Multiple sequence alignment - TraesCS2D01G206900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G206900 chr2D 100.000 3034 0 0 1 3034 160597161 160600194 0.000000e+00 5603.0
1 TraesCS2D01G206900 chr2D 93.281 253 16 1 198 449 575230332 575230584 3.690000e-99 372.0
2 TraesCS2D01G206900 chr2D 92.885 253 17 1 198 449 618294525 618294777 1.720000e-97 366.0
3 TraesCS2D01G206900 chr2D 82.955 88 10 5 3 89 145395038 145395121 1.170000e-09 75.0
4 TraesCS2D01G206900 chr2D 100.000 28 0 0 1030 1057 219170444 219170471 5.000000e-03 52.8
5 TraesCS2D01G206900 chr2B 92.513 2431 90 31 447 2825 217396315 217398705 0.000000e+00 3397.0
6 TraesCS2D01G206900 chr2B 92.228 193 8 1 2842 3034 217398691 217398876 1.790000e-67 267.0
7 TraesCS2D01G206900 chr2B 82.412 199 25 8 1 197 217396135 217396325 6.730000e-37 165.0
8 TraesCS2D01G206900 chr2A 91.783 2361 84 37 480 2765 171947887 171950212 0.000000e+00 3184.0
9 TraesCS2D01G206900 chr2A 93.293 164 9 1 2871 3034 171950266 171950427 1.090000e-59 241.0
10 TraesCS2D01G206900 chr7D 94.071 253 15 0 198 450 141345386 141345638 4.750000e-103 385.0
11 TraesCS2D01G206900 chr7D 92.460 252 18 1 198 449 49806844 49806594 2.880000e-95 359.0
12 TraesCS2D01G206900 chr7D 78.632 117 21 4 6 121 166888365 166888252 1.170000e-09 75.0
13 TraesCS2D01G206900 chr1B 93.254 252 17 0 198 449 484457806 484457555 3.690000e-99 372.0
14 TraesCS2D01G206900 chr5B 92.857 252 17 1 198 449 466687222 466686972 6.180000e-97 364.0
15 TraesCS2D01G206900 chr5B 90.637 267 21 4 201 464 618270108 618269843 4.810000e-93 351.0
16 TraesCS2D01G206900 chr5B 100.000 29 0 0 95 123 662010494 662010466 2.000000e-03 54.7
17 TraesCS2D01G206900 chr4D 92.549 255 17 1 198 450 101499047 101498793 6.180000e-97 364.0
18 TraesCS2D01G206900 chr3B 92.126 254 18 2 198 449 449806595 449806848 1.030000e-94 357.0
19 TraesCS2D01G206900 chr3A 76.800 125 25 4 1 123 11395363 11395485 1.950000e-07 67.6
20 TraesCS2D01G206900 chr6A 87.755 49 4 2 5 52 302782587 302782540 4.230000e-04 56.5
21 TraesCS2D01G206900 chr6A 100.000 29 0 0 5 33 302782636 302782608 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G206900 chr2D 160597161 160600194 3033 False 5603.000000 5603 100.000 1 3034 1 chr2D.!!$F2 3033
1 TraesCS2D01G206900 chr2B 217396135 217398876 2741 False 1276.333333 3397 89.051 1 3034 3 chr2B.!!$F1 3033
2 TraesCS2D01G206900 chr2A 171947887 171950427 2540 False 1712.500000 3184 92.538 480 3034 2 chr2A.!!$F1 2554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 386 0.037326 AGATAGGGTGTGCGTGTGTG 60.037 55.0 0.0 0.0 0.00 3.82 F
391 393 0.041663 GTGTGCGTGTGTGCGTTTAT 60.042 50.0 0.0 0.0 37.81 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 1859 1.194547 CACGGGAGTTTCACATTCACG 59.805 52.381 0.0 0.0 44.67 4.35 R
2044 2089 1.956869 TGATCAAGGAGGAGGAGCAA 58.043 50.000 0.0 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.108687 ACGGACATATACATGATAGCATTGG 58.891 40.000 0.00 0.00 35.96 3.16
31 32 7.989170 GGACATATACATGATAGCATTGGATGA 59.011 37.037 0.00 0.00 35.96 2.92
36 37 1.160137 GATAGCATTGGATGACCGGC 58.840 55.000 0.00 0.00 39.42 6.13
37 38 0.250901 ATAGCATTGGATGACCGGCC 60.251 55.000 0.00 0.00 39.42 6.13
40 41 3.820843 ATTGGATGACCGGCCCCC 61.821 66.667 0.00 0.00 39.42 5.40
44 45 3.239253 GATGACCGGCCCCCGTAT 61.239 66.667 0.00 0.00 46.80 3.06
45 46 3.236003 GATGACCGGCCCCCGTATC 62.236 68.421 0.00 1.13 46.80 2.24
46 47 4.781616 TGACCGGCCCCCGTATCA 62.782 66.667 0.00 3.67 46.80 2.15
47 48 3.925090 GACCGGCCCCCGTATCAG 61.925 72.222 0.00 0.00 46.80 2.90
58 59 0.525668 CCGTATCAGTGTCTGCGGAC 60.526 60.000 19.20 19.20 37.00 4.79
65 66 0.613292 AGTGTCTGCGGACTGATCCT 60.613 55.000 25.54 10.97 43.73 3.24
66 67 0.179124 GTGTCTGCGGACTGATCCTC 60.179 60.000 25.54 0.00 43.73 3.71
68 69 0.820871 GTCTGCGGACTGATCCTCTT 59.179 55.000 18.76 0.00 43.73 2.85
69 70 0.820226 TCTGCGGACTGATCCTCTTG 59.180 55.000 0.00 0.00 43.73 3.02
70 71 0.534412 CTGCGGACTGATCCTCTTGT 59.466 55.000 0.00 0.00 43.73 3.16
71 72 0.532573 TGCGGACTGATCCTCTTGTC 59.467 55.000 0.00 0.00 43.73 3.18
74 75 1.187087 GGACTGATCCTCTTGTCCGT 58.813 55.000 0.00 0.00 42.45 4.69
75 76 2.376109 GGACTGATCCTCTTGTCCGTA 58.624 52.381 0.00 0.00 42.45 4.02
78 79 4.174762 GACTGATCCTCTTGTCCGTAAAC 58.825 47.826 0.00 0.00 0.00 2.01
79 80 3.179830 CTGATCCTCTTGTCCGTAAACG 58.820 50.000 0.00 0.00 39.44 3.60
80 81 1.925185 GATCCTCTTGTCCGTAAACGC 59.075 52.381 0.00 0.00 38.18 4.84
85 87 2.063266 TCTTGTCCGTAAACGCATGTC 58.937 47.619 0.00 0.00 38.18 3.06
87 89 1.009903 TGTCCGTAAACGCATGTCGG 61.010 55.000 12.85 9.01 43.86 4.79
97 99 1.261989 CGCATGTCGGAGCAAATTTG 58.738 50.000 14.03 14.03 33.78 2.32
98 100 2.637563 CGCATGTCGGAGCAAATTTGC 61.638 52.381 31.36 31.36 43.75 3.68
110 112 2.287909 GCAAATTTGCGGGTCAGTGTTA 60.288 45.455 26.15 0.00 45.11 2.41
122 124 3.451178 GGTCAGTGTTAGAGATGCCCTTA 59.549 47.826 0.00 0.00 0.00 2.69
123 125 4.442192 GGTCAGTGTTAGAGATGCCCTTAG 60.442 50.000 0.00 0.00 0.00 2.18
124 126 3.133003 TCAGTGTTAGAGATGCCCTTAGC 59.867 47.826 0.00 0.00 44.14 3.09
162 164 4.616953 GATGGTTTGGCAATTATTACCCG 58.383 43.478 13.87 0.00 0.00 5.28
163 165 2.761208 TGGTTTGGCAATTATTACCCGG 59.239 45.455 13.87 0.00 0.00 5.73
181 183 0.373716 GGTTCTTGCCGCTGATTACG 59.626 55.000 0.00 0.00 0.00 3.18
182 184 1.076332 GTTCTTGCCGCTGATTACGT 58.924 50.000 0.00 0.00 0.00 3.57
184 186 2.658373 TCTTGCCGCTGATTACGTTA 57.342 45.000 0.00 0.00 0.00 3.18
185 187 3.173668 TCTTGCCGCTGATTACGTTAT 57.826 42.857 0.00 0.00 0.00 1.89
186 188 4.310357 TCTTGCCGCTGATTACGTTATA 57.690 40.909 0.00 0.00 0.00 0.98
187 189 4.684877 TCTTGCCGCTGATTACGTTATAA 58.315 39.130 0.00 0.00 0.00 0.98
188 190 5.110598 TCTTGCCGCTGATTACGTTATAAA 58.889 37.500 0.00 0.00 0.00 1.40
189 191 5.756347 TCTTGCCGCTGATTACGTTATAAAT 59.244 36.000 0.00 0.00 0.00 1.40
190 192 5.337219 TGCCGCTGATTACGTTATAAATG 57.663 39.130 0.00 0.00 0.00 2.32
191 193 4.812091 TGCCGCTGATTACGTTATAAATGT 59.188 37.500 0.00 0.00 0.00 2.71
192 194 5.294799 TGCCGCTGATTACGTTATAAATGTT 59.705 36.000 0.00 0.00 0.00 2.71
193 195 5.844396 GCCGCTGATTACGTTATAAATGTTC 59.156 40.000 0.00 0.00 0.00 3.18
194 196 6.510478 GCCGCTGATTACGTTATAAATGTTCA 60.510 38.462 0.00 0.00 0.00 3.18
