Multiple sequence alignment - TraesCS2D01G206500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G206500 chr2D 100.000 4008 0 0 1 4008 159848415 159852422 0.000000e+00 7402.0
1 TraesCS2D01G206500 chr2D 92.617 298 18 4 445 738 324863554 324863257 3.700000e-115 425.0
2 TraesCS2D01G206500 chr2D 92.308 286 20 2 445 728 275227692 275227977 4.820000e-109 405.0
3 TraesCS2D01G206500 chr2D 91.958 286 19 3 445 728 543458090 543457807 8.070000e-107 398.0
4 TraesCS2D01G206500 chr2D 91.600 250 19 1 1 248 275227392 275227641 1.070000e-90 344.0
5 TraesCS2D01G206500 chr2D 90.980 255 18 2 1 253 498493301 498493050 4.960000e-89 339.0
6 TraesCS2D01G206500 chr2D 90.234 256 20 4 1 253 543458391 543458138 2.990000e-86 329.0
7 TraesCS2D01G206500 chr2D 90.947 243 19 2 6 245 324863857 324863615 1.390000e-84 324.0
8 TraesCS2D01G206500 chr2D 93.333 75 4 1 3299 3372 159851630 159851704 4.230000e-20 110.0
9 TraesCS2D01G206500 chr2D 93.333 75 4 1 3216 3290 159851713 159851786 4.230000e-20 110.0
10 TraesCS2D01G206500 chr2D 100.000 42 0 0 247 288 38129743 38129702 1.190000e-10 78.7
11 TraesCS2D01G206500 chr2B 91.868 1783 82 25 2252 4008 216940336 216942081 0.000000e+00 2431.0
12 TraesCS2D01G206500 chr2B 94.221 571 16 7 730 1296 216938847 216939404 0.000000e+00 856.0
13 TraesCS2D01G206500 chr2B 92.416 567 30 6 1308 1873 216939607 216940161 0.000000e+00 797.0
14 TraesCS2D01G206500 chr2B 93.182 176 9 1 2034 2206 216940159 216940334 5.140000e-64 255.0
15 TraesCS2D01G206500 chr2A 92.164 1123 51 14 2273 3386 171078079 171079173 0.000000e+00 1552.0
16 TraesCS2D01G206500 chr2A 92.716 810 35 10 3216 4008 171079089 171079891 0.000000e+00 1147.0
17 TraesCS2D01G206500 chr2A 91.763 692 31 10 788 1467 171076845 171077522 0.000000e+00 939.0
18 TraesCS2D01G206500 chr2A 94.780 364 13 4 1515 1873 171077523 171077885 2.700000e-156 562.0
19 TraesCS2D01G206500 chr2A 94.388 196 11 0 2034 2229 171077883 171078078 6.510000e-78 302.0
20 TraesCS2D01G206500 chr2A 92.941 170 12 0 1869 2038 746757156 746756987 8.600000e-62 248.0
21 TraesCS2D01G206500 chr2A 94.318 88 5 0 3299 3386 171079001 171079088 6.990000e-28 135.0
22 TraesCS2D01G206500 chr2A 90.789 76 4 3 3216 3290 171079174 171079247 9.170000e-17 99.0
23 TraesCS2D01G206500 chr5B 93.174 293 19 1 445 736 83611488 83611780 2.860000e-116 429.0
24 TraesCS2D01G206500 chr5B 92.126 254 16 3 1 250 83611198 83611451 4.930000e-94 355.0
25 TraesCS2D01G206500 chr5B 84.615 169 12 5 283 451 527191581 527191735 5.360000e-34 156.0
26 TraesCS2D01G206500 chr1D 94.604 278 14 1 445 722 401566785 401566509 2.860000e-116 429.0
27 TraesCS2D01G206500 chr1D 93.214 280 17 2 445 722 56232379 56232658 1.040000e-110 411.0
28 TraesCS2D01G206500 chr1D 97.619 42 1 0 247 288 49631430 49631389 5.560000e-09 73.1
29 TraesCS2D01G206500 chr1D 97.619 42 1 0 247 288 297322742 297322701 5.560000e-09 73.1
30 TraesCS2D01G206500 chr6D 93.007 286 18 2 445 728 200610708 200610993 2.230000e-112 416.0
31 TraesCS2D01G206500 chr6D 91.620 179 12 3 1859 2035 97856597 97856420 1.110000e-60 244.0
32 TraesCS2D01G206500 chr6D 91.525 177 15 0 1859 2035 392897151 392896975 1.110000e-60 244.0
33 TraesCS2D01G206500 chr6D 95.556 45 2 0 244 288 55668484 55668528 5.560000e-09 73.1
34 TraesCS2D01G206500 chr5D 91.892 296 20 3 445 736 438192802 438192507 1.040000e-110 411.0
35 TraesCS2D01G206500 chr5D 91.797 256 18 3 1 253 256484369 256484114 1.770000e-93 353.0
36 TraesCS2D01G206500 chr5D 91.016 256 20 2 1 253 438193104 438192849 3.840000e-90 342.0
37 TraesCS2D01G206500 chr5D 90.710 183 15 2 1871 2053 274578012 274578192 4.000000e-60 243.0
38 TraesCS2D01G206500 chr5D 97.619 42 1 0 244 285 188385293 188385334 5.560000e-09 73.1
39 TraesCS2D01G206500 chr7D 92.527 281 18 3 445 722 195543792 195543512 2.240000e-107 399.0
40 TraesCS2D01G206500 chr7D 86.538 52 7 0 1680 1731 363558964 363559015 1.560000e-04 58.4
41 TraesCS2D01G206500 chr4B 89.492 295 20 4 1 285 60556185 60555892 2.940000e-96 363.0
42 TraesCS2D01G206500 chr6B 88.194 288 27 4 8 288 437840668 437840955 1.780000e-88 337.0
43 TraesCS2D01G206500 chr6B 76.970 165 30 8 286 447 124551919 124551760 1.980000e-13 87.9
44 TraesCS2D01G206500 chr6B 94.340 53 3 0 392 444 646648813 646648865 9.230000e-12 82.4
45 TraesCS2D01G206500 chr3D 90.763 249 19 3 8 253 116342875 116342628 2.990000e-86 329.0
46 TraesCS2D01G206500 chr3D 91.573 178 13 2 1865 2040 217587732 217587555 1.110000e-60 244.0
47 TraesCS2D01G206500 chr3D 92.398 171 13 0 1868 2038 375697301 375697131 1.110000e-60 244.0
48 TraesCS2D01G206500 chr3D 91.477 176 15 0 1864 2039 4171288 4171113 4.000000e-60 243.0
49 TraesCS2D01G206500 chr3D 81.132 159 30 0 286 444 108008184 108008342 1.170000e-25 128.0
50 TraesCS2D01G206500 chr6A 86.824 296 29 7 1 288 486843652 486843359 5.000000e-84 322.0
51 TraesCS2D01G206500 chr6A 84.956 113 6 7 286 398 2417915 2417814 1.970000e-18 104.0
52 TraesCS2D01G206500 chr3A 91.620 179 13 2 1858 2036 585605627 585605803 3.090000e-61 246.0
53 TraesCS2D01G206500 chr3A 93.082 159 11 0 286 444 33641091 33640933 2.410000e-57 233.0
54 TraesCS2D01G206500 chr3A 92.857 56 3 1 396 450 10989921 10989976 3.320000e-11 80.5
55 TraesCS2D01G206500 chr1B 90.608 181 16 1 1870 2050 628050686 628050865 5.180000e-59 239.0
56 TraesCS2D01G206500 chr7B 94.017 117 7 0 286 402 703292697 703292581 1.140000e-40 178.0
57 TraesCS2D01G206500 chr7B 92.500 40 3 0 1692 1731 323208546 323208585 1.560000e-04 58.4
58 TraesCS2D01G206500 chr1A 86.792 159 10 4 286 444 566063407 566063554 2.480000e-37 167.0
59 TraesCS2D01G206500 chr3B 78.916 166 21 11 286 444 6125682 6125524 2.550000e-17 100.0
60 TraesCS2D01G206500 chr5A 77.215 158 25 4 287 444 551238386 551238240 9.230000e-12 82.4
