Multiple sequence alignment - TraesCS2D01G207200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G207200 chr2D 100.000 3005 0 0 1 3005 160612354 160615358 0.000000e+00 5550
1 TraesCS2D01G207200 chr2B 93.809 2019 60 30 391 2372 217432801 217434791 0.000000e+00 2976
2 TraesCS2D01G207200 chr2B 93.709 302 16 3 1 301 217418798 217419097 1.640000e-122 449
3 TraesCS2D01G207200 chr2B 90.333 300 18 3 2469 2762 217434909 217435203 1.690000e-102 383
4 TraesCS2D01G207200 chr2A 92.760 2058 64 33 353 2368 171965886 171967900 0.000000e+00 2896
5 TraesCS2D01G207200 chr2A 87.500 352 39 1 2659 3005 172044083 172044434 4.670000e-108 401
6 TraesCS2D01G207200 chr2A 93.035 201 14 0 2469 2669 171967936 171968136 8.150000e-76 294
7 TraesCS2D01G207200 chr2A 81.845 336 24 17 19 349 171964605 171964908 6.430000e-62 248


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G207200 chr2D 160612354 160615358 3004 False 5550.0 5550 100.000000 1 3005 1 chr2D.!!$F1 3004
1 TraesCS2D01G207200 chr2B 217432801 217435203 2402 False 1679.5 2976 92.071000 391 2762 2 chr2B.!!$F2 2371
2 TraesCS2D01G207200 chr2A 171964605 171968136 3531 False 1146.0 2896 89.213333 19 2669 3 chr2A.!!$F2 2650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
220 224 0.033699 ATTCTTGGCTTCCTGCTCCC 60.034 55.0 0.0 0.00 42.39 4.30 F
466 1456 0.109689 AAGACTGCTACGTGACGAGC 60.110 55.0 13.7 16.46 39.25 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1791 2822 1.215647 GCTCAGGTCCAGGTACGTG 59.784 63.158 8.61 8.61 36.76 4.49 R
2392 3447 0.252197 ACATTTGGACGCCTCTACCC 59.748 55.000 0.00 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.030641 CGTGATTCGTGATATAATGCCGAG 59.969 45.833 0.00 0.00 34.52 4.63
78 79 0.320508 GTTTCGGGTCAGAGGGTCAC 60.321 60.000 0.00 0.00 0.00 3.67
80 81 0.471211 TTCGGGTCAGAGGGTCACTT 60.471 55.000 0.00 0.00 0.00 3.16
85 86 2.249139 GGTCAGAGGGTCACTTAGTGT 58.751 52.381 12.41 0.00 34.79 3.55
86 87 2.231721 GGTCAGAGGGTCACTTAGTGTC 59.768 54.545 12.41 6.66 34.79 3.67
127 128 3.085010 GCGTGCGCTTTCGTTGTG 61.085 61.111 9.73 0.00 38.26 3.33
143 144 3.302675 CGTTGTGATGTGTGAGTGACTTG 60.303 47.826 0.00 0.00 0.00 3.16
177 178 1.679977 GCTGCCTTCCATGCCTTGA 60.680 57.895 0.00 0.00 0.00 3.02
178 179 1.041447 GCTGCCTTCCATGCCTTGAT 61.041 55.000 0.00 0.00 0.00 2.57
184 185 3.749954 GCCTTCCATGCCTTGATGAGTAT 60.750 47.826 0.00 0.00 0.00 2.12
185 186 3.819337 CCTTCCATGCCTTGATGAGTATG 59.181 47.826 0.00 0.00 0.00 2.39
186 187 2.854963 TCCATGCCTTGATGAGTATGC 58.145 47.619 0.00 0.00 0.00 3.14
190 191 3.475566 TGCCTTGATGAGTATGCTACC 57.524 47.619 0.00 0.00 0.00 3.18
191 192 3.041211 TGCCTTGATGAGTATGCTACCT 58.959 45.455 0.00 0.00 0.00 3.08
192 193 4.223144 TGCCTTGATGAGTATGCTACCTA 58.777 43.478 0.00 0.00 0.00 3.08
193 194 4.039245 TGCCTTGATGAGTATGCTACCTAC 59.961 45.833 0.00 0.00 0.00 3.18
194 195 4.039245 GCCTTGATGAGTATGCTACCTACA 59.961 45.833 0.00 0.00 0.00 2.74
195 196 5.279708 GCCTTGATGAGTATGCTACCTACAT 60.280 44.000 0.00 0.00 0.00 2.29
197 198 7.220030 CCTTGATGAGTATGCTACCTACATTT 58.780 38.462 0.00 0.00 0.00 2.32
198 199 8.367911 CCTTGATGAGTATGCTACCTACATTTA 58.632 37.037 0.00 0.00 0.00 1.40
199 200 9.197694 CTTGATGAGTATGCTACCTACATTTAC 57.802 37.037 0.00 0.00 0.00 2.01
220 224 0.033699 ATTCTTGGCTTCCTGCTCCC 60.034 55.000 0.00 0.00 42.39 4.30
235 239 1.409412 CTCCCGCGATTAATCTCGTG 58.591 55.000 22.34 14.02 46.03 4.35
254 258 7.147312 TCTCGTGAAAAAGATTGCATTTGATT 58.853 30.769 0.00 0.00 0.00 2.57
281 285 5.702865 CATCTCCTTGCAAAAATTTCGAGA 58.297 37.500 0.00 3.07 0.00 4.04
293 297 1.518325 TTTCGAGAAATCCAAGCGCA 58.482 45.000 11.47 0.00 0.00 6.09
311 315 4.688770 AAAAAGGGTTGGGCGTGA 57.311 50.000 0.00 0.00 0.00 4.35
312 316 2.120765 AAAAAGGGTTGGGCGTGAC 58.879 52.632 0.00 0.00 0.00 3.67
313 317 0.684805 AAAAAGGGTTGGGCGTGACA 60.685 50.000 0.00 0.00 0.00 3.58
314 318 0.469144 AAAAGGGTTGGGCGTGACAT 60.469 50.000 0.00 0.00 0.00 3.06
334 338 1.055849 TGTACTCTGGCAAAGGAGCA 58.944 50.000 2.43 0.00 35.83 4.26
349 353 3.305720 AGGAGCATACGTAATTCCTCCA 58.694 45.455 23.94 0.00 40.94 3.86
350 354 3.709653 AGGAGCATACGTAATTCCTCCAA 59.290 43.478 23.94 0.00 40.94 3.53
351 355 4.163458 AGGAGCATACGTAATTCCTCCAAA 59.837 41.667 23.94 0.00 40.94 3.28
378 1356 9.617975 CTGTTTCTTGGATTTAAAAAGCTCTAG 57.382 33.333 0.00 0.00 0.00 2.43
387 1365 7.958025 GGATTTAAAAAGCTCTAGTTGTTCTCG 59.042 37.037 0.00 0.00 0.00 4.04
466 1456 0.109689 AAGACTGCTACGTGACGAGC 60.110 55.000 13.70 16.46 39.25 5.03
467 1457 1.514443 GACTGCTACGTGACGAGCC 60.514 63.158 13.70 0.00 37.94 4.70
468 1458 2.577112 CTGCTACGTGACGAGCCG 60.577 66.667 13.70 9.06 37.94 5.52
469 1459 4.111016 TGCTACGTGACGAGCCGG 62.111 66.667 13.70 0.00 37.94 6.13
470 1460 4.849329 GCTACGTGACGAGCCGGG 62.849 72.222 13.70 0.00 32.25 5.73
471 1461 3.437795 CTACGTGACGAGCCGGGT 61.438 66.667 13.70 5.45 0.00 5.28
472 1462 2.985282 TACGTGACGAGCCGGGTT 60.985 61.111 13.70 0.00 0.00 4.11
473 1463 3.271706 TACGTGACGAGCCGGGTTG 62.272 63.158 19.55 19.55 0.00 3.77
576 1572 0.598158 GCACCAATGGCGCCATATTG 60.598 55.000 40.54 33.66 35.31 1.90
577 1573 1.031235 CACCAATGGCGCCATATTGA 58.969 50.000 40.54 14.17 36.61 2.57
720 1720 2.903350 CGCCATGCCATGCTGCTA 60.903 61.111 0.00 0.00 0.00 3.49
725 1725 1.101635 CATGCCATGCTGCTACTGCT 61.102 55.000 0.00 0.00 40.48 4.24
763 1764 1.611851 AGTCTCTGGGCCACCTCAG 60.612 63.158 0.00 2.09 37.76 3.35
767 1768 4.729918 CTGGGCCACCTCAGCACC 62.730 72.222 0.00 0.00 37.76 5.01
