Multiple sequence alignment - TraesCS2D01G206400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G206400 chr2D 100.000 2510 0 0 2577 5086 159688479 159685970 0.000000e+00 4636.0
1 TraesCS2D01G206400 chr2D 100.000 2386 0 0 1 2386 159691055 159688670 0.000000e+00 4407.0
2 TraesCS2D01G206400 chr2D 97.238 181 3 2 4908 5086 384752962 384752782 6.400000e-79 305.0
3 TraesCS2D01G206400 chr2D 98.276 174 1 1 4915 5086 31669768 31669595 2.300000e-78 303.0
4 TraesCS2D01G206400 chr2B 92.739 2176 102 31 2757 4910 216854560 216852419 0.000000e+00 3092.0
5 TraesCS2D01G206400 chr2B 88.697 867 70 19 34 882 216858941 216858085 0.000000e+00 1033.0
6 TraesCS2D01G206400 chr2B 89.134 681 40 8 885 1552 216856619 216855960 0.000000e+00 817.0
7 TraesCS2D01G206400 chr2B 84.334 383 43 14 1642 2017 216855914 216855542 4.840000e-95 359.0
8 TraesCS2D01G206400 chr2B 86.986 292 27 8 1642 1932 239996771 239996490 8.220000e-83 318.0
9 TraesCS2D01G206400 chr2B 96.296 54 2 0 1499 1552 239996870 239996817 7.010000e-14 89.8
10 TraesCS2D01G206400 chr2B 100.000 30 0 0 1598 1627 216855942 216855913 7.110000e-04 56.5
11 TraesCS2D01G206400 chr2A 95.279 1737 55 9 2577 4300 170934004 170932282 0.000000e+00 2728.0
12 TraesCS2D01G206400 chr2A 91.644 1460 70 21 957 2373 170935518 170934068 0.000000e+00 1973.0
13 TraesCS2D01G206400 chr2A 91.369 336 28 1 4380 4715 170915312 170914978 4.640000e-125 459.0
14 TraesCS2D01G206400 chr2A 89.773 352 28 3 4570 4913 170914972 170914621 1.300000e-120 444.0
15 TraesCS2D01G206400 chr2A 94.186 86 4 1 4299 4384 170932121 170932037 4.130000e-26 130.0
16 TraesCS2D01G206400 chr7B 86.986 292 27 8 1642 1932 712761089 712760808 8.220000e-83 318.0
17 TraesCS2D01G206400 chr7B 100.000 30 0 0 1598 1627 712761117 712761088 7.110000e-04 56.5
18 TraesCS2D01G206400 chr6B 87.108 287 25 9 1647 1932 664806340 664806615 1.060000e-81 315.0
19 TraesCS2D01G206400 chr6B 89.506 162 14 1 1391 1552 664806131 664806289 8.630000e-48 202.0
20 TraesCS2D01G206400 chr6B 100.000 30 0 0 1598 1627 664806307 664806336 7.110000e-04 56.5
21 TraesCS2D01G206400 chr3B 86.301 292 28 9 1642 1932 233224825 233225105 1.780000e-79 307.0
22 TraesCS2D01G206400 chr3B 85.959 292 30 8 1642 1932 272587703 272587422 8.280000e-78 302.0
23 TraesCS2D01G206400 chr3B 89.691 97 7 2 2017 2110 394954645 394954549 2.490000e-23 121.0
24 TraesCS2D01G206400 chr3B 94.444 54 3 0 1499 1552 272587802 272587749 3.260000e-12 84.2
25 TraesCS2D01G206400 chr3B 100.000 30 0 0 1598 1627 272587731 272587702 7.110000e-04 56.5
26 TraesCS2D01G206400 chr1D 98.844 173 1 1 4915 5086 455642272 455642100 1.780000e-79 307.0
27 TraesCS2D01G206400 chr1D 92.045 88 7 0 2023 2110 59875944 59876031 1.920000e-24 124.0
28 TraesCS2D01G206400 chr7D 98.286 175 1 1 4914 5086 574707394 574707220 6.400000e-79 305.0
29 TraesCS2D01G206400 chr7D 97.222 180 2 2 4909 5086 587546421 587546599 8.280000e-78 302.0
30 TraesCS2D01G206400 chr6D 98.276 174 1 1 4915 5086 114768407 114768234 2.300000e-78 303.0
31 TraesCS2D01G206400 chr6D 98.266 173 2 1 4915 5086 21819522 21819350 8.280000e-78 302.0
32 TraesCS2D01G206400 chr6D 98.266 173 2 1 4915 5086 256572303 256572475 8.280000e-78 302.0
33 TraesCS2D01G206400 chr5B 85.959 292 30 8 1642 1932 619683460 619683179 8.280000e-78 302.0
34 TraesCS2D01G206400 chr5B 88.235 102 7 5 2013 2111 27817320 27817221 3.220000e-22 117.0
35 TraesCS2D01G206400 chr5B 94.444 54 3 0 1499 1552 619683559 619683506 3.260000e-12 84.2
36 TraesCS2D01G206400 chr5B 100.000 30 0 0 1598 1627 619683488 619683459 7.110000e-04 56.5
37 TraesCS2D01G206400 chrUn 96.216 185 2 4 4905 5086 98338762 98338580 1.070000e-76 298.0
38 TraesCS2D01G206400 chr4D 92.638 163 7 3 3136 3294 491692364 491692203 3.960000e-56 230.0
39 TraesCS2D01G206400 chr4D 95.276 127 4 2 3169 3294 490602926 490602801 3.110000e-47 200.0
40 TraesCS2D01G206400 chr4B 91.411 163 9 4 3136 3294 628631680 628631841 8.570000e-53 219.0
41 TraesCS2D01G206400 chr5A 90.798 163 10 3 3136 3294 672417019 672417180 3.990000e-51 213.0
42 TraesCS2D01G206400 chr6A 92.727 110 8 0 1647 1756 567628340 567628449 5.270000e-35 159.0
43 TraesCS2D01G206400 chr6A 96.296 54 2 0 1499 1552 567628236 567628289 7.010000e-14 89.8
44 TraesCS2D01G206400 chr6A 94.444 54 3 0 1499 1552 580784915 580784968 3.260000e-12 84.2
45 TraesCS2D01G206400 chr6A 100.000 30 0 0 1598 1627 567628307 567628336 7.110000e-04 56.5
46 TraesCS2D01G206400 chr3A 94.059 101 6 0 1656 1756 54532017 54531917 2.450000e-33 154.0
47 TraesCS2D01G206400 chr3A 90.722 97 6 2 2017 2110 397141469 397141373 5.350000e-25 126.0
48 TraesCS2D01G206400 chr3A 92.045 88 7 0 2023 2110 58929337 58929424 1.920000e-24 124.0
49 TraesCS2D01G206400 chr3A 96.296 54 2 0 1499 1552 54532130 54532077 7.010000e-14 89.8
50 TraesCS2D01G206400 chr4A 90.000 100 7 3 2013 2110 704528104 704528202 5.350000e-25 126.0
51 TraesCS2D01G206400 chr3D 91.304 92 6 1 2021 2110 324311073 324311164 1.920000e-24 124.0
52 TraesCS2D01G206400 chr1A 92.045 88 4 1 2023 2110 296939169 296939085 2.490000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G206400 chr2D 159685970 159691055 5085 True 4521.500000 4636 100.0000 1 5086 2 chr2D.!!$R3 5085
1 TraesCS2D01G206400 chr2B 216852419 216858941 6522 True 1071.500000 3092 90.9808 34 4910 5 chr2B.!!$R1 4876
2 TraesCS2D01G206400 chr2A 170932037 170935518 3481 True 1610.333333 2728 93.7030 957 4384 3 chr2A.!!$R2 3427
3 TraesCS2D01G206400 chr2A 170914621 170915312 691 True 451.500000 459 90.5710 4380 4913 2 chr2A.!!$R1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
123 124 0.038166 TGTTGGATTCCCTCAGCACC 59.962 55.0 0.00 0.0 0.00 5.01 F
1015 2496 0.030369 GTCATACGAGTACCGGGCAG 59.970 60.0 6.32 0.0 43.93 4.85 F
2380 4305 0.034337 TAGCACCCGAGTGTTGTTCC 59.966 55.0 0.00 0.0 46.35 3.62 F