61 TraesCS2D01G206500 chr5A 80.952 105 18 2 343 446 606399144 606399247 9.230000e-12 82.4
62 TraesCS2D01G206500 chr7A 100.000 41 0 0 248 288 16168176 16168136 4.300000e-10 76.8
63 TraesCS2D01G206500 chr7A 92.500 40 3 0 1692 1731 393766451 393766412 1.560000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G206500 chr2D 159848415 159852422 4007 False 2540.666667 7402 95.555333 1 4008 3 chr2D.!!$F1 4007
1 TraesCS2D01G206500 chr2D 275227392 275227977 585 False 374.500000 405 91.954000 1 728 2 chr2D.!!$F2 727
2 TraesCS2D01G206500 chr2D 324863257 324863857 600 True 374.500000 425 91.782000 6 738 2 chr2D.!!$R3 732
3 TraesCS2D01G206500 chr2D 543457807 543458391 584 True 363.500000 398 91.096000 1 728 2 chr2D.!!$R4 727
4 TraesCS2D01G206500 chr2B 216938847 216942081 3234 False 1084.750000 2431 92.921750 730 4008 4 chr2B.!!$F1 3278
5 TraesCS2D01G206500 chr2A 171076845 171079891 3046 False 676.571429 1552 92.988286 788 4008 7 chr2A.!!$F1 3220
6 TraesCS2D01G206500 chr5B 83611198 83611780 582 False 392.000000 429 92.650000 1 736 2 chr5B.!!$F2 735
7 TraesCS2D01G206500 chr5D 438192507 438193104 597 True 376.500000 411 91.454000 1 736 2 chr5D.!!$R2 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
278 331 0.106819 GGATCTGCTCTGGTTGCCAT 60.107 55.0 0.0 0.0 30.82 4.40 F
308 361 0.107654 GGCGGACACAGGATTTAGCT 60.108 55.0 0.0 0.0 0.00 3.32 F
2233 2502 0.324645 TGTAGACCGTCCCCTTACCC 60.325 60.0 0.0 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 2478 0.033699 AGGGGACGGTCTACACCTAC 60.034 60.0 8.23 0.00 41.17 3.18 R
2249 2518 0.706433 AGGTAAGGGGACGGTCTACA 59.294 55.0 8.23 0.00 0.00 2.74 R
3620 3998 0.104304 CAGGAAGCTATTACGGCCGT 59.896 55.0 36.01 36.01 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.766313 TGAGCAACTACTCGCAACAAT 58.234 42.857 0.00 0.00 39.68 2.71
59 60 7.548967 AGCTTAGTTCAACTCTAGGATACAAC 58.451 38.462 0.00 0.00 41.41 3.32
69 70 5.219343 TCTAGGATACAACATGGCAGATG 57.781 43.478 0.00 0.00 41.41 2.90
70 71 4.901250 TCTAGGATACAACATGGCAGATGA 59.099 41.667 0.00 0.00 41.41 2.92
122 126 1.460273 AATCCGTGGTGTGTTTGCCC 61.460 55.000 0.00 0.00 0.00 5.36
169 173 2.524306 TCGTGGGCAATCTGGAATTTT 58.476 42.857 0.00 0.00 0.00 1.82
277 330 1.300963 GGATCTGCTCTGGTTGCCA 59.699 57.895 0.00 0.00 0.00 4.92
278 331 0.106819 GGATCTGCTCTGGTTGCCAT 60.107 55.000 0.00 0.00 30.82 4.40
279 332 1.022735 GATCTGCTCTGGTTGCCATG 58.977 55.000 0.00 0.00 30.82 3.66
280 333 0.395311 ATCTGCTCTGGTTGCCATGG 60.395 55.000 7.63 7.63 30.82 3.66
281 334 2.677524 TGCTCTGGTTGCCATGGC 60.678 61.111 30.54 30.54 42.35 4.40
298 351 4.263572 CAACCAGGGGCGGACACA 62.264 66.667 0.00 0.00 0.00 3.72
299 352 3.953775 AACCAGGGGCGGACACAG 61.954 66.667 0.00 0.00 0.00 3.66
302 355 3.402681 CAGGGGCGGACACAGGAT 61.403 66.667 0.00 0.00 0.00 3.24
303 356 2.610859 AGGGGCGGACACAGGATT 60.611 61.111 0.00 0.00 0.00 3.01
304 357 2.231380 AGGGGCGGACACAGGATTT 61.231 57.895 0.00 0.00 0.00 2.17
305 358 0.912487 AGGGGCGGACACAGGATTTA 60.912 55.000 0.00 0.00 0.00 1.40
306 359 0.463833 GGGGCGGACACAGGATTTAG 60.464 60.000 0.00 0.00 0.00 1.85
307 360 1.095807 GGGCGGACACAGGATTTAGC 61.096 60.000 0.00 0.00 0.00 3.09
308 361 0.107654 GGCGGACACAGGATTTAGCT 60.108 55.000 0.00 0.00 0.00 3.32
309 362 1.138266 GGCGGACACAGGATTTAGCTA 59.862 52.381 0.00 0.00 0.00 3.32
310 363 2.419574 GGCGGACACAGGATTTAGCTAA 60.420 50.000 0.86 0.86 0.00 3.09
311 364 2.866762 GCGGACACAGGATTTAGCTAAG 59.133 50.000 6.24 0.00 0.00 2.18
312 365 2.866762 CGGACACAGGATTTAGCTAAGC 59.133 50.000 6.24 3.26 0.00 3.09
313 366 3.206964 GGACACAGGATTTAGCTAAGCC 58.793 50.000 15.88 15.88 42.83 4.35
314 367 3.206964 GACACAGGATTTAGCTAAGCCC 58.793 50.000 18.59 16.73 43.56 5.19
315 368 2.092375 ACACAGGATTTAGCTAAGCCCC 60.092 50.000 18.59 14.79 43.56 5.80
316 369 2.092429 CACAGGATTTAGCTAAGCCCCA 60.092 50.000 18.59 1.27 43.56 4.96
317 370 2.173569 ACAGGATTTAGCTAAGCCCCAG 59.826 50.000 18.59 14.07 43.56 4.45
318 371 1.777272 AGGATTTAGCTAAGCCCCAGG 59.223 52.381 18.59 0.00 43.56 4.45
336 389 3.135027 GCCCTAGGCTAGCTACAGT 57.865 57.895 16.26 0.00 46.69 3.55
337 390 2.289592 GCCCTAGGCTAGCTACAGTA 57.710 55.000 16.26 0.00 46.69 2.74
338 391 1.887854 GCCCTAGGCTAGCTACAGTAC 59.112 57.143 16.26 0.00 46.69 2.73
339 392 2.152830 CCCTAGGCTAGCTACAGTACG 58.847 57.143 16.26 0.00 0.00 3.67
340 393 2.486907 CCCTAGGCTAGCTACAGTACGT 60.487 54.545 16.26 0.00 0.00 3.57
341 394 2.548904 CCTAGGCTAGCTACAGTACGTG 59.451 54.545 16.26 0.00 0.00 4.49
342 395 2.125773 AGGCTAGCTACAGTACGTGT 57.874 50.000 15.72 3.91 43.86 4.49
343 396 3.272574 AGGCTAGCTACAGTACGTGTA 57.727 47.619 15.72 5.45 40.94 2.90
344 397 2.941720 AGGCTAGCTACAGTACGTGTAC 59.058 50.000 15.72 1.90 40.94 2.90
345 398 2.679837 GGCTAGCTACAGTACGTGTACA 59.320 50.000 15.72 0.00 40.94 2.90
346 399 3.242673 GGCTAGCTACAGTACGTGTACAG 60.243 52.174 15.72 6.94 40.94 2.74
347 400 3.373439 GCTAGCTACAGTACGTGTACAGT 59.627 47.826 7.70 12.15 40.94 3.55
348 401 4.568359 GCTAGCTACAGTACGTGTACAGTA 59.432 45.833 7.70 12.59 40.94 2.74
349 402 4.935885 AGCTACAGTACGTGTACAGTAC 57.064 45.455 19.52 19.52 43.37 2.73
356 409 4.668576 GTACGTGTACAGTACTGCTACA 57.331 45.455 22.90 23.03 40.75 2.74
357 410 3.826236 ACGTGTACAGTACTGCTACAG 57.174 47.619 25.50 21.86 37.52 2.74
358 411 4.153117 GTACGTGTACAGTACTGCTACAGT 59.847 45.833 25.50 24.33 40.75 3.55
359 412 4.318332 ACGTGTACAGTACTGCTACAGTA 58.682 43.478 25.50 10.25 43.46 2.74
360 413 4.940046 ACGTGTACAGTACTGCTACAGTAT 59.060 41.667 25.50 16.71 46.56 2.12
361 414 5.064452 ACGTGTACAGTACTGCTACAGTATC 59.936 44.000 25.50 17.63 46.56 2.24
362 415 5.503683 CGTGTACAGTACTGCTACAGTATCC 60.504 48.000 25.50 17.40 46.56 2.59