902 1921 1.227205 GCTCAGCTCATCACTCCCG 60.227 63.158 0.00 0.00 0.00 5.14
939 1958 1.695597 CCTTGGCCTCCTCCTCCAT 60.696 63.158 3.32 0.00 0.00 3.41
975 1994 2.952978 GCTGAGCTAGTAGAAGGTAGCA 59.047 50.000 0.00 0.00 43.55 3.49
976 1995 3.004315 GCTGAGCTAGTAGAAGGTAGCAG 59.996 52.174 0.00 0.00 43.55 4.24
979 1998 2.032620 GCTAGTAGAAGGTAGCAGCCA 58.967 52.381 0.00 0.00 41.21 4.75
980 1999 2.223852 GCTAGTAGAAGGTAGCAGCCAC 60.224 54.545 0.00 0.00 41.21 5.01
1550 2581 4.329545 GAACCAGCTCACCGGCCA 62.330 66.667 0.00 0.00 0.00 5.36
1824 2855 3.044059 GAGCCACAACCGCATCAGC 62.044 63.158 0.00 0.00 37.42 4.26
1957 2988 0.602638 CAAGCCCTACGAGCACAACA 60.603 55.000 0.00 0.00 0.00 3.33
1968 2999 3.431055 CACAACATGTGCCACCGT 58.569 55.556 0.00 0.00 41.89 4.83
2129 3167 2.700773 CGGTGCTTTGGGGCTTAGC 61.701 63.158 0.00 0.00 35.50 3.09
2249 3302 4.147449 CCGTCTGGAGATGCGCCA 62.147 66.667 4.18 0.00 37.49 5.69
2262 3315 1.595382 GCGCCAGAGAGTGTGTGTT 60.595 57.895 0.00 0.00 0.00 3.32
2263 3316 1.835483 GCGCCAGAGAGTGTGTGTTG 61.835 60.000 0.00 0.00 0.00 3.33
2271 3326 0.450184 GAGTGTGTGTTGCCGTGTTT 59.550 50.000 0.00 0.00 0.00 2.83
2309 3364 5.614324 TCCCAGTTACCTGATGTATCAAG 57.386 43.478 0.00 0.00 41.50 3.02
2341 3396 9.869757 AATGGTAATTATGTTTGGCTTACTTTC 57.130 29.630 0.00 0.00 0.00 2.62
2363 3418 3.015327 ACATGCTTTTCTGAGAGGCATC 58.985 45.455 13.70 0.00 40.93 3.91
2368 3423 3.366781 GCTTTTCTGAGAGGCATCCAAAC 60.367 47.826 0.00 0.00 0.00 2.93
2371 3426 1.347707 TCTGAGAGGCATCCAAACGTT 59.652 47.619 0.00 0.00 0.00 3.99
2373 3428 2.554032 CTGAGAGGCATCCAAACGTTTT 59.446 45.455 11.66 0.00 0.00 2.43
2374 3429 2.955660 TGAGAGGCATCCAAACGTTTTT 59.044 40.909 11.66 0.00 0.00 1.94
2402 3457 2.762535 TCTTTTTGAGGGTAGAGGCG 57.237 50.000 0.00 0.00 0.00 5.52
2428 3483 2.516227 TGTTGGTTGGTTTGGACTCA 57.484 45.000 0.00 0.00 0.00 3.41
2429 3484 2.808919 TGTTGGTTGGTTTGGACTCAA 58.191 42.857 0.00 0.00 0.00 3.02
2448 3503 4.326826 TCAAGAAATGAACTCGCTGGAAT 58.673 39.130 0.00 0.00 34.30 3.01
2455 3510 1.202348 GAACTCGCTGGAATTTTGGGG 59.798 52.381 0.00 0.00 0.00 4.96
2457 3512 1.203001 ACTCGCTGGAATTTTGGGGAA 60.203 47.619 0.00 0.00 0.00 3.97
2458 3513 1.474077 CTCGCTGGAATTTTGGGGAAG 59.526 52.381 0.00 0.00 0.00 3.46
2518 3635 2.684374 TCAGTTCATGCATGCACATACC 59.316 45.455 27.42 10.21 0.00 2.73
2522 3639 0.317519 CATGCATGCACATACCGCAG 60.318 55.000 25.37 0.69 43.88 5.18
2523 3640 2.025156 GCATGCACATACCGCAGC 59.975 61.111 14.21 0.00 43.88 5.25
2640 3763 6.712095 GTGTTATTGGCTGGAGATGAATCATA 59.288 38.462 0.00 0.00 0.00 2.15
2642 3765 3.777106 TGGCTGGAGATGAATCATACC 57.223 47.619 10.57 10.57 0.00 2.73
2647 3770 2.296190 TGGAGATGAATCATACCCGTCG 59.704 50.000 13.55 0.00 0.00 5.12
2680 3803 3.407252 CACGCAAATAATCATATCGGCG 58.593 45.455 0.00 0.00 43.67 6.46
2719 3842 6.380095 AAGTTATACTAGACCGAAGCTCTG 57.620 41.667 0.00 0.00 0.00 3.35
2740 3863 2.986479 GGCTAAAGCAATCAAAACACCG 59.014 45.455 4.07 0.00 44.36 4.94
2741 3864 3.305064 GGCTAAAGCAATCAAAACACCGA 60.305 43.478 4.07 0.00 44.36 4.69
2742 3865 4.485163 GCTAAAGCAATCAAAACACCGAT 58.515 39.130 0.00 0.00 41.59 4.18
2743 3866 4.923281 GCTAAAGCAATCAAAACACCGATT 59.077 37.500 0.00 0.00 41.59 3.34
2752 3875 5.107109 TCAAAACACCGATTGATGAACTG 57.893 39.130 0.00 0.00 30.94 3.16
2762 3885 4.669965 CGATTGATGAACTGCAACAACGAT 60.670 41.667 0.00 0.00 41.27 3.73
2763 3886 3.811722 TGATGAACTGCAACAACGATC 57.188 42.857 0.00 0.00 0.00 3.69
2764 3887 3.137533 TGATGAACTGCAACAACGATCA 58.862 40.909 0.00 0.00 0.00 2.92
2765 3888 3.752747 TGATGAACTGCAACAACGATCAT 59.247 39.130 0.00 0.00 0.00 2.45
2766 3889 3.811722 TGAACTGCAACAACGATCATC 57.188 42.857 0.00 0.00 0.00 2.92
2767 3890 2.483877 TGAACTGCAACAACGATCATCC 59.516 45.455 0.00 0.00 0.00 3.51
2768 3891 2.183478 ACTGCAACAACGATCATCCA 57.817 45.000 0.00 0.00 0.00 3.41
2769 3892 2.715046 ACTGCAACAACGATCATCCAT 58.285 42.857 0.00 0.00 0.00 3.41
2770 3893 3.872696 ACTGCAACAACGATCATCCATA 58.127 40.909 0.00 0.00 0.00 2.74
2771 3894 4.454678 ACTGCAACAACGATCATCCATAT 58.545 39.130 0.00 0.00 0.00 1.78
2772 3895 4.512944 ACTGCAACAACGATCATCCATATC 59.487 41.667 0.00 0.00 0.00 1.63
2773 3896 4.450053 TGCAACAACGATCATCCATATCA 58.550 39.130 0.00 0.00 0.00 2.15
2774 3897 4.880696 TGCAACAACGATCATCCATATCAA 59.119 37.500 0.00 0.00 0.00 2.57
2775 3898 5.207768 GCAACAACGATCATCCATATCAAC 58.792 41.667 0.00 0.00 0.00 3.18
2776 3899 5.751680 CAACAACGATCATCCATATCAACC 58.248 41.667 0.00 0.00 0.00 3.77
2777 3900 5.034852 ACAACGATCATCCATATCAACCA 57.965 39.130 0.00 0.00 0.00 3.67
2778 3901 5.624159 ACAACGATCATCCATATCAACCAT 58.376 37.500 0.00 0.00 0.00 3.55
2779 3902 6.064060 ACAACGATCATCCATATCAACCATT 58.936 36.000 0.00 0.00 0.00 3.16
2780 3903 6.547141 ACAACGATCATCCATATCAACCATTT 59.453 34.615 0.00 0.00 0.00 2.32
2781 3904 7.719193 ACAACGATCATCCATATCAACCATTTA 59.281 33.333 0.00 0.00 0.00 1.40
2782 3905 8.733458 CAACGATCATCCATATCAACCATTTAT 58.267 33.333 0.00 0.00 0.00 1.40
2783 3906 8.868522 ACGATCATCCATATCAACCATTTATT 57.131 30.769 0.00 0.00 0.00 1.40
2784 3907 8.733458 ACGATCATCCATATCAACCATTTATTG 58.267 33.333 0.00 0.00 0.00 1.90
2785 3908 8.949177 CGATCATCCATATCAACCATTTATTGA 58.051 33.333 0.00 0.00 40.25 2.57
2787 3910 8.993404 TCATCCATATCAACCATTTATTGACA 57.007 30.769 0.00 0.00 38.84 3.58
2788 3911 9.590828 TCATCCATATCAACCATTTATTGACAT 57.409 29.630 0.00 0.00 38.84 3.06
2789 3912 9.850628 CATCCATATCAACCATTTATTGACATC 57.149 33.333 0.00 0.00 38.84 3.06
2790 3913 8.993404 TCCATATCAACCATTTATTGACATCA 57.007 30.769 0.00 0.00 38.84 3.07
