Multiple sequence alignment - TraesCS2D01G206300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G206300 chr2D 100.000 2408 0 0 2117 4524 159574927 159577334 0.000000e+00 4447.0
1 TraesCS2D01G206300 chr2D 100.000 1781 0 0 1 1781 159572811 159574591 0.000000e+00 3290.0
2 TraesCS2D01G206300 chr2D 95.098 510 7 3 4032 4524 168600055 168600563 0.000000e+00 787.0
3 TraesCS2D01G206300 chr2D 88.428 579 67 0 1045 1623 480181630 480181052 0.000000e+00 699.0
4 TraesCS2D01G206300 chr2D 87.130 575 74 0 1049 1623 480325488 480324914 0.000000e+00 652.0
5 TraesCS2D01G206300 chr2D 87.755 147 18 0 3170 3316 480180550 480180404 6.020000e-39 172.0
6 TraesCS2D01G206300 chr2D 88.000 100 11 1 285 383 459482072 459482171 2.860000e-22 117.0
7 TraesCS2D01G206300 chr2D 83.178 107 16 2 302 407 539450605 539450500 3.730000e-16 97.1
8 TraesCS2D01G206300 chr2A 91.374 1994 86 39 2117 4031 170603715 170605701 0.000000e+00 2651.0
9 TraesCS2D01G206300 chr2A 95.440 1272 46 6 517 1781 170602425 170603691 0.000000e+00 2017.0
10 TraesCS2D01G206300 chr2A 87.392 579 73 0 1045 1623 622748013 622747435 0.000000e+00 665.0
11 TraesCS2D01G206300 chr2A 86.971 591 77 0 1033 1623 622853713 622853123 0.000000e+00 665.0
12 TraesCS2D01G206300 chr2B 92.754 1794 72 24 2269 4031 216709625 216711391 0.000000e+00 2540.0
13 TraesCS2D01G206300 chr2B 91.947 1279 50 17 517 1781 216707982 216709221 0.000000e+00 1742.0
14 TraesCS2D01G206300 chr2B 93.307 508 18 4 4032 4524 357951544 357952050 0.000000e+00 736.0
15 TraesCS2D01G206300 chr2B 87.565 579 72 0 1045 1623 563046400 563045822 0.000000e+00 671.0
16 TraesCS2D01G206300 chr2B 86.632 576 77 0 1048 1623 563184913 563184338 4.940000e-179 638.0
17 TraesCS2D01G206300 chr2B 88.000 150 15 3 2117 2266 216709244 216709390 1.670000e-39 174.0
18 TraesCS2D01G206300 chr2B 82.222 90 15 1 88 176 526381741 526381652 4.850000e-10 76.8
19 TraesCS2D01G206300 chr7D 97.778 495 8 2 4032 4524 90602710 90602217 0.000000e+00 850.0
20 TraesCS2D01G206300 chr1A 94.779 498 22 3 4028 4524 3592389 3592883 0.000000e+00 773.0
21 TraesCS2D01G206300 chr7B 93.529 510 12 6 4032 4524 10956601 10956096 0.000000e+00 739.0
22 TraesCS2D01G206300 chr5B 91.393 488 34 3 4037 4524 579042797 579042318 0.000000e+00 662.0
23 TraesCS2D01G206300 chr5B 93.925 214 10 1 4032 4242 540864881 540865094 2.030000e-83 320.0
24 TraesCS2D01G206300 chr5B 88.636 132 15 0 3173 3304 516538534 516538665 1.300000e-35 161.0
25 TraesCS2D01G206300 chr6A 89.060 521 29 5 4032 4524 101831364 101831884 4.970000e-174 621.0
26 TraesCS2D01G206300 chr6A 89.241 158 14 3 3170 3326 414876527 414876372 1.280000e-45 195.0
27 TraesCS2D01G206300 chr4B 88.605 509 30 10 4032 4524 576198441 576198937 1.080000e-165 593.0
28 TraesCS2D01G206300 chr5D 84.912 570 79 7 1054 1621 128565428 128564864 1.830000e-158 569.0
29 TraesCS2D01G206300 chr5D 89.394 132 14 0 3173 3304 426640141 426640272 2.800000e-37 167.0
30 TraesCS2D01G206300 chr6D 89.404 151 15 1 3170 3319 302039303 302039453 5.970000e-44 189.0
31 TraesCS2D01G206300 chr6B 88.742 151 16 1 3170 3319 467449756 467449906 2.780000e-42 183.0
32 TraesCS2D01G206300 chr6B 77.303 304 42 18 121 411 438956538 438956827 2.180000e-33 154.0
33 TraesCS2D01G206300 chr5A 87.248 149 18 1 3173 3321 540682307 540682454 7.780000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G206300 chr2D 159572811 159577334 4523 False 3868.500000 4447 100.000000 1 4524 2 chr2D.!!$F3 4523