363 416 5.356190 GTGTACAGTACTGCTACAGTATCCA 59.644 44.000 25.50 10.01 46.56 3.41
364 417 6.039493 GTGTACAGTACTGCTACAGTATCCAT 59.961 42.308 25.50 8.21 46.56 3.41
365 418 5.521906 ACAGTACTGCTACAGTATCCATG 57.478 43.478 22.90 9.58 46.56 3.66
366 419 5.201243 ACAGTACTGCTACAGTATCCATGA 58.799 41.667 22.90 0.00 46.56 3.07
367 420 5.835819 ACAGTACTGCTACAGTATCCATGAT 59.164 40.000 22.90 0.00 46.56 2.45
368 421 6.155136 CAGTACTGCTACAGTATCCATGATG 58.845 44.000 10.54 0.00 46.56 3.07
369 422 4.000331 ACTGCTACAGTATCCATGATGC 58.000 45.455 0.00 0.00 43.46 3.91
370 423 3.645212 ACTGCTACAGTATCCATGATGCT 59.355 43.478 0.00 0.00 43.46 3.79
379 432 6.753180 CAGTATCCATGATGCTGTACTTAGT 58.247 40.000 12.32 0.00 44.02 2.24
380 433 6.644181 CAGTATCCATGATGCTGTACTTAGTG 59.356 42.308 12.32 0.00 44.02 2.74
381 434 3.797039 TCCATGATGCTGTACTTAGTGC 58.203 45.455 0.00 0.00 0.00 4.40
382 435 3.197549 TCCATGATGCTGTACTTAGTGCA 59.802 43.478 2.77 2.77 39.83 4.57
383 436 3.558829 CCATGATGCTGTACTTAGTGCAG 59.441 47.826 22.90 22.90 46.29 4.41
384 437 3.961480 TGATGCTGTACTTAGTGCAGT 57.039 42.857 26.28 11.85 45.53 4.40
385 438 4.271696 TGATGCTGTACTTAGTGCAGTT 57.728 40.909 26.28 16.81 45.53 3.16
386 439 4.641396 TGATGCTGTACTTAGTGCAGTTT 58.359 39.130 26.28 16.51 45.53 2.66
387 440 5.063204 TGATGCTGTACTTAGTGCAGTTTT 58.937 37.500 26.28 14.43 45.53 2.43
388 441 4.811555 TGCTGTACTTAGTGCAGTTTTG 57.188 40.909 26.28 7.20 45.53 2.44
389 442 4.196193 TGCTGTACTTAGTGCAGTTTTGT 58.804 39.130 26.28 0.00 45.53 2.83
390 443 4.638421 TGCTGTACTTAGTGCAGTTTTGTT 59.362 37.500 26.28 0.00 45.53 2.83
391 444 5.124776 TGCTGTACTTAGTGCAGTTTTGTTT 59.875 36.000 26.28 0.00 45.53 2.83
392 445 5.681543 GCTGTACTTAGTGCAGTTTTGTTTC 59.318 40.000 26.28 8.13 45.53 2.78
393 446 6.458342 GCTGTACTTAGTGCAGTTTTGTTTCT 60.458 38.462 26.28 0.00 45.53 2.52
394 447 7.385778 TGTACTTAGTGCAGTTTTGTTTCTT 57.614 32.000 0.00 0.00 0.00 2.52
395 448 7.469260 TGTACTTAGTGCAGTTTTGTTTCTTC 58.531 34.615 0.00 0.00 0.00 2.87
396 449 6.509418 ACTTAGTGCAGTTTTGTTTCTTCA 57.491 33.333 0.00 0.00 0.00 3.02
397 450 6.322491 ACTTAGTGCAGTTTTGTTTCTTCAC 58.678 36.000 0.00 0.00 0.00 3.18
398 451 3.758300 AGTGCAGTTTTGTTTCTTCACG 58.242 40.909 0.00 0.00 34.21 4.35
399 452 2.278875 GTGCAGTTTTGTTTCTTCACGC 59.721 45.455 0.00 0.00 0.00 5.34
400 453 1.852280 GCAGTTTTGTTTCTTCACGCC 59.148 47.619 0.00 0.00 0.00 5.68
401 454 2.459934 CAGTTTTGTTTCTTCACGCCC 58.540 47.619 0.00 0.00 0.00 6.13
402 455 2.096248 AGTTTTGTTTCTTCACGCCCA 58.904 42.857 0.00 0.00 0.00 5.36
403 456 2.099098 AGTTTTGTTTCTTCACGCCCAG 59.901 45.455 0.00 0.00 0.00 4.45
404 457 1.028905 TTTGTTTCTTCACGCCCAGG 58.971 50.000 0.00 0.00 0.00 4.45
405 458 0.821711 TTGTTTCTTCACGCCCAGGG 60.822 55.000 0.00 0.00 0.00 4.45
406 459 2.282180 TTTCTTCACGCCCAGGGC 60.282 61.111 22.33 22.33 46.75 5.19
435 488 3.866582 CGGCCTGGGTCCTGGATC 61.867 72.222 15.84 0.00 37.23 3.36
436 489 3.493303 GGCCTGGGTCCTGGATCC 61.493 72.222 19.55 19.55 37.23 3.36
437 490 3.866582 GCCTGGGTCCTGGATCCG 61.867 72.222 20.81 14.77 35.15 4.18
438 491 3.866582 CCTGGGTCCTGGATCCGC 61.867 72.222 20.81 7.87 35.15 5.54
439 492 3.866582 CTGGGTCCTGGATCCGCC 61.867 72.222 20.81 7.01 35.15 6.13
440 493 4.731853 TGGGTCCTGGATCCGCCA 62.732 66.667 20.81 0.56 46.96 5.69
441 494 4.176752 GGGTCCTGGATCCGCCAC 62.177 72.222 10.91 2.70 43.33 5.01
442 495 3.083997 GGTCCTGGATCCGCCACT 61.084 66.667 7.39 0.00 43.33 4.00
443 496 2.187946 GTCCTGGATCCGCCACTG 59.812 66.667 7.39 0.00 43.33 3.66
632 687 4.969196 CGGGCTGTGTCTGCGTGT 62.969 66.667 0.00 0.00 0.00 4.49
728 784 2.480037 ACGTGTGTCAGTTATCGTCGTA 59.520 45.455 0.00 0.00 0.00 3.43
864 921 1.307343 CCACCTGGATCCCTCCACT 60.307 63.158 9.90 0.00 46.95 4.00
1255 1326 6.477253 TGCACTAACTGGTATCCACATTAAA 58.523 36.000 0.00 0.00 0.00 1.52
1266 1337 0.446222 CACATTAAAGTCGGTGGGCG 59.554 55.000 0.00 0.00 0.00 6.13
1267 1338 0.675522 ACATTAAAGTCGGTGGGCGG 60.676 55.000 0.00 0.00 0.00 6.13
1296 1367 5.176223 ACTGATTTGCGCAAAGAAAAGATTG 59.824 36.000 35.62 20.30 33.32 2.67
1297 1368 5.288015 TGATTTGCGCAAAGAAAAGATTGA 58.712 33.333 35.62 12.28 33.32 2.57
1299 1370 7.089538 TGATTTGCGCAAAGAAAAGATTGATA 58.910 30.769 35.62 12.40 33.32 2.15
1301 1372 6.874297 TTGCGCAAAGAAAAGATTGATATG 57.126 33.333 22.78 0.00 0.00 1.78
1302 1373 5.953183 TGCGCAAAGAAAAGATTGATATGT 58.047 33.333 8.16 0.00 0.00 2.29
1304 1375 6.966632 TGCGCAAAGAAAAGATTGATATGTAC 59.033 34.615 8.16 0.00 0.00 2.90
1305 1376 7.148255 TGCGCAAAGAAAAGATTGATATGTACT 60.148 33.333 8.16 0.00 0.00 2.73
1306 1377 7.374491 GCGCAAAGAAAAGATTGATATGTACTC 59.626 37.037 0.30 0.00 0.00 2.59
1321 1583 9.274206 TGATATGTACTCCGTATATATCAGAGC 57.726 37.037 20.17 5.23 45.50 4.09
1325 1587 3.375610 ACTCCGTATATATCAGAGCAGCG 59.624 47.826 0.00 0.00 0.00 5.18
1408 1670 1.576920 CGTATCCTCGAGAGCGCAT 59.423 57.895 15.71 0.00 37.46 4.73
1468 1730 6.146510 TGTCGCGTGATTCCCATAAATATTAC 59.853 38.462 5.77 0.00 0.00 1.89
1470 1732 7.543172 GTCGCGTGATTCCCATAAATATTACTA 59.457 37.037 5.77 0.00 0.00 1.82
1471 1733 7.543172 TCGCGTGATTCCCATAAATATTACTAC 59.457 37.037 5.77 0.00 0.00 2.73
1472 1734 7.544566 CGCGTGATTCCCATAAATATTACTACT 59.455 37.037 0.00 0.00 0.00 2.57
1473 1735 9.865321 GCGTGATTCCCATAAATATTACTACTA 57.135 33.333 0.00 0.00 0.00 1.82
1531 1793 8.699283 AATCACAGTATAACGAGTAAAACCTC 57.301 34.615 0.00 0.00 0.00 3.85
1746 2012 8.256356 TGAATGAGATTTTAAAAGACCCCAAA 57.744 30.769 6.79 0.00 0.00 3.28
1853 2119 2.825532 CAAATTCAGACGGGGAAATGGT 59.174 45.455 0.00 0.00 0.00 3.55
1870 2136 7.049754 GGAAATGGTATCTTGCCAAAAATCAT 58.950 34.615 0.00 0.00 39.72 2.45
1871 2137 8.203485 GGAAATGGTATCTTGCCAAAAATCATA 58.797 33.333 0.00 0.00 39.72 2.15
1872 2138 8.947055 AAATGGTATCTTGCCAAAAATCATAC 57.053 30.769 0.00 0.00 39.72 2.39