3096 5129 0.107993 CACTGTCGTCATCTGCCCAT 60.108 55.0 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1990 3516 0.249573 AAGCACACATGTTTGCCTGC 60.250 50.000 28.61 14.96 39.75 4.85 R
2965 4998 0.243636 GCACAATGCCTGGTTACACC 59.756 55.000 0.00 0.00 37.42 4.16 R
3344 5377 1.379977 GGCAAAGGGGAAGGTAGGC 60.380 63.158 0.00 0.00 0.00 3.93 R
4867 7242 0.036164 CCAATGAGGAACCACGGTCA 59.964 55.000 0.00 0.00 41.22 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 1.026718 GGCCGGATGAACACTGGAAG 61.027 60.000 5.05 0.00 42.29 3.46
68 69 3.769844 GGATGAACACTGGAAGAGGTCTA 59.230 47.826 0.00 0.00 42.14 2.59
71 72 1.546961 ACACTGGAAGAGGTCTACCG 58.453 55.000 0.00 0.00 38.25 4.02
100 101 3.488047 CGACCATTTGTCAAGGCATCATC 60.488 47.826 0.00 0.00 44.71 2.92
101 102 2.424601 ACCATTTGTCAAGGCATCATCG 59.575 45.455 0.00 0.00 0.00 3.84
103 104 1.462616 TTTGTCAAGGCATCATCGGG 58.537 50.000 0.00 0.00 0.00 5.14
104 105 0.327924 TTGTCAAGGCATCATCGGGT 59.672 50.000 0.00 0.00 0.00 5.28
122 123 1.168714 GTGTTGGATTCCCTCAGCAC 58.831 55.000 0.00 0.00 37.78 4.40
123 124 0.038166 TGTTGGATTCCCTCAGCACC 59.962 55.000 0.00 0.00 0.00 5.01
124 125 0.038166 GTTGGATTCCCTCAGCACCA 59.962 55.000 0.00 0.00 0.00 4.17
139 140 2.440147 CCACAATGCCCCACCTCA 59.560 61.111 0.00 0.00 0.00 3.86
163 164 1.138069 TCCTCTCGAGTGTTGTGCAAA 59.862 47.619 13.13 0.00 0.00 3.68
180 181 1.608590 CAAACATGAGCCTTGTTCCGT 59.391 47.619 0.00 0.00 36.32 4.69
182 183 1.523758 ACATGAGCCTTGTTCCGTTC 58.476 50.000 0.00 0.00 0.00 3.95
230 231 0.886043 AACCGGTTCGCCAAGGTTAC 60.886 55.000 15.86 0.00 44.29 2.50
232 233 0.885596 CCGGTTCGCCAAGGTTACAA 60.886 55.000 0.00 0.00 37.00 2.41
233 234 0.515564 CGGTTCGCCAAGGTTACAAG 59.484 55.000 0.00 0.00 37.00 3.16
250 251 0.544833 AAGCATTGCAACATCCCCCA 60.545 50.000 11.91 0.00 0.00 4.96
255 256 0.894141 TTGCAACATCCCCCATTTCG 59.106 50.000 0.00 0.00 0.00 3.46
256 257 1.141665 GCAACATCCCCCATTTCGC 59.858 57.895 0.00 0.00 0.00 4.70
270 271 0.790207 TTTCGCAGTCGCAACATCTC 59.210 50.000 0.00 0.00 38.40 2.75
315 316 0.885196 CCAACCATAACAACACCCCG 59.115 55.000 0.00 0.00 0.00 5.73
347 351 0.819582 CATCTCCCATGTTGCAACCC 59.180 55.000 26.14 3.40 0.00 4.11
362 366 4.154347 CCCAGAGAGCCCTCGCAC 62.154 72.222 2.02 0.00 44.08 5.34
401 405 1.152881 CCAGGCCTTGTAGCATCCC 60.153 63.158 0.00 0.00 0.00 3.85
417 421 3.848726 CATCCCTTGCAACAACATTACC 58.151 45.455 0.00 0.00 0.00 2.85
420 424 2.351350 CCCTTGCAACAACATTACCGTC 60.351 50.000 0.00 0.00 0.00 4.79
442 446 1.308998 CGGAAAACTGTTCCTGCACT 58.691 50.000 3.76 0.00 36.45 4.40
445 449 2.033424 GGAAAACTGTTCCTGCACTGAC 59.967 50.000 0.00 0.00 35.73 3.51
449 453 1.233019 CTGTTCCTGCACTGACTTGG 58.767 55.000 0.00 0.00 0.00 3.61
453 457 1.673665 CCTGCACTGACTTGGAGGC 60.674 63.158 0.00 0.00 46.76 4.70
481 485 2.197324 GGTGACCCCCTTGCAACA 59.803 61.111 0.00 0.00 0.00 3.33
500 504 0.617820 AGTGTCCCTCATTAGCCCGT 60.618 55.000 0.00 0.00 0.00 5.28
514 518 1.367840 CCCGTAGCAGGTAGGATGC 59.632 63.158 0.77 0.00 44.18 3.91
515 519 1.367840 CCGTAGCAGGTAGGATGCC 59.632 63.158 0.77 0.00 44.97 4.40
522 526 2.902343 GGTAGGATGCCGCCTTGC 60.902 66.667 0.00 0.00 39.50 4.01
525 529 2.669133 TAGGATGCCGCCTTGCAGT 61.669 57.895 0.00 0.00 45.93 4.40
526 530 2.874648 TAGGATGCCGCCTTGCAGTG 62.875 60.000 0.00 0.00 45.93 3.66
545 549 2.476051 CGACGCTGGTCATGCAAC 59.524 61.111 0.00 0.00 43.61 4.17
548 552 2.227968 GACGCTGGTCATGCAACGTC 62.228 60.000 11.64 11.64 42.91 4.34
550 554 2.027073 GCTGGTCATGCAACGTCGA 61.027 57.895 0.00 0.00 0.00 4.20
560 578 3.671411 AACGTCGAGCTCAGCGGT 61.671 61.111 24.31 18.47 0.00 5.68
592 610 1.079819 AGTGTCGCCTTGTGATCCG 60.080 57.895 0.00 0.00 0.00 4.18
615 633 2.813474 GCATGTGTAGCACGCGGA 60.813 61.111 12.47 0.00 37.14 5.54
621 639 3.488090 GTAGCACGCGGAGTTGCC 61.488 66.667 12.47 0.00 0.00 4.52
639 657 5.530171 AGTTGCCTCAGCTTGTGATAATATG 59.470 40.000 0.00 0.00 40.80 1.78
644 662 6.512415 GCCTCAGCTTGTGATAATATGTTCAC 60.512 42.308 10.09 10.09 38.41 3.18
672 690 2.379907 AGTATTGGGATGGCATTAGGGG 59.620 50.000 0.00 0.00 0.00 4.79
682 700 1.440145 GCATTAGGGGCACGAGCTTC 61.440 60.000 4.48 0.00 41.70 3.86
691 709 2.110213 ACGAGCTTCGGTGCCAAA 59.890 55.556 9.75 0.00 45.59 3.28
692 710 1.961277 ACGAGCTTCGGTGCCAAAG 60.961 57.895 9.75 0.00 45.59 2.77
693 711 1.667830 CGAGCTTCGGTGCCAAAGA 60.668 57.895 0.00 0.00 36.00 2.52
694 712 1.630244 CGAGCTTCGGTGCCAAAGAG 61.630 60.000 0.00 0.00 36.00 2.85
695 713 0.320771 GAGCTTCGGTGCCAAAGAGA 60.321 55.000 0.00 0.00 0.00 3.10
696 714 0.321122 AGCTTCGGTGCCAAAGAGAG 60.321 55.000 0.00 0.00 0.00 3.20
697 715 0.320771 GCTTCGGTGCCAAAGAGAGA 60.321 55.000 0.00 0.00 0.00 3.10
698 716 1.719600 CTTCGGTGCCAAAGAGAGAG 58.280 55.000 0.00 0.00 0.00 3.20
704 722 0.987294 TGCCAAAGAGAGAGGGGAAG 59.013 55.000 0.00 0.00 0.00 3.46
708 726 2.560841 CCAAAGAGAGAGGGGAAGGAGA 60.561 54.545 0.00 0.00 0.00 3.71
734 752 1.282248 GACGACCACCACATCACACG 61.282 60.000 0.00 0.00 0.00 4.49
802 820 2.358737 CGTGTGACTTGCCCCTCC 60.359 66.667 0.00 0.00 0.00 4.30
805 823 1.770110 TGTGACTTGCCCCTCCTGT 60.770 57.895 0.00 0.00 0.00 4.00
822 840 2.135933 CTGTCTTCAAGTCACCCGTTC 58.864 52.381 0.00 0.00 0.00 3.95
876 894 1.597199 CGATGCAAGCACATGATCAGC 60.597 52.381 0.00 0.00 0.00 4.26
882 900 1.028330 AGCACATGATCAGCCGGTTG 61.028 55.000 12.81 12.81 0.00 3.77
922 2403 2.144482 CCGTACGGTCACACTTTTCT 57.856 50.000 26.39 0.00 0.00 2.52
931 2412 2.473984 GTCACACTTTTCTCGTTACCCG 59.526 50.000 0.00 0.00 38.13 5.28
938 2419 2.202570 CTCGTTACCCGCTCACCG 60.203 66.667 0.00 0.00 36.19 4.94
939 2420 2.672651 TCGTTACCCGCTCACCGA 60.673 61.111 0.00 0.00 40.02 4.69
948 2429 2.885861 GCTCACCGACGACTCCAT 59.114 61.111 0.00 0.00 0.00 3.41
951 2432 0.378962 CTCACCGACGACTCCATCTC 59.621 60.000 0.00 0.00 0.00 2.75
952 2433 1.030488 TCACCGACGACTCCATCTCC 61.030 60.000 0.00 0.00 0.00 3.71
979 2460 2.742954 AACAAAACGCGTACCAACTC 57.257 45.000 14.46 0.00 0.00 3.01
1015 2496 0.030369 GTCATACGAGTACCGGGCAG 59.970 60.000 6.32 0.00 43.93 4.85