1 TraesCS2D01G206300 chr2D 168600055 168600563 508 False 787.000000 787 95.098000 4032 4524 1 chr2D.!!$F1 492
2 TraesCS2D01G206300 chr2D 480324914 480325488 574 True 652.000000 652 87.130000 1049 1623 1 chr2D.!!$R1 574
3 TraesCS2D01G206300 chr2D 480180404 480181630 1226 True 435.500000 699 88.091500 1045 3316 2 chr2D.!!$R3 2271
4 TraesCS2D01G206300 chr2A 170602425 170605701 3276 False 2334.000000 2651 93.407000 517 4031 2 chr2A.!!$F1 3514
5 TraesCS2D01G206300 chr2A 622747435 622748013 578 True 665.000000 665 87.392000 1045 1623 1 chr2A.!!$R1 578
6 TraesCS2D01G206300 chr2A 622853123 622853713 590 True 665.000000 665 86.971000 1033 1623 1 chr2A.!!$R2 590
7 TraesCS2D01G206300 chr2B 216707982 216711391 3409 False 1485.333333 2540 90.900333 517 4031 3 chr2B.!!$F2 3514
8 TraesCS2D01G206300 chr2B 357951544 357952050 506 False 736.000000 736 93.307000 4032 4524 1 chr2B.!!$F1 492
9 TraesCS2D01G206300 chr2B 563045822 563046400 578 True 671.000000 671 87.565000 1045 1623 1 chr2B.!!$R2 578
10 TraesCS2D01G206300 chr2B 563184338 563184913 575 True 638.000000 638 86.632000 1048 1623 1 chr2B.!!$R3 575
11 TraesCS2D01G206300 chr7B 10956096 10956601 505 True 739.000000 739 93.529000 4032 4524 1 chr7B.!!$R1 492
12 TraesCS2D01G206300 chr6A 101831364 101831884 520 False 621.000000 621 89.060000 4032 4524 1 chr6A.!!$F1 492
13 TraesCS2D01G206300 chr5D 128564864 128565428 564 True 569.000000 569 84.912000 1054 1621 1 chr5D.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.035056 GTGGACCTCACCTTCATGGG 60.035 60.0 0.00 0.0 40.39 4.00 F
130 131 0.036164 CACCTTCATGGGGACGTTCA 59.964 55.0 11.59 0.0 43.63 3.18 F
456 457 0.035056 ACAGTTGTATGCCCAGCTCC 60.035 55.0 0.00 0.0 0.00 4.70 F
462 463 0.037232 GTATGCCCAGCTCCCGTATC 60.037 60.0 0.00 0.0 0.00 2.24 F
985 1005 0.321122 CGAGAAGGAACAGCAAGGCT 60.321 55.0 0.00 0.0 40.77 4.58 F
2642 2922 0.108186 CACCTCTCGTTGGCAGCATA 60.108 55.0 1.39 0.0 0.00 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1645 1667 1.821216 GAAAGAATTCTGTGGCCCGA 58.179 50.000 9.17 0.0 32.57 5.14 R
1664 1686 7.178074 ACGAACAAGAAAACTTTACTTTCTCG 58.822 34.615 0.00 0.0 41.24 4.04 R
2324 2582 0.794473 GCGCCAGTACAACTGTTACC 59.206 55.000 0.00 0.0 44.50 2.85 R
2453 2713 5.303971 CATGGATGAGATGGGACTTAACTC 58.696 45.833 0.00 0.0 0.00 3.01 R
2707 2990 0.107508 ATGCCATCACCGGACAGAAG 60.108 55.000 9.46 0.0 0.00 2.85 R
3969 4652 1.237285 ACAAGAGTTGGCGCATCACC 61.237 55.000 10.83 0.0 34.12 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.055580 GGCATAGGAGGAGGAGCG 58.944 66.667 0.00 0.00 0.00 5.03
18 19 2.578714 GGCATAGGAGGAGGAGCGG 61.579 68.421 0.00 0.00 0.00 5.52
19 20 1.834822 GCATAGGAGGAGGAGCGGT 60.835 63.158 0.00 0.00 0.00 5.68
20 21 0.539901 GCATAGGAGGAGGAGCGGTA 60.540 60.000 0.00 0.00 0.00 4.02
21 22 1.249407 CATAGGAGGAGGAGCGGTAC 58.751 60.000 0.00 0.00 0.00 3.34
22 23 0.851469 ATAGGAGGAGGAGCGGTACA 59.149 55.000 0.00 0.00 0.00 2.90
23 24 0.627451 TAGGAGGAGGAGCGGTACAA 59.373 55.000 0.00 0.00 0.00 2.41
24 25 0.971447 AGGAGGAGGAGCGGTACAAC 60.971 60.000 0.00 0.00 0.00 3.32
25 26 1.516423 GAGGAGGAGCGGTACAACC 59.484 63.158 0.00 1.92 34.05 3.77
26 27 0.971447 GAGGAGGAGCGGTACAACCT 60.971 60.000 13.96 13.96 35.66 3.50
27 28 0.971447 AGGAGGAGCGGTACAACCTC 60.971 60.000 10.73 10.73 45.50 3.85
28 29 1.139095 GAGGAGCGGTACAACCTCG 59.861 63.158 0.00 0.00 39.27 4.63