195 197 7.572759 CCGCTGATTACGTTATAAATGTTCAT 58.427 34.615 0.00 0.00 0.00 2.57
196 198 7.530525 CCGCTGATTACGTTATAAATGTTCATG 59.469 37.037 0.00 0.00 0.00 3.07
197 199 7.058354 CGCTGATTACGTTATAAATGTTCATGC 59.942 37.037 0.00 0.00 0.00 4.06
198 200 7.855409 GCTGATTACGTTATAAATGTTCATGCA 59.145 33.333 0.00 0.00 0.00 3.96
199 201 9.158364 CTGATTACGTTATAAATGTTCATGCAC 57.842 33.333 0.00 0.00 0.00 4.57
200 202 8.126074 TGATTACGTTATAAATGTTCATGCACC 58.874 33.333 0.00 0.00 0.00 5.01
201 203 5.888691 ACGTTATAAATGTTCATGCACCA 57.111 34.783 0.00 0.00 0.00 4.17
202 204 5.879237 ACGTTATAAATGTTCATGCACCAG 58.121 37.500 0.00 0.00 0.00 4.00
203 205 5.163663 ACGTTATAAATGTTCATGCACCAGG 60.164 40.000 0.00 0.00 0.00 4.45
204 206 5.591099 GTTATAAATGTTCATGCACCAGGG 58.409 41.667 0.00 0.00 0.00 4.45
205 207 2.014010 AAATGTTCATGCACCAGGGT 57.986 45.000 0.00 0.00 0.00 4.34
206 208 2.014010 AATGTTCATGCACCAGGGTT 57.986 45.000 0.00 0.00 0.00 4.11
207 209 1.549203 ATGTTCATGCACCAGGGTTC 58.451 50.000 0.00 0.00 0.00 3.62
208 210 0.184692 TGTTCATGCACCAGGGTTCA 59.815 50.000 0.00 0.00 0.00 3.18
209 211 1.327303 GTTCATGCACCAGGGTTCAA 58.673 50.000 0.00 0.00 0.00 2.69
210 212 1.270550 GTTCATGCACCAGGGTTCAAG 59.729 52.381 0.00 0.00 0.00 3.02
211 213 0.478072 TCATGCACCAGGGTTCAAGT 59.522 50.000 0.00 0.00 0.00 3.16
212 214 0.883833 CATGCACCAGGGTTCAAGTC 59.116 55.000 0.00 0.00 0.00 3.01
213 215 0.251341 ATGCACCAGGGTTCAAGTCC 60.251 55.000 0.00 0.00 0.00 3.85
214 216 1.352622 TGCACCAGGGTTCAAGTCCT 61.353 55.000 0.00 0.00 0.00 3.85
218 220 3.329300 CAGGGTTCAAGTCCTGGTG 57.671 57.895 0.00 0.00 44.99 4.17
219 221 0.890996 CAGGGTTCAAGTCCTGGTGC 60.891 60.000 0.00 0.00 44.99 5.01
220 222 1.062488 AGGGTTCAAGTCCTGGTGCT 61.062 55.000 0.00 0.00 31.11 4.40
221 223 0.606673 GGGTTCAAGTCCTGGTGCTC 60.607 60.000 0.00 0.00 0.00 4.26
222 224 0.951040 GGTTCAAGTCCTGGTGCTCG 60.951 60.000 0.00 0.00 0.00 5.03
223 225 1.301716 TTCAAGTCCTGGTGCTCGC 60.302 57.895 0.00 0.00 0.00 5.03
224 226 2.031012 CAAGTCCTGGTGCTCGCA 59.969 61.111 0.00 0.00 0.00 5.10
225 227 1.376424 CAAGTCCTGGTGCTCGCAT 60.376 57.895 0.00 0.00 0.00 4.73
226 228 0.957395 CAAGTCCTGGTGCTCGCATT 60.957 55.000 0.00 0.00 0.00 3.56
227 229 0.250901 AAGTCCTGGTGCTCGCATTT 60.251 50.000 0.00 0.00 0.00 2.32
228 230 0.613260 AGTCCTGGTGCTCGCATTTA 59.387 50.000 0.00 0.00 0.00 1.40
229 231 1.210478 AGTCCTGGTGCTCGCATTTAT 59.790 47.619 0.00 0.00 0.00 1.40
230 232 2.017049 GTCCTGGTGCTCGCATTTATT 58.983 47.619 0.00 0.00 0.00 1.40
231 233 2.032178 GTCCTGGTGCTCGCATTTATTC 59.968 50.000 0.00 0.00 0.00 1.75
232 234 2.016318 CCTGGTGCTCGCATTTATTCA 58.984 47.619 0.00 0.00 0.00 2.57
233 235 2.620115 CCTGGTGCTCGCATTTATTCAT 59.380 45.455 0.00 0.00 0.00 2.57
234 236 3.549423 CCTGGTGCTCGCATTTATTCATG 60.549 47.826 0.00 0.00 0.00 3.07
235 237 3.277715 TGGTGCTCGCATTTATTCATGA 58.722 40.909 0.00 0.00 0.00 3.07
236 238 3.693578 TGGTGCTCGCATTTATTCATGAA 59.306 39.130 11.26 11.26 0.00 2.57
237 239 4.338964 TGGTGCTCGCATTTATTCATGAAT 59.661 37.500 23.75 23.75 34.93 2.57
238 240 5.163530 TGGTGCTCGCATTTATTCATGAATT 60.164 36.000 25.26 5.77 32.50 2.17
239 241 5.750067 GGTGCTCGCATTTATTCATGAATTT 59.250 36.000 25.26 6.52 32.50 1.82
240 242 6.917477 GGTGCTCGCATTTATTCATGAATTTA 59.083 34.615 25.26 14.15 32.50 1.40
241 243 7.596248 GGTGCTCGCATTTATTCATGAATTTAT 59.404 33.333 25.26 15.63 32.50 1.40
242 244 8.971321 GTGCTCGCATTTATTCATGAATTTATT 58.029 29.630 25.26 4.99 32.50 1.40
243 245 9.531942 TGCTCGCATTTATTCATGAATTTATTT 57.468 25.926 25.26 4.24 32.50 1.40
244 246 9.999883 GCTCGCATTTATTCATGAATTTATTTC 57.000 29.630 25.26 10.27 34.72 2.17
256 258 7.706179 TCATGAATTTATTTCAGGATTTTCGGC 59.294 33.333 0.00 0.00 46.94 5.54
257 259 6.033341 TGAATTTATTTCAGGATTTTCGGCG 58.967 36.000 0.00 0.00 39.44 6.46
258 260 5.828299 ATTTATTTCAGGATTTTCGGCGA 57.172 34.783 4.99 4.99 0.00 5.54
259 261 5.828299 TTTATTTCAGGATTTTCGGCGAT 57.172 34.783 11.76 0.00 0.00 4.58
260 262 3.698029 ATTTCAGGATTTTCGGCGATG 57.302 42.857 11.76 4.79 0.00 3.84
261 263 0.732571 TTCAGGATTTTCGGCGATGC 59.267 50.000 11.76 0.31 0.00 3.91
262 264 1.010797 CAGGATTTTCGGCGATGCG 60.011 57.895 11.76 0.00 0.00 4.73
273 275 2.711311 CGATGCGCATTCAGTGGG 59.289 61.111 26.12 4.47 43.21 4.61
274 276 1.815003 CGATGCGCATTCAGTGGGA 60.815 57.895 26.12 0.00 43.02 4.37
275 277 1.769098 CGATGCGCATTCAGTGGGAG 61.769 60.000 26.12 4.12 43.02 4.30
276 278 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
277 279 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
278 280 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
279 281 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
280 282 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
281 283 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
282 284 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
283 285 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
284 286 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
296 298 3.279116 ACGTTCCCGTCGACGACA 61.279 61.111 37.65 21.01 46.28 4.35
297 299 2.051076 CGTTCCCGTCGACGACAA 60.051 61.111 37.65 25.24 41.53 3.18
298 300 2.078914 CGTTCCCGTCGACGACAAG 61.079 63.158 37.65 20.95 41.53 3.16
299 301 1.731969 GTTCCCGTCGACGACAAGG 60.732 63.158 37.65 28.37 43.02 3.61
300 302 2.195567 TTCCCGTCGACGACAAGGT 61.196 57.895 37.65 0.00 43.02 3.50
301 303 2.410638 TTCCCGTCGACGACAAGGTG 62.411 60.000 37.65 19.12 43.02 4.00
302 304 3.103911 CCGTCGACGACAAGGTGC 61.104 66.667 37.65 0.00 43.02 5.01
303 305 3.458579 CGTCGACGACAAGGTGCG 61.459 66.667 33.35 8.02 43.02 5.34
304 306 2.354305 GTCGACGACAAGGTGCGT 60.354 61.111 22.66 0.00 44.33 5.24
305 307 1.081906 GTCGACGACAAGGTGCGTA 60.082 57.895 22.66 0.00 41.34 4.42
306 308 1.081906 TCGACGACAAGGTGCGTAC 60.082 57.895 0.00 0.00 41.34 3.67
307 309 1.370778 CGACGACAAGGTGCGTACA 60.371 57.895 5.86 0.00 41.34 2.90
308 310 0.935831 CGACGACAAGGTGCGTACAA 60.936 55.000 5.86 0.00 41.34 2.41
309 311 1.425412 GACGACAAGGTGCGTACAAT 58.575 50.000 5.86 0.00 41.34 2.71
310 312 1.126113 GACGACAAGGTGCGTACAATG 59.874 52.381 5.86 6.18 41.34 2.82
311 313 1.269883 ACGACAAGGTGCGTACAATGA 60.270 47.619 13.29 0.00 39.21 2.57
312 314 1.126113 CGACAAGGTGCGTACAATGAC 59.874 52.381 13.29 7.38 0.00 3.06
