.00 0.00 0.00 2.59
4324 5526 2.040178 AGAGTCAACAACGGAAGGAGT 58.960 47.619 0.00 0.00 0.00 3.85
4325 5527 2.821991 AGAGTCAACAACGGAAGGAG 57.178 50.000 0.00 0.00 0.00 3.69
4326 5528 2.698797 AGAAGAGTCAACAACGGAAGGA 59.301 45.455 0.00 0.00 0.00 3.36
4327 5529 3.060602 GAGAAGAGTCAACAACGGAAGG 58.939 50.000 0.00 0.00 0.00 3.46
4328 5530 3.983741 AGAGAAGAGTCAACAACGGAAG 58.016 45.455 0.00 0.00 0.00 3.46
4329 5531 4.119862 CAAGAGAAGAGTCAACAACGGAA 58.880 43.478 0.00 0.00 0.00 4.30
4330 5532 3.132289 ACAAGAGAAGAGTCAACAACGGA 59.868 43.478 0.00 0.00 0.00 4.69
4331 5533 3.458189 ACAAGAGAAGAGTCAACAACGG 58.542 45.455 0.00 0.00 0.00 4.44
4332 5534 6.583912 TTAACAAGAGAAGAGTCAACAACG 57.416 37.500 0.00 0.00 0.00 4.10
4347 5549 8.307483 CAGTCTCTGAACCTCTTATTAACAAGA 58.693 37.037 0.00 0.00 32.44 3.02
4348 5550 8.307483 TCAGTCTCTGAACCTCTTATTAACAAG 58.693 37.037 0.00 0.00 37.57 3.16
4349 5551 8.190326 TCAGTCTCTGAACCTCTTATTAACAA 57.810 34.615 0.00 0.00 37.57 2.83
4350 5552 7.776618 TCAGTCTCTGAACCTCTTATTAACA 57.223 36.000 0.00 0.00 37.57 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.