1077 2571 1.834188 ATTCGATTTCGTGCCCCTTT 58.166 45.000 0.00 0.00 40.80 3.11
1336 2830 2.434774 GTTTCCGCCTCCCCTGTT 59.565 61.111 0.00 0.00 0.00 3.16
1348 2842 0.905357 CCCCTGTTCCTCTGATTCGT 59.095 55.000 0.00 0.00 0.00 3.85
1353 2847 4.562757 CCCTGTTCCTCTGATTCGTTGTTA 60.563 45.833 0.00 0.00 0.00 2.41
1365 2859 5.234543 TGATTCGTTGTTATGTTCGTTGACA 59.765 36.000 0.00 0.00 0.00 3.58
1387 2881 5.647658 ACAGAATTTGACTATTGATTGGCGA 59.352 36.000 0.00 0.00 0.00 5.54
1417 2911 4.094887 TGGATCAATTGCGTTTAGAGCTTC 59.905 41.667 0.00 0.00 35.28 3.86
1422 2916 2.799540 GCGTTTAGAGCTTCGGCCG 61.800 63.158 22.12 22.12 43.01 6.13
1435 2929 1.299165 CGGCCGGTCTGAGTATTCG 60.299 63.158 20.10 0.00 0.00 3.34
1436 2930 1.814527 GGCCGGTCTGAGTATTCGT 59.185 57.895 1.90 0.00 0.00 3.85
1437 2931 0.175073 GGCCGGTCTGAGTATTCGTT 59.825 55.000 1.90 0.00 0.00 3.85
1440 2934 2.740447 GCCGGTCTGAGTATTCGTTTTT 59.260 45.455 1.90 0.00 0.00 1.94
1462 2956 2.213499 GTGGATTATGGGACGCAAGAG 58.787 52.381 0.00 0.00 43.62 2.85
1485 2979 1.199558 GTTCCTTCTCTGTAGACGCGT 59.800 52.381 13.85 13.85 0.00 6.01
1586 3091 6.257586 AGTAAGATAAGAACTCACCTCAGGT 58.742 40.000 0.00 0.00 35.62 4.00
1760 3273 3.240861 GCTGAAGTAGAGTTATTGCGTCG 59.759 47.826 0.00 0.00 0.00 5.12
1852 3366 6.790285 ATGCTTTGGTTGATTGAAACATTC 57.210 33.333 0.00 0.00 28.87 2.67
1889 3404 7.254658 CGTTGTGCTAGGTTATTAGTTTATGGG 60.255 40.741 0.00 0.00 0.00 4.00
1892 3407 6.715264 GTGCTAGGTTATTAGTTTATGGGCAT 59.285 38.462 0.00 0.00 0.00 4.40
1906 3421 3.737559 TGGGCATATGTTTCTGGACTT 57.262 42.857 4.29 0.00 0.00 3.01
1936 3451 8.098912 TGTAAAACCTACTTGATCCTAAGTTCC 58.901 37.037 3.97 0.00 41.01 3.62
1954 3469 5.186198 AGTTCCTAACTGCCATTGTCATAC 58.814 41.667 0.00 0.00 41.01 2.39
1957 3472 3.627577 CCTAACTGCCATTGTCATACACC 59.372 47.826 0.00 0.00 0.00 4.16
2008 3534 1.111116 AGCAGGCAAACATGTGTGCT 61.111 50.000 34.04 22.25 40.70 4.40
2107 3633 1.424638 ATATTGTGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2187 3715 3.936372 GTGTCCTGAAGCACACTACTA 57.064 47.619 0.00 0.00 39.92 1.82
2290 3820 8.029522 GGAAAAAGGAAAAGAAGCTTAATCGAT 58.970 33.333 0.00 0.00 0.00 3.59
2301 3831 7.375053 AGAAGCTTAATCGATTAGGAGTGATC 58.625 38.462 26.26 16.15 0.00 2.92
2310 3840 6.100004 TCGATTAGGAGTGATCTGTTTTCAC 58.900 40.000 0.00 0.00 43.05 3.18
2369 3899 1.143183 ATAACCGCAGTAGCACCCG 59.857 57.895 0.00 0.00 42.27 5.28
2379 4304 1.145803 GTAGCACCCGAGTGTTGTTC 58.854 55.000 0.00 0.00 46.35 3.18
2380 4305 0.034337 TAGCACCCGAGTGTTGTTCC 59.966 55.000 0.00 0.00 46.35 3.62
2381 4306 1.525077 GCACCCGAGTGTTGTTCCA 60.525 57.895 0.00 0.00 46.35 3.53
2382 4307 1.507141 GCACCCGAGTGTTGTTCCAG 61.507 60.000 0.00 0.00 46.35 3.86
2383 4308 0.179056 CACCCGAGTGTTGTTCCAGT 60.179 55.000 0.00 0.00 39.30 4.00
2385 4310 0.944386 CCCGAGTGTTGTTCCAGTTG 59.056 55.000 0.00 0.00 0.00 3.16
2608 4533 5.428783 ACATGCAGTCCCTATATATTACCCC 59.571 44.000 0.00 0.00 0.00 4.95
2965 4998 7.551585 AGTCTAAATAGTTCTGTCATCACTGG 58.448 38.462 0.00 0.00 0.00 4.00
2969 5002 2.050144 AGTTCTGTCATCACTGGGTGT 58.950 47.619 0.00 0.00 34.79 4.16
2971 5004 3.646162 AGTTCTGTCATCACTGGGTGTAA 59.354 43.478 0.00 0.00 34.79 2.41
2986 5019 1.068333 GTGTAACCAGGCATTGTGCTG 60.068 52.381 1.64 0.00 44.28 4.41
2995 5028 1.000607 GGCATTGTGCTGATATGGCTG 60.001 52.381 1.64 0.00 44.28 4.85
3096 5129 0.107993 CACTGTCGTCATCTGCCCAT 60.108 55.000 0.00 0.00 0.00 4.00
3251 5284 3.251729 GCAGAGAACAGCTGACATTTTCA 59.748 43.478 23.35 0.00 35.39 2.69
3344 5377 1.244019 CGGGCCCAAGAAAACCAGAG 61.244 60.000 24.92 0.00 0.00 3.35
3797 5830 0.036010 CCTGCCCGTGAGTCATTTCT 60.036 55.000 0.00 0.00 0.00 2.52
3809 5842 7.462109 GTGAGTCATTTCTCATGAGTATGTC 57.538 40.000 25.66 22.50 44.59 3.06
3841 5874 6.720112 ATGCCTGATTGCTGTGTAATTTAT 57.280 33.333 0.00 0.00 0.00 1.40
3954 5987 5.584649 TGTCAATTGAATGAATCCCGTACTC 59.415 40.000 10.35 0.00 0.00 2.59
3975 6008 5.924825 ACTCGACACCAGAAACTAAATGTAC 59.075 40.000 0.00 0.00 0.00 2.90
4016 6049 5.491078 AGACCCCAAACTATTGTATCTGGAA 59.509 40.000 5.07 0.00 34.60 3.53
4027 6061 3.031736 TGTATCTGGAACACTCTAGCCC 58.968 50.000 0.00 0.00 30.40 5.19
4028 6062 2.254152 ATCTGGAACACTCTAGCCCA 57.746 50.000 0.00 0.00 30.40 5.36
4029 6063 1.267121 TCTGGAACACTCTAGCCCAC 58.733 55.000 0.00 0.00 30.40 4.61
4030 6064 0.250513 CTGGAACACTCTAGCCCACC 59.749 60.000 0.00 0.00 0.00 4.61
4060 6094 0.593128 CAAGGACAAAACGGCTCCTG 59.407 55.000 0.00 0.00 34.46 3.86
4114 6148 5.185249 ACGTGGTCTATTTCTGTGATGTACT 59.815 40.000 0.00 0.00 0.00 2.73
4121 6155 7.169982 GTCTATTTCTGTGATGTACTATGCACC 59.830 40.741 0.00 0.00 0.00 5.01
4190 6236 4.702612 TGTTAGTTGGTTTCTTGCAAGTCA 59.297 37.500 25.19 15.99 0.00 3.41
4246 6292 8.915654 TCACAATCTATATCGATGAACATTTCG 58.084 33.333 8.54 0.00 36.72 3.46
4269 6315 7.699566 TCGTGTTTTTCAAAGCTTTACATACT 58.300 30.769 12.25 0.00 0.00 2.12
4293 6339 9.683069 ACTCTTTTGATTGTTGCTAAATACTTG 57.317 29.630 0.00 0.00 0.00 3.16
4551 6759 1.984570 CTCCACTTCCTCCTCGGCA 60.985 63.158 0.00 0.00 0.00 5.69
4567 6775 0.370273 GGCACTTGTAGCATTCGTCG 59.630 55.000 0.00 0.00 0.00 5.12
4649 7007 2.263741 CCTTGCCTTCTTGTGCGCT 61.264 57.895 9.73 0.00 0.00 5.92
4655 7013 1.132640 CTTCTTGTGCGCTAACGGC 59.867 57.895 9.73 0.00 40.57 5.68
4730 7088 2.301505 GGCATGAGATGACCGAACG 58.698 57.895 0.00 0.00 29.82 3.95
4746 7105 6.814644 TGACCGAACGACATGATTTTTATAGT 59.185 34.615 0.00 0.00 0.00 2.12
4811 7178 1.926511 GCATGGGGAAGTCAAGCACG 61.927 60.000 0.00 0.00 0.00 5.34
4844 7211 1.225855 GCACGACATCAGAAACCACA 58.774 50.000 0.00 0.00 0.00 4.17
4864 7239 1.544691 AGTGTGTAAGCACCGACTAGG 59.455 52.381 0.00 0.00 44.65 3.02
4867 7242 1.246056 TGTAAGCACCGACTAGGCGT 61.246 55.000 18.49 1.81 46.52 5.68
4910 7285 0.106708 CATGCACGTAGGCCCATAGT 59.893 55.000 0.00 0.00 0.00 2.12
4913 7288 1.682451 GCACGTAGGCCCATAGTGGA 61.682 60.000 16.54 0.00 40.96 4.02
4914 7289 0.389391 CACGTAGGCCCATAGTGGAG 59.611 60.000 0.00 0.00 40.96 3.86