32 33 4.078516 GCGGTACAACCTCGCCCT 62.079 66.667 2.49 0.00 43.17 5.19
33 34 2.125673 CGGTACAACCTCGCCCTG 60.126 66.667 0.00 0.00 35.66 4.45
34 35 2.939261 CGGTACAACCTCGCCCTGT 61.939 63.158 0.00 0.00 35.66 4.00
35 36 1.597797 CGGTACAACCTCGCCCTGTA 61.598 60.000 0.00 0.00 35.66 2.74
36 37 0.108472 GGTACAACCTCGCCCTGTAC 60.108 60.000 0.00 3.54 43.00 2.90
37 38 0.457337 GTACAACCTCGCCCTGTACG 60.457 60.000 0.00 0.00 36.96 3.67
38 39 2.216750 TACAACCTCGCCCTGTACGC 62.217 60.000 0.00 0.00 0.00 4.42
39 40 4.078516 AACCTCGCCCTGTACGCC 62.079 66.667 0.00 0.00 0.00 5.68
56 57 3.349006 CGGCAGCTGCACTTCGTT 61.349 61.111 37.63 0.00 44.36 3.85
57 58 2.558313 GGCAGCTGCACTTCGTTC 59.442 61.111 37.63 15.84 44.36 3.95
58 59 2.171940 GCAGCTGCACTTCGTTCG 59.828 61.111 33.36 0.00 41.59 3.95
59 60 2.310233 GCAGCTGCACTTCGTTCGA 61.310 57.895 33.36 0.00 41.59 3.71
60 61 1.630244 GCAGCTGCACTTCGTTCGAT 61.630 55.000 33.36 0.00 41.59 3.59
61 62 0.792640 CAGCTGCACTTCGTTCGATT 59.207 50.000 0.00 0.00 0.00 3.34
62 63 1.071605 AGCTGCACTTCGTTCGATTC 58.928 50.000 1.02 0.00 0.00 2.52
63 64 0.246912 GCTGCACTTCGTTCGATTCG 60.247 55.000 0.00 0.00 0.00 3.34
64 65 0.366871 CTGCACTTCGTTCGATTCGG 59.633 55.000 6.18 0.00 0.00 4.30
65 66 1.011968 TGCACTTCGTTCGATTCGGG 61.012 55.000 6.18 0.00 0.00 5.14
66 67 1.708027 CACTTCGTTCGATTCGGGC 59.292 57.895 6.18 0.00 0.00 6.13
67 68 1.447314 ACTTCGTTCGATTCGGGCC 60.447 57.895 6.18 0.00 0.00 5.80
68 69 2.507547 TTCGTTCGATTCGGGCCG 60.508 61.111 22.51 22.51 0.00 6.13
71 72 2.105528 GTTCGATTCGGGCCGCTA 59.894 61.111 23.83 12.46 0.00 4.26
72 73 2.105528 TTCGATTCGGGCCGCTAC 59.894 61.111 23.83 13.22 0.00 3.58
73 74 3.761445 TTCGATTCGGGCCGCTACG 62.761 63.158 23.83 23.82 0.00 3.51
74 75 4.260355 CGATTCGGGCCGCTACGA 62.260 66.667 23.83 0.00 37.33 3.43
75 76 2.338984 GATTCGGGCCGCTACGAT 59.661 61.111 23.83 9.59 39.06 3.73
76 77 1.733399 GATTCGGGCCGCTACGATC 60.733 63.158 23.83 14.53 39.06 3.69
77 78 2.416244 GATTCGGGCCGCTACGATCA 62.416 60.000 23.83 0.00 39.06 2.92
78 79 1.816863 ATTCGGGCCGCTACGATCAT 61.817 55.000 23.83 0.00 39.06 2.45
79 80 1.174078 TTCGGGCCGCTACGATCATA 61.174 55.000 23.83 0.00 39.06 2.15
80 81 1.174078 TCGGGCCGCTACGATCATAA 61.174 55.000 23.83 0.00 33.69 1.90
81 82 0.732880 CGGGCCGCTACGATCATAAG 60.733 60.000 15.42 0.00 0.00 1.73
82 83 0.317479 GGGCCGCTACGATCATAAGT 59.683 55.000 0.00 0.00 0.00 2.24
83 84 1.270147 GGGCCGCTACGATCATAAGTT 60.270 52.381 0.00 0.00 0.00 2.66
84 85 2.059541 GGCCGCTACGATCATAAGTTC 58.940 52.381 0.00 0.00 0.00 3.01
85 86 1.714460 GCCGCTACGATCATAAGTTCG 59.286 52.381 0.00 0.00 41.50 3.95
86 87 2.316792 CCGCTACGATCATAAGTTCGG 58.683 52.381 3.76 0.00 40.38 4.30
87 88 1.714460 CGCTACGATCATAAGTTCGGC 59.286 52.381 3.76 0.00 40.38 5.54
88 89 2.059541 GCTACGATCATAAGTTCGGCC 58.940 52.381 0.00 0.00 40.38 6.13
89 90 2.673833 CTACGATCATAAGTTCGGCCC 58.326 52.381 0.00 0.00 40.38 5.80
90 91 0.249322 ACGATCATAAGTTCGGCCCG 60.249 55.000 0.00 0.00 40.38 6.13
91 92 0.249322 CGATCATAAGTTCGGCCCGT 60.249 55.000 1.63 0.00 34.24 5.28
92 93 1.499049 GATCATAAGTTCGGCCCGTC 58.501 55.000 1.63 0.00 0.00 4.79
93 94 0.106149 ATCATAAGTTCGGCCCGTCC 59.894 55.000 1.63 0.00 0.00 4.79
94 95 1.219664 CATAAGTTCGGCCCGTCCA 59.780 57.895 1.63 0.00 34.01 4.02
95 96 0.179056 CATAAGTTCGGCCCGTCCAT 60.179 55.000 1.63 0.00 34.01 3.41
96 97 0.179056 ATAAGTTCGGCCCGTCCATG 60.179 55.000 1.63 0.00 34.01 3.66