313 315 2.413837 GACAAGGTGCGTACAATGACT 58.586 47.619 13.29 0.00 0.00 3.41
314 316 2.806244 GACAAGGTGCGTACAATGACTT 59.194 45.455 13.29 1.31 0.00 3.01
315 317 2.806244 ACAAGGTGCGTACAATGACTTC 59.194 45.455 13.29 0.00 0.00 3.01
316 318 1.710013 AGGTGCGTACAATGACTTCG 58.290 50.000 5.86 0.00 0.00 3.79
317 319 1.000506 AGGTGCGTACAATGACTTCGT 59.999 47.619 5.86 0.00 0.00 3.85
318 320 2.229543 AGGTGCGTACAATGACTTCGTA 59.770 45.455 5.86 0.00 0.00 3.43
319 321 2.988493 GGTGCGTACAATGACTTCGTAA 59.012 45.455 5.86 0.00 0.00 3.18
320 322 3.429543 GGTGCGTACAATGACTTCGTAAA 59.570 43.478 5.86 0.00 0.00 2.01
321 323 4.092383 GGTGCGTACAATGACTTCGTAAAT 59.908 41.667 5.86 0.00 0.00 1.40
322 324 5.390145 GGTGCGTACAATGACTTCGTAAATT 60.390 40.000 5.86 0.00 0.00 1.82
323 325 6.075280 GTGCGTACAATGACTTCGTAAATTT 58.925 36.000 0.00 0.00 0.00 1.82
324 326 6.245710 GTGCGTACAATGACTTCGTAAATTTC 59.754 38.462 0.00 0.00 0.00 2.17
325 327 6.073711 TGCGTACAATGACTTCGTAAATTTCA 60.074 34.615 0.00 0.00 0.00 2.69
326 328 6.793203 GCGTACAATGACTTCGTAAATTTCAA 59.207 34.615 0.00 0.00 0.00 2.69
327 329 7.006210 GCGTACAATGACTTCGTAAATTTCAAG 59.994 37.037 0.00 0.00 0.00 3.02
328 330 8.218441 CGTACAATGACTTCGTAAATTTCAAGA 58.782 33.333 0.00 0.00 0.00 3.02
330 332 8.955061 ACAATGACTTCGTAAATTTCAAGATG 57.045 30.769 0.00 0.00 0.00 2.90
331 333 8.783093 ACAATGACTTCGTAAATTTCAAGATGA 58.217 29.630 0.00 0.00 0.00 2.92
332 334 9.778993 CAATGACTTCGTAAATTTCAAGATGAT 57.221 29.630 0.00 0.00 0.00 2.45
336 338 9.374960 GACTTCGTAAATTTCAAGATGATATGC 57.625 33.333 0.00 0.00 0.00 3.14
337 339 8.345565 ACTTCGTAAATTTCAAGATGATATGCC 58.654 33.333 0.00 0.00 0.00 4.40
338 340 6.887368 TCGTAAATTTCAAGATGATATGCCG 58.113 36.000 0.00 0.00 0.00 5.69
339 341 6.073276 TCGTAAATTTCAAGATGATATGCCGG 60.073 38.462 0.00 0.00 0.00 6.13
340 342 4.510038 AATTTCAAGATGATATGCCGGC 57.490 40.909 22.73 22.73 0.00 6.13
341 343 2.936919 TTCAAGATGATATGCCGGCT 57.063 45.000 29.70 15.76 0.00 5.52
342 344 2.462456 TCAAGATGATATGCCGGCTC 57.538 50.000 29.70 17.89 0.00 4.70
343 345 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
344 346 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
345 347 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
346 348 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
347 349 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
348 350 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
349 351 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
350 352 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
351 353 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
352 354 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
353 355 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
354 356 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
355 357 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
356 358 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
357 359 1.183549 GGCTCAGTCTTTCGGAGGTA 58.816 55.000 0.00 0.00 38.48 3.08
358 360 1.135053 GGCTCAGTCTTTCGGAGGTAC 60.135 57.143 0.00 0.00 38.48 3.34
375 377 5.933846 AGGTACTCATAGAGATAGGGTGT 57.066 43.478 0.31 0.00 33.32 4.16
376 378 5.636123 AGGTACTCATAGAGATAGGGTGTG 58.364 45.833 0.31 0.00 33.32 3.82
377 379 4.218852 GGTACTCATAGAGATAGGGTGTGC 59.781 50.000 0.31 0.00 33.32 4.57
378 380 2.887783 ACTCATAGAGATAGGGTGTGCG 59.112 50.000 0.31 0.00 33.32 5.34
379 381 2.887783 CTCATAGAGATAGGGTGTGCGT 59.112 50.000 0.00 0.00 0.00 5.24
380 382 2.623416 TCATAGAGATAGGGTGTGCGTG 59.377 50.000 0.00 0.00 0.00 5.34
381 383 2.139323 TAGAGATAGGGTGTGCGTGT 57.861 50.000 0.00 0.00 0.00 4.49
382 384 0.532573 AGAGATAGGGTGTGCGTGTG 59.467 55.000 0.00 0.00 0.00 3.82
383 385 0.246635 GAGATAGGGTGTGCGTGTGT 59.753 55.000 0.00 0.00 0.00 3.72
384 386 0.037326 AGATAGGGTGTGCGTGTGTG 60.037 55.000 0.00 0.00 0.00 3.82
385 387 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
388 390 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
389 391 2.099446 GTGTGCGTGTGTGCGTTT 59.901 55.556 0.00 0.00 37.81 3.60
390 392 1.348938 GTGTGCGTGTGTGCGTTTA 59.651 52.632 0.00 0.00 37.81 2.01
391 393 0.041663 GTGTGCGTGTGTGCGTTTAT 60.042 50.000 0.00 0.00 37.81 1.40
392 394 1.192757 GTGTGCGTGTGTGCGTTTATA 59.807 47.619 0.00 0.00 37.81 0.98
393 395 1.457683 TGTGCGTGTGTGCGTTTATAG 59.542 47.619 0.00 0.00 37.81 1.31
394 396 1.072391 TGCGTGTGTGCGTTTATAGG 58.928 50.000 0.00 0.00 37.81 2.57
395 397 1.336980 TGCGTGTGTGCGTTTATAGGA 60.337 47.619 0.00 0.00 37.81 2.94
396 398 1.323534 GCGTGTGTGCGTTTATAGGAG 59.676 52.381 0.00 0.00 0.00 3.69
397 399 2.602878 CGTGTGTGCGTTTATAGGAGT 58.397 47.619 0.00 0.00 0.00 3.85
398 400 2.344441 CGTGTGTGCGTTTATAGGAGTG 59.656 50.000 0.00 0.00 0.00 3.51
399 401 3.581755 GTGTGTGCGTTTATAGGAGTGA 58.418 45.455 0.00 0.00 0.00 3.41
400 402 3.612860 GTGTGTGCGTTTATAGGAGTGAG 59.387 47.826 0.00 0.00 0.00 3.51
401 403 3.257375 TGTGTGCGTTTATAGGAGTGAGT 59.743 43.478 0.00 0.00 0.00 3.41
402 404 3.612860 GTGTGCGTTTATAGGAGTGAGTG 59.387 47.826 0.00 0.00 0.00 3.51
403 405 3.257375 TGTGCGTTTATAGGAGTGAGTGT 59.743 43.478 0.00 0.00 0.00 3.55
404 406 4.460034 TGTGCGTTTATAGGAGTGAGTGTA 59.540 41.667 0.00 0.00 0.00 2.90
405 407 5.126545 TGTGCGTTTATAGGAGTGAGTGTAT 59.873 40.000 0.00 0.00 0.00 2.29
406 408 5.459107 GTGCGTTTATAGGAGTGAGTGTATG 59.541 44.000 0.00 0.00 0.00 2.39
407 409 4.444720 GCGTTTATAGGAGTGAGTGTATGC 59.555 45.833 0.00 0.00 0.00 3.14
408 410 4.675565 CGTTTATAGGAGTGAGTGTATGCG 59.324 45.833 0.00 0.00 0.00 4.73
409 411 2.802787 ATAGGAGTGAGTGTATGCGC 57.197 50.000 0.00 0.00 0.00 6.09
410 412 0.380733 TAGGAGTGAGTGTATGCGCG 59.619 55.000 0.00 0.00 0.00 6.86
411 413 1.153823 GGAGTGAGTGTATGCGCGT 60.154 57.895 8.43 7.55 0.00 6.01
412 414 1.413767 GGAGTGAGTGTATGCGCGTG 61.414 60.000 13.61 0.00 0.00 5.34
413 415 0.732880 GAGTGAGTGTATGCGCGTGT 60.733 55.000 13.61 0.00 0.00 4.49
414 416 0.524414 AGTGAGTGTATGCGCGTGTA 59.476 50.000 13.61 0.00 0.00 2.90
415 417 1.134367 AGTGAGTGTATGCGCGTGTAT 59.866 47.619 13.61 4.63 0.00 2.29
416 418 2.356695 AGTGAGTGTATGCGCGTGTATA 59.643 45.455 13.61 2.40 0.00 1.47
417 419 3.004419 AGTGAGTGTATGCGCGTGTATAT 59.996 43.478 13.61 0.00 0.00 0.86
418 420 4.214758 AGTGAGTGTATGCGCGTGTATATA 59.785 41.667 13.61 4.77 0.00 0.86