4915 7290 0.759436 ACGTAGGCCCATAGTGGAGG 60.759 60.000 0.00 0.00 40.96 4.30
4916 7291 0.469331 CGTAGGCCCATAGTGGAGGA 60.469 60.000 0.00 0.00 40.96 3.71
4917 7292 1.049402 GTAGGCCCATAGTGGAGGAC 58.951 60.000 0.00 0.00 40.96 3.85
4918 7293 0.469331 TAGGCCCATAGTGGAGGACG 60.469 60.000 0.00 0.00 40.96 4.79
4919 7294 1.760875 GGCCCATAGTGGAGGACGA 60.761 63.158 0.00 0.00 40.96 4.20
4920 7295 1.742768 GCCCATAGTGGAGGACGAG 59.257 63.158 0.00 0.00 40.96 4.18
4921 7296 0.755698 GCCCATAGTGGAGGACGAGA 60.756 60.000 0.00 0.00 40.96 4.04
4922 7297 1.033574 CCCATAGTGGAGGACGAGAC 58.966 60.000 0.00 0.00 40.96 3.36
4923 7298 1.410365 CCCATAGTGGAGGACGAGACT 60.410 57.143 0.00 0.00 40.96 3.24
4924 7299 2.379972 CCATAGTGGAGGACGAGACTT 58.620 52.381 0.00 0.00 40.96 3.01
4925 7300 2.099921 CCATAGTGGAGGACGAGACTTG 59.900 54.545 0.00 0.00 40.96 3.16
4926 7301 1.174783 TAGTGGAGGACGAGACTTGC 58.825 55.000 0.00 0.00 0.00 4.01
4927 7302 1.079750 GTGGAGGACGAGACTTGCC 60.080 63.158 0.00 0.00 0.00 4.52
4928 7303 1.228894 TGGAGGACGAGACTTGCCT 60.229 57.895 5.62 5.62 0.00 4.75
4929 7304 1.216710 GGAGGACGAGACTTGCCTG 59.783 63.158 9.62 0.00 0.00 4.85
4930 7305 1.446966 GAGGACGAGACTTGCCTGC 60.447 63.158 9.62 0.00 0.00 4.85
4931 7306 1.882989 GAGGACGAGACTTGCCTGCT 61.883 60.000 9.62 0.00 0.00 4.24
4932 7307 1.446966 GGACGAGACTTGCCTGCTC 60.447 63.158 0.00 0.00 0.00 4.26
4933 7308 1.446966 GACGAGACTTGCCTGCTCC 60.447 63.158 0.00 0.00 0.00 4.70
4934 7309 2.125350 CGAGACTTGCCTGCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
4935 7310 2.654079 CGAGACTTGCCTGCTCCCT 61.654 63.158 0.00 0.00 0.00 4.20
4936 7311 1.682257 GAGACTTGCCTGCTCCCTT 59.318 57.895 0.00 0.00 0.00 3.95
4937 7312 0.392327 GAGACTTGCCTGCTCCCTTC 60.392 60.000 0.00 0.00 0.00 3.46
4938 7313 1.377856 GACTTGCCTGCTCCCTTCC 60.378 63.158 0.00 0.00 0.00 3.46
4939 7314 2.044551 CTTGCCTGCTCCCTTCCC 60.045 66.667 0.00 0.00 0.00 3.97
4940 7315 2.858476 TTGCCTGCTCCCTTCCCA 60.858 61.111 0.00 0.00 0.00 4.37
4941 7316 2.220786 CTTGCCTGCTCCCTTCCCAT 62.221 60.000 0.00 0.00 0.00 4.00
4942 7317 2.123982 GCCTGCTCCCTTCCCATG 60.124 66.667 0.00 0.00 0.00 3.66
4943 7318 2.123982 CCTGCTCCCTTCCCATGC 60.124 66.667 0.00 0.00 0.00 4.06
4944 7319 2.687610 CCTGCTCCCTTCCCATGCT 61.688 63.158 0.00 0.00 0.00 3.79
4945 7320 1.153005 CTGCTCCCTTCCCATGCTC 60.153 63.158 0.00 0.00 0.00 4.26
4946 7321 2.194326 GCTCCCTTCCCATGCTCC 59.806 66.667 0.00 0.00 0.00 4.70
4947 7322 2.922234 CTCCCTTCCCATGCTCCC 59.078 66.667 0.00 0.00 0.00 4.30
4948 7323 2.002977 CTCCCTTCCCATGCTCCCA 61.003 63.158 0.00 0.00 0.00 4.37
4949 7324 1.309013 TCCCTTCCCATGCTCCCAT 60.309 57.895 0.00 0.00 0.00 4.00
4950 7325 1.152368 CCCTTCCCATGCTCCCATC 59.848 63.158 0.00 0.00 0.00 3.51
4951 7326 1.152368 CCTTCCCATGCTCCCATCC 59.848 63.158 0.00 0.00 0.00 3.51
4952 7327 1.228063 CTTCCCATGCTCCCATCCG 60.228 63.158 0.00 0.00 0.00 4.18
4953 7328 1.987807 CTTCCCATGCTCCCATCCGT 61.988 60.000 0.00 0.00 0.00 4.69
4954 7329 2.203252 CCCATGCTCCCATCCGTG 60.203 66.667 0.00 0.00 0.00 4.94
4955 7330 2.903855 CCATGCTCCCATCCGTGC 60.904 66.667 0.00 0.00 0.00 5.34
4956 7331 2.191375 CATGCTCCCATCCGTGCT 59.809 61.111 0.00 0.00 0.00 4.40
4957 7332 1.890979 CATGCTCCCATCCGTGCTC 60.891 63.158 0.00 0.00 0.00 4.26
4958 7333 3.112205 ATGCTCCCATCCGTGCTCC 62.112 63.158 0.00 0.00 0.00 4.70
4959 7334 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
4960 7335 4.227134 CTCCCATCCGTGCTCCCG 62.227 72.222 0.00 0.00 0.00 5.14
4970 7345 4.830765 TGCTCCCGCATACGTGGC 62.831 66.667 0.00 0.21 42.25 5.01
4971 7346 4.530857 GCTCCCGCATACGTGGCT 62.531 66.667 11.48 0.00 41.87 4.75
4972 7347 2.186903 CTCCCGCATACGTGGCTT 59.813 61.111 11.48 0.00 41.87 4.35
4973 7348 2.125310 TCCCGCATACGTGGCTTG 60.125 61.111 11.48 3.68 41.87 4.01
4974 7349 2.125310 CCCGCATACGTGGCTTGA 60.125 61.111 11.48 0.00 41.87 3.02
4975 7350 1.523711 CCCGCATACGTGGCTTGAT 60.524 57.895 11.48 0.00 41.87 2.57
4976 7351 1.095228 CCCGCATACGTGGCTTGATT 61.095 55.000 11.48 0.00 41.87 2.57
4977 7352 0.732571 CCGCATACGTGGCTTGATTT 59.267 50.000 11.48 0.00 35.59 2.17
4978 7353 1.531677 CCGCATACGTGGCTTGATTTG 60.532 52.381 11.48 0.00 35.59 2.32
4979 7354 1.396648 CGCATACGTGGCTTGATTTGA 59.603 47.619 11.48 0.00 33.53 2.69
4980 7355 2.032054 CGCATACGTGGCTTGATTTGAT 59.968 45.455 11.48 0.00 33.53 2.57
4981 7356 3.487376 CGCATACGTGGCTTGATTTGATT 60.487 43.478 11.48 0.00 33.53 2.57
4982 7357 3.792956 GCATACGTGGCTTGATTTGATTG 59.207 43.478 0.00 0.00 0.00 2.67
4983 7358 4.353737 CATACGTGGCTTGATTTGATTGG 58.646 43.478 0.00 0.00 0.00 3.16
4984 7359 2.513753 ACGTGGCTTGATTTGATTGGA 58.486 42.857 0.00 0.00 0.00 3.53
4985 7360 2.890311 ACGTGGCTTGATTTGATTGGAA 59.110 40.909 0.00 0.00 0.00 3.53
4986 7361 3.057315 ACGTGGCTTGATTTGATTGGAAG 60.057 43.478 0.00 0.00 0.00 3.46
4987 7362 3.191162 CGTGGCTTGATTTGATTGGAAGA 59.809 43.478 0.00 0.00 0.00 2.87
4988 7363 4.321156 CGTGGCTTGATTTGATTGGAAGAA 60.321 41.667 0.00 0.00 0.00 2.52
4989 7364 5.540911 GTGGCTTGATTTGATTGGAAGAAA 58.459 37.500 0.00 0.00 0.00 2.52
4990 7365 5.990996 GTGGCTTGATTTGATTGGAAGAAAA 59.009 36.000 0.00 0.00 0.00 2.29
4991 7366 6.652062 GTGGCTTGATTTGATTGGAAGAAAAT 59.348 34.615 0.00 0.00 0.00 1.82
4992 7367 7.818930 GTGGCTTGATTTGATTGGAAGAAAATA 59.181 33.333 0.00 0.00 0.00 1.40
4993 7368 8.373981 TGGCTTGATTTGATTGGAAGAAAATAA 58.626 29.630 0.00 0.00 0.00 1.40
4994 7369 8.876790 GGCTTGATTTGATTGGAAGAAAATAAG 58.123 33.333 0.00 0.00 0.00 1.73
4995 7370 8.876790 GCTTGATTTGATTGGAAGAAAATAAGG 58.123 33.333 0.00 0.00 0.00 2.69
4996 7371 8.776376 TTGATTTGATTGGAAGAAAATAAGGC 57.224 30.769 0.00 0.00 0.00 4.35
4997 7372 7.330262 TGATTTGATTGGAAGAAAATAAGGCC 58.670 34.615 0.00 0.00 0.00 5.19
4998 7373 5.675684 TTGATTGGAAGAAAATAAGGCCC 57.324 39.130 0.00 0.00 0.00 5.80
4999 7374 3.699038 TGATTGGAAGAAAATAAGGCCCG 59.301 43.478 0.00 0.00 0.00 6.13