97 98 1.546589 TAAGTTCGGCCCGTCCATGT 61.547 55.000 1.63 0.00 34.01 3.21
98 99 2.798148 AAGTTCGGCCCGTCCATGTC 62.798 60.000 1.63 0.00 34.01 3.06
99 100 4.090588 TTCGGCCCGTCCATGTCC 62.091 66.667 1.63 0.00 34.01 4.02
101 102 4.175337 CGGCCCGTCCATGTCCAT 62.175 66.667 0.00 0.00 34.01 3.41
102 103 2.203209 GGCCCGTCCATGTCCATC 60.203 66.667 0.00 0.00 34.01 3.51
103 104 2.588877 GCCCGTCCATGTCCATCG 60.589 66.667 0.00 0.00 0.00 3.84
104 105 2.900273 CCCGTCCATGTCCATCGT 59.100 61.111 0.00 0.00 0.00 3.73
105 106 1.521457 CCCGTCCATGTCCATCGTG 60.521 63.158 0.00 0.00 0.00 4.35
114 115 3.708210 TCCATCGTGGACCTCACC 58.292 61.111 3.02 0.00 42.67 4.02
115 116 1.078528 TCCATCGTGGACCTCACCT 59.921 57.895 3.02 0.00 42.67 4.00
116 117 0.544357 TCCATCGTGGACCTCACCTT 60.544 55.000 3.02 0.00 42.67 3.50
117 118 0.108138 CCATCGTGGACCTCACCTTC 60.108 60.000 0.00 0.00 40.96 3.46
118 119 0.608130 CATCGTGGACCTCACCTTCA 59.392 55.000 0.00 0.00 43.23 3.02
119 120 1.208052 CATCGTGGACCTCACCTTCAT 59.792 52.381 0.00 0.00 43.23 2.57
120 121 0.608130 TCGTGGACCTCACCTTCATG 59.392 55.000 0.00 0.00 43.23 3.07
121 122 0.391661 CGTGGACCTCACCTTCATGG 60.392 60.000 0.00 0.00 43.23 3.66
122 123 0.035056 GTGGACCTCACCTTCATGGG 60.035 60.000 0.00 0.00 40.39 4.00
123 124 1.207488 TGGACCTCACCTTCATGGGG 61.207 60.000 0.00 0.00 46.81 4.96
125 126 0.253327 GACCTCACCTTCATGGGGAC 59.747 60.000 11.59 0.00 44.85 4.46
126 127 1.221840 CCTCACCTTCATGGGGACG 59.778 63.158 11.59 3.96 44.85 4.79
127 128 1.553690 CCTCACCTTCATGGGGACGT 61.554 60.000 11.59 0.00 44.85 4.34
128 129 0.324943 CTCACCTTCATGGGGACGTT 59.675 55.000 11.59 0.00 44.85 3.99
129 130 0.323629 TCACCTTCATGGGGACGTTC 59.676 55.000 11.59 0.00 44.85 3.95
130 131 0.036164 CACCTTCATGGGGACGTTCA 59.964 55.000 11.59 0.00 43.63 3.18
131 132 0.324943 ACCTTCATGGGGACGTTCAG 59.675 55.000 11.59 0.00 41.11 3.02
132 133 0.392998 CCTTCATGGGGACGTTCAGG 60.393 60.000 0.00 0.00 0.00 3.86
133 134 1.002624 TTCATGGGGACGTTCAGGC 60.003 57.895 0.00 0.00 0.00 4.85
140 141 3.241177 GACGTTCAGGCCACGAAC 58.759 61.111 22.07 22.07 40.20 3.95
141 142 1.300697 GACGTTCAGGCCACGAACT 60.301 57.895 26.40 17.46 40.50 3.01
142 143 1.282930 GACGTTCAGGCCACGAACTC 61.283 60.000 26.40 20.34 40.50 3.01
143 144 2.027625 CGTTCAGGCCACGAACTCC 61.028 63.158 26.40 9.26 40.50 3.85
144 145 1.070786 GTTCAGGCCACGAACTCCA 59.929 57.895 23.78 0.00 39.72 3.86
145 146 0.534203 GTTCAGGCCACGAACTCCAA 60.534 55.000 23.78 0.00 39.72 3.53
146 147 0.400213 TTCAGGCCACGAACTCCAAT 59.600 50.000 5.01 0.00 0.00 3.16
147 148 0.321564 TCAGGCCACGAACTCCAATG 60.322 55.000 5.01 0.00 0.00 2.82
148 149 0.321564 CAGGCCACGAACTCCAATGA 60.322 55.000 5.01 0.00 0.00 2.57
149 150 0.036010 AGGCCACGAACTCCAATGAG 60.036 55.000 5.01 0.00 44.62 2.90
150 151 1.026718 GGCCACGAACTCCAATGAGG 61.027 60.000 0.00 0.00 43.29 3.86
151 152 0.036388 GCCACGAACTCCAATGAGGA 60.036 55.000 0.00 0.00 46.75 3.71
164 165 6.924913 TCCAATGAGGAAGAGTAGGATATG 57.075 41.667 0.00 0.00 45.65 1.78
165 166 5.782331 TCCAATGAGGAAGAGTAGGATATGG 59.218 44.000 0.00 0.00 45.65 2.74
166 167 5.046014 CCAATGAGGAAGAGTAGGATATGGG 60.046 48.000 0.00 0.00 41.22 4.00
167 168 5.623551 ATGAGGAAGAGTAGGATATGGGA 57.376 43.478 0.00 0.00 0.00 4.37
168 169 5.004361 TGAGGAAGAGTAGGATATGGGAG 57.996 47.826 0.00 0.00 0.00 4.30
169 170 4.670247 TGAGGAAGAGTAGGATATGGGAGA 59.330 45.833 0.00 0.00 0.00 3.71
170 171 5.005628 AGGAAGAGTAGGATATGGGAGAC 57.994 47.826 0.00 0.00 0.00 3.36