1873 2139 7.902920 ATGGTATCTTGCCAAAAATCATACT 57.097 32.000 0.00 0.00 39.72 2.12
1874 2140 7.333528 TGGTATCTTGCCAAAAATCATACTC 57.666 36.000 0.00 0.00 32.29 2.59
1875 2141 6.321181 TGGTATCTTGCCAAAAATCATACTCC 59.679 38.462 0.00 0.00 32.29 3.85
1876 2142 6.547510 GGTATCTTGCCAAAAATCATACTCCT 59.452 38.462 0.00 0.00 0.00 3.69
1877 2143 7.068716 GGTATCTTGCCAAAAATCATACTCCTT 59.931 37.037 0.00 0.00 0.00 3.36
1878 2144 6.515272 TCTTGCCAAAAATCATACTCCTTC 57.485 37.500 0.00 0.00 0.00 3.46
1879 2145 5.418840 TCTTGCCAAAAATCATACTCCTTCC 59.581 40.000 0.00 0.00 0.00 3.46
1880 2146 3.694072 TGCCAAAAATCATACTCCTTCCG 59.306 43.478 0.00 0.00 0.00 4.30
1881 2147 3.694566 GCCAAAAATCATACTCCTTCCGT 59.305 43.478 0.00 0.00 0.00 4.69
1882 2148 4.157840 GCCAAAAATCATACTCCTTCCGTT 59.842 41.667 0.00 0.00 0.00 4.44
1883 2149 5.336451 GCCAAAAATCATACTCCTTCCGTTT 60.336 40.000 0.00 0.00 0.00 3.60
1884 2150 6.322491 CCAAAAATCATACTCCTTCCGTTTC 58.678 40.000 0.00 0.00 0.00 2.78
1885 2151 6.151144 CCAAAAATCATACTCCTTCCGTTTCT 59.849 38.462 0.00 0.00 0.00 2.52
1886 2152 7.335924 CCAAAAATCATACTCCTTCCGTTTCTA 59.664 37.037 0.00 0.00 0.00 2.10
1887 2153 8.726988 CAAAAATCATACTCCTTCCGTTTCTAA 58.273 33.333 0.00 0.00 0.00 2.10
1888 2154 8.857694 AAAATCATACTCCTTCCGTTTCTAAA 57.142 30.769 0.00 0.00 0.00 1.85
1889 2155 9.462606 AAAATCATACTCCTTCCGTTTCTAAAT 57.537 29.630 0.00 0.00 0.00 1.40
1895 2161 9.901172 ATACTCCTTCCGTTTCTAAATATTTGT 57.099 29.630 11.05 0.00 0.00 2.83
1896 2162 8.265165 ACTCCTTCCGTTTCTAAATATTTGTC 57.735 34.615 11.05 0.00 0.00 3.18
1897 2163 8.101419 ACTCCTTCCGTTTCTAAATATTTGTCT 58.899 33.333 11.05 0.00 0.00 3.41
1898 2164 8.857694 TCCTTCCGTTTCTAAATATTTGTCTT 57.142 30.769 11.05 0.00 0.00 3.01
1899 2165 9.292195 TCCTTCCGTTTCTAAATATTTGTCTTT 57.708 29.630 11.05 0.00 0.00 2.52
1900 2166 9.908152 CCTTCCGTTTCTAAATATTTGTCTTTT 57.092 29.630 11.05 0.00 0.00 2.27
1925 2191 9.672086 TTTTAAGATTTCAAATCAACTACCACG 57.328 29.630 12.74 0.00 0.00 4.94
1926 2192 6.877611 AAGATTTCAAATCAACTACCACGT 57.122 33.333 12.74 0.00 0.00 4.49
1927 2193 7.972832 AAGATTTCAAATCAACTACCACGTA 57.027 32.000 12.74 0.00 0.00 3.57
1928 2194 7.360575 AGATTTCAAATCAACTACCACGTAC 57.639 36.000 12.74 0.00 0.00 3.67
1929 2195 7.159372 AGATTTCAAATCAACTACCACGTACT 58.841 34.615 12.74 0.00 0.00 2.73
1930 2196 6.533819 TTTCAAATCAACTACCACGTACTG 57.466 37.500 0.00 0.00 0.00 2.74
1931 2197 5.456548 TCAAATCAACTACCACGTACTGA 57.543 39.130 0.00 0.00 0.00 3.41
1932 2198 6.032956 TCAAATCAACTACCACGTACTGAT 57.967 37.500 0.00 0.00 0.00 2.90
1933 2199 7.160547 TCAAATCAACTACCACGTACTGATA 57.839 36.000 0.00 0.00 0.00 2.15
1934 2200 7.778083 TCAAATCAACTACCACGTACTGATAT 58.222 34.615 0.00 0.00 0.00 1.63
1935 2201 8.905850 TCAAATCAACTACCACGTACTGATATA 58.094 33.333 0.00 0.00 0.00 0.86
1936 2202 9.692749 CAAATCAACTACCACGTACTGATATAT 57.307 33.333 0.00 0.00 0.00 0.86
1975 2241 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1976 2242 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1977 2243 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1978 2244 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1979 2245 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1980 2246 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1981 2247 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
1982 2248 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
1983 2249 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
1984 2250 5.483811 TCACTCATTTTGCTCCGTATGTAA 58.516 37.500 0.00 0.00 0.00 2.41
1985 2251 6.112734 TCACTCATTTTGCTCCGTATGTAAT 58.887 36.000 0.00 0.00 0.00 1.89
1986 2252 6.257849 TCACTCATTTTGCTCCGTATGTAATC 59.742 38.462 0.00 0.00 0.00 1.75
1987 2253 6.037062 CACTCATTTTGCTCCGTATGTAATCA 59.963 38.462 0.00 0.00 0.00 2.57
1988 2254 6.037172 ACTCATTTTGCTCCGTATGTAATCAC 59.963 38.462 0.00 0.00 0.00 3.06
1989 2255 6.112734 TCATTTTGCTCCGTATGTAATCACT 58.887 36.000 0.00 0.00 0.00 3.41
1990 2256 6.597672 TCATTTTGCTCCGTATGTAATCACTT 59.402 34.615 0.00 0.00 0.00 3.16
1991 2257 5.794687 TTTGCTCCGTATGTAATCACTTG 57.205 39.130 0.00 0.00 0.00 3.16
1992 2258 4.465632 TGCTCCGTATGTAATCACTTGT 57.534 40.909 0.00 0.00 0.00 3.16
1993 2259 4.827692 TGCTCCGTATGTAATCACTTGTT 58.172 39.130 0.00 0.00 0.00 2.83
1994 2260 4.629634 TGCTCCGTATGTAATCACTTGTTG 59.370 41.667 0.00 0.00 0.00 3.33
1995 2261 4.868171 GCTCCGTATGTAATCACTTGTTGA 59.132 41.667 0.00 0.00 39.11 3.18
1996 2262 5.350365 GCTCCGTATGTAATCACTTGTTGAA 59.650 40.000 0.00 0.00 37.92 2.69
1997 2263 6.128391 GCTCCGTATGTAATCACTTGTTGAAA 60.128 38.462 0.00 0.00 37.92 2.69
1998 2264 7.414098 GCTCCGTATGTAATCACTTGTTGAAAT 60.414 37.037 0.00 0.00 37.92 2.17
1999 2265 7.970384 TCCGTATGTAATCACTTGTTGAAATC 58.030 34.615 0.00 0.00 37.92 2.17
2000 2266 7.822334 TCCGTATGTAATCACTTGTTGAAATCT 59.178 33.333 0.00 0.00 37.92 2.40
2001 2267 8.116753 CCGTATGTAATCACTTGTTGAAATCTC 58.883 37.037 0.00 0.00 37.92 2.75
2002 2268 8.873830 CGTATGTAATCACTTGTTGAAATCTCT 58.126 33.333 0.00 0.00 37.92 3.10
2006 2272 9.996554 TGTAATCACTTGTTGAAATCTCTAGAA 57.003 29.630 0.00 0.00 37.92 2.10
2009 2275 9.784531 AATCACTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 37.92 2.52
2010 2276 8.594881 TCACTTGTTGAAATCTCTAGAAAGAC 57.405 34.615 0.00 0.00 0.00 3.01
2011 2277 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2012 2278 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2013 2279 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2029 2295 9.413734 AGAAAGACAAATATTTAGGAATGGAGG 57.586 33.333 0.00 0.00 0.00 4.30
2030 2296 8.539117 AAAGACAAATATTTAGGAATGGAGGG 57.461 34.615 0.00 0.00 0.00 4.30
2031 2297 7.465900 AGACAAATATTTAGGAATGGAGGGA 57.534 36.000 0.00 0.00 0.00 4.20