5000 7375 2.137810 TGGAAGAAAATAAGGCCCGG 57.862 50.000 0.00 0.00 0.00 5.73
5001 7376 0.744874 GGAAGAAAATAAGGCCCGGC 59.255 55.000 0.00 0.00 0.00 6.13
5015 7390 3.646715 CGGCCCCACCTCCTGAAA 61.647 66.667 0.00 0.00 35.61 2.69
5016 7391 2.851045 GGCCCCACCTCCTGAAAA 59.149 61.111 0.00 0.00 34.51 2.29
5017 7392 1.388133 GGCCCCACCTCCTGAAAAT 59.612 57.895 0.00 0.00 34.51 1.82
5018 7393 0.684479 GGCCCCACCTCCTGAAAATC 60.684 60.000 0.00 0.00 34.51 2.17
5019 7394 0.039618 GCCCCACCTCCTGAAAATCA 59.960 55.000 0.00 0.00 0.00 2.57
5020 7395 1.957113 GCCCCACCTCCTGAAAATCAG 60.957 57.143 0.32 0.32 43.91 2.90
5030 7405 3.939740 CTGAAAATCAGGGGGAGATGA 57.060 47.619 0.00 0.00 40.71 2.92
5031 7406 4.450305 CTGAAAATCAGGGGGAGATGAT 57.550 45.455 0.00 0.00 40.71 2.45
5032 7407 4.801164 CTGAAAATCAGGGGGAGATGATT 58.199 43.478 0.00 0.00 45.67 2.57
5033 7408 5.945310 CTGAAAATCAGGGGGAGATGATTA 58.055 41.667 1.20 0.00 43.56 1.75
5034 7409 5.945310 TGAAAATCAGGGGGAGATGATTAG 58.055 41.667 1.20 0.00 43.56 1.73
5035 7410 5.671735 TGAAAATCAGGGGGAGATGATTAGA 59.328 40.000 1.20 0.00 43.56 2.10
5036 7411 6.333702 TGAAAATCAGGGGGAGATGATTAGAT 59.666 38.462 1.20 0.00 43.56 1.98
5037 7412 6.793518 AAATCAGGGGGAGATGATTAGATT 57.206 37.500 1.20 0.00 43.56 2.40
5038 7413 7.895144 AAATCAGGGGGAGATGATTAGATTA 57.105 36.000 1.20 0.00 43.56 1.75
5039 7414 7.507797 AATCAGGGGGAGATGATTAGATTAG 57.492 40.000 0.00 0.00 42.77 1.73
5040 7415 6.233045 TCAGGGGGAGATGATTAGATTAGA 57.767 41.667 0.00 0.00 0.00 2.10
5041 7416 6.634041 TCAGGGGGAGATGATTAGATTAGAA 58.366 40.000 0.00 0.00 0.00 2.10
5042 7417 7.082316 TCAGGGGGAGATGATTAGATTAGAAA 58.918 38.462 0.00 0.00 0.00 2.52
5043 7418 7.572485 TCAGGGGGAGATGATTAGATTAGAAAA 59.428 37.037 0.00 0.00 0.00 2.29
5044 7419 7.882271 CAGGGGGAGATGATTAGATTAGAAAAG 59.118 40.741 0.00 0.00 0.00 2.27
5045 7420 7.796637 AGGGGGAGATGATTAGATTAGAAAAGA 59.203 37.037 0.00 0.00 0.00 2.52
5046 7421 8.440771 GGGGGAGATGATTAGATTAGAAAAGAA 58.559 37.037 0.00 0.00 0.00 2.52
5047 7422 9.853177 GGGGAGATGATTAGATTAGAAAAGAAA 57.147 33.333 0.00 0.00 0.00 2.52
5062 7437 9.869757 TTAGAAAAGAAAAAGGGAAAAGAACAG 57.130 29.630 0.00 0.00 0.00 3.16
5063 7438 6.818644 AGAAAAGAAAAAGGGAAAAGAACAGC 59.181 34.615 0.00 0.00 0.00 4.40
5064 7439 4.672587 AGAAAAAGGGAAAAGAACAGCC 57.327 40.909 0.00 0.00 0.00 4.85
5065 7440 3.068165 AGAAAAAGGGAAAAGAACAGCCG 59.932 43.478 0.00 0.00 0.00 5.52
5066 7441 2.067365 AAAGGGAAAAGAACAGCCGT 57.933 45.000 0.00 0.00 0.00 5.68
5067 7442 2.943036 AAGGGAAAAGAACAGCCGTA 57.057 45.000 0.00 0.00 0.00 4.02
5068 7443 2.474410 AGGGAAAAGAACAGCCGTAG 57.526 50.000 0.00 0.00 0.00 3.51
5082 7457 3.669354 CGTAGGATGAAGTGGGAGC 57.331 57.895 0.00 0.00 0.00 4.70
5083 7458 0.824109 CGTAGGATGAAGTGGGAGCA 59.176 55.000 0.00 0.00 0.00 4.26
5084 7459 1.471676 CGTAGGATGAAGTGGGAGCAC 60.472 57.143 0.00 0.00 0.00 4.40
5085 7460 0.824109 TAGGATGAAGTGGGAGCACG 59.176 55.000 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.433436 GCCTAGTGTCGTCCCATTTTT 58.567 47.619 0.00 0.00 0.00 1.94
19 20 1.674817 CGCCTAGTGTCGTCCCATTTT 60.675 52.381 0.00 0.00 0.00 1.82
20 21 0.108329 CGCCTAGTGTCGTCCCATTT 60.108 55.000 0.00 0.00 0.00 2.32
21 22 1.255667 ACGCCTAGTGTCGTCCCATT 61.256 55.000 0.00 0.00 33.09 3.16
22 23 1.664321 GACGCCTAGTGTCGTCCCAT 61.664 60.000 14.62 0.00 46.50 4.00
23 24 2.282674 ACGCCTAGTGTCGTCCCA 60.283 61.111 0.00 0.00 33.09 4.37
24 25 2.488820 GACGCCTAGTGTCGTCCC 59.511 66.667 14.62 0.00 46.50 4.46
47 48 3.971245 AGACCTCTTCCAGTGTTCATC 57.029 47.619 0.00 0.00 0.00 2.92
48 49 3.515901 GGTAGACCTCTTCCAGTGTTCAT 59.484 47.826 0.00 0.00 34.06 2.57
53 54 0.173708 GCGGTAGACCTCTTCCAGTG 59.826 60.000 0.00 0.00 33.55 3.66
68 69 2.291043 AAATGGTCGAGGAGGCGGT 61.291 57.895 0.00 0.00 0.00 5.68
71 72 2.768834 GACAAATGGTCGAGGAGGC 58.231 57.895 0.00 0.00 36.65 4.70
101 102 0.681243 GCTGAGGGAATCCAACACCC 60.681 60.000 0.09 0.00 43.55 4.61
103 104 1.168714 GTGCTGAGGGAATCCAACAC 58.831 55.000 0.09 0.00 34.83 3.32
104 105 0.038166 GGTGCTGAGGGAATCCAACA 59.962 55.000 0.09 0.00 34.83 3.33
122 123 1.000739 ATGAGGTGGGGCATTGTGG 59.999 57.895 0.00 0.00 0.00 4.17
123 124 1.039233 GGATGAGGTGGGGCATTGTG 61.039 60.000 0.00 0.00 0.00 3.33
124 125 1.217057 AGGATGAGGTGGGGCATTGT 61.217 55.000 0.00 0.00 0.00 2.71
131 132 1.112315 CGAGAGGAGGATGAGGTGGG 61.112 65.000 0.00 0.00 0.00 4.61
163 164 1.523758 GAACGGAACAAGGCTCATGT 58.476 50.000 0.00 0.00 0.00 3.21
180 181 2.940410 GTTCAAGTGACAAGTTCCCGAA 59.060 45.455 0.00 0.00 0.00 4.30
182 183 1.602377 GGTTCAAGTGACAAGTTCCCG 59.398 52.381 0.00 0.00 0.00 5.14
187 188 4.016444 ACAACATGGTTCAAGTGACAAGT 58.984 39.130 0.00 0.00 0.00 3.16
230 231 0.108041 GGGGGATGTTGCAATGCTTG 60.108 55.000 6.82 0.00 0.00 4.01
232 233 0.325860 ATGGGGGATGTTGCAATGCT 60.326 50.000 6.82 0.00 0.00 3.79
233 234 0.542805 AATGGGGGATGTTGCAATGC 59.457 50.000 0.59 0.00 0.00 3.56
255 256 0.745845 ATGGGAGATGTTGCGACTGC 60.746 55.000 5.50 0.00 43.20 4.40
256 257 1.012086 CATGGGAGATGTTGCGACTG 58.988 55.000 5.50 0.00 0.00 3.51
315 316 3.531538 TGGGAGATGTTGCGACTAAATC 58.468 45.455 5.50 0.18 0.00 2.17
347 351 3.385384 TGGTGCGAGGGCTCTCTG 61.385 66.667 12.81 6.55 40.82 3.35
386 390 2.799176 CAAGGGATGCTACAAGGCC 58.201 57.895 0.00 0.00 0.00 5.19
401 405 2.570169 CGACGGTAATGTTGTTGCAAG 58.430 47.619 0.00 0.00 0.00 4.01
420 424 1.574428 CAGGAACAGTTTTCCGGCG 59.426 57.895 0.00 0.00 43.23 6.46
432 436 1.517242 CTCCAAGTCAGTGCAGGAAC 58.483 55.000 0.00 0.00 0.00 3.62
458 462 3.566210 AAGGGGGTCACCGGTGTG 61.566 66.667 32.74 10.38 44.18 3.82
459 463 3.566210 CAAGGGGGTCACCGGTGT 61.566 66.667 32.74 11.09 41.60 4.16
463 467 2.983592 GTTGCAAGGGGGTCACCG 60.984 66.667 0.00 0.00 41.60 4.94
464 468 1.903404 CTGTTGCAAGGGGGTCACC 60.903 63.158 0.00 0.00 39.11 4.02
465 469 1.152756 ACTGTTGCAAGGGGGTCAC 60.153 57.895 0.00 0.00 0.00 3.67
466 470 1.152777 CACTGTTGCAAGGGGGTCA 60.153 57.895 0.00 0.00 0.00 4.02