2791 3914 8.849168 TCCATATCAACCATTTATTGACATCAC 58.151 33.333 0.00 0.00 38.84 3.06
2792 3915 8.631797 CCATATCAACCATTTATTGACATCACA 58.368 33.333 0.00 0.00 38.84 3.58
2796 3919 9.775854 ATCAACCATTTATTGACATCACAAAAA 57.224 25.926 0.00 0.00 38.84 1.94
2797 3920 9.775854 TCAACCATTTATTGACATCACAAAAAT 57.224 25.926 0.00 0.00 31.11 1.82
2807 3930 8.870160 TTGACATCACAAAAATTACCAGAAAG 57.130 30.769 0.00 0.00 0.00 2.62
2808 3931 7.432869 TGACATCACAAAAATTACCAGAAAGG 58.567 34.615 0.00 0.00 45.67 3.11
2820 3943 3.923017 CCAGAAAGGTTGAATGACACC 57.077 47.619 0.00 0.00 0.00 4.16
2821 3944 3.221771 CCAGAAAGGTTGAATGACACCA 58.778 45.455 0.00 0.00 0.00 4.17
2822 3945 3.636300 CCAGAAAGGTTGAATGACACCAA 59.364 43.478 0.00 0.00 0.00 3.67
2823 3946 4.499696 CCAGAAAGGTTGAATGACACCAAC 60.500 45.833 11.92 11.92 41.24 3.77
2824 3947 3.315191 AGAAAGGTTGAATGACACCAACG 59.685 43.478 13.27 0.00 42.47 4.10
2825 3948 0.951558 AGGTTGAATGACACCAACGC 59.048 50.000 13.27 8.57 42.47 4.84
2826 3949 0.039527 GGTTGAATGACACCAACGCC 60.040 55.000 13.27 1.77 42.47 5.68
2827 3950 0.951558 GTTGAATGACACCAACGCCT 59.048 50.000 6.75 0.00 34.20 5.52
2828 3951 1.336755 GTTGAATGACACCAACGCCTT 59.663 47.619 6.75 0.00 34.20 4.35
2829 3952 1.234821 TGAATGACACCAACGCCTTC 58.765 50.000 0.00 0.00 0.00 3.46
2830 3953 1.234821 GAATGACACCAACGCCTTCA 58.765 50.000 0.00 0.00 0.00 3.02
2831 3954 1.606668 GAATGACACCAACGCCTTCAA 59.393 47.619 0.00 0.00 0.00 2.69
2832 3955 1.686355 ATGACACCAACGCCTTCAAA 58.314 45.000 0.00 0.00 0.00 2.69
2833 3956 1.464734 TGACACCAACGCCTTCAAAA 58.535 45.000 0.00 0.00 0.00 2.44
2834 3957 1.403679 TGACACCAACGCCTTCAAAAG 59.596 47.619 0.00 0.00 0.00 2.27
2847 3970 5.268118 CCTTCAAAAGGGGAATAATGCTC 57.732 43.478 0.00 0.00 45.27 4.26
2848 3971 4.711355 CCTTCAAAAGGGGAATAATGCTCA 59.289 41.667 0.00 0.00 45.27 4.26
2849 3972 5.187576 CCTTCAAAAGGGGAATAATGCTCAA 59.812 40.000 0.00 0.00 45.27 3.02
2850 3973 6.295802 CCTTCAAAAGGGGAATAATGCTCAAA 60.296 38.462 0.00 0.00 45.27 2.69
2851 3974 6.872585 TCAAAAGGGGAATAATGCTCAAAT 57.127 33.333 0.00 0.00 0.00 2.32
2852 3975 6.642430 TCAAAAGGGGAATAATGCTCAAATG 58.358 36.000 0.00 0.00 0.00 2.32
2853 3976 6.440010 TCAAAAGGGGAATAATGCTCAAATGA 59.560 34.615 0.00 0.00 0.00 2.57
2854 3977 5.859205 AAGGGGAATAATGCTCAAATGAC 57.141 39.130 0.00 0.00 0.00 3.06
2855 3978 4.870636 AGGGGAATAATGCTCAAATGACA 58.129 39.130 0.00 0.00 0.00 3.58
2856 3979 5.461327 AGGGGAATAATGCTCAAATGACAT 58.539 37.500 0.00 0.00 0.00 3.06
2857 3980 5.537674 AGGGGAATAATGCTCAAATGACATC 59.462 40.000 0.00 0.00 0.00 3.06
2858 3981 5.279156 GGGGAATAATGCTCAAATGACATCC 60.279 44.000 0.00 0.00 0.00 3.51
2859 3982 5.455392 GGAATAATGCTCAAATGACATCCG 58.545 41.667 0.00 0.00 0.00 4.18
2860 3983 5.443185 AATAATGCTCAAATGACATCCGG 57.557 39.130 0.00 0.00 0.00 5.14
2861 3984 2.715749 ATGCTCAAATGACATCCGGA 57.284 45.000 6.61 6.61 0.00 5.14
2862 3985 2.715749 TGCTCAAATGACATCCGGAT 57.284 45.000 12.38 12.38 0.00 4.18
2863 3986 2.564771 TGCTCAAATGACATCCGGATC 58.435 47.619 15.88 5.96 0.00 3.36
2864 3987 1.876156 GCTCAAATGACATCCGGATCC 59.124 52.381 15.88 10.23 0.00 3.36
2865 3988 2.746142 GCTCAAATGACATCCGGATCCA 60.746 50.000 15.88 15.92 0.00 3.41
2866 3989 3.544684 CTCAAATGACATCCGGATCCAA 58.455 45.455 15.88 2.61 0.00 3.53
2867 3990 3.278574 TCAAATGACATCCGGATCCAAC 58.721 45.455 15.88 6.85 0.00 3.77
2868 3991 3.054434 TCAAATGACATCCGGATCCAACT 60.054 43.478 15.88 4.91 0.00 3.16
2869 3992 4.163268 TCAAATGACATCCGGATCCAACTA 59.837 41.667 15.88 0.00 0.00 2.24
2870 3993 3.753294 ATGACATCCGGATCCAACTAC 57.247 47.619 15.88 1.83 0.00 2.73
2871 3994 2.462723 TGACATCCGGATCCAACTACA 58.537 47.619 15.88 4.45 0.00 2.74
2872 3995 2.835156 TGACATCCGGATCCAACTACAA 59.165 45.455 15.88 0.00 0.00 2.41
2873 3996 3.262151 TGACATCCGGATCCAACTACAAA 59.738 43.478 15.88 0.00 0.00 2.83
2874 3997 3.871594 GACATCCGGATCCAACTACAAAG 59.128 47.826 15.88 0.78 0.00 2.77
2875 3998 3.517901 ACATCCGGATCCAACTACAAAGA 59.482 43.478 15.88 0.00 0.00 2.52
2876 3999 3.887621 TCCGGATCCAACTACAAAGAG 57.112 47.619 13.41 0.00 0.00 2.85
2877 4000 3.170717 TCCGGATCCAACTACAAAGAGT 58.829 45.455 13.41 0.00 0.00 3.24
2878 4001 3.194968 TCCGGATCCAACTACAAAGAGTC 59.805 47.826 13.41 0.00 0.00 3.36
2879 4002 3.056107 CCGGATCCAACTACAAAGAGTCA 60.056 47.826 13.41 0.00 0.00 3.41
2880 4003 4.562757 CCGGATCCAACTACAAAGAGTCAA 60.563 45.833 13.41 0.00 0.00 3.18
2881 4004 4.994852 CGGATCCAACTACAAAGAGTCAAA 59.005 41.667 13.41 0.00 0.00 2.69
2882 4005 5.643777 CGGATCCAACTACAAAGAGTCAAAT 59.356 40.000 13.41 0.00 0.00 2.32
2883 4006 6.183360 CGGATCCAACTACAAAGAGTCAAATC 60.183 42.308 13.41 0.00 0.00 2.17
2884 4007 6.881602 GGATCCAACTACAAAGAGTCAAATCT 59.118 38.462 6.95 0.00 0.00 2.40
2885 4008 7.391833 GGATCCAACTACAAAGAGTCAAATCTT 59.608 37.037 6.95 0.00 41.31 2.40
2886 4009 7.496529 TCCAACTACAAAGAGTCAAATCTTG 57.503 36.000 0.00 0.00 39.47 3.02
2887 4010 6.486657 TCCAACTACAAAGAGTCAAATCTTGG 59.513 38.462 0.00 0.00 39.47 3.61
2888 4011 6.294176 CCAACTACAAAGAGTCAAATCTTGGG 60.294 42.308 0.22 0.00 39.47 4.12
2889 4012 5.941788 ACTACAAAGAGTCAAATCTTGGGT 58.058 37.500 0.22 2.42 39.47 4.51
2890 4013 6.365520 ACTACAAAGAGTCAAATCTTGGGTT 58.634 36.000 0.22 0.00 39.47 4.11
2891 4014 6.833933 ACTACAAAGAGTCAAATCTTGGGTTT 59.166 34.615 0.22 0.00 39.47 3.27
2892 4015 6.544928 ACAAAGAGTCAAATCTTGGGTTTT 57.455 33.333 0.22 0.00 39.47 2.43
2893 4016 6.573434 ACAAAGAGTCAAATCTTGGGTTTTC 58.427 36.000 0.22 0.00 39.47 2.29