171 172 3.759618 GGAAGAGTAGGATATGGGAGACG 59.240 52.174 0.00 0.00 0.00 4.18
172 173 3.443145 AGAGTAGGATATGGGAGACGG 57.557 52.381 0.00 0.00 0.00 4.79
173 174 2.987437 AGAGTAGGATATGGGAGACGGA 59.013 50.000 0.00 0.00 0.00 4.69
174 175 3.009695 AGAGTAGGATATGGGAGACGGAG 59.990 52.174 0.00 0.00 0.00 4.63
175 176 2.041891 AGTAGGATATGGGAGACGGAGG 59.958 54.545 0.00 0.00 0.00 4.30
176 177 0.543174 AGGATATGGGAGACGGAGGC 60.543 60.000 0.00 0.00 0.00 4.70
177 178 0.832135 GGATATGGGAGACGGAGGCA 60.832 60.000 0.00 0.00 0.00 4.75
178 179 1.270907 GATATGGGAGACGGAGGCAT 58.729 55.000 0.00 0.00 0.00 4.40
179 180 1.205893 GATATGGGAGACGGAGGCATC 59.794 57.143 0.00 0.00 0.00 3.91
180 181 1.179174 TATGGGAGACGGAGGCATCG 61.179 60.000 0.00 0.00 0.00 3.84
181 182 3.917760 GGGAGACGGAGGCATCGG 61.918 72.222 4.22 4.22 0.00 4.18
182 183 3.148279 GGAGACGGAGGCATCGGT 61.148 66.667 11.59 11.59 41.29 4.69
183 184 2.105128 GAGACGGAGGCATCGGTG 59.895 66.667 16.63 0.00 38.94 4.94
184 185 2.680352 AGACGGAGGCATCGGTGT 60.680 61.111 16.63 9.68 38.94 4.16
185 186 2.202756 GACGGAGGCATCGGTGTC 60.203 66.667 16.63 8.63 38.94 3.67
186 187 2.680352 ACGGAGGCATCGGTGTCT 60.680 61.111 0.20 0.20 44.61 3.41
191 192 2.290847 AGGCATCGGTGTCTCATGT 58.709 52.632 0.00 0.00 34.53 3.21
192 193 0.176680 AGGCATCGGTGTCTCATGTC 59.823 55.000 0.00 0.00 34.53 3.06
193 194 0.176680 GGCATCGGTGTCTCATGTCT 59.823 55.000 0.00 0.00 0.00 3.41
194 195 1.409064 GGCATCGGTGTCTCATGTCTA 59.591 52.381 0.00 0.00 0.00 2.59
195 196 2.464865 GCATCGGTGTCTCATGTCTAC 58.535 52.381 0.00 0.00 0.00 2.59
196 197 2.099921 GCATCGGTGTCTCATGTCTACT 59.900 50.000 0.00 0.00 0.00 2.57
197 198 3.793801 GCATCGGTGTCTCATGTCTACTC 60.794 52.174 0.00 0.00 0.00 2.59
198 199 3.351794 TCGGTGTCTCATGTCTACTCT 57.648 47.619 0.00 0.00 0.00 3.24
199 200 3.687125 TCGGTGTCTCATGTCTACTCTT 58.313 45.455 0.00 0.00 0.00 2.85
200 201 3.690139 TCGGTGTCTCATGTCTACTCTTC 59.310 47.826 0.00 0.00 0.00 2.87
201 202 3.181495 CGGTGTCTCATGTCTACTCTTCC 60.181 52.174 0.00 0.00 0.00 3.46
202 203 4.020543 GGTGTCTCATGTCTACTCTTCCT 58.979 47.826 0.00 0.00 0.00 3.36
203 204 4.464597 GGTGTCTCATGTCTACTCTTCCTT 59.535 45.833 0.00 0.00 0.00 3.36
204 205 5.406649 GTGTCTCATGTCTACTCTTCCTTG 58.593 45.833 0.00 0.00 0.00 3.61
205 206 4.081972 TGTCTCATGTCTACTCTTCCTTGC 60.082 45.833 0.00 0.00 0.00 4.01
206 207 3.449018 TCTCATGTCTACTCTTCCTTGCC 59.551 47.826 0.00 0.00 0.00 4.52
207 208 2.166459 TCATGTCTACTCTTCCTTGCCG 59.834 50.000 0.00 0.00 0.00 5.69
208 209 0.895530 TGTCTACTCTTCCTTGCCGG 59.104 55.000 0.00 0.00 0.00 6.13
209 210 1.183549 GTCTACTCTTCCTTGCCGGA 58.816 55.000 5.05 0.00 41.06 5.14
210 211 1.135333 GTCTACTCTTCCTTGCCGGAG 59.865 57.143 5.05 0.00 44.28 4.63
211 212 1.005569 TCTACTCTTCCTTGCCGGAGA 59.994 52.381 5.05 0.00 44.28 3.71
212 213 1.135333 CTACTCTTCCTTGCCGGAGAC 59.865 57.143 5.05 0.00 44.28 3.36
213 214 1.219393 CTCTTCCTTGCCGGAGACC 59.781 63.158 5.05 0.00 44.28 3.85
214 215 2.245438 CTCTTCCTTGCCGGAGACCC 62.245 65.000 5.05 0.00 44.28 4.46
225 226 4.070552 GAGACCCGCGGCTTCACT 62.071 66.667 22.85 13.32 0.00 3.41
226 227 3.591254 GAGACCCGCGGCTTCACTT 62.591 63.158 22.85 2.01 0.00 3.16
227 228 3.119096 GACCCGCGGCTTCACTTC 61.119 66.667 22.85 2.54 0.00 3.01
228 229 4.699522 ACCCGCGGCTTCACTTCC 62.700 66.667 22.85 0.00 0.00 3.46
229 230 4.697756 CCCGCGGCTTCACTTCCA 62.698 66.667 22.85 0.00 0.00 3.53