2032 2298 7.290813 AGACAAATATTTAGGAATGGAGGGAC 58.709 38.462 0.00 0.00 0.00 4.46
2057 2323 8.543774 ACTACAAGAGTGAGAAACAATCCATAT 58.456 33.333 0.00 0.00 43.50 1.78
2209 2478 0.667993 TCTTTTCAAACCAGGCAGCG 59.332 50.000 0.00 0.00 0.00 5.18
2229 2498 4.125239 GGTGTAGACCGTCCCCTT 57.875 61.111 0.00 0.00 30.61 3.95
2230 2499 3.288099 GGTGTAGACCGTCCCCTTA 57.712 57.895 0.00 0.00 30.61 2.69
2231 2500 0.820226 GGTGTAGACCGTCCCCTTAC 59.180 60.000 0.00 0.00 30.61 2.34
2232 2501 0.820226 GTGTAGACCGTCCCCTTACC 59.180 60.000 0.00 0.00 0.00 2.85
2233 2502 0.324645 TGTAGACCGTCCCCTTACCC 60.325 60.000 0.00 0.00 0.00 3.69
2234 2503 1.045350 GTAGACCGTCCCCTTACCCC 61.045 65.000 0.00 0.00 0.00 4.95
2235 2504 1.224003 TAGACCGTCCCCTTACCCCT 61.224 60.000 0.00 0.00 0.00 4.79
2236 2505 2.040114 ACCGTCCCCTTACCCCTC 59.960 66.667 0.00 0.00 0.00 4.30
2237 2506 2.039951 CCGTCCCCTTACCCCTCA 59.960 66.667 0.00 0.00 0.00 3.86
2238 2507 1.614226 CCGTCCCCTTACCCCTCAA 60.614 63.158 0.00 0.00 0.00 3.02
2239 2508 1.202769 CCGTCCCCTTACCCCTCAAA 61.203 60.000 0.00 0.00 0.00 2.69
2240 2509 0.694196 CGTCCCCTTACCCCTCAAAA 59.306 55.000 0.00 0.00 0.00 2.44
2241 2510 1.074244 CGTCCCCTTACCCCTCAAAAA 59.926 52.381 0.00 0.00 0.00 1.94
2292 2561 2.920647 GCCGTGGTTTGTTTCACTATGC 60.921 50.000 0.00 0.00 0.00 3.14
2296 2567 4.394920 CGTGGTTTGTTTCACTATGCCTAT 59.605 41.667 0.00 0.00 0.00 2.57
2297 2568 5.106317 CGTGGTTTGTTTCACTATGCCTATT 60.106 40.000 0.00 0.00 0.00 1.73
2298 2569 6.092748 GTGGTTTGTTTCACTATGCCTATTG 58.907 40.000 0.00 0.00 0.00 1.90
2299 2570 6.007076 TGGTTTGTTTCACTATGCCTATTGA 58.993 36.000 0.00 0.00 0.00 2.57
2413 2684 9.243637 GTTCTCTATCAGTTGTATGAGATGAAC 57.756 37.037 0.00 0.00 32.31 3.18
2502 2773 1.806542 CCCTGTTGGACAGTTCGAATG 59.193 52.381 0.00 3.61 44.50 2.67
2661 2934 8.710835 AAAAGAAAAACGAGGAAATAAAGCAA 57.289 26.923 0.00 0.00 0.00 3.91
2665 2938 4.782019 AACGAGGAAATAAAGCAATGCA 57.218 36.364 8.35 0.00 0.00 3.96
2666 2939 4.782019 ACGAGGAAATAAAGCAATGCAA 57.218 36.364 8.35 0.00 0.00 4.08
2718 2992 2.559381 ATACCAGGAGAGGCAAGACT 57.441 50.000 0.00 0.00 0.00 3.24
2759 3033 0.526954 CGCGCCTTCACTTATACGGT 60.527 55.000 0.00 0.00 0.00 4.83
2768 3042 6.518537 GCCTTCACTTATACGGTAGATGGATT 60.519 42.308 9.21 0.00 0.00 3.01
2791 3065 8.682936 ATTAAGGTAAATAATGCAGACAGAGG 57.317 34.615 0.00 0.00 0.00 3.69
2917 3195 5.475719 ACGAAAATGTACGAGAGGATTTCA 58.524 37.500 0.00 0.00 0.00 2.69
2927 3205 4.938226 ACGAGAGGATTTCAAATGAGAACC 59.062 41.667 0.00 0.00 0.00 3.62
3057 3335 3.542704 GCTTCACTCGACAATGTACTACG 59.457 47.826 0.00 0.00 0.00 3.51
3063 3341 1.730121 CGACAATGTACTACGCGTGGT 60.730 52.381 30.84 30.84 0.00 4.16
3077 3355 0.179073 CGTGGTAGAATCCCTGCAGG 60.179 60.000 26.87 26.87 0.00 4.85
3088 3366 1.064017 TCCCTGCAGGTTTTGAGTGTT 60.064 47.619 30.63 0.00 36.75 3.32
3337 3707 7.500691 CGTGTGATAATTTTGTTTGTTCATGG 58.499 34.615 0.00 0.00 0.00 3.66
3396 3766 2.009774 CTGAGCATTCGGGTTTACTGG 58.990 52.381 0.00 0.00 0.00 4.00
3574 3952 4.615901 CGAAGCCTGCCACATACA 57.384 55.556 0.00 0.00 0.00 2.29
3575 3953 2.089854 CGAAGCCTGCCACATACAC 58.910 57.895 0.00 0.00 0.00 2.90
3578 3956 2.483714 CGAAGCCTGCCACATACACTAT 60.484 50.000 0.00 0.00 0.00 2.12
3579 3957 3.243737 CGAAGCCTGCCACATACACTATA 60.244 47.826 0.00 0.00 0.00 1.31
3582 3960 5.407407 AGCCTGCCACATACACTATATAC 57.593 43.478 0.00 0.00 0.00 1.47
3583 3961 5.087323 AGCCTGCCACATACACTATATACT 58.913 41.667 0.00 0.00 0.00 2.12
3620 3998 2.429971 TGTTGCAATCTGCTGAACCAAA 59.570 40.909 0.59 0.00 45.31 3.28
3845 4225 2.420022 CCAATGTTAGAGCTCCAAACCG 59.580 50.000 20.88 12.41 0.00 4.44
3917 4297 1.359848 GCAGTATGACAACCCGAGTG 58.640 55.000 0.00 0.00 39.69 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.232756 TTGTTGCGAGTAGTTGCTCA 57.767 45.000 11.15 7.55 35.33 4.26
23 24 2.708861 TGAACTAAGCTTCTGGGTTGGA 59.291 45.455 0.00 0.00 37.35 3.53
59 60 2.288729 CCAACATACGTCATCTGCCATG 59.711 50.000 0.00 0.00 0.00 3.66
69 70 1.199097 CTTTGCCCACCAACATACGTC 59.801 52.381 0.00 0.00 31.97 4.34
70 71 1.243902 CTTTGCCCACCAACATACGT 58.756 50.000 0.00 0.00 31.97 3.57
122 126 2.478709 GCGACTAGATCCACACTGTCAG 60.479 54.545 0.00 0.00 0.00 3.51
169 173 5.932303 CGTCCTTCTTCTGTCCAGAAAATTA 59.068 40.000 10.68 0.00 45.75 1.40
246 299 3.315140 GATCCCTAGCGCCTCCCC 61.315 72.222 2.29 0.00 0.00 4.81
281 334 4.263572 TGTGTCCGCCCCTGGTTG 62.264 66.667 0.00 0.00 0.00 3.77
282 335 3.953775 CTGTGTCCGCCCCTGGTT 61.954 66.667 0.00 0.00 0.00 3.67
285 338 2.484287 AAATCCTGTGTCCGCCCCTG 62.484 60.000 0.00 0.00 0.00 4.45
286 339 0.912487 TAAATCCTGTGTCCGCCCCT 60.912 55.000 0.00 0.00 0.00 4.79
287 340 0.463833 CTAAATCCTGTGTCCGCCCC 60.464 60.000 0.00 0.00 0.00 5.80
288 341 1.095807 GCTAAATCCTGTGTCCGCCC 61.096 60.000 0.00 0.00 0.00 6.13
289 342 0.107654 AGCTAAATCCTGTGTCCGCC 60.108 55.000 0.00 0.00 0.00 6.13
290 343 2.596904 TAGCTAAATCCTGTGTCCGC 57.403 50.000 0.00 0.00 0.00 5.54
291 344 2.866762 GCTTAGCTAAATCCTGTGTCCG 59.133 50.000 7.74 0.00 0.00 4.79
292 345 3.206964 GGCTTAGCTAAATCCTGTGTCC 58.793 50.000 7.74 0.00 0.00 4.02
293 346 3.206964 GGGCTTAGCTAAATCCTGTGTC 58.793 50.000 18.54 4.16 0.00 3.67
294 347 2.092375 GGGGCTTAGCTAAATCCTGTGT 60.092 50.000 18.54 0.00 0.00 3.72
295 348 2.092429 TGGGGCTTAGCTAAATCCTGTG 60.092 50.000 18.54 3.99 0.00 3.66
296 349 2.173569 CTGGGGCTTAGCTAAATCCTGT 59.826 50.000 18.54 0.00 0.00 4.00
297 350 2.487986 CCTGGGGCTTAGCTAAATCCTG 60.488 54.545 18.54 16.19 0.00 3.86
298 351 1.777272 CCTGGGGCTTAGCTAAATCCT 59.223 52.381 18.54 0.00 0.00 3.24
299 352 1.819697 GCCTGGGGCTTAGCTAAATCC 60.820 57.143 7.74 11.15 46.69 3.01
300 353 1.610363 GCCTGGGGCTTAGCTAAATC 58.390 55.000 7.74 2.44 46.69 2.17