468 472 1.152756 GACACTGTTGCAAGGGGGT 60.153 57.895 0.00 2.21 0.00 4.95
469 473 1.903404 GGACACTGTTGCAAGGGGG 60.903 63.158 0.00 0.00 0.00 5.40
481 485 0.617820 ACGGGCTAATGAGGGACACT 60.618 55.000 0.00 0.00 0.00 3.55
500 504 2.507854 GGCGGCATCCTACCTGCTA 61.508 63.158 3.07 0.00 39.60 3.49
504 508 2.911143 CAAGGCGGCATCCTACCT 59.089 61.111 13.08 0.00 34.82 3.08
522 526 3.939837 ATGACCAGCGTCGCCACTG 62.940 63.158 14.86 5.74 42.37 3.66
539 543 2.097038 GCTGAGCTCGACGTTGCAT 61.097 57.895 9.64 3.85 0.00 3.96
548 552 4.838486 GGACGACCGCTGAGCTCG 62.838 72.222 13.53 13.53 0.00 5.03
550 554 3.444805 GAGGACGACCGCTGAGCT 61.445 66.667 1.78 0.00 41.83 4.09
570 588 1.230635 ATCACAAGGCGACACTGTGC 61.231 55.000 16.51 0.00 42.79 4.57
581 599 2.202932 CCTCGCCGGATCACAAGG 60.203 66.667 5.05 0.00 33.16 3.61
582 600 2.892425 GCCTCGCCGGATCACAAG 60.892 66.667 5.05 0.00 33.16 3.16
592 610 2.125147 TGCTACACATGCCTCGCC 60.125 61.111 0.00 0.00 0.00 5.54
621 639 6.539826 TGGTGAACATATTATCACAAGCTGAG 59.460 38.462 15.84 0.00 46.07 3.35
639 657 4.487714 TCCCAATACTCTCATGGTGAAC 57.512 45.455 0.00 0.00 32.13 3.18
644 662 2.107031 TGCCATCCCAATACTCTCATGG 59.893 50.000 0.00 0.00 34.94 3.66
682 700 1.078848 CCCTCTCTCTTTGGCACCG 60.079 63.158 0.00 0.00 0.00 4.94
689 707 2.827755 GTCTCCTTCCCCTCTCTCTTT 58.172 52.381 0.00 0.00 0.00 2.52
691 709 0.257616 CGTCTCCTTCCCCTCTCTCT 59.742 60.000 0.00 0.00 0.00 3.10
692 710 0.256464 TCGTCTCCTTCCCCTCTCTC 59.744 60.000 0.00 0.00 0.00 3.20
693 711 0.257616 CTCGTCTCCTTCCCCTCTCT 59.742 60.000 0.00 0.00 0.00 3.10
694 712 0.256464 TCTCGTCTCCTTCCCCTCTC 59.744 60.000 0.00 0.00 0.00 3.20
695 713 0.033894 GTCTCGTCTCCTTCCCCTCT 60.034 60.000 0.00 0.00 0.00 3.69
696 714 1.378124 CGTCTCGTCTCCTTCCCCTC 61.378 65.000 0.00 0.00 0.00 4.30
697 715 1.378778 CGTCTCGTCTCCTTCCCCT 60.379 63.158 0.00 0.00 0.00 4.79
698 716 1.378250 TCGTCTCGTCTCCTTCCCC 60.378 63.158 0.00 0.00 0.00 4.81
704 722 2.031516 TGGTCGTCGTCTCGTCTCC 61.032 63.158 0.00 0.00 0.00 3.71
708 726 2.592574 TGGTGGTCGTCGTCTCGT 60.593 61.111 0.00 0.00 0.00 4.18
734 752 4.735822 CGTCTCATTCGTTTCTATCCAGTC 59.264 45.833 0.00 0.00 0.00 3.51
785 803 2.358737 GGAGGGGCAAGTCACACG 60.359 66.667 0.00 0.00 0.00 4.49
802 820 2.135933 GAACGGGTGACTTGAAGACAG 58.864 52.381 0.00 0.00 0.00 3.51
805 823 1.034356 TCGAACGGGTGACTTGAAGA 58.966 50.000 0.00 0.00 0.00 2.87
931 2412 1.226717 GATGGAGTCGTCGGTGAGC 60.227 63.158 0.00 0.00 0.00 4.26
938 2419 3.539842 GGGGGAGATGGAGTCGTC 58.460 66.667 0.00 0.00 0.00 4.20
952 2433 1.590259 CGCGTTTTGTTTGTGGGGG 60.590 57.895 0.00 0.00 0.00 5.40
966 2447 2.397549 GTGTTAAGAGTTGGTACGCGT 58.602 47.619 19.17 19.17 0.00 6.01
1059 2553 1.161843 GAAAGGGGCACGAAATCGAA 58.838 50.000 10.16 0.00 43.02 3.71
1087 2581 3.593318 GGAGAAGGTCTCGCTCGT 58.407 61.111 0.00 0.00 44.28 4.18
1095 2589 2.001838 GGGGAAGGGGGAGAAGGTC 61.002 68.421 0.00 0.00 0.00 3.85
1096 2590 2.075278 AAGGGGAAGGGGGAGAAGGT 62.075 60.000 0.00 0.00 0.00 3.50
1169 2663 2.125106 GATCCGGGCAAACTCGCT 60.125 61.111 0.00 0.00 0.00 4.93
1170 2664 3.202706 GGATCCGGGCAAACTCGC 61.203 66.667 0.00 0.00 0.00 5.03
1336 2830 4.862574 CGAACATAACAACGAATCAGAGGA 59.137 41.667 0.00 0.00 0.00 3.71
1348 2842 7.642194 GTCAAATTCTGTCAACGAACATAACAA 59.358 33.333 0.00 0.00 0.00 2.83
1353 2847 7.672983 ATAGTCAAATTCTGTCAACGAACAT 57.327 32.000 0.00 0.00 0.00 2.71
1365 2859 5.297776 CCTCGCCAATCAATAGTCAAATTCT 59.702 40.000 0.00 0.00 0.00 2.40
1387 2881 4.806640 AACGCAATTGATCCAATTTCCT 57.193 36.364 10.34 0.00 40.60 3.36
1417 2911 1.299165 CGAATACTCAGACCGGCCG 60.299 63.158 21.04 21.04 0.00 6.13
1437 2931 3.157881 TGCGTCCCATAATCCACAAAAA 58.842 40.909 0.00 0.00 0.00 1.94
1440 2934 2.026729 TCTTGCGTCCCATAATCCACAA 60.027 45.455 0.00 0.00 0.00 3.33
1453 2947 1.061485 GAAGGAACGACTCTTGCGTC 58.939 55.000 0.00 0.00 41.75 5.19
1462 2956 2.728535 GCGTCTACAGAGAAGGAACGAC 60.729 54.545 0.00 0.00 32.33 4.34
1485 2979 4.435137 TCCCAGGATCTACTTCAGGAAAA 58.565 43.478 0.00 0.00 0.00 2.29
1586 3091 9.320295 AGAATAATTTGGTTTCCTTTACCATCA 57.680 29.630 0.00 0.00 44.70 3.07
1595 3108 8.650490 ACATTGACAAGAATAATTTGGTTTCCT 58.350 29.630 0.00 0.00 0.00 3.36
1652 3165 2.982488 AGAAAGAAAGGCTCTTCCCTGA 59.018 45.455 0.00 0.00 44.00 3.86
1852 3366 3.120199 CCTAGCACAACGGACTTGAAATG 60.120 47.826 0.00 0.00 33.59 2.32
1889 3404 6.199937 ACATTCAAGTCCAGAAACATATGC 57.800 37.500 1.58 0.00 0.00 3.14
1892 3407 8.573035 GGTTTTACATTCAAGTCCAGAAACATA 58.427 33.333 0.00 0.00 0.00 2.29
1906 3421 9.667107 CTTAGGATCAAGTAGGTTTTACATTCA 57.333 33.333 0.00 0.00 0.00 2.57
1936 3451 4.260985 TGGTGTATGACAATGGCAGTTAG 58.739 43.478 0.00 0.00 0.00 2.34
1982 3508 2.035066 ACATGTTTGCCTGCTGTTTCTC 59.965 45.455 0.00 0.00 0.00 2.87
1990 3516 0.249573 AAGCACACATGTTTGCCTGC 60.250 50.000 28.61 14.96 39.75 4.85
2080 3606 3.893200 TCCGTCCCACAATATAAGATCGT 59.107 43.478 0.00 0.00 0.00 3.73
2082 3608 4.322801 CCCTCCGTCCCACAATATAAGATC 60.323 50.000 0.00 0.00 0.00 2.75
2107 3633 6.696411 AGGCTAGCTCTCATGAAATACATAC 58.304 40.000 15.72 0.00 37.46 2.39
2187 3715 9.057089 GCCTCTTATTAAGTACAGTAATGCATT 57.943 33.333 17.56 17.56 0.00 3.56
2301 3831 5.212194 CCCATACGTGAAAAGTGAAAACAG 58.788 41.667 0.00 0.00 0.00 3.16
2310 3840 1.529226 TGCCACCCATACGTGAAAAG 58.471 50.000 0.00 0.00 35.68 2.27
2608 4533 2.545952 ATACTTCAGGTAAGCATCGGCG 60.546 50.000 0.00 0.00 38.93 6.46
2948 4981 3.239449 ACACCCAGTGATGACAGAACTA 58.761 45.455 0.96 0.00 36.96 2.24
2965 4998 0.243636 GCACAATGCCTGGTTACACC 59.756 55.000 0.00 0.00 37.42 4.16
2969 5002 2.512692 ATCAGCACAATGCCTGGTTA 57.487 45.000 0.00 0.00 46.52 2.85
2971 5004 2.304092 CATATCAGCACAATGCCTGGT 58.696 47.619 0.00 0.00 46.52 4.00
2976 5009 1.679680 ACAGCCATATCAGCACAATGC 59.320 47.619 0.00 0.00 45.46 3.56
2986 5019 7.263100 TGAACAATCATACAACAGCCATATC 57.737 36.000 0.00 0.00 0.00 1.63
2995 5028 6.363357 GCAAAAGACCTGAACAATCATACAAC 59.637 38.462 0.00 0.00 34.37 3.32