230 231 3.121030 CCGCGGCTTCACTTCCAG 61.121 66.667 14.67 0.00 0.00 3.86
231 232 3.121030 CGCGGCTTCACTTCCAGG 61.121 66.667 0.00 0.00 0.00 4.45
232 233 2.747855 GCGGCTTCACTTCCAGGG 60.748 66.667 0.00 0.00 0.00 4.45
233 234 2.045926 CGGCTTCACTTCCAGGGG 60.046 66.667 0.00 0.00 0.00 4.79
234 235 2.361737 GGCTTCACTTCCAGGGGC 60.362 66.667 0.00 0.00 0.00 5.80
235 236 2.759795 GCTTCACTTCCAGGGGCT 59.240 61.111 0.00 0.00 0.00 5.19
236 237 1.377856 GCTTCACTTCCAGGGGCTC 60.378 63.158 0.00 0.00 0.00 4.70
237 238 2.069776 CTTCACTTCCAGGGGCTCA 58.930 57.895 0.00 0.00 0.00 4.26
238 239 0.622665 CTTCACTTCCAGGGGCTCAT 59.377 55.000 0.00 0.00 0.00 2.90
239 240 0.329261 TTCACTTCCAGGGGCTCATG 59.671 55.000 0.00 0.00 0.00 3.07
240 241 1.077212 CACTTCCAGGGGCTCATGG 60.077 63.158 12.17 12.17 45.52 3.66
241 242 2.123982 CTTCCAGGGGCTCATGGC 60.124 66.667 13.85 0.00 43.95 4.40
250 251 3.285215 GCTCATGGCCGCTGGATG 61.285 66.667 0.00 0.00 34.27 3.51
251 252 2.593725 CTCATGGCCGCTGGATGG 60.594 66.667 0.00 0.00 0.00 3.51
252 253 3.089217 TCATGGCCGCTGGATGGA 61.089 61.111 0.00 0.00 0.00 3.41
253 254 2.903855 CATGGCCGCTGGATGGAC 60.904 66.667 0.00 0.00 33.95 4.02
255 256 4.408821 TGGCCGCTGGATGGACAC 62.409 66.667 0.00 0.00 40.44 3.67
260 261 4.408821 GCTGGATGGACACGGCCA 62.409 66.667 2.24 0.00 43.23 5.36
265 266 4.127744 ATGGACACGGCCATGGGG 62.128 66.667 15.13 0.00 46.62 4.96
267 268 4.041762 GGACACGGCCATGGGGAA 62.042 66.667 15.13 0.00 35.59 3.97
268 269 2.750237 GACACGGCCATGGGGAAC 60.750 66.667 15.13 0.00 35.59 3.62
269 270 3.561120 GACACGGCCATGGGGAACA 62.561 63.158 15.13 0.00 35.59 3.18
270 271 2.282816 CACGGCCATGGGGAACAA 60.283 61.111 15.13 0.00 35.59 2.83
271 272 2.282887 ACGGCCATGGGGAACAAC 60.283 61.111 15.13 0.00 35.59 3.32
272 273 2.282816 CGGCCATGGGGAACAACA 60.283 61.111 15.13 0.00 35.59 3.33
273 274 1.905843 CGGCCATGGGGAACAACAA 60.906 57.895 15.13 0.00 35.59 2.83
274 275 1.876497 CGGCCATGGGGAACAACAAG 61.876 60.000 15.13 0.00 35.59 3.16
275 276 1.543944 GGCCATGGGGAACAACAAGG 61.544 60.000 15.13 0.00 35.59 3.61
276 277 0.541764 GCCATGGGGAACAACAAGGA 60.542 55.000 15.13 0.00 35.59 3.36
277 278 1.256812 CCATGGGGAACAACAAGGAC 58.743 55.000 2.85 0.00 35.59 3.85
278 279 1.203050 CCATGGGGAACAACAAGGACT 60.203 52.381 2.85 0.00 35.59 3.85
279 280 2.597455 CATGGGGAACAACAAGGACTT 58.403 47.619 0.00 0.00 0.00 3.01
280 281 2.065899 TGGGGAACAACAAGGACTTG 57.934 50.000 10.34 10.34 45.58 3.16
281 282 1.328279 GGGGAACAACAAGGACTTGG 58.672 55.000 15.72 2.45 44.45 3.61
282 283 1.133606 GGGGAACAACAAGGACTTGGA 60.134 52.381 15.72 0.00 44.45 3.53
283 284 1.954382 GGGAACAACAAGGACTTGGAC 59.046 52.381 15.72 3.30 44.45 4.02
284 285 1.602377 GGAACAACAAGGACTTGGACG 59.398 52.381 15.72 6.56 44.45 4.79
285 286 1.002792 GAACAACAAGGACTTGGACGC 60.003 52.381 15.72 0.00 44.45 5.19
286 287 0.818040 ACAACAAGGACTTGGACGCC 60.818 55.000 15.72 0.00 44.45 5.68
287 288 1.597027 AACAAGGACTTGGACGCCG 60.597 57.895 15.72 0.00 44.45 6.46
288 289 2.035237 AACAAGGACTTGGACGCCGA 62.035 55.000 15.72 0.00 44.45 5.54
289 290 2.027625 CAAGGACTTGGACGCCGAC 61.028 63.158 4.15 0.00 36.95 4.79
291 292 4.047059 GGACTTGGACGCCGACGA 62.047 66.667 0.00 0.00 43.93 4.20
292 293 2.049802 GACTTGGACGCCGACGAA 60.050 61.111 0.00 0.00 43.93 3.85
293 294 2.049433 ACTTGGACGCCGACGAAG 60.049 61.111 9.39 9.39 43.93 3.79
294 295 2.257371 CTTGGACGCCGACGAAGA 59.743 61.111 5.52 0.00 43.93 2.87
295 296 1.153823 CTTGGACGCCGACGAAGAT 60.154 57.895 5.52 0.00 43.93 2.40