301 354 3.829577 GCCTGGGGCTTAGCTAAAT 57.170 52.632 7.74 0.00 46.69 1.40
319 372 2.152830 CGTACTGTAGCTAGCCTAGGG 58.847 57.143 12.13 0.88 0.00 3.53
320 373 2.548904 CACGTACTGTAGCTAGCCTAGG 59.451 54.545 12.13 3.67 0.00 3.02
321 374 3.204526 ACACGTACTGTAGCTAGCCTAG 58.795 50.000 12.13 9.90 0.00 3.02
322 375 3.272574 ACACGTACTGTAGCTAGCCTA 57.727 47.619 12.13 0.13 0.00 3.93
323 376 2.125773 ACACGTACTGTAGCTAGCCT 57.874 50.000 12.13 1.20 0.00 4.58
324 377 2.679837 TGTACACGTACTGTAGCTAGCC 59.320 50.000 12.13 0.00 35.93 3.93
325 378 3.373439 ACTGTACACGTACTGTAGCTAGC 59.627 47.826 15.62 6.62 43.35 3.42
326 379 5.809562 AGTACTGTACACGTACTGTAGCTAG 59.190 44.000 24.80 7.04 44.98 3.42
327 380 5.724328 AGTACTGTACACGTACTGTAGCTA 58.276 41.667 24.80 0.00 44.98 3.32
328 381 4.573900 AGTACTGTACACGTACTGTAGCT 58.426 43.478 24.80 17.68 44.98 3.32
329 382 4.935885 AGTACTGTACACGTACTGTAGC 57.064 45.455 24.80 16.39 44.98 3.58
334 387 4.318332 TGTAGCAGTACTGTACACGTACT 58.682 43.478 23.44 22.10 46.15 2.73
335 388 4.153117 ACTGTAGCAGTACTGTACACGTAC 59.847 45.833 23.44 19.52 43.46 3.67
336 389 4.318332 ACTGTAGCAGTACTGTACACGTA 58.682 43.478 23.44 8.36 43.46 3.57
337 390 3.144506 ACTGTAGCAGTACTGTACACGT 58.855 45.455 23.44 20.94 43.46 4.49
338 391 3.826236 ACTGTAGCAGTACTGTACACG 57.174 47.619 23.44 20.48 43.46 4.49
348 401 6.915737 ACAGCATCATGGATACTGTAGCAGT 61.916 44.000 9.72 6.99 42.67 4.40
349 402 3.995048 CAGCATCATGGATACTGTAGCAG 59.005 47.826 5.36 0.00 31.02 4.24
350 403 3.389002 ACAGCATCATGGATACTGTAGCA 59.611 43.478 9.72 0.00 42.67 3.49
351 404 4.000331 ACAGCATCATGGATACTGTAGC 58.000 45.455 9.72 0.00 42.67 3.58
352 405 6.338214 AGTACAGCATCATGGATACTGTAG 57.662 41.667 15.95 0.00 44.51 2.74
353 406 6.731292 AAGTACAGCATCATGGATACTGTA 57.269 37.500 12.89 12.89 42.67 2.74
354 407 5.620738 AAGTACAGCATCATGGATACTGT 57.379 39.130 14.54 14.54 45.29 3.55
355 408 6.644181 CACTAAGTACAGCATCATGGATACTG 59.356 42.308 5.18 5.18 38.85 2.74
356 409 6.739843 GCACTAAGTACAGCATCATGGATACT 60.740 42.308 0.00 0.00 37.61 2.12
357 410 5.406780 GCACTAAGTACAGCATCATGGATAC 59.593 44.000 0.00 0.00 0.00 2.24
358 411 5.070313 TGCACTAAGTACAGCATCATGGATA 59.930 40.000 0.00 0.00 31.05 2.59
359 412 4.141642 TGCACTAAGTACAGCATCATGGAT 60.142 41.667 0.00 0.00 31.05 3.41
360 413 3.197549 TGCACTAAGTACAGCATCATGGA 59.802 43.478 0.00 0.00 31.05 3.41
361 414 3.534554 TGCACTAAGTACAGCATCATGG 58.465 45.455 0.00 0.00 31.05 3.66
362 415 4.186926 ACTGCACTAAGTACAGCATCATG 58.813 43.478 0.00 0.00 36.28 3.07
363 416 4.478206 ACTGCACTAAGTACAGCATCAT 57.522 40.909 0.00 0.00 36.28 2.45
364 417 3.961480 ACTGCACTAAGTACAGCATCA 57.039 42.857 0.00 0.00 36.28 3.07
365 418 5.049405 ACAAAACTGCACTAAGTACAGCATC 60.049 40.000 0.00 0.00 36.28 3.91
366 419 4.821805 ACAAAACTGCACTAAGTACAGCAT 59.178 37.500 0.00 0.00 36.28 3.79
367 420 4.196193 ACAAAACTGCACTAAGTACAGCA 58.804 39.130 0.00 0.00 30.67 4.41
368 421 4.813296 ACAAAACTGCACTAAGTACAGC 57.187 40.909 0.00 0.00 30.67 4.40
369 422 7.016361 AGAAACAAAACTGCACTAAGTACAG 57.984 36.000 0.00 0.00 33.54 2.74
370 423 6.995511 AGAAACAAAACTGCACTAAGTACA 57.004 33.333 0.00 0.00 0.00 2.90
371 424 7.428472 GTGAAGAAACAAAACTGCACTAAGTAC 59.572 37.037 0.00 0.00 39.01 2.73
372 425 7.469260 GTGAAGAAACAAAACTGCACTAAGTA 58.531 34.615 0.00 0.00 39.01 2.24
373 426 6.322491 GTGAAGAAACAAAACTGCACTAAGT 58.678 36.000 0.00 0.00 39.01 2.24
374 427 5.452302 CGTGAAGAAACAAAACTGCACTAAG 59.548 40.000 0.00 0.00 39.69 2.18
375 428 5.328691 CGTGAAGAAACAAAACTGCACTAA 58.671 37.500 0.00 0.00 39.69 2.24
376 429 4.729458 GCGTGAAGAAACAAAACTGCACTA 60.729 41.667 0.00 0.00 39.69 2.74
377 430 3.758300 CGTGAAGAAACAAAACTGCACT 58.242 40.909 0.00 0.00 39.69 4.40
378 431 2.278875 GCGTGAAGAAACAAAACTGCAC 59.721 45.455 0.00 0.00 38.79 4.57
379 432 2.525055 GCGTGAAGAAACAAAACTGCA 58.475 42.857 0.00 0.00 0.00 4.41
380 433 1.852280 GGCGTGAAGAAACAAAACTGC 59.148 47.619 0.00 0.00 0.00 4.40
381 434 2.159310 TGGGCGTGAAGAAACAAAACTG 60.159 45.455 0.00 0.00 0.00 3.16
382 435 2.096248 TGGGCGTGAAGAAACAAAACT 58.904 42.857 0.00 0.00 0.00 2.66
383 436 2.459934 CTGGGCGTGAAGAAACAAAAC 58.540 47.619 0.00 0.00 0.00 2.43
384 437 1.407258 CCTGGGCGTGAAGAAACAAAA 59.593 47.619 0.00 0.00 0.00 2.44
385 438 1.028905 CCTGGGCGTGAAGAAACAAA 58.971 50.000 0.00 0.00 0.00 2.83
386 439 0.821711 CCCTGGGCGTGAAGAAACAA 60.822 55.000 0.00 0.00 0.00 2.83
387 440 1.228124 CCCTGGGCGTGAAGAAACA 60.228 57.895 0.00 0.00 0.00 2.83
388 441 2.626780 GCCCTGGGCGTGAAGAAAC 61.627 63.158 24.16 0.00 39.62 2.78
389 442 2.282180 GCCCTGGGCGTGAAGAAA 60.282 61.111 24.16 0.00 39.62 2.52
418 471 3.866582 GATCCAGGACCCAGGCCG 61.867 72.222 0.00 0.00 0.00 6.13
419 472 3.493303 GGATCCAGGACCCAGGCC 61.493 72.222 6.95 0.00 0.00 5.19
420 473 3.866582 CGGATCCAGGACCCAGGC 61.867 72.222 13.41 0.00 0.00 4.85
421 474 3.866582 GCGGATCCAGGACCCAGG 61.867 72.222 13.41 0.00 0.00 4.45
422 475 3.866582 GGCGGATCCAGGACCCAG 61.867 72.222 13.41 0.00 34.01 4.45
423 476 4.731853 TGGCGGATCCAGGACCCA 62.732 66.667 13.41 6.76 40.72 4.51
430 483 2.910360 CCATCAGTGGCGGATCCA 59.090 61.111 13.41 0.00 44.18 3.41
439 492 3.196469 TCCTTCTCTAGTTGCCATCAGTG 59.804 47.826 0.00 0.00 0.00 3.66
440 493 3.445008 TCCTTCTCTAGTTGCCATCAGT 58.555 45.455 0.00 0.00 0.00 3.41
441 494 4.161189 TCTTCCTTCTCTAGTTGCCATCAG 59.839 45.833 0.00 0.00 0.00 2.90
442 495 4.081420 GTCTTCCTTCTCTAGTTGCCATCA 60.081 45.833 0.00 0.00 0.00 3.07
443 496 4.438148 GTCTTCCTTCTCTAGTTGCCATC 58.562 47.826 0.00 0.00 0.00 3.51
511 565 1.073199 CTGCCTTCGAACCCCAGTT 59.927 57.895 0.00 0.00 39.54 3.16
741 797 7.678194 TTTATGTTTCTTTTCAGTTTCTGCG 57.322 32.000 0.00 0.00 0.00 5.18
779 836 9.425577 TGTTCTATTTTTCGTTTTTGGTTCTTT 57.574 25.926 0.00 0.00 0.00 2.52