2894 4017 6.154363 ACAAAGAGTCAAATCTTGGGTTTTCA 59.846 34.615 0.22 0.00 39.47 2.69
2895 4018 5.774498 AGAGTCAAATCTTGGGTTTTCAC 57.226 39.130 0.00 0.00 0.00 3.18
2896 4019 4.584743 AGAGTCAAATCTTGGGTTTTCACC 59.415 41.667 0.00 0.00 43.37 4.02
2897 4020 3.317993 AGTCAAATCTTGGGTTTTCACCG 59.682 43.478 0.00 0.00 45.39 4.94
2898 4021 3.067601 GTCAAATCTTGGGTTTTCACCGT 59.932 43.478 0.00 0.00 45.39 4.83
2899 4022 3.067461 TCAAATCTTGGGTTTTCACCGTG 59.933 43.478 0.00 0.00 45.39 4.94
2900 4023 2.649531 ATCTTGGGTTTTCACCGTGA 57.350 45.000 0.00 0.00 45.39 4.35
2901 4024 2.421751 TCTTGGGTTTTCACCGTGAA 57.578 45.000 9.99 9.99 45.39 3.18
2902 4025 2.724454 TCTTGGGTTTTCACCGTGAAA 58.276 42.857 20.42 20.42 45.39 2.69
2913 4036 6.411630 TTTCACCGTGAAAATAATAGTCCG 57.588 37.500 21.71 0.00 42.72 4.79
2914 4037 5.327616 TCACCGTGAAAATAATAGTCCGA 57.672 39.130 0.00 0.00 0.00 4.55
2915 4038 5.345702 TCACCGTGAAAATAATAGTCCGAG 58.654 41.667 0.00 0.00 0.00 4.63
2916 4039 5.105635 TCACCGTGAAAATAATAGTCCGAGT 60.106 40.000 0.00 0.00 0.00 4.18
2917 4040 6.095300 TCACCGTGAAAATAATAGTCCGAGTA 59.905 38.462 0.00 0.00 0.00 2.59
2918 4041 6.753279 CACCGTGAAAATAATAGTCCGAGTAA 59.247 38.462 0.00 0.00 0.00 2.24
2919 4042 7.276218 CACCGTGAAAATAATAGTCCGAGTAAA 59.724 37.037 0.00 0.00 0.00 2.01
2920 4043 7.983484 ACCGTGAAAATAATAGTCCGAGTAAAT 59.017 33.333 0.00 0.00 0.00 1.40
2921 4044 8.485591 CCGTGAAAATAATAGTCCGAGTAAATC 58.514 37.037 0.00 0.00 0.00 2.17
2922 4045 9.027129 CGTGAAAATAATAGTCCGAGTAAATCA 57.973 33.333 0.00 0.00 0.00 2.57
2931 4054 5.699839 AGTCCGAGTAAATCAAAACAATGC 58.300 37.500 0.00 0.00 0.00 3.56
2932 4055 4.857037 GTCCGAGTAAATCAAAACAATGCC 59.143 41.667 0.00 0.00 0.00 4.40
2933 4056 4.764823 TCCGAGTAAATCAAAACAATGCCT 59.235 37.500 0.00 0.00 0.00 4.75
2934 4057 5.242838 TCCGAGTAAATCAAAACAATGCCTT 59.757 36.000 0.00 0.00 0.00 4.35
2935 4058 5.572896 CCGAGTAAATCAAAACAATGCCTTC 59.427 40.000 0.00 0.00 0.00 3.46
2936 4059 6.148948 CGAGTAAATCAAAACAATGCCTTCA 58.851 36.000 0.00 0.00 0.00 3.02
2937 4060 6.640499 CGAGTAAATCAAAACAATGCCTTCAA 59.360 34.615 0.00 0.00 0.00 2.69
2938 4061 7.329226 CGAGTAAATCAAAACAATGCCTTCAAT 59.671 33.333 0.00 0.00 0.00 2.57
2939 4062 9.638239 GAGTAAATCAAAACAATGCCTTCAATA 57.362 29.630 0.00 0.00 0.00 1.90
2940 4063 9.995003 AGTAAATCAAAACAATGCCTTCAATAA 57.005 25.926 0.00 0.00 0.00 1.40
2953 4076 5.957842 CCTTCAATAAGGCAACAGTACAA 57.042 39.130 0.00 0.00 45.78 2.41
2954 4077 6.325919 CCTTCAATAAGGCAACAGTACAAA 57.674 37.500 0.00 0.00 45.78 2.83
2955 4078 6.744112 CCTTCAATAAGGCAACAGTACAAAA 58.256 36.000 0.00 0.00 45.78 2.44
2956 4079 6.640907 CCTTCAATAAGGCAACAGTACAAAAC 59.359 38.462 0.00 0.00 45.78 2.43
2957 4080 6.079424 TCAATAAGGCAACAGTACAAAACC 57.921 37.500 0.00 0.00 41.41 3.27
2958 4081 5.594725 TCAATAAGGCAACAGTACAAAACCA 59.405 36.000 0.00 0.00 41.41 3.67
2959 4082 3.793797 AAGGCAACAGTACAAAACCAC 57.206 42.857 0.00 0.00 41.41 4.16
2960 4083 2.028876 AGGCAACAGTACAAAACCACC 58.971 47.619 0.00 0.00 41.41 4.61
2961 4084 1.268845 GGCAACAGTACAAAACCACCG 60.269 52.381 0.00 0.00 0.00 4.94
2962 4085 1.402613 GCAACAGTACAAAACCACCGT 59.597 47.619 0.00 0.00 0.00 4.83
2963 4086 2.540157 GCAACAGTACAAAACCACCGTC 60.540 50.000 0.00 0.00 0.00 4.79
2964 4087 2.678836 CAACAGTACAAAACCACCGTCA 59.321 45.455 0.00 0.00 0.00 4.35
2965 4088 3.202829 ACAGTACAAAACCACCGTCAT 57.797 42.857 0.00 0.00 0.00 3.06
2966 4089 3.547746 ACAGTACAAAACCACCGTCATT 58.452 40.909 0.00 0.00 0.00 2.57
2967 4090 3.949113 ACAGTACAAAACCACCGTCATTT 59.051 39.130 0.00 0.00 0.00 2.32
2968 4091 4.035909 ACAGTACAAAACCACCGTCATTTC 59.964 41.667 0.00 0.00 0.00 2.17
2969 4092 4.035792 CAGTACAAAACCACCGTCATTTCA 59.964 41.667 0.00 0.00 0.00 2.69
2970 4093 3.708563 ACAAAACCACCGTCATTTCAG 57.291 42.857 0.00 0.00 0.00 3.02
2971 4094 2.360801 ACAAAACCACCGTCATTTCAGG 59.639 45.455 0.00 0.00 0.00 3.86
2972 4095 2.621055 CAAAACCACCGTCATTTCAGGA 59.379 45.455 0.00 0.00 0.00 3.86
2973 4096 2.649531 AACCACCGTCATTTCAGGAA 57.350 45.000 0.00 0.00 0.00 3.36
2974 4097 2.879103 ACCACCGTCATTTCAGGAAT 57.121 45.000 0.00 0.00 0.00 3.01
2975 4098 3.992943 ACCACCGTCATTTCAGGAATA 57.007 42.857 0.00 0.00 0.00 1.75
2976 4099 4.295141 ACCACCGTCATTTCAGGAATAA 57.705 40.909 0.00 0.00 0.00 1.40
2977 4100 4.007659 ACCACCGTCATTTCAGGAATAAC 58.992 43.478 0.00 0.00 0.00 1.89
2978 4101 3.377172 CCACCGTCATTTCAGGAATAACC 59.623 47.826 0.00 0.00 39.35 2.85
2979 4102 4.006989 CACCGTCATTTCAGGAATAACCA 58.993 43.478 0.00 0.00 42.04 3.67
2980 4103 4.457603 CACCGTCATTTCAGGAATAACCAA 59.542 41.667 0.00 0.00 42.04 3.67
2981 4104 5.125417 CACCGTCATTTCAGGAATAACCAAT 59.875 40.000 0.00 0.00 42.04 3.16
2982 4105 5.714806 ACCGTCATTTCAGGAATAACCAATT 59.285 36.000 0.00 0.00 42.04 2.32
2983 4106 6.887545 ACCGTCATTTCAGGAATAACCAATTA 59.112 34.615 0.00 0.00 42.04 1.40
2984 4107 7.067008 ACCGTCATTTCAGGAATAACCAATTAG 59.933 37.037 0.00 0.00 42.04 1.73
2985 4108 7.282224 CCGTCATTTCAGGAATAACCAATTAGA 59.718 37.037 0.00 0.00 42.04 2.10
2986 4109 8.338259 CGTCATTTCAGGAATAACCAATTAGAG 58.662 37.037 0.00 0.00 42.04 2.43
2987 4110 9.178758 GTCATTTCAGGAATAACCAATTAGAGT 57.821 33.333 0.00 0.00 42.04 3.24
2991 4114 9.627123 TTTCAGGAATAACCAATTAGAGTATGG 57.373 33.333 0.00 0.00 42.04 2.74
2992 4115 7.224297 TCAGGAATAACCAATTAGAGTATGGC 58.776 38.462 0.00 0.00 42.04 4.40
2993 4116 6.431234 CAGGAATAACCAATTAGAGTATGGCC 59.569 42.308 0.00 0.00 42.04 5.36
2994 4117 6.332901 AGGAATAACCAATTAGAGTATGGCCT 59.667 38.462 3.32 0.00 42.04 5.19