419 421 4.913345 GTGAGTGTATGCGCGTGTATATAA 59.087 41.667 13.61 0.00 0.00 0.98
420 422 5.059343 GTGAGTGTATGCGCGTGTATATAAG 59.941 44.000 13.61 0.00 0.00 1.73
421 423 3.918591 AGTGTATGCGCGTGTATATAAGC 59.081 43.478 13.61 0.00 0.00 3.09
426 428 2.471072 CGCGTGTATATAAGCGCTTG 57.529 50.000 32.23 13.89 46.56 4.01
427 429 1.460267 CGCGTGTATATAAGCGCTTGC 60.460 52.381 32.23 21.73 46.56 4.01
428 430 1.460267 GCGTGTATATAAGCGCTTGCG 60.460 52.381 32.23 21.76 45.48 4.85
429 431 1.784856 CGTGTATATAAGCGCTTGCGT 59.215 47.619 32.23 19.35 45.69 5.24
430 432 2.160143 CGTGTATATAAGCGCTTGCGTC 60.160 50.000 32.23 17.62 45.69 5.19
431 433 3.050619 GTGTATATAAGCGCTTGCGTCT 58.949 45.455 32.23 14.14 45.69 4.18
432 434 4.224433 GTGTATATAAGCGCTTGCGTCTA 58.776 43.478 32.23 11.97 45.69 2.59
433 435 4.857588 GTGTATATAAGCGCTTGCGTCTAT 59.142 41.667 32.23 18.40 45.69 1.98
434 436 6.025896 GTGTATATAAGCGCTTGCGTCTATA 58.974 40.000 32.23 19.94 45.69 1.31
435 437 6.021626 GTGTATATAAGCGCTTGCGTCTATAC 60.022 42.308 32.23 26.58 45.69 1.47
436 438 3.644884 ATAAGCGCTTGCGTCTATACT 57.355 42.857 32.23 3.76 45.69 2.12
437 439 1.560923 AAGCGCTTGCGTCTATACTG 58.439 50.000 24.40 0.00 45.69 2.74
438 440 0.456221 AGCGCTTGCGTCTATACTGT 59.544 50.000 16.38 0.00 45.69 3.55
439 441 0.572590 GCGCTTGCGTCTATACTGTG 59.427 55.000 16.38 0.00 0.00 3.66
440 442 1.909376 CGCTTGCGTCTATACTGTGT 58.091 50.000 6.86 0.00 0.00 3.72
441 443 2.259618 CGCTTGCGTCTATACTGTGTT 58.740 47.619 6.86 0.00 0.00 3.32
442 444 3.431856 CGCTTGCGTCTATACTGTGTTA 58.568 45.455 6.86 0.00 0.00 2.41
443 445 3.855379 CGCTTGCGTCTATACTGTGTTAA 59.145 43.478 6.86 0.00 0.00 2.01
444 446 4.325204 CGCTTGCGTCTATACTGTGTTAAA 59.675 41.667 6.86 0.00 0.00 1.52
445 447 5.164031 CGCTTGCGTCTATACTGTGTTAAAA 60.164 40.000 6.86 0.00 0.00 1.52
567 586 1.386525 ATGATGCATGGTGGAACGGC 61.387 55.000 2.46 0.00 38.12 5.68
656 675 0.577269 CCGGAATAAGAAAGCGCGAG 59.423 55.000 12.10 0.00 0.00 5.03
683 702 1.256812 CACCAAAAGGAGCGGGAATT 58.743 50.000 0.00 0.00 0.00 2.17
687 706 2.094545 CCAAAAGGAGCGGGAATTGAAG 60.095 50.000 0.00 0.00 0.00 3.02
729 748 0.889186 TTTCTTTCCCAGTGCGGCTC 60.889 55.000 0.00 0.00 0.00 4.70
740 759 2.049185 TGCGGCTCCTCTCACTCTC 61.049 63.158 0.00 0.00 0.00 3.20
741 760 1.752694 GCGGCTCCTCTCACTCTCT 60.753 63.158 0.00 0.00 0.00 3.10
742 761 0.464735 GCGGCTCCTCTCACTCTCTA 60.465 60.000 0.00 0.00 0.00 2.43
743 762 2.019668 GCGGCTCCTCTCACTCTCTAA 61.020 57.143 0.00 0.00 0.00 2.10
744 763 1.673920 CGGCTCCTCTCACTCTCTAAC 59.326 57.143 0.00 0.00 0.00 2.34
745 764 2.028876 GGCTCCTCTCACTCTCTAACC 58.971 57.143 0.00 0.00 0.00 2.85
898 922 1.724429 CTTCAGCTGAGCTCCAACTC 58.276 55.000 17.43 0.00 36.40 3.01
930 954 1.522668 TCGCAGATGGTTTCTTGTGG 58.477 50.000 0.00 0.00 29.93 4.17
1048 1078 2.180862 AGCAGCAGCAGCATCATCG 61.181 57.895 12.92 0.00 45.49 3.84
1051 1081 1.087771 CAGCAGCAGCATCATCGTCA 61.088 55.000 3.17 0.00 45.49 4.35
1127 1160 2.711922 CGGTCGAGGTGGAAGAGGG 61.712 68.421 0.00 0.00 0.00 4.30
1746 1791 3.380954 TCAACAAGTACGAGGTACACACA 59.619 43.478 8.46 0.00 41.03 3.72
1749 1794 0.886563 AGTACGAGGTACACACAGCC 59.113 55.000 8.46 0.00 41.03 4.85
1767 1812 2.517127 AGCCCCAATCTTCTCCATCAAT 59.483 45.455 0.00 0.00 0.00 2.57
1793 1838 2.327343 CCACACCACACCATGCTCG 61.327 63.158 0.00 0.00 0.00 5.03
1801 1846 0.671781 ACACCATGCTCGCTCTGAAC 60.672 55.000 0.00 0.00 0.00 3.18
1814 1859 2.034170 GCTCTGAACGAATTCTGATCGC 60.034 50.000 3.52 0.00 43.88 4.58
1928 1973 3.591254 GAAGGCGGAGGACAAGCGT 62.591 63.158 0.00 0.00 0.00 5.07
2102 2162 1.005867 TTTTTACTCGCCGTCGCCT 60.006 52.632 0.00 0.00 35.26 5.52
2125 2185 1.626654 CGTTCACCGCTTCGCTTCAT 61.627 55.000 0.00 0.00 0.00 2.57
2295 2375 0.761187 TGAGTCCAAGTGCAAGAGCT 59.239 50.000 0.00 0.00 42.74 4.09
2332 2420 7.220108 TGTTTTTGTTTTTGTTTTTGTTTCCGG 59.780 29.630 0.00 0.00 0.00 5.14
2425 2524 3.823304 GCCTTCTGAATCACCAGTTTCTT 59.177 43.478 0.00 0.00 35.71 2.52
2432 2531 6.207417 TCTGAATCACCAGTTTCTTGATTTCC 59.793 38.462 0.00 0.00 39.53 3.13
2436 2536 8.421249 AATCACCAGTTTCTTGATTTCCAATA 57.579 30.769 0.00 0.00 36.74 1.90
2441 2541 8.306761 ACCAGTTTCTTGATTTCCAATATTCAC 58.693 33.333 0.00 0.00 33.68 3.18
2450 2550 2.980568 TCCAATATTCACCCGTGTCAC 58.019 47.619 0.00 0.00 0.00 3.67
2454 2554 5.104693 TCCAATATTCACCCGTGTCACTTAT 60.105 40.000 0.65 0.00 0.00 1.73
2463 2563 4.250464 CCCGTGTCACTTATTTTCAGCTA 58.750 43.478 0.65 0.00 0.00 3.32
2483 2583 6.254589 CAGCTAAATAGTTCTTTCTCTGTCCG 59.745 42.308 0.00 0.00 0.00 4.79
2484 2584 5.520649 GCTAAATAGTTCTTTCTCTGTCCGG 59.479 44.000 0.00 0.00 0.00 5.14
2485 2585 3.528597 ATAGTTCTTTCTCTGTCCGGC 57.471 47.619 0.00 0.00 0.00 6.13
2486 2586 1.343069 AGTTCTTTCTCTGTCCGGCT 58.657 50.000 0.00 0.00 0.00 5.52
2487 2587 1.694696 AGTTCTTTCTCTGTCCGGCTT 59.305 47.619 0.00 0.00 0.00 4.35
2488 2588 2.070028 GTTCTTTCTCTGTCCGGCTTC 58.930 52.381 0.00 0.00 0.00 3.86
2489 2589 1.633774 TCTTTCTCTGTCCGGCTTCT 58.366 50.000 0.00 0.00 0.00 2.85
2490 2590 1.971357 TCTTTCTCTGTCCGGCTTCTT 59.029 47.619 0.00 0.00 0.00 2.52
2491 2591 2.368875 TCTTTCTCTGTCCGGCTTCTTT 59.631 45.455 0.00 0.00 0.00 2.52
2492 2592 2.930826 TTCTCTGTCCGGCTTCTTTT 57.069 45.000 0.00 0.00 0.00 2.27
2493 2593 4.039973 TCTTTCTCTGTCCGGCTTCTTTTA 59.960 41.667 0.00 0.00 0.00 1.52
2494 2594 4.553330 TTCTCTGTCCGGCTTCTTTTAT 57.447 40.909 0.00 0.00 0.00 1.40
2495 2595 4.553330 TCTCTGTCCGGCTTCTTTTATT 57.447 40.909 0.00 0.00 0.00 1.40
2496 2596 4.253685 TCTCTGTCCGGCTTCTTTTATTG 58.746 43.478 0.00 0.00 0.00 1.90
2497 2597 4.003648 CTCTGTCCGGCTTCTTTTATTGT 58.996 43.478 0.00 0.00 0.00 2.71
2498 2598 4.000988 TCTGTCCGGCTTCTTTTATTGTC 58.999 43.478 0.00 0.00 0.00 3.18
2499 2599 4.003648 CTGTCCGGCTTCTTTTATTGTCT 58.996 43.478 0.00 0.00 0.00 3.41
2500 2600 4.000988 TGTCCGGCTTCTTTTATTGTCTC 58.999 43.478 0.00 0.00 0.00 3.36
2501 2601 4.000988 GTCCGGCTTCTTTTATTGTCTCA 58.999 43.478 0.00 0.00 0.00 3.27
2531 2631 4.475944 CTTGTCCGGCTTCTTTTATTGTG 58.524 43.478 0.00 0.00 0.00 3.33
2627 2727 7.167136 GCTTTTGTTTTGACTTCTGAAGATCTG 59.833 37.037 23.36 0.00 0.00 2.90
2663 2763 6.797033 GTCAAACGATCAGTAATTTGGAACTG 59.203 38.462 0.00 0.41 43.63 3.16
2686 2789 8.258708 ACTGAAGTACTAAACTGAGTTTTCTGT 58.741 33.333 16.49 12.57 38.88 3.41