780 837 8.865978 GTGTTCTATTTTTCGTTTTTGGTTCTT 58.134 29.630 0.00 0.00 0.00 2.52
781 838 7.490079 GGTGTTCTATTTTTCGTTTTTGGTTCT 59.510 33.333 0.00 0.00 0.00 3.01
782 839 7.254185 GGGTGTTCTATTTTTCGTTTTTGGTTC 60.254 37.037 0.00 0.00 0.00 3.62
783 840 6.535865 GGGTGTTCTATTTTTCGTTTTTGGTT 59.464 34.615 0.00 0.00 0.00 3.67
784 841 6.044046 GGGTGTTCTATTTTTCGTTTTTGGT 58.956 36.000 0.00 0.00 0.00 3.67
785 842 6.277605 AGGGTGTTCTATTTTTCGTTTTTGG 58.722 36.000 0.00 0.00 0.00 3.28
786 843 6.141685 CGAGGGTGTTCTATTTTTCGTTTTTG 59.858 38.462 0.00 0.00 0.00 2.44
804 861 2.125350 GCAGGAGAAGCGAGGGTG 60.125 66.667 0.00 0.00 0.00 4.61
1266 1337 2.403586 GCGCAAATCAGTACGCCC 59.596 61.111 0.30 0.00 45.35 6.13
1304 1375 3.242903 CCGCTGCTCTGATATATACGGAG 60.243 52.174 12.87 12.87 40.49 4.63
1305 1376 2.683362 CCGCTGCTCTGATATATACGGA 59.317 50.000 0.00 0.00 40.49 4.69
1306 1377 2.423892 ACCGCTGCTCTGATATATACGG 59.576 50.000 0.00 0.00 43.52 4.02
1321 1583 2.060326 TTCGTCAGAAACTACCGCTG 57.940 50.000 0.00 0.00 32.65 5.18
1408 1670 6.834168 AAGAAACAAGTTCAGAAGTCCAAA 57.166 33.333 0.00 0.00 38.86 3.28
1531 1793 2.949714 AAGAATCAGCGAACGTGTTG 57.050 45.000 0.00 0.00 0.00 3.33
1599 1863 9.248291 TGTTCAAAGATTGCAATTTTAGACTTC 57.752 29.630 14.33 0.00 0.00 3.01
1740 2006 7.170151 CGGTAAAGATTTAAAAGTTGTTTGGGG 59.830 37.037 0.00 0.00 0.00 4.96
1853 2119 7.285401 GGAAGGAGTATGATTTTTGGCAAGATA 59.715 37.037 0.00 0.00 0.00 1.98
1870 2136 9.374838 GACAAATATTTAGAAACGGAAGGAGTA 57.625 33.333 0.00 0.00 0.00 2.59
1871 2137 8.101419 AGACAAATATTTAGAAACGGAAGGAGT 58.899 33.333 0.00 0.00 0.00 3.85
1872 2138 8.494016 AGACAAATATTTAGAAACGGAAGGAG 57.506 34.615 0.00 0.00 0.00 3.69
1873 2139 8.857694 AAGACAAATATTTAGAAACGGAAGGA 57.142 30.769 0.00 0.00 0.00 3.36
1874 2140 9.908152 AAAAGACAAATATTTAGAAACGGAAGG 57.092 29.630 0.00 0.00 0.00 3.46
1899 2165 9.672086 CGTGGTAGTTGATTTGAAATCTTAAAA 57.328 29.630 17.76 2.38 0.00 1.52
1900 2166 8.842280 ACGTGGTAGTTGATTTGAAATCTTAAA 58.158 29.630 17.76 2.71 0.00 1.52
1901 2167 8.385898 ACGTGGTAGTTGATTTGAAATCTTAA 57.614 30.769 17.76 3.39 0.00 1.85
1902 2168 7.972832 ACGTGGTAGTTGATTTGAAATCTTA 57.027 32.000 17.76 4.65 0.00 2.10
1903 2169 6.877611 ACGTGGTAGTTGATTTGAAATCTT 57.122 33.333 17.76 7.26 0.00 2.40
1904 2170 7.117812 CAGTACGTGGTAGTTGATTTGAAATCT 59.882 37.037 17.76 1.91 0.00 2.40
1905 2171 7.117236 TCAGTACGTGGTAGTTGATTTGAAATC 59.883 37.037 10.85 10.85 0.00 2.17
1906 2172 6.932400 TCAGTACGTGGTAGTTGATTTGAAAT 59.068 34.615 0.00 0.00 0.00 2.17
1907 2173 6.282167 TCAGTACGTGGTAGTTGATTTGAAA 58.718 36.000 0.00 0.00 0.00 2.69
1908 2174 5.845103 TCAGTACGTGGTAGTTGATTTGAA 58.155 37.500 0.00 0.00 0.00 2.69
1909 2175 5.456548 TCAGTACGTGGTAGTTGATTTGA 57.543 39.130 0.00 0.00 0.00 2.69
1910 2176 9.692749 ATATATCAGTACGTGGTAGTTGATTTG 57.307 33.333 0.00 0.00 31.02 2.32
1953 2219 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1954 2220 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1955 2221 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1956 2222 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1957 2223 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1958 2224 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1959 2225 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1960 2226 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1961 2227 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
1962 2228 5.794687 TTACATACGGAGCAAAATGAGTG 57.205 39.130 0.00 0.00 0.00 3.51
1963 2229 6.037172 GTGATTACATACGGAGCAAAATGAGT 59.963 38.462 0.00 0.00 0.00 3.41
1964 2230 6.258727 AGTGATTACATACGGAGCAAAATGAG 59.741 38.462 0.00 0.00 0.00 2.90
1965 2231 6.112734 AGTGATTACATACGGAGCAAAATGA 58.887 36.000 0.00 0.00 0.00 2.57
1966 2232 6.363577 AGTGATTACATACGGAGCAAAATG 57.636 37.500 0.00 0.00 0.00 2.32
1967 2233 6.374333 ACAAGTGATTACATACGGAGCAAAAT 59.626 34.615 0.00 0.00 0.00 1.82
1968 2234 5.703592 ACAAGTGATTACATACGGAGCAAAA 59.296 36.000 0.00 0.00 0.00 2.44
1969 2235 5.242434 ACAAGTGATTACATACGGAGCAAA 58.758 37.500 0.00 0.00 0.00 3.68
1970 2236 4.827692 ACAAGTGATTACATACGGAGCAA 58.172 39.130 0.00 0.00 0.00 3.91
1971 2237 4.465632 ACAAGTGATTACATACGGAGCA 57.534 40.909 0.00 0.00 0.00 4.26
1972 2238 4.868171 TCAACAAGTGATTACATACGGAGC 59.132 41.667 0.00 0.00 0.00 4.70
1973 2239 6.961359 TTCAACAAGTGATTACATACGGAG 57.039 37.500 0.00 0.00 35.70 4.63
1974 2240 7.822334 AGATTTCAACAAGTGATTACATACGGA 59.178 33.333 0.00 0.00 35.70 4.69
1975 2241 7.974675 AGATTTCAACAAGTGATTACATACGG 58.025 34.615 0.00 0.00 35.70 4.02
1976 2242 8.873830 AGAGATTTCAACAAGTGATTACATACG 58.126 33.333 0.00 0.00 35.70 3.06
1980 2246 9.996554 TTCTAGAGATTTCAACAAGTGATTACA 57.003 29.630 0.00 0.00 35.70 2.41
1983 2249 9.784531 TCTTTCTAGAGATTTCAACAAGTGATT 57.215 29.630 0.00 0.00 35.70 2.57
1984 2250 9.213799 GTCTTTCTAGAGATTTCAACAAGTGAT 57.786 33.333 0.00 0.00 35.70 3.06
1985 2251 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
1986 2252 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
1987 2253 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2003 2269 9.413734 CCTCCATTCCTAAATATTTGTCTTTCT 57.586 33.333 11.05 0.00 0.00 2.52
2004 2270 8.633561 CCCTCCATTCCTAAATATTTGTCTTTC 58.366 37.037 11.05 0.00 0.00 2.62
2005 2271 8.343787 TCCCTCCATTCCTAAATATTTGTCTTT 58.656 33.333 11.05 0.00 0.00 2.52
2006 2272 7.780271 GTCCCTCCATTCCTAAATATTTGTCTT 59.220 37.037 11.05 0.00 0.00 3.01
2007 2273 7.129504 AGTCCCTCCATTCCTAAATATTTGTCT 59.870 37.037 11.05 0.00 0.00 3.41
2008 2274 7.290813 AGTCCCTCCATTCCTAAATATTTGTC 58.709 38.462 11.05 0.00 0.00 3.18
2009 2275 7.226059 AGTCCCTCCATTCCTAAATATTTGT 57.774 36.000 11.05 0.00 0.00 2.83
2010 2276 8.217799 TGTAGTCCCTCCATTCCTAAATATTTG 58.782 37.037 11.05 1.40 0.00 2.32