2995 4118 7.004691 GGAATAACCAATTAGAGTATGGCCTT 58.995 38.462 3.32 0.00 37.77 4.35
2996 4119 7.040409 GGAATAACCAATTAGAGTATGGCCTTG 60.040 40.741 3.32 0.00 37.77 3.61
2997 4120 4.170468 ACCAATTAGAGTATGGCCTTGG 57.830 45.455 3.32 8.76 37.77 3.61
2998 4121 3.785887 ACCAATTAGAGTATGGCCTTGGA 59.214 43.478 18.51 0.00 37.77 3.53
2999 4122 4.416848 ACCAATTAGAGTATGGCCTTGGAT 59.583 41.667 18.51 0.21 37.77 3.41
3000 4123 5.103515 ACCAATTAGAGTATGGCCTTGGATT 60.104 40.000 18.51 0.00 37.77 3.01
3001 4124 5.835280 CCAATTAGAGTATGGCCTTGGATTT 59.165 40.000 3.32 0.00 34.88 2.17
3002 4125 6.324770 CCAATTAGAGTATGGCCTTGGATTTT 59.675 38.462 3.32 0.00 34.88 1.82
3003 4126 7.147672 CCAATTAGAGTATGGCCTTGGATTTTT 60.148 37.037 3.32 0.00 34.88 1.94
3004 4127 7.588497 ATTAGAGTATGGCCTTGGATTTTTC 57.412 36.000 3.32 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.201628 GCTCGGCATTATATCACGAATCAC 60.202 45.833 0.00 0.00 32.80 3.06
7 8 3.926527 GCTCGGCATTATATCACGAATCA 59.073 43.478 0.00 0.00 32.80 2.57
8 9 3.307242 GGCTCGGCATTATATCACGAATC 59.693 47.826 0.00 0.00 32.80 2.52
9 10 3.262420 GGCTCGGCATTATATCACGAAT 58.738 45.455 0.00 0.00 32.80 3.34
10 11 2.683968 GGCTCGGCATTATATCACGAA 58.316 47.619 0.00 0.00 32.80 3.85
11 12 1.402325 CGGCTCGGCATTATATCACGA 60.402 52.381 0.00 0.00 0.00 4.35
12 13 0.992072 CGGCTCGGCATTATATCACG 59.008 55.000 0.00 0.00 0.00 4.35
13 14 1.359848 CCGGCTCGGCATTATATCAC 58.640 55.000 0.56 0.00 41.17 3.06
14 15 0.249120 CCCGGCTCGGCATTATATCA 59.751 55.000 7.99 0.00 46.86 2.15
15 16 3.065575 CCCGGCTCGGCATTATATC 57.934 57.895 7.99 0.00 46.86 1.63
78 79 2.103042 GCAGCGGGCAGACACTAAG 61.103 63.158 0.00 0.00 43.97 2.18
103 104 4.705519 AAAGCGCACGCATGGCAC 62.706 61.111 18.24 0.00 44.88 5.01
104 105 4.403137 GAAAGCGCACGCATGGCA 62.403 61.111 18.24 0.00 44.88 4.92
106 107 3.593551 AACGAAAGCGCACGCATGG 62.594 57.895 18.24 9.28 44.88 3.66
107 108 2.127270 AACGAAAGCGCACGCATG 60.127 55.556 18.24 6.08 44.88 4.06
108 109 2.127270 CAACGAAAGCGCACGCAT 60.127 55.556 18.24 1.53 44.88 4.73
109 110 3.568743 ACAACGAAAGCGCACGCA 61.569 55.556 18.24 0.00 44.88 5.24
110 111 2.764251 ATCACAACGAAAGCGCACGC 62.764 55.000 11.47 6.99 42.48 5.34
111 112 1.054348 CATCACAACGAAAGCGCACG 61.054 55.000 11.47 15.05 42.48 5.34
112 113 0.041312 ACATCACAACGAAAGCGCAC 60.041 50.000 11.47 0.00 42.48 5.34
113 114 0.041400 CACATCACAACGAAAGCGCA 60.041 50.000 11.47 0.00 42.48 6.09
114 115 0.041312 ACACATCACAACGAAAGCGC 60.041 50.000 0.00 0.00 42.48 5.92
115 116 1.260297 TCACACATCACAACGAAAGCG 59.740 47.619 0.00 0.00 44.79 4.68
116 117 2.287915 ACTCACACATCACAACGAAAGC 59.712 45.455 0.00 0.00 0.00 3.51
117 118 3.555547 TCACTCACACATCACAACGAAAG 59.444 43.478 0.00 0.00 0.00 2.62
118 119 3.308595 GTCACTCACACATCACAACGAAA 59.691 43.478 0.00 0.00 0.00 3.46
177 178 7.612065 TGGTAAATGTAGGTAGCATACTCAT 57.388 36.000 0.00 0.00 42.51 2.90
178 179 7.612065 ATGGTAAATGTAGGTAGCATACTCA 57.388 36.000 0.00 0.00 42.51 3.41
184 185 6.119536 CCAAGAATGGTAAATGTAGGTAGCA 58.880 40.000 0.00 0.00 42.18 3.49
185 186 6.619801 CCAAGAATGGTAAATGTAGGTAGC 57.380 41.667 0.00 0.00 42.18 3.58
259 263 5.964958 TCTCGAAATTTTTGCAAGGAGAT 57.035 34.783 0.00 0.00 0.00 2.75
261 265 6.089954 GGATTTCTCGAAATTTTTGCAAGGAG 59.910 38.462 0.00 0.10 40.77 3.69
269 273 4.385748 GCGCTTGGATTTCTCGAAATTTTT 59.614 37.500 0.00 0.00 40.77 1.94
273 277 2.083774 TGCGCTTGGATTTCTCGAAAT 58.916 42.857 9.73 4.66 43.14 2.17
302 306 1.346395 AGAGTACAATGTCACGCCCAA 59.654 47.619 0.00 0.00 0.00 4.12
303 307 0.973632 AGAGTACAATGTCACGCCCA 59.026 50.000 0.00 0.00 0.00 5.36
304 308 1.359848 CAGAGTACAATGTCACGCCC 58.640 55.000 0.00 0.00 0.00 6.13
305 309 1.359848 CCAGAGTACAATGTCACGCC 58.640 55.000 0.00 0.00 0.00 5.68
306 310 0.721718 GCCAGAGTACAATGTCACGC 59.278 55.000 0.00 0.00 0.00 5.34
307 311 2.078849 TGCCAGAGTACAATGTCACG 57.921 50.000 0.00 0.00 0.00 4.35
308 312 3.189287 CCTTTGCCAGAGTACAATGTCAC 59.811 47.826 0.00 0.00 0.00 3.67
309 313 3.072330 TCCTTTGCCAGAGTACAATGTCA 59.928 43.478 0.00 0.00 0.00 3.58
310 314 3.674997 TCCTTTGCCAGAGTACAATGTC 58.325 45.455 0.00 0.00 0.00 3.06
311 315 3.679389 CTCCTTTGCCAGAGTACAATGT 58.321 45.455 0.00 0.00 0.00 2.71
312 316 2.421424 GCTCCTTTGCCAGAGTACAATG 59.579 50.000 0.00 0.00 32.47 2.82
313 317 2.040278 TGCTCCTTTGCCAGAGTACAAT 59.960 45.455 0.00 0.00 32.47 2.71
314 318 1.419762 TGCTCCTTTGCCAGAGTACAA 59.580 47.619 0.00 0.00 32.47 2.41
334 338 7.166167 AGAAACAGTTTGGAGGAATTACGTAT 58.834 34.615 2.34 0.00 0.00 3.06
349 353 9.098355 GAGCTTTTTAAATCCAAGAAACAGTTT 57.902 29.630 0.00 0.00 0.00 2.66
350 354 8.478066 AGAGCTTTTTAAATCCAAGAAACAGTT 58.522 29.630 2.90 0.00 0.00 3.16
351 355 8.011844 AGAGCTTTTTAAATCCAAGAAACAGT 57.988 30.769 2.90 0.00 0.00 3.55
378 1356 1.429463 CCTAGCCACACGAGAACAAC 58.571 55.000 0.00 0.00 0.00 3.32
469 1459 0.179076 GCATAATTGGGCTGCCAACC 60.179 55.000 22.05 3.49 32.21 3.77
470 1460 0.528249 CGCATAATTGGGCTGCCAAC 60.528 55.000 22.05 4.31 32.24 3.77
471 1461 1.674764 CCGCATAATTGGGCTGCCAA 61.675 55.000 22.05 6.26 34.59 4.52
472 1462 2.126596 CCGCATAATTGGGCTGCCA 61.127 57.895 22.05 0.00 34.59 4.92
473 1463 1.799258 CTCCGCATAATTGGGCTGCC 61.799 60.000 11.05 11.05 34.59 4.85
474 1464 1.656441 CTCCGCATAATTGGGCTGC 59.344 57.895 0.00 0.00 34.59 5.25
475 1465 1.799258 GCCTCCGCATAATTGGGCTG 61.799 60.000 0.00 0.00 36.96 4.85
476 1466 1.529244 GCCTCCGCATAATTGGGCT 60.529 57.895 0.00 0.00 36.96 5.19
477 1467 2.564721 GGCCTCCGCATAATTGGGC 61.565 63.158 0.00 0.00 38.92 5.36