2708 2811 0.816421 TGATGATGGCATGCGACCTG 60.816 55.000 12.44 0.00 34.11 4.00
2771 2875 0.174845 CACCGGCAGAACGAGGATTA 59.825 55.000 0.00 0.00 35.47 1.75
2776 2880 2.541556 GGCAGAACGAGGATTACAGTC 58.458 52.381 0.00 0.00 0.00 3.51
2809 2913 3.317150 CTGCTCACTCAATTGTCACGTA 58.683 45.455 5.13 0.00 0.00 3.57
2816 2920 3.183775 ACTCAATTGTCACGTAAACGAGC 59.816 43.478 9.86 0.00 43.02 5.03
2817 2921 3.386486 TCAATTGTCACGTAAACGAGCT 58.614 40.909 9.86 0.00 43.02 4.09
2818 2922 3.183574 TCAATTGTCACGTAAACGAGCTG 59.816 43.478 9.86 0.00 43.02 4.24
2819 2923 2.495409 TTGTCACGTAAACGAGCTGA 57.505 45.000 9.86 0.00 43.02 4.26
2820 2924 2.046283 TGTCACGTAAACGAGCTGAG 57.954 50.000 9.86 0.00 43.02 3.35
2821 2925 1.605232 TGTCACGTAAACGAGCTGAGA 59.395 47.619 9.86 0.00 43.02 3.27
2822 2926 2.243407 GTCACGTAAACGAGCTGAGAG 58.757 52.381 9.86 0.00 43.02 3.20
2823 2927 1.878088 TCACGTAAACGAGCTGAGAGT 59.122 47.619 9.86 0.00 43.02 3.24
2824 2928 2.095869 TCACGTAAACGAGCTGAGAGTC 60.096 50.000 9.86 0.00 43.02 3.36
2825 2929 1.199558 ACGTAAACGAGCTGAGAGTCC 59.800 52.381 9.86 0.00 43.02 3.85
2826 2930 1.790838 CGTAAACGAGCTGAGAGTCCG 60.791 57.143 0.00 0.00 43.02 4.79
2827 2931 1.199558 GTAAACGAGCTGAGAGTCCGT 59.800 52.381 0.00 0.00 34.74 4.69
2828 2932 1.531423 AAACGAGCTGAGAGTCCGTA 58.469 50.000 0.00 0.00 32.81 4.02
2829 2933 1.752683 AACGAGCTGAGAGTCCGTAT 58.247 50.000 0.00 0.00 32.81 3.06
2830 2934 1.752683 ACGAGCTGAGAGTCCGTATT 58.247 50.000 0.00 0.00 0.00 1.89
2831 2935 1.671845 ACGAGCTGAGAGTCCGTATTC 59.328 52.381 0.00 0.00 0.00 1.75
2832 2936 1.333347 CGAGCTGAGAGTCCGTATTCG 60.333 57.143 0.00 0.00 0.00 3.34
2833 2937 1.941294 GAGCTGAGAGTCCGTATTCGA 59.059 52.381 0.00 0.00 39.71 3.71
2834 2938 1.944024 AGCTGAGAGTCCGTATTCGAG 59.056 52.381 0.00 0.00 39.71 4.04
2835 2939 1.941294 GCTGAGAGTCCGTATTCGAGA 59.059 52.381 0.00 0.00 39.71 4.04
2836 2940 2.355132 GCTGAGAGTCCGTATTCGAGAA 59.645 50.000 0.00 0.00 39.71 2.87
2837 2941 3.181499 GCTGAGAGTCCGTATTCGAGAAA 60.181 47.826 0.00 0.00 39.71 2.52
2838 2942 4.674623 GCTGAGAGTCCGTATTCGAGAAAA 60.675 45.833 0.00 0.00 39.71 2.29
2839 2943 5.381174 TGAGAGTCCGTATTCGAGAAAAA 57.619 39.130 0.00 0.00 39.71 1.94
2907 3033 7.169813 CACACATAACACATATCTGAGCGTATT 59.830 37.037 0.00 0.00 0.00 1.89
2917 3043 5.565592 ATCTGAGCGTATTCATTGCAAAA 57.434 34.783 1.71 0.00 0.00 2.44
2996 3122 4.887071 ACAACCAAGCTCAACTAACATGAA 59.113 37.500 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.256539 CCAATGCTATCATGTATATGTCCGTC 59.743 42.308 0.00 0.00 35.73 4.79
36 37 1.144057 GCAGACACTGATACGGGGG 59.856 63.158 2.81 0.00 32.44 5.40
37 38 1.226974 CGCAGACACTGATACGGGG 60.227 63.158 2.81 0.00 32.44 5.73
40 41 0.452184 AGTCCGCAGACACTGATACG 59.548 55.000 2.32 0.00 46.15 3.06
41 42 1.472878 TCAGTCCGCAGACACTGATAC 59.527 52.381 2.32 0.00 46.15 2.24
42 43 1.834188 TCAGTCCGCAGACACTGATA 58.166 50.000 2.32 0.00 46.15 2.15
43 44 1.189752 ATCAGTCCGCAGACACTGAT 58.810 50.000 8.45 8.45 46.00 2.90
44 45 0.528017 GATCAGTCCGCAGACACTGA 59.472 55.000 2.32 4.33 46.21 3.41
45 46 0.459237 GGATCAGTCCGCAGACACTG 60.459 60.000 2.32 0.00 46.15 3.66
46 47 1.893786 GGATCAGTCCGCAGACACT 59.106 57.895 2.32 0.00 46.15 3.55
47 48 4.504132 GGATCAGTCCGCAGACAC 57.496 61.111 2.32 0.00 46.15 3.67
58 59 3.179830 CGTTTACGGACAAGAGGATCAG 58.820 50.000 0.00 0.00 34.30 2.90
65 66 2.063266 GACATGCGTTTACGGACAAGA 58.937 47.619 4.29 0.00 43.72 3.02
66 67 1.201769 CGACATGCGTTTACGGACAAG 60.202 52.381 4.29 0.00 43.72 3.16
68 69 1.009903 CCGACATGCGTTTACGGACA 61.010 55.000 8.84 0.00 43.72 4.02
69 70 0.733566 TCCGACATGCGTTTACGGAC 60.734 55.000 12.02 0.00 45.87 4.79
70 71 4.172346 CCGACATGCGTTTACGGA 57.828 55.556 8.84 1.13 45.31 4.69
71 72 1.995991 CTCCGACATGCGTTTACGG 59.004 57.895 4.29 0.00 44.09 4.02
73 74 0.793861 TTGCTCCGACATGCGTTTAC 59.206 50.000 8.37 0.00 38.67 2.01
74 75 1.514003 TTTGCTCCGACATGCGTTTA 58.486 45.000 8.37 0.00 38.67 2.01
75 76 0.881118 ATTTGCTCCGACATGCGTTT 59.119 45.000 8.37 0.00 38.67 3.60
78 79 1.261989 CAAATTTGCTCCGACATGCG 58.738 50.000 5.01 0.00 40.47 4.73
97 99 1.927895 CATCTCTAACACTGACCCGC 58.072 55.000 0.00 0.00 0.00 6.13
98 100 1.471676 GGCATCTCTAACACTGACCCG 60.472 57.143 0.00 0.00 0.00 5.28
130 132 1.405526 GCCAAACCATCGAGCTAGTGA 60.406 52.381 0.00 0.00 0.00 3.41
162 164 0.373716 CGTAATCAGCGGCAAGAACC 59.626 55.000 1.45 0.00 0.00 3.62
163 165 1.076332 ACGTAATCAGCGGCAAGAAC 58.924 50.000 1.45 0.00 0.00 3.01
172 174 7.855409 TGCATGAACATTTATAACGTAATCAGC 59.145 33.333 0.00 0.00 0.00 4.26
173 175 9.158364 GTGCATGAACATTTATAACGTAATCAG 57.842 33.333 0.00 0.00 0.00 2.90
181 183 5.127031 ACCCTGGTGCATGAACATTTATAAC 59.873 40.000 6.08 0.00 0.00 1.89
182 184 5.268387 ACCCTGGTGCATGAACATTTATAA 58.732 37.500 6.08 0.00 0.00 0.98
184 186 3.711863 ACCCTGGTGCATGAACATTTAT 58.288 40.909 6.08 0.00 0.00 1.40
185 187 3.168035 ACCCTGGTGCATGAACATTTA 57.832 42.857 6.08 0.00 0.00 1.40
186 188 2.014010 ACCCTGGTGCATGAACATTT 57.986 45.000 6.08 0.00 0.00 2.32
187 189 1.895131 GAACCCTGGTGCATGAACATT 59.105 47.619 6.08 0.00 0.00 2.71
188 190 1.203038 TGAACCCTGGTGCATGAACAT 60.203 47.619 6.08 0.00 0.00 2.71
189 191 0.184692 TGAACCCTGGTGCATGAACA 59.815 50.000 6.08 0.00 0.00 3.18
190 192 1.270550 CTTGAACCCTGGTGCATGAAC 59.729 52.381 4.51 0.00 33.01 3.18
191 193 1.133513 ACTTGAACCCTGGTGCATGAA 60.134 47.619 15.25 0.00 33.01 2.57
192 194 0.478072 ACTTGAACCCTGGTGCATGA 59.522 50.000 15.25 0.00 33.01 3.07
193 195 0.883833 GACTTGAACCCTGGTGCATG 59.116 55.000 8.32 8.32 33.01 4.06
194 196 0.251341 GGACTTGAACCCTGGTGCAT 60.251 55.000 0.00 0.00 33.01 3.96
195 197 1.150536 GGACTTGAACCCTGGTGCA 59.849 57.895 0.00 0.00 0.00 4.57
196 198 0.890996 CAGGACTTGAACCCTGGTGC 60.891 60.000 0.00 0.00 44.68 5.01
197 199 3.329300 CAGGACTTGAACCCTGGTG 57.671 57.895 0.00 0.00 44.68 4.17
201 203 1.062488 AGCACCAGGACTTGAACCCT 61.062 55.000 0.00 0.00 0.00 4.34
202 204 0.606673 GAGCACCAGGACTTGAACCC 60.607 60.000 0.00 0.00 0.00 4.11
203 205 0.951040 CGAGCACCAGGACTTGAACC 60.951 60.000 0.00 0.00 0.00 3.62
204 206 1.569479 GCGAGCACCAGGACTTGAAC 61.569 60.000 0.00 0.00 0.00 3.18
205 207 1.301716 GCGAGCACCAGGACTTGAA 60.302 57.895 0.00 0.00 0.00 2.69
206 208 1.830587 ATGCGAGCACCAGGACTTGA 61.831 55.000 0.00 0.00 0.00 3.02