2011 2277 8.344939 TGTAGTCCCTCCATTCCTAAATATTT 57.655 34.615 5.89 5.89 0.00 1.40
2012 2278 7.947782 TGTAGTCCCTCCATTCCTAAATATT 57.052 36.000 0.00 0.00 0.00 1.28
2013 2279 7.794683 TCTTGTAGTCCCTCCATTCCTAAATAT 59.205 37.037 0.00 0.00 0.00 1.28
2014 2280 7.136885 TCTTGTAGTCCCTCCATTCCTAAATA 58.863 38.462 0.00 0.00 0.00 1.40
2015 2281 5.970640 TCTTGTAGTCCCTCCATTCCTAAAT 59.029 40.000 0.00 0.00 0.00 1.40
2016 2282 5.347124 TCTTGTAGTCCCTCCATTCCTAAA 58.653 41.667 0.00 0.00 0.00 1.85
2017 2283 4.955335 TCTTGTAGTCCCTCCATTCCTAA 58.045 43.478 0.00 0.00 0.00 2.69
2018 2284 4.016479 ACTCTTGTAGTCCCTCCATTCCTA 60.016 45.833 0.00 0.00 30.33 2.94
2019 2285 3.246167 ACTCTTGTAGTCCCTCCATTCCT 60.246 47.826 0.00 0.00 30.33 3.36
2020 2286 3.108376 ACTCTTGTAGTCCCTCCATTCC 58.892 50.000 0.00 0.00 30.33 3.01
2021 2287 3.769844 TCACTCTTGTAGTCCCTCCATTC 59.230 47.826 0.00 0.00 35.76 2.67
2022 2288 3.772025 CTCACTCTTGTAGTCCCTCCATT 59.228 47.826 0.00 0.00 35.76 3.16
2023 2289 3.011821 TCTCACTCTTGTAGTCCCTCCAT 59.988 47.826 0.00 0.00 35.76 3.41
2024 2290 2.378886 TCTCACTCTTGTAGTCCCTCCA 59.621 50.000 0.00 0.00 35.76 3.86
2025 2291 3.088789 TCTCACTCTTGTAGTCCCTCC 57.911 52.381 0.00 0.00 35.76 4.30
2026 2292 4.281182 TGTTTCTCACTCTTGTAGTCCCTC 59.719 45.833 0.00 0.00 35.76 4.30
2027 2293 4.223953 TGTTTCTCACTCTTGTAGTCCCT 58.776 43.478 0.00 0.00 35.76 4.20
2028 2294 4.602340 TGTTTCTCACTCTTGTAGTCCC 57.398 45.455 0.00 0.00 35.76 4.46
2029 2295 5.639931 GGATTGTTTCTCACTCTTGTAGTCC 59.360 44.000 0.00 0.00 35.76 3.85
2030 2296 6.223852 TGGATTGTTTCTCACTCTTGTAGTC 58.776 40.000 0.00 0.00 35.76 2.59
2031 2297 6.174720 TGGATTGTTTCTCACTCTTGTAGT 57.825 37.500 0.00 0.00 39.81 2.73
2032 2298 8.824781 CATATGGATTGTTTCTCACTCTTGTAG 58.175 37.037 0.00 0.00 0.00 2.74
2057 2323 6.834969 TGAGAAAATGAGGCCATCAATATTCA 59.165 34.615 5.01 0.00 42.53 2.57
2107 2376 7.827236 TGTAGGATTTTGATACACCCTACTTTG 59.173 37.037 14.91 0.00 43.82 2.77
2209 2478 0.033699 AGGGGACGGTCTACACCTAC 60.034 60.000 8.23 0.00 41.17 3.18
2219 2488 2.040114 GAGGGGTAAGGGGACGGT 59.960 66.667 0.00 0.00 0.00 4.83
2242 2511 2.440627 AGGGGACGGTCTACAACTTTTT 59.559 45.455 8.23 0.00 0.00 1.94
2243 2512 2.052468 AGGGGACGGTCTACAACTTTT 58.948 47.619 8.23 0.00 0.00 2.27
2244 2513 1.725803 AGGGGACGGTCTACAACTTT 58.274 50.000 8.23 0.00 0.00 2.66
2245 2514 1.725803 AAGGGGACGGTCTACAACTT 58.274 50.000 8.23 3.37 0.00 2.66
2246 2515 2.174360 GTAAGGGGACGGTCTACAACT 58.826 52.381 8.23 0.00 0.00 3.16
2247 2516 1.205655 GGTAAGGGGACGGTCTACAAC 59.794 57.143 8.23 4.40 0.00 3.32
2248 2517 1.077663 AGGTAAGGGGACGGTCTACAA 59.922 52.381 8.23 0.00 0.00 2.41
2249 2518 0.706433 AGGTAAGGGGACGGTCTACA 59.294 55.000 8.23 0.00 0.00 2.74
2250 2519 1.857965 AAGGTAAGGGGACGGTCTAC 58.142 55.000 8.23 2.66 0.00 2.59
2256 2525 1.325476 ACGGCTAAGGTAAGGGGACG 61.325 60.000 0.00 0.00 0.00 4.79
2292 2561 5.666969 TCGAAAAATATGGCGTCAATAGG 57.333 39.130 0.00 0.00 0.00 2.57
2296 2567 4.285807 CCATCGAAAAATATGGCGTCAA 57.714 40.909 0.00 0.00 36.50 3.18
2297 2568 3.961477 CCATCGAAAAATATGGCGTCA 57.039 42.857 0.00 0.00 36.50 4.35
2413 2684 3.202001 CAAGTGTATGCCGGCGGG 61.202 66.667 29.48 9.71 0.00 6.13
2533 2804 5.794894 ACGACAAGATAACTGACAAAGGAT 58.205 37.500 0.00 0.00 0.00 3.24
2656 2929 4.649674 AGAATGATCAGGATTGCATTGCTT 59.350 37.500 10.49 0.00 31.65 3.91
2661 2934 6.264744 CAGGTTAAGAATGATCAGGATTGCAT 59.735 38.462 0.09 0.00 0.00 3.96
2665 2938 7.495934 CGTAACAGGTTAAGAATGATCAGGATT 59.504 37.037 0.09 0.00 0.00 3.01
2666 2939 6.986817 CGTAACAGGTTAAGAATGATCAGGAT 59.013 38.462 0.09 0.00 0.00 3.24
2718 2992 0.842030 ACCATCACCCTCTCTGCCAA 60.842 55.000 0.00 0.00 0.00 4.52
2768 3042 6.591935 CCCTCTGTCTGCATTATTTACCTTA 58.408 40.000 0.00 0.00 0.00 2.69
2778 3052 0.333993 AATGGCCCTCTGTCTGCATT 59.666 50.000 0.00 0.00 0.00 3.56
2779 3053 0.333993 AAATGGCCCTCTGTCTGCAT 59.666 50.000 0.00 0.00 0.00 3.96
2780 3054 0.322816 GAAATGGCCCTCTGTCTGCA 60.323 55.000 0.00 0.00 0.00 4.41
2785 3059 1.002134 CGGTGAAATGGCCCTCTGT 60.002 57.895 0.00 0.00 0.00 3.41
2791 3065 1.743394 CTTAGAACCGGTGAAATGGCC 59.257 52.381 8.52 0.00 0.00 5.36
2830 3104 8.515414 ACAGAGGTAAATATTTTTCTTCTGCAC 58.485 33.333 26.06 11.54 33.94 4.57
2917 3195 3.618351 CATGAGCTCCAGGTTCTCATTT 58.382 45.455 12.15 3.45 42.92 2.32
2927 3205 4.105727 CTCACGCATGAGCTCCAG 57.894 61.111 12.15 4.58 45.83 3.86
3057 3335 0.811616 CTGCAGGGATTCTACCACGC 60.812 60.000 5.57 0.00 0.00 5.34
3063 3341 3.330701 ACTCAAAACCTGCAGGGATTCTA 59.669 43.478 35.42 18.75 40.27 2.10
3077 3355 8.181573 TGAGTAACTCAAATCAACACTCAAAAC 58.818 33.333 0.00 0.00 37.57 2.43
3088 3366 9.685276 ATATCCACAAATGAGTAACTCAAATCA 57.315 29.630 0.00 0.00 44.04 2.57
3131 3409 8.832521 TGTACGCGGATTATTCTATTCATTTTT 58.167 29.630 12.47 0.00 0.00 1.94
3150 3428 1.333881 CCCTACGAGAGAATGTACGCG 60.334 57.143 3.53 3.53 35.67 6.01
3223 3502 6.861065 AACAAAACTATCACACGTTCTGAT 57.139 33.333 9.80 9.80 32.91 2.90
3224 3503 6.092944 ACAAACAAAACTATCACACGTTCTGA 59.907 34.615 0.00 0.00 0.00 3.27
3239 3518 7.008859 CACTGTCAAACATGAACAAACAAAAC 58.991 34.615 0.00 0.00 0.00 2.43
3311 3681 6.503616 TGAACAAACAAAATTATCACACGC 57.496 33.333 0.00 0.00 0.00 5.34
3396 3766 4.901197 AAAGGGAAGAGAGAAGGAAGTC 57.099 45.455 0.00 0.00 0.00 3.01
3464 3834 9.161629 TCATGACGTGTTGTTTTCTTCATATAT 57.838 29.630 0.00 0.00 0.00 0.86
3465 3835 8.541133 TCATGACGTGTTGTTTTCTTCATATA 57.459 30.769 0.00 0.00 0.00 0.86
3620 3998 0.104304 CAGGAAGCTATTACGGCCGT 59.896 55.000 36.01 36.01 0.00 5.68
3681 4061 2.231380 ATGGAAAGAGGCCACGGGT 61.231 57.895 5.01 0.00 38.44 5.28
3917 4297 2.124983 TCTCGATGGCCTTGCAGC 60.125 61.111 3.32 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.