638 1638 2.047655 CAAGGAGCGGCGGTAACA 60.048 61.111 13.22 0.00 0.00 2.41
696 1696 2.898840 ATGGCATGGCGCGAGAAG 60.899 61.111 12.10 0.00 43.84 2.85
902 1921 1.891919 TGGCGGAAGTGTTGAGTGC 60.892 57.895 0.00 0.00 0.00 4.40
975 1994 4.275508 CTGTGGCTGTGGGTGGCT 62.276 66.667 0.00 0.00 0.00 4.75
1791 2822 1.215647 GCTCAGGTCCAGGTACGTG 59.784 63.158 8.61 8.61 36.76 4.49
1980 3011 3.972971 CTGGTGGCAGCTGCTCTCC 62.973 68.421 35.82 30.80 41.70 3.71
2129 3167 2.417719 GTGCTCCACTCCACTAGTTTG 58.582 52.381 0.00 0.00 35.76 2.93
2249 3302 0.530650 CACGGCAACACACACTCTCT 60.531 55.000 0.00 0.00 0.00 3.10
2262 3315 0.964860 CATCCATCCCAAACACGGCA 60.965 55.000 0.00 0.00 0.00 5.69
2263 3316 1.666209 CCATCCATCCCAAACACGGC 61.666 60.000 0.00 0.00 0.00 5.68
2309 3364 8.996024 AGCCAAACATAATTACCATTTAACAC 57.004 30.769 0.00 0.00 0.00 3.32
2341 3396 2.156917 TGCCTCTCAGAAAAGCATGTG 58.843 47.619 0.00 0.00 0.00 3.21
2373 3428 8.817092 TCTACCCTCAAAAAGAAGAAGAAAAA 57.183 30.769 0.00 0.00 0.00 1.94
2374 3429 7.502561 CCTCTACCCTCAAAAAGAAGAAGAAAA 59.497 37.037 0.00 0.00 0.00 2.29
2375 3430 6.998673 CCTCTACCCTCAAAAAGAAGAAGAAA 59.001 38.462 0.00 0.00 0.00 2.52
2376 3431 6.534634 CCTCTACCCTCAAAAAGAAGAAGAA 58.465 40.000 0.00 0.00 0.00 2.52
2377 3432 5.513267 GCCTCTACCCTCAAAAAGAAGAAGA 60.513 44.000 0.00 0.00 0.00 2.87
2378 3433 4.697828 GCCTCTACCCTCAAAAAGAAGAAG 59.302 45.833 0.00 0.00 0.00 2.85
2379 3434 4.652822 GCCTCTACCCTCAAAAAGAAGAA 58.347 43.478 0.00 0.00 0.00 2.52
2380 3435 3.306780 CGCCTCTACCCTCAAAAAGAAGA 60.307 47.826 0.00 0.00 0.00 2.87
2381 3436 3.003480 CGCCTCTACCCTCAAAAAGAAG 58.997 50.000 0.00 0.00 0.00 2.85
2382 3437 2.370849 ACGCCTCTACCCTCAAAAAGAA 59.629 45.455 0.00 0.00 0.00 2.52
2383 3438 1.975680 ACGCCTCTACCCTCAAAAAGA 59.024 47.619 0.00 0.00 0.00 2.52
2384 3439 2.347731 GACGCCTCTACCCTCAAAAAG 58.652 52.381 0.00 0.00 0.00 2.27
2385 3440 1.002773 GGACGCCTCTACCCTCAAAAA 59.997 52.381 0.00 0.00 0.00 1.94
2386 3441 0.611714 GGACGCCTCTACCCTCAAAA 59.388 55.000 0.00 0.00 0.00 2.44
2387 3442 0.543410 TGGACGCCTCTACCCTCAAA 60.543 55.000 0.00 0.00 0.00 2.69
2388 3443 0.543410 TTGGACGCCTCTACCCTCAA 60.543 55.000 0.00 0.00 0.00 3.02
2389 3444 0.543410 TTTGGACGCCTCTACCCTCA 60.543 55.000 0.00 0.00 0.00 3.86
2390 3445 0.831307 ATTTGGACGCCTCTACCCTC 59.169 55.000 0.00 0.00 0.00 4.30
2391 3446 0.541863 CATTTGGACGCCTCTACCCT 59.458 55.000 0.00 0.00 0.00 4.34
2392 3447 0.252197 ACATTTGGACGCCTCTACCC 59.748 55.000 0.00 0.00 0.00 3.69
2393 3448 1.737793 CAACATTTGGACGCCTCTACC 59.262 52.381 0.00 0.00 0.00 3.18
2428 3483 5.712152 AAATTCCAGCGAGTTCATTTCTT 57.288 34.783 0.00 0.00 0.00 2.52
2429 3484 5.464168 CAAAATTCCAGCGAGTTCATTTCT 58.536 37.500 0.00 0.00 0.00 2.52
2448 3503 4.202524 ACTGTACATGCTACTTCCCCAAAA 60.203 41.667 0.00 0.00 0.00 2.44
2455 3510 4.645588 ACCCTCTACTGTACATGCTACTTC 59.354 45.833 0.00 0.00 0.00 3.01
2457 3512 3.954904 CACCCTCTACTGTACATGCTACT 59.045 47.826 0.00 0.00 0.00 2.57
2458 3513 3.068307 CCACCCTCTACTGTACATGCTAC 59.932 52.174 0.00 0.00 0.00 3.58
2518 3635 0.108472 TCCTTCAGACATCTGCTGCG 60.108 55.000 3.88 0.00 43.46 5.18
2522 3639 4.134379 TCAGAATCCTTCAGACATCTGC 57.866 45.455 3.88 0.00 43.46 4.26
2523 3640 7.049133 AGAATTCAGAATCCTTCAGACATCTG 58.951 38.462 8.44 2.24 45.08 2.90
2545 3662 4.097437 ACGCTGAGTCGGATGTATTTAGAA 59.903 41.667 2.16 0.00 0.00 2.10
2640 3763 1.206132 TGCATTCATTAGTCGACGGGT 59.794 47.619 10.46 0.00 0.00 5.28
2642 3765 1.255342 CGTGCATTCATTAGTCGACGG 59.745 52.381 10.46 1.54 0.00 4.79
2647 3770 6.912051 TGATTATTTGCGTGCATTCATTAGTC 59.088 34.615 0.00 0.00 0.00 2.59
2700 3823 3.147629 GCCAGAGCTTCGGTCTAGTATA 58.852 50.000 4.46 0.00 38.40 1.47
2719 3842 2.986479 CGGTGTTTTGATTGCTTTAGCC 59.014 45.455 0.00 0.00 41.18 3.93
2740 3863 4.145876 TCGTTGTTGCAGTTCATCAATC 57.854 40.909 0.00 0.00 36.92 2.67
2741 3864 4.216042 TGATCGTTGTTGCAGTTCATCAAT 59.784 37.500 0.00 0.00 36.92 2.57
2742 3865 3.563390 TGATCGTTGTTGCAGTTCATCAA 59.437 39.130 0.00 0.00 33.35 2.57
2743 3866 3.137533 TGATCGTTGTTGCAGTTCATCA 58.862 40.909 0.00 0.00 0.00 3.07
2744 3867 3.811722 TGATCGTTGTTGCAGTTCATC 57.188 42.857 0.00 0.00 0.00 2.92
2752 3875 5.207768 GTTGATATGGATGATCGTTGTTGC 58.792 41.667 0.00 0.00 0.00 4.17
2762 3885 8.993404 TGTCAATAAATGGTTGATATGGATGA 57.007 30.769 0.00 0.00 37.84 2.92
2763 3886 9.850628 GATGTCAATAAATGGTTGATATGGATG 57.149 33.333 3.39 0.00 37.48 3.51
2764 3887 9.590828 TGATGTCAATAAATGGTTGATATGGAT 57.409 29.630 3.39 0.00 37.48 3.41
2765 3888 8.849168 GTGATGTCAATAAATGGTTGATATGGA 58.151 33.333 3.39 0.00 37.48 3.41
2766 3889 8.631797 TGTGATGTCAATAAATGGTTGATATGG 58.368 33.333 3.39 0.00 37.48 2.74
2770 3893 9.775854 TTTTTGTGATGTCAATAAATGGTTGAT 57.224 25.926 0.00 0.00 37.84 2.57
2771 3894 9.775854 ATTTTTGTGATGTCAATAAATGGTTGA 57.224 25.926 0.00 0.00 33.46 3.18
2781 3904 9.480053 CTTTCTGGTAATTTTTGTGATGTCAAT 57.520 29.630 0.00 0.00 0.00 2.57
2782 3905 7.925483 CCTTTCTGGTAATTTTTGTGATGTCAA 59.075 33.333 0.00 0.00 0.00 3.18
2783 3906 7.432869 CCTTTCTGGTAATTTTTGTGATGTCA 58.567 34.615 0.00 0.00 0.00 3.58
2784 3907 7.873739 CCTTTCTGGTAATTTTTGTGATGTC 57.126 36.000 0.00 0.00 0.00 3.06
2800 3923 3.221771 TGGTGTCATTCAACCTTTCTGG 58.778 45.455 0.00 0.00 42.93 3.86
2801 3924 4.610945 GTTGGTGTCATTCAACCTTTCTG 58.389 43.478 9.54 0.00 37.77 3.02
2802 3925 3.315191 CGTTGGTGTCATTCAACCTTTCT 59.685 43.478 13.09 0.00 39.84 2.52
2803 3926 3.628017 CGTTGGTGTCATTCAACCTTTC 58.372 45.455 13.09 0.00 39.84 2.62
2804 3927 2.223711 GCGTTGGTGTCATTCAACCTTT 60.224 45.455 13.09 0.00 39.84 3.11