207 209 0.957395 AATGCGAGCACCAGGACTTG 60.957 55.000 0.00 0.00 0.00 3.16
208 210 0.250901 AAATGCGAGCACCAGGACTT 60.251 50.000 0.00 0.00 0.00 3.01
209 211 0.613260 TAAATGCGAGCACCAGGACT 59.387 50.000 0.00 0.00 0.00 3.85
210 212 1.668419 ATAAATGCGAGCACCAGGAC 58.332 50.000 0.00 0.00 0.00 3.85
211 213 2.288666 GAATAAATGCGAGCACCAGGA 58.711 47.619 0.00 0.00 0.00 3.86
212 214 2.016318 TGAATAAATGCGAGCACCAGG 58.984 47.619 0.00 0.00 0.00 4.45
213 215 3.313249 TCATGAATAAATGCGAGCACCAG 59.687 43.478 0.00 0.00 0.00 4.00
214 216 3.277715 TCATGAATAAATGCGAGCACCA 58.722 40.909 0.00 0.00 0.00 4.17
215 217 3.969117 TCATGAATAAATGCGAGCACC 57.031 42.857 0.00 0.00 0.00 5.01
216 218 6.817270 AAATTCATGAATAAATGCGAGCAC 57.183 33.333 21.00 0.00 0.00 4.40
217 219 9.531942 AAATAAATTCATGAATAAATGCGAGCA 57.468 25.926 21.00 0.00 0.00 4.26
218 220 9.999883 GAAATAAATTCATGAATAAATGCGAGC 57.000 29.630 21.00 3.01 37.99 5.03
229 231 9.585099 CCGAAAATCCTGAAATAAATTCATGAA 57.415 29.630 11.26 11.26 46.62 2.57
230 232 7.706179 GCCGAAAATCCTGAAATAAATTCATGA 59.294 33.333 0.00 0.00 46.62 3.07
231 233 7.306167 CGCCGAAAATCCTGAAATAAATTCATG 60.306 37.037 0.00 0.00 46.62 3.07
232 234 6.697019 CGCCGAAAATCCTGAAATAAATTCAT 59.303 34.615 0.00 0.00 46.62 2.57
233 235 6.033341 CGCCGAAAATCCTGAAATAAATTCA 58.967 36.000 0.00 0.00 45.71 2.57
234 236 6.262601 TCGCCGAAAATCCTGAAATAAATTC 58.737 36.000 0.00 0.00 38.60 2.17
235 237 6.202516 TCGCCGAAAATCCTGAAATAAATT 57.797 33.333 0.00 0.00 0.00 1.82
236 238 5.828299 TCGCCGAAAATCCTGAAATAAAT 57.172 34.783 0.00 0.00 0.00 1.40
237 239 5.577835 CATCGCCGAAAATCCTGAAATAAA 58.422 37.500 0.00 0.00 0.00 1.40
238 240 4.497340 GCATCGCCGAAAATCCTGAAATAA 60.497 41.667 0.00 0.00 0.00 1.40
239 241 3.003275 GCATCGCCGAAAATCCTGAAATA 59.997 43.478 0.00 0.00 0.00 1.40
240 242 2.223572 GCATCGCCGAAAATCCTGAAAT 60.224 45.455 0.00 0.00 0.00 2.17
241 243 1.132262 GCATCGCCGAAAATCCTGAAA 59.868 47.619 0.00 0.00 0.00 2.69
242 244 0.732571 GCATCGCCGAAAATCCTGAA 59.267 50.000 0.00 0.00 0.00 3.02
243 245 1.428370 CGCATCGCCGAAAATCCTGA 61.428 55.000 0.00 0.00 0.00 3.86
244 246 1.010797 CGCATCGCCGAAAATCCTG 60.011 57.895 0.00 0.00 0.00 3.86
245 247 3.409856 CGCATCGCCGAAAATCCT 58.590 55.556 0.00 0.00 0.00 3.24
256 258 1.769098 CTCCCACTGAATGCGCATCG 61.769 60.000 25.53 17.09 0.00 3.84
257 259 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
258 260 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
259 261 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
260 262 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
261 263 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
262 264 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
263 265 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
264 266 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
265 267 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
266 268 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
267 269 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
268 270 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
281 283 1.731969 CCTTGTCGTCGACGGGAAC 60.732 63.158 35.05 26.09 40.29 3.62
282 284 2.195567 ACCTTGTCGTCGACGGGAA 61.196 57.895 35.05 25.26 40.29 3.97
283 285 2.595463 ACCTTGTCGTCGACGGGA 60.595 61.111 35.05 20.33 40.29 5.14
284 286 2.430244 CACCTTGTCGTCGACGGG 60.430 66.667 35.05 28.87 40.29 5.28
285 287 3.103911 GCACCTTGTCGTCGACGG 61.104 66.667 35.05 21.82 40.29 4.79
286 288 2.769000 TACGCACCTTGTCGTCGACG 62.769 60.000 31.30 31.30 39.79 5.12
287 289 1.081906 TACGCACCTTGTCGTCGAC 60.082 57.895 18.51 18.51 39.79 4.20
288 290 1.081906 GTACGCACCTTGTCGTCGA 60.082 57.895 0.00 0.00 39.79 4.20
289 291 0.935831 TTGTACGCACCTTGTCGTCG 60.936 55.000 0.00 0.00 39.79 5.12
290 292 1.126113 CATTGTACGCACCTTGTCGTC 59.874 52.381 0.00 0.00 39.79 4.20
291 293 1.144969 CATTGTACGCACCTTGTCGT 58.855 50.000 0.00 0.00 42.09 4.34
292 294 1.126113 GTCATTGTACGCACCTTGTCG 59.874 52.381 0.00 0.00 0.00 4.35
293 295 2.413837 AGTCATTGTACGCACCTTGTC 58.586 47.619 0.00 0.00 0.00 3.18
294 296 2.543777 AGTCATTGTACGCACCTTGT 57.456 45.000 0.00 0.00 0.00 3.16
295 297 2.159841 CGAAGTCATTGTACGCACCTTG 60.160 50.000 0.00 0.00 0.00 3.61
296 298 2.066262 CGAAGTCATTGTACGCACCTT 58.934 47.619 0.00 0.00 0.00 3.50
297 299 1.000506 ACGAAGTCATTGTACGCACCT 59.999 47.619 0.00 0.00 29.74 4.00
298 300 1.425412 ACGAAGTCATTGTACGCACC 58.575 50.000 0.00 0.00 29.74 5.01
299 301 4.634349 TTTACGAAGTCATTGTACGCAC 57.366 40.909 0.00 0.00 43.93 5.34
300 302 5.849357 AATTTACGAAGTCATTGTACGCA 57.151 34.783 0.00 0.00 43.93 5.24
301 303 6.301108 TGAAATTTACGAAGTCATTGTACGC 58.699 36.000 0.00 0.00 43.93 4.42
302 304 8.218441 TCTTGAAATTTACGAAGTCATTGTACG 58.782 33.333 0.00 0.00 43.93 3.67
305 307 8.783093 TCATCTTGAAATTTACGAAGTCATTGT 58.217 29.630 0.00 0.00 43.93 2.71
306 308 9.778993 ATCATCTTGAAATTTACGAAGTCATTG 57.221 29.630 0.00 0.00 43.93 2.82
310 312 9.374960 GCATATCATCTTGAAATTTACGAAGTC 57.625 33.333 0.00 0.00 43.93 3.01
312 314 7.531871 CGGCATATCATCTTGAAATTTACGAAG 59.468 37.037 0.00 0.00 0.00 3.79
313 315 7.351981 CGGCATATCATCTTGAAATTTACGAA 58.648 34.615 0.00 0.00 0.00 3.85
314 316 6.073276 CCGGCATATCATCTTGAAATTTACGA 60.073 38.462 0.00 0.00 0.00 3.43
315 317 6.079763 CCGGCATATCATCTTGAAATTTACG 58.920 40.000 0.00 0.00 0.00 3.18
316 318 5.858581 GCCGGCATATCATCTTGAAATTTAC 59.141 40.000 24.80 0.00 0.00 2.01
317 319 5.769662 AGCCGGCATATCATCTTGAAATTTA 59.230 36.000 31.54 0.00 0.00 1.40
318 320 4.586001 AGCCGGCATATCATCTTGAAATTT 59.414 37.500 31.54 0.00 0.00 1.82
319 321 4.147321 AGCCGGCATATCATCTTGAAATT 58.853 39.130 31.54 0.00 0.00 1.82
320 322 3.755378 GAGCCGGCATATCATCTTGAAAT 59.245 43.478 31.54 0.06 0.00 2.17
321 323 3.141398 GAGCCGGCATATCATCTTGAAA 58.859 45.455 31.54 0.00 0.00 2.69
322 324 2.104622 TGAGCCGGCATATCATCTTGAA 59.895 45.455 31.54 0.00 0.00 2.69
323 325 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
324 326 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
325 327 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
326 328 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
327 329 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
328 330 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