3096 5129 3.055385 AGGCGAACTCCTTTAGCACATAA 60.055 43.478 0.00 0.00 37.55 1.90
3344 5377 1.379977 GGCAAAGGGGAAGGTAGGC 60.380 63.158 0.00 0.00 0.00 3.93
3658 5691 3.423154 CTTTGCCACGGCTCGGTC 61.423 66.667 9.92 0.00 42.51 4.79
3797 5830 9.259832 AGGCATATAACATAGACATACTCATGA 57.740 33.333 0.00 0.00 35.96 3.07
3804 5837 8.542926 AGCAATCAGGCATATAACATAGACATA 58.457 33.333 0.00 0.00 35.83 2.29
3805 5838 7.336176 CAGCAATCAGGCATATAACATAGACAT 59.664 37.037 0.00 0.00 35.83 3.06
3806 5839 6.652062 CAGCAATCAGGCATATAACATAGACA 59.348 38.462 0.00 0.00 35.83 3.41
3807 5840 6.652481 ACAGCAATCAGGCATATAACATAGAC 59.348 38.462 0.00 0.00 35.83 2.59
3808 5841 6.652062 CACAGCAATCAGGCATATAACATAGA 59.348 38.462 0.00 0.00 35.83 1.98
3809 5842 6.429078 ACACAGCAATCAGGCATATAACATAG 59.571 38.462 0.00 0.00 35.83 2.23
3841 5874 7.921786 ACAATCAAATCGAGTAAATGAGGAA 57.078 32.000 0.00 0.00 0.00 3.36
3954 5987 5.347907 GGAGTACATTTAGTTTCTGGTGTCG 59.652 44.000 0.00 0.00 0.00 4.35
3975 6008 3.127030 GGGTCTCGCAATTTAGTTTGGAG 59.873 47.826 0.00 0.00 0.00 3.86
4080 6114 9.832445 ACAGAAATAGACCACGTATGAATTTAT 57.168 29.630 0.00 0.00 0.00 1.40
4081 6115 9.093970 CACAGAAATAGACCACGTATGAATTTA 57.906 33.333 0.00 0.00 0.00 1.40
4082 6116 7.822334 TCACAGAAATAGACCACGTATGAATTT 59.178 33.333 0.00 0.00 0.00 1.82
4083 6117 7.327975 TCACAGAAATAGACCACGTATGAATT 58.672 34.615 0.00 0.00 0.00 2.17
4084 6118 6.873997 TCACAGAAATAGACCACGTATGAAT 58.126 36.000 0.00 0.00 0.00 2.57
4085 6119 6.275494 TCACAGAAATAGACCACGTATGAA 57.725 37.500 0.00 0.00 0.00 2.57
4086 6120 5.907866 TCACAGAAATAGACCACGTATGA 57.092 39.130 0.00 0.00 0.00 2.15
4094 6128 7.169982 GTGCATAGTACATCACAGAAATAGACC 59.830 40.741 0.00 0.00 0.00 3.85
4246 6292 9.516314 AAGAGTATGTAAAGCTTTGAAAAACAC 57.484 29.630 22.02 10.23 0.00 3.32
4254 6300 9.683069 ACAATCAAAAGAGTATGTAAAGCTTTG 57.317 29.630 22.02 0.65 0.00 2.77
4376 6584 3.061429 CGCAAGCAAGAGTAGCTAAGTTC 59.939 47.826 0.00 0.00 42.53 3.01
4528 6736 0.174617 GAGGAGGAAGTGGAGAAGCG 59.825 60.000 0.00 0.00 0.00 4.68
4551 6759 2.080286 AAGCGACGAATGCTACAAGT 57.920 45.000 0.00 0.00 43.14 3.16
4567 6775 4.005650 TCAGACTTGGACATGATCAAAGC 58.994 43.478 0.00 0.33 41.63 3.51
4619 6977 0.185901 AGGCAAGGAAGAAGGTTGCA 59.814 50.000 8.41 0.00 46.86 4.08
4622 6980 3.225940 CAAGAAGGCAAGGAAGAAGGTT 58.774 45.455 0.00 0.00 0.00 3.50
4668 7026 1.040893 ATCCATCAGACACCGCCGTA 61.041 55.000 0.00 0.00 0.00 4.02
4670 7028 0.104120 TAATCCATCAGACACCGCCG 59.896 55.000 0.00 0.00 0.00 6.46
4675 7033 3.711704 TCCTTCCCTAATCCATCAGACAC 59.288 47.826 0.00 0.00 0.00 3.67
4730 7088 8.398665 GGTCTCCAACACTATAAAAATCATGTC 58.601 37.037 0.00 0.00 0.00 3.06
4746 7105 1.965930 GCACATGCGGTCTCCAACA 60.966 57.895 0.00 0.00 0.00 3.33
4811 7178 1.155424 TCGTGCGGTTGTTTCTGACC 61.155 55.000 0.00 0.00 0.00 4.02
4828 7195 2.221749 CACACTGTGGTTTCTGATGTCG 59.778 50.000 13.09 0.00 0.00 4.35
4864 7239 2.737376 GAGGAACCACGGTCACGC 60.737 66.667 0.00 0.00 46.04 5.34
4867 7242 0.036164 CCAATGAGGAACCACGGTCA 59.964 55.000 0.00 0.00 41.22 4.02
4910 7285 1.228894 AGGCAAGTCTCGTCCTCCA 60.229 57.895 0.00 0.00 0.00 3.86
4913 7288 1.882989 GAGCAGGCAAGTCTCGTCCT 61.883 60.000 0.00 0.00 0.00 3.85
4914 7289 1.446966 GAGCAGGCAAGTCTCGTCC 60.447 63.158 0.00 0.00 0.00 4.79
4915 7290 1.446966 GGAGCAGGCAAGTCTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
4916 7291 2.659610 GGAGCAGGCAAGTCTCGT 59.340 61.111 0.00 0.00 0.00 4.18
4917 7292 2.125350 GGGAGCAGGCAAGTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
4918 7293 0.392327 GAAGGGAGCAGGCAAGTCTC 60.392 60.000 0.00 0.00 0.00 3.36
4919 7294 1.682257 GAAGGGAGCAGGCAAGTCT 59.318 57.895 0.00 0.00 0.00 3.24
4920 7295 1.377856 GGAAGGGAGCAGGCAAGTC 60.378 63.158 0.00 0.00 0.00 3.01
4921 7296 2.759795 GGAAGGGAGCAGGCAAGT 59.240 61.111 0.00 0.00 0.00 3.16
4922 7297 2.044551 GGGAAGGGAGCAGGCAAG 60.045 66.667 0.00 0.00 0.00 4.01
4923 7298 2.240918 ATGGGAAGGGAGCAGGCAA 61.241 57.895 0.00 0.00 0.00 4.52
4924 7299 2.614969 ATGGGAAGGGAGCAGGCA 60.615 61.111 0.00 0.00 0.00 4.75
4925 7300 2.123982 CATGGGAAGGGAGCAGGC 60.124 66.667 0.00 0.00 0.00 4.85
4926 7301 2.123982 GCATGGGAAGGGAGCAGG 60.124 66.667 0.00 0.00 0.00 4.85
4927 7302 1.153005 GAGCATGGGAAGGGAGCAG 60.153 63.158 0.00 0.00 0.00 4.24
4928 7303 2.683465 GGAGCATGGGAAGGGAGCA 61.683 63.158 0.00 0.00 0.00 4.26
4929 7304 2.194326 GGAGCATGGGAAGGGAGC 59.806 66.667 0.00 0.00 0.00 4.70
4930 7305 1.358830 ATGGGAGCATGGGAAGGGAG 61.359 60.000 0.00 0.00 0.00 4.30
4931 7306 1.309013 ATGGGAGCATGGGAAGGGA 60.309 57.895 0.00 0.00 0.00 4.20
4932 7307 1.152368 GATGGGAGCATGGGAAGGG 59.848 63.158 0.00 0.00 0.00 3.95
4933 7308 1.152368 GGATGGGAGCATGGGAAGG 59.848 63.158 0.00 0.00 0.00 3.46
4934 7309 1.228063 CGGATGGGAGCATGGGAAG 60.228 63.158 0.00 0.00 0.00 3.46
4935 7310 2.000701 ACGGATGGGAGCATGGGAA 61.001 57.895 0.00 0.00 0.00 3.97
4936 7311 2.366837 ACGGATGGGAGCATGGGA 60.367 61.111 0.00 0.00 0.00 4.37
4937 7312 2.203252 CACGGATGGGAGCATGGG 60.203 66.667 0.00 0.00 0.00 4.00
4938 7313 2.903855 GCACGGATGGGAGCATGG 60.904 66.667 0.00 0.00 0.00 3.66
4939 7314 1.890979 GAGCACGGATGGGAGCATG 60.891 63.158 0.00 0.00 0.00 4.06
4940 7315 2.507944 GAGCACGGATGGGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
4941 7316 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
4942 7317 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
4943 7318 4.227134 CGGGAGCACGGATGGGAG 62.227 72.222 0.00 0.00 0.00 4.30
4955 7330 2.173669 CAAGCCACGTATGCGGGAG 61.174 63.158 7.15 0.00 45.97 4.30
4956 7331 1.966901 ATCAAGCCACGTATGCGGGA 61.967 55.000 7.15 6.11 45.97 5.14
4957 7332 1.095228 AATCAAGCCACGTATGCGGG 61.095 55.000 8.39 2.48 43.45 6.13
4958 7333 0.732571 AAATCAAGCCACGTATGCGG 59.267 50.000 8.39 0.00 43.45 5.69
4959 7334 1.396648 TCAAATCAAGCCACGTATGCG 59.603 47.619 0.19 0.19 44.93 4.73
4960 7335 3.698029 ATCAAATCAAGCCACGTATGC 57.302 42.857 1.17 1.17 0.00 3.14