2805 3928 1.336755 GCGTTGGTGTCATTCAACCTT 59.663 47.619 13.09 0.00 39.84 3.50
2806 3929 0.951558 GCGTTGGTGTCATTCAACCT 59.048 50.000 13.09 0.00 39.84 3.50
2807 3930 0.039527 GGCGTTGGTGTCATTCAACC 60.040 55.000 13.09 8.20 39.84 3.77
2808 3931 0.951558 AGGCGTTGGTGTCATTCAAC 59.048 50.000 10.28 10.28 39.66 3.18
2809 3932 1.606668 GAAGGCGTTGGTGTCATTCAA 59.393 47.619 0.00 0.00 0.00 2.69
2810 3933 1.234821 GAAGGCGTTGGTGTCATTCA 58.765 50.000 0.00 0.00 0.00 2.57
2811 3934 1.234821 TGAAGGCGTTGGTGTCATTC 58.765 50.000 0.00 0.00 0.00 2.67
2812 3935 1.686355 TTGAAGGCGTTGGTGTCATT 58.314 45.000 0.00 0.00 0.00 2.57
2813 3936 1.686355 TTTGAAGGCGTTGGTGTCAT 58.314 45.000 0.00 0.00 0.00 3.06
2814 3937 1.403679 CTTTTGAAGGCGTTGGTGTCA 59.596 47.619 0.00 0.00 0.00 3.58
2815 3938 1.269051 CCTTTTGAAGGCGTTGGTGTC 60.269 52.381 0.00 0.00 42.78 3.67
2816 3939 0.744281 CCTTTTGAAGGCGTTGGTGT 59.256 50.000 0.00 0.00 42.78 4.16
2817 3940 3.568093 CCTTTTGAAGGCGTTGGTG 57.432 52.632 0.00 0.00 42.78 4.17
2826 3949 5.920193 TGAGCATTATTCCCCTTTTGAAG 57.080 39.130 0.00 0.00 0.00 3.02
2827 3950 6.678568 TTTGAGCATTATTCCCCTTTTGAA 57.321 33.333 0.00 0.00 0.00 2.69
2828 3951 6.440010 TCATTTGAGCATTATTCCCCTTTTGA 59.560 34.615 0.00 0.00 0.00 2.69
2829 3952 6.536224 GTCATTTGAGCATTATTCCCCTTTTG 59.464 38.462 0.00 0.00 0.00 2.44
2830 3953 6.213195 TGTCATTTGAGCATTATTCCCCTTTT 59.787 34.615 0.00 0.00 0.00 2.27
2831 3954 5.721000 TGTCATTTGAGCATTATTCCCCTTT 59.279 36.000 0.00 0.00 0.00 3.11
2832 3955 5.271598 TGTCATTTGAGCATTATTCCCCTT 58.728 37.500 0.00 0.00 0.00 3.95
2833 3956 4.870636 TGTCATTTGAGCATTATTCCCCT 58.129 39.130 0.00 0.00 0.00 4.79
2834 3957 5.279156 GGATGTCATTTGAGCATTATTCCCC 60.279 44.000 0.00 0.00 0.00 4.81
2835 3958 5.563475 CGGATGTCATTTGAGCATTATTCCC 60.563 44.000 0.00 0.00 0.00 3.97
2836 3959 5.455392 CGGATGTCATTTGAGCATTATTCC 58.545 41.667 0.00 0.00 0.00 3.01
2837 3960 5.239306 TCCGGATGTCATTTGAGCATTATTC 59.761 40.000 0.00 0.00 0.00 1.75
2838 3961 5.132502 TCCGGATGTCATTTGAGCATTATT 58.867 37.500 0.00 0.00 0.00 1.40
2839 3962 4.717877 TCCGGATGTCATTTGAGCATTAT 58.282 39.130 0.00 0.00 0.00 1.28
2840 3963 4.149511 TCCGGATGTCATTTGAGCATTA 57.850 40.909 0.00 0.00 0.00 1.90
2841 3964 3.003394 TCCGGATGTCATTTGAGCATT 57.997 42.857 0.00 0.00 0.00 3.56
2842 3965 2.715749 TCCGGATGTCATTTGAGCAT 57.284 45.000 0.00 0.00 0.00 3.79
2843 3966 2.564771 GATCCGGATGTCATTTGAGCA 58.435 47.619 24.82 0.00 0.00 4.26
2844 3967 1.876156 GGATCCGGATGTCATTTGAGC 59.124 52.381 24.82 2.43 0.00 4.26
2845 3968 3.198409 TGGATCCGGATGTCATTTGAG 57.802 47.619 24.82 0.00 0.00 3.02
2846 3969 3.054434 AGTTGGATCCGGATGTCATTTGA 60.054 43.478 24.82 2.13 0.00 2.69
2847 3970 3.282021 AGTTGGATCCGGATGTCATTTG 58.718 45.455 24.82 0.00 0.00 2.32
2848 3971 3.652057 AGTTGGATCCGGATGTCATTT 57.348 42.857 24.82 8.25 0.00 2.32
2849 3972 3.454447 TGTAGTTGGATCCGGATGTCATT 59.546 43.478 24.82 12.93 0.00 2.57
2850 3973 3.038280 TGTAGTTGGATCCGGATGTCAT 58.962 45.455 24.82 8.51 0.00 3.06
2851 3974 2.462723 TGTAGTTGGATCCGGATGTCA 58.537 47.619 24.82 16.98 0.00 3.58
2852 3975 3.536956 TTGTAGTTGGATCCGGATGTC 57.463 47.619 24.82 14.38 0.00 3.06
2853 3976 3.517901 TCTTTGTAGTTGGATCCGGATGT 59.482 43.478 24.82 0.00 0.00 3.06
2854 3977 4.122776 CTCTTTGTAGTTGGATCCGGATG 58.877 47.826 24.82 2.30 0.00 3.51
2855 3978 3.775316 ACTCTTTGTAGTTGGATCCGGAT 59.225 43.478 19.21 19.21 0.00 4.18
2856 3979 3.170717 ACTCTTTGTAGTTGGATCCGGA 58.829 45.455 6.61 6.61 0.00 5.14
2857 3980 3.056107 TGACTCTTTGTAGTTGGATCCGG 60.056 47.826 7.39 0.00 0.00 5.14
2858 3981 4.188247 TGACTCTTTGTAGTTGGATCCG 57.812 45.455 7.39 0.00 0.00 4.18
2859 3982 6.881602 AGATTTGACTCTTTGTAGTTGGATCC 59.118 38.462 4.20 4.20 0.00 3.36
2860 3983 7.913674 AGATTTGACTCTTTGTAGTTGGATC 57.086 36.000 0.00 0.00 0.00 3.36
2861 3984 7.175641 CCAAGATTTGACTCTTTGTAGTTGGAT 59.824 37.037 0.00 0.00 33.18 3.41
2862 3985 6.486657 CCAAGATTTGACTCTTTGTAGTTGGA 59.513 38.462 0.00 0.00 33.18 3.53
2863 3986 6.294176 CCCAAGATTTGACTCTTTGTAGTTGG 60.294 42.308 0.00 0.00 33.18 3.77
2864 3987 6.263168 ACCCAAGATTTGACTCTTTGTAGTTG 59.737 38.462 0.00 0.00 33.18 3.16
2865 3988 6.365520 ACCCAAGATTTGACTCTTTGTAGTT 58.634 36.000 0.00 0.00 33.18 2.24
2866 3989 5.941788 ACCCAAGATTTGACTCTTTGTAGT 58.058 37.500 0.00 0.00 33.18 2.73
2867 3990 6.884280 AACCCAAGATTTGACTCTTTGTAG 57.116 37.500 0.00 0.00 33.18 2.74
2868 3991 7.340743 TGAAAACCCAAGATTTGACTCTTTGTA 59.659 33.333 0.00 0.00 33.18 2.41
2869 3992 6.154363 TGAAAACCCAAGATTTGACTCTTTGT 59.846 34.615 0.00 0.00 33.18 2.83
2870 3993 6.476706 GTGAAAACCCAAGATTTGACTCTTTG 59.523 38.462 0.00 0.00 33.18 2.77
2871 3994 6.406961 GGTGAAAACCCAAGATTTGACTCTTT 60.407 38.462 0.00 0.00 33.18 2.52
2872 3995 5.069119 GGTGAAAACCCAAGATTTGACTCTT 59.931 40.000 0.00 0.00 35.88 2.85
2873 3996 4.584743 GGTGAAAACCCAAGATTTGACTCT 59.415 41.667 0.00 0.00 0.00 3.24
2874 3997 4.556699 CGGTGAAAACCCAAGATTTGACTC 60.557 45.833 0.00 0.00 0.00 3.36
2875 3998 3.317993 CGGTGAAAACCCAAGATTTGACT 59.682 43.478 0.00 0.00 0.00 3.41
2876 3999 3.067601 ACGGTGAAAACCCAAGATTTGAC 59.932 43.478 0.00 0.00 0.00 3.18
2877 4000 3.067461 CACGGTGAAAACCCAAGATTTGA 59.933 43.478 0.74 0.00 0.00 2.69
2878 4001 3.067461 TCACGGTGAAAACCCAAGATTTG 59.933 43.478 8.68 0.00 0.00 2.32
2879 4002 3.292460 TCACGGTGAAAACCCAAGATTT 58.708 40.909 8.68 0.00 0.00 2.17
2880 4003 2.938838 TCACGGTGAAAACCCAAGATT 58.061 42.857 8.68 0.00 0.00 2.40