329 331 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
330 332 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
331 333 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
332 334 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
333 335 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
334 336 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
335 337 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
336 338 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
337 339 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
338 340 1.135053 GTACCTCCGAAAGACTGAGCC 60.135 57.143 0.00 0.00 0.00 4.70
339 341 1.819903 AGTACCTCCGAAAGACTGAGC 59.180 52.381 0.00 0.00 0.00 4.26
340 342 3.082548 TGAGTACCTCCGAAAGACTGAG 58.917 50.000 0.00 0.00 0.00 3.35
341 343 3.150458 TGAGTACCTCCGAAAGACTGA 57.850 47.619 0.00 0.00 0.00 3.41
342 344 4.882427 TCTATGAGTACCTCCGAAAGACTG 59.118 45.833 0.00 0.00 0.00 3.51
343 345 5.104444 TCTCTATGAGTACCTCCGAAAGACT 60.104 44.000 0.00 0.00 0.00 3.24
344 346 5.124645 TCTCTATGAGTACCTCCGAAAGAC 58.875 45.833 0.00 0.00 0.00 3.01
345 347 5.369409 TCTCTATGAGTACCTCCGAAAGA 57.631 43.478 0.00 0.00 0.00 2.52
346 348 6.373216 CCTATCTCTATGAGTACCTCCGAAAG 59.627 46.154 0.00 0.00 0.00 2.62
347 349 6.239396 CCTATCTCTATGAGTACCTCCGAAA 58.761 44.000 0.00 0.00 0.00 3.46
348 350 5.280573 CCCTATCTCTATGAGTACCTCCGAA 60.281 48.000 0.00 0.00 0.00 4.30
349 351 4.225492 CCCTATCTCTATGAGTACCTCCGA 59.775 50.000 0.00 0.00 0.00 4.55
350 352 4.019141 ACCCTATCTCTATGAGTACCTCCG 60.019 50.000 0.00 0.00 0.00 4.63
351 353 5.222171 ACACCCTATCTCTATGAGTACCTCC 60.222 48.000 0.00 0.00 0.00 4.30
352 354 5.708230 CACACCCTATCTCTATGAGTACCTC 59.292 48.000 0.00 0.00 0.00 3.85
353 355 5.636123 CACACCCTATCTCTATGAGTACCT 58.364 45.833 0.00 0.00 0.00 3.08
354 356 4.218852 GCACACCCTATCTCTATGAGTACC 59.781 50.000 0.00 0.00 0.00 3.34
355 357 4.083217 CGCACACCCTATCTCTATGAGTAC 60.083 50.000 0.00 0.00 0.00 2.73
356 358 4.072839 CGCACACCCTATCTCTATGAGTA 58.927 47.826 0.00 0.00 0.00 2.59
357 359 2.887783 CGCACACCCTATCTCTATGAGT 59.112 50.000 0.00 0.00 0.00 3.41
358 360 2.887783 ACGCACACCCTATCTCTATGAG 59.112 50.000 0.00 0.00 0.00 2.90
359 361 2.623416 CACGCACACCCTATCTCTATGA 59.377 50.000 0.00 0.00 0.00 2.15
360 362 2.362397 ACACGCACACCCTATCTCTATG 59.638 50.000 0.00 0.00 0.00 2.23
361 363 2.362397 CACACGCACACCCTATCTCTAT 59.638 50.000 0.00 0.00 0.00 1.98
362 364 1.749063 CACACGCACACCCTATCTCTA 59.251 52.381 0.00 0.00 0.00 2.43
363 365 0.532573 CACACGCACACCCTATCTCT 59.467 55.000 0.00 0.00 0.00 3.10
364 366 0.246635 ACACACGCACACCCTATCTC 59.753 55.000 0.00 0.00 0.00 2.75
365 367 0.037326 CACACACGCACACCCTATCT 60.037 55.000 0.00 0.00 0.00 1.98
366 368 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
367 369 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
368 370 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
371 373 2.037913 TAAACGCACACACGCACACC 62.038 55.000 0.00 0.00 36.19 4.16
372 374 0.041663 ATAAACGCACACACGCACAC 60.042 50.000 0.00 0.00 36.19 3.82
373 375 1.457683 CTATAAACGCACACACGCACA 59.542 47.619 0.00 0.00 36.19 4.57
374 376 1.201877 CCTATAAACGCACACACGCAC 60.202 52.381 0.00 0.00 36.19 5.34
375 377 1.072391 CCTATAAACGCACACACGCA 58.928 50.000 0.00 0.00 36.19 5.24
376 378 1.323534 CTCCTATAAACGCACACACGC 59.676 52.381 0.00 0.00 36.19 5.34
377 379 2.344441 CACTCCTATAAACGCACACACG 59.656 50.000 0.00 0.00 39.50 4.49
378 380 3.581755 TCACTCCTATAAACGCACACAC 58.418 45.455 0.00 0.00 0.00 3.82
379 381 3.257375 ACTCACTCCTATAAACGCACACA 59.743 43.478 0.00 0.00 0.00 3.72
380 382 3.612860 CACTCACTCCTATAAACGCACAC 59.387 47.826 0.00 0.00 0.00 3.82
381 383 3.257375 ACACTCACTCCTATAAACGCACA 59.743 43.478 0.00 0.00 0.00 4.57
382 384 3.846360 ACACTCACTCCTATAAACGCAC 58.154 45.455 0.00 0.00 0.00 5.34
383 385 5.588240 CATACACTCACTCCTATAAACGCA 58.412 41.667 0.00 0.00 0.00 5.24
384 386 4.444720 GCATACACTCACTCCTATAAACGC 59.555 45.833 0.00 0.00 0.00 4.84
385 387 4.675565 CGCATACACTCACTCCTATAAACG 59.324 45.833 0.00 0.00 0.00 3.60
386 388 4.444720 GCGCATACACTCACTCCTATAAAC 59.555 45.833 0.30 0.00 0.00 2.01
387 389 4.617959 GCGCATACACTCACTCCTATAAA 58.382 43.478 0.30 0.00 0.00 1.40
388 390 3.304458 CGCGCATACACTCACTCCTATAA 60.304 47.826 8.75 0.00 0.00 0.98
389 391 2.225727 CGCGCATACACTCACTCCTATA 59.774 50.000 8.75 0.00 0.00 1.31
390 392 1.001268 CGCGCATACACTCACTCCTAT 60.001 52.381 8.75 0.00 0.00 2.57
391 393 0.380733 CGCGCATACACTCACTCCTA 59.619 55.000 8.75 0.00 0.00 2.94
392 394 1.139734 CGCGCATACACTCACTCCT 59.860 57.895 8.75 0.00 0.00 3.69
393 395 1.153823 ACGCGCATACACTCACTCC 60.154 57.895 5.73 0.00 0.00 3.85
394 396 0.732880 ACACGCGCATACACTCACTC 60.733 55.000 5.73 0.00 0.00 3.51
395 397 0.524414 TACACGCGCATACACTCACT 59.476 50.000 5.73 0.00 0.00 3.41
396 398 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
397 399 3.636282 ATATACACGCGCATACACTCA 57.364 42.857 5.73 0.00 0.00 3.41
398 400 4.030306 GCTTATATACACGCGCATACACTC 59.970 45.833 5.73 0.00 0.00 3.51
399 401 3.918591 GCTTATATACACGCGCATACACT 59.081 43.478 5.73 0.00 0.00 3.55
400 402 3.241239 CGCTTATATACACGCGCATACAC 60.241 47.826 5.73 0.00 39.11 2.90
401 403 2.912345 CGCTTATATACACGCGCATACA 59.088 45.455 5.73 0.00 39.11 2.29
402 404 3.532213 CGCTTATATACACGCGCATAC 57.468 47.619 5.73 0.00 39.11 2.39
409 411 1.784856 ACGCAAGCGCTTATATACACG 59.215 47.619 24.55 18.34 44.19 4.49
410 412 3.050619 AGACGCAAGCGCTTATATACAC 58.949 45.455 24.55 10.53 44.19 2.90
411 413 3.364889 AGACGCAAGCGCTTATATACA 57.635 42.857 24.55 0.00 44.19 2.29
412 414 6.194876 CAGTATAGACGCAAGCGCTTATATAC 59.805 42.308 24.55 24.03 42.73 1.47
413 415 6.128090 ACAGTATAGACGCAAGCGCTTATATA 60.128 38.462 24.55 15.86 44.19 0.86
414 416 5.096169 CAGTATAGACGCAAGCGCTTATAT 58.904 41.667 24.55 16.77 44.19 0.86
415 417 4.023450 ACAGTATAGACGCAAGCGCTTATA 60.023 41.667 24.55 12.98 44.19 0.98
416 418 3.243434 ACAGTATAGACGCAAGCGCTTAT 60.243 43.478 24.55 14.07 44.19 1.73
417 419 2.098607 ACAGTATAGACGCAAGCGCTTA 59.901 45.455 24.55 6.39 44.19 3.09
418 420 1.135083 ACAGTATAGACGCAAGCGCTT 60.135 47.619 18.98 18.98 44.19 4.68
419 421 0.456221 ACAGTATAGACGCAAGCGCT 59.544 50.000 15.09 2.64 44.19 5.92