4961 7336 4.096231 TCCAATCAAATCAAGCCACGTATG 59.904 41.667 0.00 0.00 0.00 2.39
4962 7337 4.269183 TCCAATCAAATCAAGCCACGTAT 58.731 39.130 0.00 0.00 0.00 3.06
4963 7338 3.680490 TCCAATCAAATCAAGCCACGTA 58.320 40.909 0.00 0.00 0.00 3.57
4964 7339 2.513753 TCCAATCAAATCAAGCCACGT 58.486 42.857 0.00 0.00 0.00 4.49
4965 7340 3.191162 TCTTCCAATCAAATCAAGCCACG 59.809 43.478 0.00 0.00 0.00 4.94
4966 7341 4.789012 TCTTCCAATCAAATCAAGCCAC 57.211 40.909 0.00 0.00 0.00 5.01
4967 7342 5.804944 TTTCTTCCAATCAAATCAAGCCA 57.195 34.783 0.00 0.00 0.00 4.75
4968 7343 8.776376 TTATTTTCTTCCAATCAAATCAAGCC 57.224 30.769 0.00 0.00 0.00 4.35
4969 7344 8.876790 CCTTATTTTCTTCCAATCAAATCAAGC 58.123 33.333 0.00 0.00 0.00 4.01
4970 7345 8.876790 GCCTTATTTTCTTCCAATCAAATCAAG 58.123 33.333 0.00 0.00 0.00 3.02
4971 7346 7.823799 GGCCTTATTTTCTTCCAATCAAATCAA 59.176 33.333 0.00 0.00 0.00 2.57
4972 7347 7.330262 GGCCTTATTTTCTTCCAATCAAATCA 58.670 34.615 0.00 0.00 0.00 2.57
4973 7348 6.763135 GGGCCTTATTTTCTTCCAATCAAATC 59.237 38.462 0.84 0.00 0.00 2.17
4974 7349 6.630188 CGGGCCTTATTTTCTTCCAATCAAAT 60.630 38.462 0.84 0.00 0.00 2.32
4975 7350 5.337169 CGGGCCTTATTTTCTTCCAATCAAA 60.337 40.000 0.84 0.00 0.00 2.69
4976 7351 4.159506 CGGGCCTTATTTTCTTCCAATCAA 59.840 41.667 0.84 0.00 0.00 2.57
4977 7352 3.699038 CGGGCCTTATTTTCTTCCAATCA 59.301 43.478 0.84 0.00 0.00 2.57
4978 7353 3.068165 CCGGGCCTTATTTTCTTCCAATC 59.932 47.826 0.84 0.00 0.00 2.67
4979 7354 3.031013 CCGGGCCTTATTTTCTTCCAAT 58.969 45.455 0.84 0.00 0.00 3.16
4980 7355 2.452505 CCGGGCCTTATTTTCTTCCAA 58.547 47.619 0.84 0.00 0.00 3.53
4981 7356 1.958069 GCCGGGCCTTATTTTCTTCCA 60.958 52.381 8.12 0.00 0.00 3.53
4982 7357 0.744874 GCCGGGCCTTATTTTCTTCC 59.255 55.000 8.12 0.00 0.00 3.46
4983 7358 0.744874 GGCCGGGCCTTATTTTCTTC 59.255 55.000 30.86 0.00 46.69 2.87
4984 7359 2.896278 GGCCGGGCCTTATTTTCTT 58.104 52.632 30.86 0.00 46.69 2.52
4985 7360 4.678423 GGCCGGGCCTTATTTTCT 57.322 55.556 30.86 0.00 46.69 2.52
4998 7373 2.499303 ATTTTCAGGAGGTGGGGCCG 62.499 60.000 0.00 0.00 43.70 6.13
4999 7374 0.684479 GATTTTCAGGAGGTGGGGCC 60.684 60.000 0.00 0.00 37.58 5.80
5000 7375 0.039618 TGATTTTCAGGAGGTGGGGC 59.960 55.000 0.00 0.00 0.00 5.80
5001 7376 2.134789 CTGATTTTCAGGAGGTGGGG 57.865 55.000 0.00 0.00 40.71 4.96
5010 7385 3.939740 TCATCTCCCCCTGATTTTCAG 57.060 47.619 0.00 0.00 43.91 3.02
5011 7386 4.886755 AATCATCTCCCCCTGATTTTCA 57.113 40.909 0.00 0.00 38.60 2.69
5012 7387 6.192970 TCTAATCATCTCCCCCTGATTTTC 57.807 41.667 3.40 0.00 41.22 2.29
5013 7388 6.793518 ATCTAATCATCTCCCCCTGATTTT 57.206 37.500 3.40 0.00 41.22 1.82
5014 7389 6.793518 AATCTAATCATCTCCCCCTGATTT 57.206 37.500 3.40 0.00 41.22 2.17
5015 7390 7.259391 TCTAATCTAATCATCTCCCCCTGATT 58.741 38.462 3.57 3.57 42.92 2.57
5016 7391 6.820205 TCTAATCTAATCATCTCCCCCTGAT 58.180 40.000 0.00 0.00 33.59 2.90
5017 7392 6.233045 TCTAATCTAATCATCTCCCCCTGA 57.767 41.667 0.00 0.00 0.00 3.86
5018 7393 6.942163 TTCTAATCTAATCATCTCCCCCTG 57.058 41.667 0.00 0.00 0.00 4.45
5019 7394 7.796637 TCTTTTCTAATCTAATCATCTCCCCCT 59.203 37.037 0.00 0.00 0.00 4.79
5020 7395 7.978925 TCTTTTCTAATCTAATCATCTCCCCC 58.021 38.462 0.00 0.00 0.00 5.40
5021 7396 9.853177 TTTCTTTTCTAATCTAATCATCTCCCC 57.147 33.333 0.00 0.00 0.00 4.81
5036 7411 9.869757 CTGTTCTTTTCCCTTTTTCTTTTCTAA 57.130 29.630 0.00 0.00 0.00 2.10
5037 7412 7.979537 GCTGTTCTTTTCCCTTTTTCTTTTCTA 59.020 33.333 0.00 0.00 0.00 2.10
5038 7413 6.818644 GCTGTTCTTTTCCCTTTTTCTTTTCT 59.181 34.615 0.00 0.00 0.00 2.52
5039 7414 6.037172 GGCTGTTCTTTTCCCTTTTTCTTTTC 59.963 38.462 0.00 0.00 0.00 2.29
5040 7415 5.880332 GGCTGTTCTTTTCCCTTTTTCTTTT 59.120 36.000 0.00 0.00 0.00 2.27
5041 7416 5.428253 GGCTGTTCTTTTCCCTTTTTCTTT 58.572 37.500 0.00 0.00 0.00 2.52
5042 7417 4.441495 CGGCTGTTCTTTTCCCTTTTTCTT 60.441 41.667 0.00 0.00 0.00 2.52
5043 7418 3.068165 CGGCTGTTCTTTTCCCTTTTTCT 59.932 43.478 0.00 0.00 0.00 2.52
5044 7419 3.181479 ACGGCTGTTCTTTTCCCTTTTTC 60.181 43.478 0.00 0.00 0.00 2.29
5045 7420 2.764010 ACGGCTGTTCTTTTCCCTTTTT 59.236 40.909 0.00 0.00 0.00 1.94
5046 7421 2.384828 ACGGCTGTTCTTTTCCCTTTT 58.615 42.857 0.00 0.00 0.00 2.27
5047 7422 2.067365 ACGGCTGTTCTTTTCCCTTT 57.933 45.000 0.00 0.00 0.00 3.11
5048 7423 2.552373 CCTACGGCTGTTCTTTTCCCTT 60.552 50.000 1.99 0.00 0.00 3.95
5049 7424 1.003233 CCTACGGCTGTTCTTTTCCCT 59.997 52.381 1.99 0.00 0.00 4.20
5050 7425 1.002773 TCCTACGGCTGTTCTTTTCCC 59.997 52.381 1.99 0.00 0.00 3.97
5051 7426 2.467566 TCCTACGGCTGTTCTTTTCC 57.532 50.000 1.99 0.00 0.00 3.13
5052 7427 3.596214 TCATCCTACGGCTGTTCTTTTC 58.404 45.455 1.99 0.00 0.00 2.29
5053 7428 3.695830 TCATCCTACGGCTGTTCTTTT 57.304 42.857 1.99 0.00 0.00 2.27
5054 7429 3.008049 ACTTCATCCTACGGCTGTTCTTT 59.992 43.478 1.99 0.00 0.00 2.52
5055 7430 2.567615 ACTTCATCCTACGGCTGTTCTT 59.432 45.455 1.99 0.00 0.00 2.52
5056 7431 2.093973 CACTTCATCCTACGGCTGTTCT 60.094 50.000 1.99 0.00 0.00 3.01
5057 7432 2.271800 CACTTCATCCTACGGCTGTTC 58.728 52.381 1.99 0.00 0.00 3.18
5058 7433 1.066143 CCACTTCATCCTACGGCTGTT 60.066 52.381 1.99 0.00 0.00 3.16
5059 7434 0.537188 CCACTTCATCCTACGGCTGT 59.463 55.000 2.42 2.42 0.00 4.40
5060 7435 0.179073 CCCACTTCATCCTACGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
5061 7436 0.325296 TCCCACTTCATCCTACGGCT 60.325 55.000 0.00 0.00 0.00 5.52
5062 7437 0.105039 CTCCCACTTCATCCTACGGC 59.895 60.000 0.00 0.00 0.00 5.68
5063 7438 0.105039 GCTCCCACTTCATCCTACGG 59.895 60.000 0.00 0.00 0.00 4.02
5064 7439 0.824109 TGCTCCCACTTCATCCTACG 59.176 55.000 0.00 0.00 0.00 3.51
5065 7440 1.471676 CGTGCTCCCACTTCATCCTAC 60.472 57.143 0.00 0.00 39.86 3.18
5066 7441 0.824109 CGTGCTCCCACTTCATCCTA 59.176 55.000 0.00 0.00 39.86 2.94
5067 7442 1.599047 CGTGCTCCCACTTCATCCT 59.401 57.895 0.00 0.00 39.86 3.24
5068 7443 4.208632 CGTGCTCCCACTTCATCC 57.791 61.111 0.00 0.00 39.86 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.