296 297 0.736325 CTTGGACGCCGACGAAGATT 60.736 55.000 5.52 0.00 43.93 2.40
297 298 0.320073 TTGGACGCCGACGAAGATTT 60.320 50.000 0.00 0.00 43.93 2.17
298 299 0.527113 TGGACGCCGACGAAGATTTA 59.473 50.000 0.00 0.00 43.93 1.40
299 300 1.197910 GGACGCCGACGAAGATTTAG 58.802 55.000 0.00 0.00 43.93 1.85
300 301 1.202222 GGACGCCGACGAAGATTTAGA 60.202 52.381 0.00 0.00 43.93 2.10
301 302 1.844962 GACGCCGACGAAGATTTAGAC 59.155 52.381 0.00 0.00 43.93 2.59
302 303 1.471684 ACGCCGACGAAGATTTAGACT 59.528 47.619 0.00 0.00 43.93 3.24
303 304 2.679837 ACGCCGACGAAGATTTAGACTA 59.320 45.455 0.00 0.00 43.93 2.59
304 305 3.242673 ACGCCGACGAAGATTTAGACTAG 60.243 47.826 0.00 0.00 43.93 2.57
305 306 3.630101 GCCGACGAAGATTTAGACTAGG 58.370 50.000 0.00 0.00 0.00 3.02
306 307 3.066481 GCCGACGAAGATTTAGACTAGGT 59.934 47.826 0.00 0.00 0.00 3.08
307 308 4.439837 GCCGACGAAGATTTAGACTAGGTT 60.440 45.833 0.00 0.00 0.00 3.50
308 309 5.220931 GCCGACGAAGATTTAGACTAGGTTA 60.221 44.000 0.00 0.00 0.00 2.85
309 310 6.678900 GCCGACGAAGATTTAGACTAGGTTAA 60.679 42.308 0.00 0.00 0.00 2.01
310 311 6.690528 CCGACGAAGATTTAGACTAGGTTAAC 59.309 42.308 0.00 0.00 0.00 2.01
311 312 7.414984 CCGACGAAGATTTAGACTAGGTTAACT 60.415 40.741 5.42 0.00 0.00 2.24
312 313 7.967303 CGACGAAGATTTAGACTAGGTTAACTT 59.033 37.037 5.42 0.00 0.00 2.66
313 314 9.636879 GACGAAGATTTAGACTAGGTTAACTTT 57.363 33.333 5.42 0.00 0.00 2.66
314 315 9.636879 ACGAAGATTTAGACTAGGTTAACTTTC 57.363 33.333 5.42 0.00 0.00 2.62
315 316 9.635520 CGAAGATTTAGACTAGGTTAACTTTCA 57.364 33.333 5.42 0.00 0.00 2.69
321 322 9.895138 TTTAGACTAGGTTAACTTTCAAACACT 57.105 29.630 5.42 0.00 0.00 3.55
322 323 9.895138 TTAGACTAGGTTAACTTTCAAACACTT 57.105 29.630 5.42 0.00 0.00 3.16
323 324 8.803397 AGACTAGGTTAACTTTCAAACACTTT 57.197 30.769 5.42 0.00 0.00 2.66
324 325 9.239551 AGACTAGGTTAACTTTCAAACACTTTT 57.760 29.630 5.42 0.00 0.00 2.27
325 326 9.285770 GACTAGGTTAACTTTCAAACACTTTTG 57.714 33.333 5.42 0.00 43.17 2.44
326 327 8.799367 ACTAGGTTAACTTTCAAACACTTTTGT 58.201 29.630 5.42 0.00 42.51 2.83
383 384 8.123639 TGGTCCGGTTTAAATAAAAATCATCA 57.876 30.769 0.00 0.00 0.00 3.07
384 385 8.754080 TGGTCCGGTTTAAATAAAAATCATCAT 58.246 29.630 0.00 0.00 0.00 2.45
385 386 9.030301 GGTCCGGTTTAAATAAAAATCATCATG 57.970 33.333 0.00 0.00 0.00 3.07
386 387 9.581099 GTCCGGTTTAAATAAAAATCATCATGT 57.419 29.630 0.00 0.00 0.00 3.21
400 401 9.781633 AAAATCATCATGTTTCCAAGAAAATCA 57.218 25.926 0.00 0.00 0.00 2.57
401 402 9.953565 AAATCATCATGTTTCCAAGAAAATCAT 57.046 25.926 0.00 0.00 0.00 2.45
402 403 9.595823 AATCATCATGTTTCCAAGAAAATCATC 57.404 29.630 0.00 0.00 0.00 2.92
403 404 7.549839 TCATCATGTTTCCAAGAAAATCATCC 58.450 34.615 0.00 0.00 0.00 3.51
404 405 5.953183 TCATGTTTCCAAGAAAATCATCCG 58.047 37.500 0.00 0.00 0.00 4.18
405 406 4.782019 TGTTTCCAAGAAAATCATCCGG 57.218 40.909 0.00 0.00 0.00 5.14
406 407 4.148838 TGTTTCCAAGAAAATCATCCGGT 58.851 39.130 0.00 0.00 0.00 5.28
407 408 4.586841 TGTTTCCAAGAAAATCATCCGGTT 59.413 37.500 0.00 0.00 0.00 4.44
408 409 5.069781 TGTTTCCAAGAAAATCATCCGGTTT 59.930 36.000 0.00 0.00 0.00 3.27
409 410 4.782019 TCCAAGAAAATCATCCGGTTTG 57.218 40.909 0.00 0.36 0.00 2.93
410 411 4.148838 TCCAAGAAAATCATCCGGTTTGT 58.851 39.130 0.00 0.00 0.00 2.83
411 412 4.217550 TCCAAGAAAATCATCCGGTTTGTC 59.782 41.667 0.00 0.00 0.00 3.18
412 413 4.022416 CCAAGAAAATCATCCGGTTTGTCA 60.022 41.667 0.00 0.00 0.00 3.58