2881 4004 2.649531 TCACGGTGAAAACCCAAGAT 57.350 45.000 8.68 0.00 0.00 2.40
2882 4005 2.421751 TTCACGGTGAAAACCCAAGA 57.578 45.000 20.52 0.00 32.71 3.02
2890 4013 6.164876 TCGGACTATTATTTTCACGGTGAAA 58.835 36.000 27.49 27.49 43.84 2.69
2891 4014 5.722263 TCGGACTATTATTTTCACGGTGAA 58.278 37.500 19.07 19.07 34.03 3.18
2892 4015 5.105635 ACTCGGACTATTATTTTCACGGTGA 60.106 40.000 6.76 6.76 0.00 4.02
2893 4016 5.107133 ACTCGGACTATTATTTTCACGGTG 58.893 41.667 0.56 0.56 0.00 4.94
2894 4017 5.334724 ACTCGGACTATTATTTTCACGGT 57.665 39.130 0.00 0.00 0.00 4.83
2895 4018 7.760131 TTTACTCGGACTATTATTTTCACGG 57.240 36.000 0.00 0.00 0.00 4.94
2896 4019 9.027129 TGATTTACTCGGACTATTATTTTCACG 57.973 33.333 0.00 0.00 0.00 4.35
2905 4028 7.968405 GCATTGTTTTGATTTACTCGGACTATT 59.032 33.333 0.00 0.00 0.00 1.73
2906 4029 7.415206 GGCATTGTTTTGATTTACTCGGACTAT 60.415 37.037 0.00 0.00 0.00 2.12
2907 4030 6.128117 GGCATTGTTTTGATTTACTCGGACTA 60.128 38.462 0.00 0.00 0.00 2.59
2908 4031 5.335661 GGCATTGTTTTGATTTACTCGGACT 60.336 40.000 0.00 0.00 0.00 3.85
2909 4032 4.857037 GGCATTGTTTTGATTTACTCGGAC 59.143 41.667 0.00 0.00 0.00 4.79
2910 4033 4.764823 AGGCATTGTTTTGATTTACTCGGA 59.235 37.500 0.00 0.00 0.00 4.55
2911 4034 5.059404 AGGCATTGTTTTGATTTACTCGG 57.941 39.130 0.00 0.00 0.00 4.63
2912 4035 6.148948 TGAAGGCATTGTTTTGATTTACTCG 58.851 36.000 0.00 0.00 0.00 4.18
2913 4036 7.945033 TTGAAGGCATTGTTTTGATTTACTC 57.055 32.000 0.00 0.00 0.00 2.59
2914 4037 9.995003 TTATTGAAGGCATTGTTTTGATTTACT 57.005 25.926 0.00 0.00 0.00 2.24
2916 4039 9.434420 CCTTATTGAAGGCATTGTTTTGATTTA 57.566 29.630 0.00 0.00 45.91 1.40
2917 4040 8.326680 CCTTATTGAAGGCATTGTTTTGATTT 57.673 30.769 0.00 0.00 45.91 2.17
2918 4041 7.910441 CCTTATTGAAGGCATTGTTTTGATT 57.090 32.000 0.00 0.00 45.91 2.57
2932 4055 6.640907 GGTTTTGTACTGTTGCCTTATTGAAG 59.359 38.462 0.00 0.00 0.00 3.02
2933 4056 6.096987 TGGTTTTGTACTGTTGCCTTATTGAA 59.903 34.615 0.00 0.00 0.00 2.69
2934 4057 5.594725 TGGTTTTGTACTGTTGCCTTATTGA 59.405 36.000 0.00 0.00 0.00 2.57
2935 4058 5.689961 GTGGTTTTGTACTGTTGCCTTATTG 59.310 40.000 0.00 0.00 0.00 1.90
2936 4059 5.221362 GGTGGTTTTGTACTGTTGCCTTATT 60.221 40.000 0.00 0.00 0.00 1.40
2937 4060 4.279922 GGTGGTTTTGTACTGTTGCCTTAT 59.720 41.667 0.00 0.00 0.00 1.73
2938 4061 3.633065 GGTGGTTTTGTACTGTTGCCTTA 59.367 43.478 0.00 0.00 0.00 2.69
2939 4062 2.429250 GGTGGTTTTGTACTGTTGCCTT 59.571 45.455 0.00 0.00 0.00 4.35
2940 4063 2.028876 GGTGGTTTTGTACTGTTGCCT 58.971 47.619 0.00 0.00 0.00 4.75
2941 4064 1.268845 CGGTGGTTTTGTACTGTTGCC 60.269 52.381 0.00 0.00 0.00 4.52
2942 4065 1.402613 ACGGTGGTTTTGTACTGTTGC 59.597 47.619 0.00 0.00 32.74 4.17
2943 4066 2.678836 TGACGGTGGTTTTGTACTGTTG 59.321 45.455 0.00 0.00 36.59 3.33
2944 4067 2.988570 TGACGGTGGTTTTGTACTGTT 58.011 42.857 0.00 0.00 36.59 3.16
2945 4068 2.695127 TGACGGTGGTTTTGTACTGT 57.305 45.000 0.00 0.00 39.01 3.55
2946 4069 4.035792 TGAAATGACGGTGGTTTTGTACTG 59.964 41.667 0.00 0.00 0.00 2.74
2947 4070 4.200874 TGAAATGACGGTGGTTTTGTACT 58.799 39.130 0.00 0.00 0.00 2.73
2948 4071 4.533222 CTGAAATGACGGTGGTTTTGTAC 58.467 43.478 0.00 0.00 0.00 2.90
2949 4072 3.566322 CCTGAAATGACGGTGGTTTTGTA 59.434 43.478 0.00 0.00 0.00 2.41
2950 4073 2.360801 CCTGAAATGACGGTGGTTTTGT 59.639 45.455 0.00 0.00 0.00 2.83
2951 4074 2.621055 TCCTGAAATGACGGTGGTTTTG 59.379 45.455 0.00 0.00 0.00 2.44
2952 4075 2.938838 TCCTGAAATGACGGTGGTTTT 58.061 42.857 0.00 0.00 0.00 2.43
2953 4076 2.649531 TCCTGAAATGACGGTGGTTT 57.350 45.000 0.00 0.00 0.00 3.27
2954 4077 2.649531 TTCCTGAAATGACGGTGGTT 57.350 45.000 0.00 0.00 0.00 3.67
2955 4078 2.879103 ATTCCTGAAATGACGGTGGT 57.121 45.000 0.00 0.00 0.00 4.16
2956 4079 3.377172 GGTTATTCCTGAAATGACGGTGG 59.623 47.826 0.00 0.00 35.29 4.61
2957 4080 4.006989 TGGTTATTCCTGAAATGACGGTG 58.993 43.478 0.00 0.00 35.29 4.94
2958 4081 4.295141 TGGTTATTCCTGAAATGACGGT 57.705 40.909 0.00 0.00 35.29 4.83
2959 4082 5.835113 ATTGGTTATTCCTGAAATGACGG 57.165 39.130 0.00 0.00 35.29 4.79
2960 4083 8.208718 TCTAATTGGTTATTCCTGAAATGACG 57.791 34.615 0.00 0.00 35.29 4.35
2961 4084 9.178758 ACTCTAATTGGTTATTCCTGAAATGAC 57.821 33.333 0.00 0.00 34.06 3.06
2965 4088 9.627123 CCATACTCTAATTGGTTATTCCTGAAA 57.373 33.333 0.00 0.00 37.07 2.69
2966 4089 7.719633 GCCATACTCTAATTGGTTATTCCTGAA 59.280 37.037 0.00 0.00 37.07 3.02
2967 4090 7.224297 GCCATACTCTAATTGGTTATTCCTGA 58.776 38.462 0.00 0.00 37.07 3.86
2968 4091 6.431234 GGCCATACTCTAATTGGTTATTCCTG 59.569 42.308 0.00 0.00 37.07 3.86
2969 4092 6.332901 AGGCCATACTCTAATTGGTTATTCCT 59.667 38.462 5.01 0.00 37.07 3.36
2970 4093 6.543735 AGGCCATACTCTAATTGGTTATTCC 58.456 40.000 5.01 0.00 32.90 3.01
2971 4094 7.040409 CCAAGGCCATACTCTAATTGGTTATTC 60.040 40.741 5.01 0.00 32.82 1.75
2972 4095 6.777580 CCAAGGCCATACTCTAATTGGTTATT 59.222 38.462 5.01 0.00 32.82 1.40
2973 4096 6.102615 TCCAAGGCCATACTCTAATTGGTTAT 59.897 38.462 5.01 0.00 37.55 1.89
2974 4097 5.430417 TCCAAGGCCATACTCTAATTGGTTA 59.570 40.000 5.01 0.00 37.55 2.85
2975 4098 4.229582 TCCAAGGCCATACTCTAATTGGTT 59.770 41.667 5.01 0.00 37.55 3.67
2976 4099 3.785887 TCCAAGGCCATACTCTAATTGGT 59.214 43.478 5.01 0.00 37.55 3.67
2977 4100 4.437682 TCCAAGGCCATACTCTAATTGG 57.562 45.455 5.01 6.92 37.62 3.16
2978 4101 6.966534 AAATCCAAGGCCATACTCTAATTG 57.033 37.500 5.01 0.00 0.00 2.32
2979 4102 7.978099 AAAAATCCAAGGCCATACTCTAATT 57.022 32.000 5.01 0.00 0.00 1.40
2980 4103 7.588497 GAAAAATCCAAGGCCATACTCTAAT 57.412 36.000 5.01 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.