420 422 0.572590 CACAGTATAGACGCAAGCGC 59.427 55.000 15.09 0.00 44.19 5.92
421 423 1.909376 ACACAGTATAGACGCAAGCG 58.091 50.000 13.50 13.50 46.03 4.68
422 424 5.773239 TTTAACACAGTATAGACGCAAGC 57.227 39.130 0.00 0.00 45.62 4.01
469 471 9.063615 TCATCATATACTAGTACTCGCAAAGAA 57.936 33.333 4.31 0.00 0.00 2.52
470 472 8.617290 TCATCATATACTAGTACTCGCAAAGA 57.383 34.615 4.31 0.00 0.00 2.52
471 473 9.678941 TTTCATCATATACTAGTACTCGCAAAG 57.321 33.333 4.31 0.00 0.00 2.77
473 475 9.459640 GTTTTCATCATATACTAGTACTCGCAA 57.540 33.333 4.31 0.00 0.00 4.85
475 477 8.298140 AGGTTTTCATCATATACTAGTACTCGC 58.702 37.037 4.31 0.00 0.00 5.03
477 479 9.413048 GCAGGTTTTCATCATATACTAGTACTC 57.587 37.037 4.31 0.00 0.00 2.59
478 480 8.924303 TGCAGGTTTTCATCATATACTAGTACT 58.076 33.333 4.31 0.00 0.00 2.73
567 586 4.149571 GCGCTGACTCACACTATCATATTG 59.850 45.833 0.00 0.00 0.00 1.90
656 675 0.600057 CTCCTTTTGGTGCTGCTTCC 59.400 55.000 0.00 4.36 41.38 3.46
683 702 6.486657 CGGGATATTTTCCTATTTCTGCTTCA 59.513 38.462 0.00 0.00 44.75 3.02
687 706 7.454260 AATCGGGATATTTTCCTATTTCTGC 57.546 36.000 0.00 0.00 44.75 4.26
729 748 1.783071 GGGGGTTAGAGAGTGAGAGG 58.217 60.000 0.00 0.00 0.00 3.69
887 911 6.560253 TTAATTTGAGTTGAGTTGGAGCTC 57.440 37.500 4.71 4.71 36.12 4.09
898 922 5.883661 ACCATCTGCGATTAATTTGAGTTG 58.116 37.500 0.00 0.00 0.00 3.16
1111 1144 2.359967 CCCCCTCTTCCACCTCGAC 61.360 68.421 0.00 0.00 0.00 4.20
1118 1151 2.041265 GCTCCTCCCCCTCTTCCA 59.959 66.667 0.00 0.00 0.00 3.53
1127 1160 1.621672 CCTGAACTCTGGCTCCTCCC 61.622 65.000 0.00 0.00 0.00 4.30
1551 1593 2.994995 TCGTCGCCCTGTCCATGT 60.995 61.111 0.00 0.00 0.00 3.21
1552 1594 2.202797 CTCGTCGCCCTGTCCATG 60.203 66.667 0.00 0.00 0.00 3.66
1553 1595 3.461773 CCTCGTCGCCCTGTCCAT 61.462 66.667 0.00 0.00 0.00 3.41
1554 1596 4.988716 ACCTCGTCGCCCTGTCCA 62.989 66.667 0.00 0.00 0.00 4.02
1746 1791 1.600058 TGATGGAGAAGATTGGGGCT 58.400 50.000 0.00 0.00 0.00 5.19
1749 1794 5.382616 TGATCATTGATGGAGAAGATTGGG 58.617 41.667 3.32 0.00 0.00 4.12
1767 1812 1.423161 TGGTGTGGTGTGGATTGATCA 59.577 47.619 0.00 0.00 0.00 2.92
1793 1838 2.034170 GCGATCAGAATTCGTTCAGAGC 60.034 50.000 0.00 0.00 38.81 4.09
1801 1846 2.282555 ACATTCACGCGATCAGAATTCG 59.717 45.455 15.93 8.30 39.55 3.34
1814 1859 1.194547 CACGGGAGTTTCACATTCACG 59.805 52.381 0.00 0.00 44.67 4.35
2044 2089 1.956869 TGATCAAGGAGGAGGAGCAA 58.043 50.000 0.00 0.00 0.00 3.91
2295 2375 7.875971 ACAAAAACAAAAACAAAATACAGGCA 58.124 26.923 0.00 0.00 0.00 4.75
2332 2420 3.585862 ACACACACACAATATCCTCGAC 58.414 45.455 0.00 0.00 0.00 4.20
2398 2497 1.202915 TGGTGATTCAGAAGGCTTGCA 60.203 47.619 3.46 0.00 0.00 4.08
2425 2524 4.594970 ACACGGGTGAATATTGGAAATCA 58.405 39.130 5.71 0.00 0.00 2.57
2432 2531 6.677781 AATAAGTGACACGGGTGAATATTG 57.322 37.500 0.00 0.00 0.00 1.90
2436 2536 5.067273 TGAAAATAAGTGACACGGGTGAAT 58.933 37.500 0.00 0.00 0.00 2.57
2441 2541 3.074412 AGCTGAAAATAAGTGACACGGG 58.926 45.455 0.00 0.00 0.00 5.28
2454 2554 9.561069 ACAGAGAAAGAACTATTTAGCTGAAAA 57.439 29.630 0.00 0.00 32.25 2.29
2463 2563 4.020128 AGCCGGACAGAGAAAGAACTATTT 60.020 41.667 5.05 0.00 0.00 1.40
2483 2583 5.009610 TGTTGGTGAGACAATAAAAGAAGCC 59.990 40.000 0.00 0.00 32.24 4.35
2484 2584 5.915196 GTGTTGGTGAGACAATAAAAGAAGC 59.085 40.000 0.00 0.00 32.24 3.86
2485 2585 6.263168 AGGTGTTGGTGAGACAATAAAAGAAG 59.737 38.462 0.00 0.00 32.24 2.85
2486 2586 6.126409 AGGTGTTGGTGAGACAATAAAAGAA 58.874 36.000 0.00 0.00 32.24 2.52
2487 2587 5.690865 AGGTGTTGGTGAGACAATAAAAGA 58.309 37.500 0.00 0.00 32.24 2.52
2488 2588 6.183360 ACAAGGTGTTGGTGAGACAATAAAAG 60.183 38.462 0.00 0.00 38.07 2.27
2489 2589 5.654650 ACAAGGTGTTGGTGAGACAATAAAA 59.345 36.000 0.00 0.00 38.07 1.52
2490 2590 5.197451 ACAAGGTGTTGGTGAGACAATAAA 58.803 37.500 0.00 0.00 38.07 1.40
2491 2591 4.787551 ACAAGGTGTTGGTGAGACAATAA 58.212 39.130 0.00 0.00 38.07 1.40
2492 2592 4.385825 GACAAGGTGTTGGTGAGACAATA 58.614 43.478 0.00 0.00 38.07 1.90
2493 2593 3.214328 GACAAGGTGTTGGTGAGACAAT 58.786 45.455 0.00 0.00 38.07 2.71
2494 2594 2.639065 GACAAGGTGTTGGTGAGACAA 58.361 47.619 0.00 0.00 38.07 3.18
2495 2595 1.134220 GGACAAGGTGTTGGTGAGACA 60.134 52.381 0.00 0.00 38.07 3.41
2496 2596 1.594331 GGACAAGGTGTTGGTGAGAC 58.406 55.000 0.00 0.00 38.07 3.36
2497 2597 0.105964 CGGACAAGGTGTTGGTGAGA 59.894 55.000 0.00 0.00 38.07 3.27
2498 2598 0.884704 CCGGACAAGGTGTTGGTGAG 60.885 60.000 0.00 0.00 38.07 3.51
2499 2599 1.147376 CCGGACAAGGTGTTGGTGA 59.853 57.895 0.00 0.00 38.07 4.02
2500 2600 2.551912 GCCGGACAAGGTGTTGGTG 61.552 63.158 5.05 0.00 38.07 4.17
2501 2601 2.203294 GCCGGACAAGGTGTTGGT 60.203 61.111 5.05 0.00 38.07 3.67
2531 2631 5.909610 GTGTTGTTAGTTGAGCATTGAAGAC 59.090 40.000 0.00 0.00 0.00 3.01
2627 2727 4.806330 TGATCGTTTGACTACTCTTCACC 58.194 43.478 0.00 0.00 0.00 4.02
2663 2763 8.874744 AGACAGAAAACTCAGTTTAGTACTTC 57.125 34.615 2.38 0.00 34.43 3.01
2686 2789 1.302366 GTCGCATGCCATCATCAAGA 58.698 50.000 13.15 0.00 0.00 3.02
2708 2811 1.009829 CTGTTCATAGTGAAGCCGGC 58.990 55.000 21.89 21.89 37.00 6.13
2771 2875 1.377463 AGGACTAGCTCGCGACTGT 60.377 57.895 3.71 8.76 0.00 3.55
2809 2913 1.531423 TACGGACTCTCAGCTCGTTT 58.469 50.000 0.00 0.00 35.60 3.60
2816 2920 4.617808 TTTCTCGAATACGGACTCTCAG 57.382 45.455 0.00 0.00 40.21 3.35
2817 2921 5.381174 TTTTTCTCGAATACGGACTCTCA 57.619 39.130 0.00 0.00 40.21 3.27
2838 2942 3.245052 CCCCAGACTCTCACCTCATTTTT 60.245 47.826 0.00 0.00 0.00 1.94
2839 2943 2.307098 CCCCAGACTCTCACCTCATTTT 59.693 50.000 0.00 0.00 0.00 1.82
2840 2944 1.912043 CCCCAGACTCTCACCTCATTT 59.088 52.381 0.00 0.00 0.00 2.32
2841 2945 1.577736 CCCCAGACTCTCACCTCATT 58.422 55.000 0.00 0.00 0.00 2.57
2842 2946 0.326048 CCCCCAGACTCTCACCTCAT 60.326 60.000 0.00 0.00 0.00 2.90
2843 2947 1.079256 CCCCCAGACTCTCACCTCA 59.921 63.158 0.00 0.00 0.00 3.86
2844 2948 0.686112 CTCCCCCAGACTCTCACCTC 60.686 65.000 0.00 0.00 0.00 3.85
2845 2949 1.149782 TCTCCCCCAGACTCTCACCT 61.150 60.000 0.00 0.00 0.00 4.00
2846 2950 0.252284 TTCTCCCCCAGACTCTCACC 60.252 60.000 0.00 0.00 0.00 4.02
2917 3043 8.581578 AGACCAACACATAAAAATAATTTCCGT 58.418 29.630 0.00 0.00 0.00 4.69
2996 3122 5.298527 TCACTGTCAATCGAGGATACGTAAT 59.701 40.000 0.00 0.00 46.39 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.