413 414 5.156355 CAAGAAAATCATCCGGTTTGTCAG 58.844 41.667 0.00 0.00 0.00 3.51
414 415 4.398319 AGAAAATCATCCGGTTTGTCAGT 58.602 39.130 0.00 0.00 0.00 3.41
415 416 4.216257 AGAAAATCATCCGGTTTGTCAGTG 59.784 41.667 0.00 0.00 0.00 3.66
416 417 3.417069 AATCATCCGGTTTGTCAGTGA 57.583 42.857 0.00 0.00 0.00 3.41
417 418 2.920724 TCATCCGGTTTGTCAGTGAA 57.079 45.000 0.00 0.00 0.00 3.18
418 419 3.201353 TCATCCGGTTTGTCAGTGAAA 57.799 42.857 0.00 0.00 0.00 2.69
419 420 3.750371 TCATCCGGTTTGTCAGTGAAAT 58.250 40.909 0.00 0.00 0.00 2.17
420 421 3.501828 TCATCCGGTTTGTCAGTGAAATG 59.498 43.478 0.00 0.00 0.00 2.32
421 422 1.606668 TCCGGTTTGTCAGTGAAATGC 59.393 47.619 0.00 0.00 0.00 3.56
422 423 1.662876 CCGGTTTGTCAGTGAAATGCG 60.663 52.381 0.00 0.00 0.00 4.73
423 424 1.662876 CGGTTTGTCAGTGAAATGCGG 60.663 52.381 0.00 0.00 0.00 5.69
424 425 1.335872 GGTTTGTCAGTGAAATGCGGG 60.336 52.381 0.00 0.00 0.00 6.13
425 426 0.313672 TTTGTCAGTGAAATGCGGGC 59.686 50.000 0.00 0.00 0.00 6.13
426 427 0.821301 TTGTCAGTGAAATGCGGGCA 60.821 50.000 0.00 0.00 0.00 5.36
427 428 0.608856 TGTCAGTGAAATGCGGGCAT 60.609 50.000 0.00 0.00 38.46 4.40
437 438 2.346766 ATGCGGGCATTTGAGATACA 57.653 45.000 0.00 0.00 31.82 2.29
438 439 1.378531 TGCGGGCATTTGAGATACAC 58.621 50.000 0.00 0.00 0.00 2.90
439 440 1.339535 TGCGGGCATTTGAGATACACA 60.340 47.619 0.00 0.00 0.00 3.72
440 441 1.331756 GCGGGCATTTGAGATACACAG 59.668 52.381 0.00 0.00 0.00 3.66
441 442 2.632377 CGGGCATTTGAGATACACAGT 58.368 47.619 0.00 0.00 0.00 3.55
442 443 3.009723 CGGGCATTTGAGATACACAGTT 58.990 45.455 0.00 0.00 0.00 3.16
443 444 3.181507 CGGGCATTTGAGATACACAGTTG 60.182 47.826 0.00 0.00 0.00 3.16
444 445 3.758554 GGGCATTTGAGATACACAGTTGT 59.241 43.478 0.00 0.00 40.02 3.32
445 446 4.941263 GGGCATTTGAGATACACAGTTGTA 59.059 41.667 0.00 0.00 42.53 2.41
447 448 6.458751 GGGCATTTGAGATACACAGTTGTATG 60.459 42.308 2.04 0.00 47.00 2.39
448 449 5.967674 GCATTTGAGATACACAGTTGTATGC 59.032 40.000 2.04 0.00 47.00 3.14
449 450 6.489675 CATTTGAGATACACAGTTGTATGCC 58.510 40.000 2.04 0.00 47.00 4.40
450 451 4.137116 TGAGATACACAGTTGTATGCCC 57.863 45.455 2.04 0.00 47.00 5.36
451 452 3.517500 TGAGATACACAGTTGTATGCCCA 59.482 43.478 2.04 0.00 47.00 5.36
452 453 4.122776 GAGATACACAGTTGTATGCCCAG 58.877 47.826 2.04 0.00 47.00 4.45
453 454 2.107950 TACACAGTTGTATGCCCAGC 57.892 50.000 0.00 0.00 37.15 4.85
454 455 0.401738 ACACAGTTGTATGCCCAGCT 59.598 50.000 0.00 0.00 32.60 4.24
455 456 1.089920 CACAGTTGTATGCCCAGCTC 58.910 55.000 0.00 0.00 0.00 4.09
456 457 0.035056 ACAGTTGTATGCCCAGCTCC 60.035 55.000 0.00 0.00 0.00 4.70
457 458 0.749454 CAGTTGTATGCCCAGCTCCC 60.749 60.000 0.00 0.00 0.00 4.30
458 459 1.819632 GTTGTATGCCCAGCTCCCG 60.820 63.158 0.00 0.00 0.00 5.14
459 460 2.297895 TTGTATGCCCAGCTCCCGT 61.298 57.895 0.00 0.00 0.00 5.28
460 461 0.978667 TTGTATGCCCAGCTCCCGTA 60.979 55.000 0.00 0.00 0.00 4.02
461 462 0.762842 TGTATGCCCAGCTCCCGTAT 60.763 55.000 0.00 0.00 0.00 3.06
462 463 0.037232 GTATGCCCAGCTCCCGTATC 60.037 60.000 0.00 0.00 0.00 2.24
463 464 0.471022 TATGCCCAGCTCCCGTATCA 60.471 55.000 0.00 0.00 0.00 2.15
464 465 2.044806 ATGCCCAGCTCCCGTATCAC 62.045 60.000 0.00 0.00 0.00 3.06
465 466 2.435693 GCCCAGCTCCCGTATCACT 61.436 63.158 0.00 0.00 0.00 3.41
466 467 1.113517 GCCCAGCTCCCGTATCACTA 61.114 60.000 0.00 0.00 0.00 2.74
467 468 1.633774 CCCAGCTCCCGTATCACTAT 58.366 55.000 0.00 0.00 0.00 2.12
468 469 1.971357 CCCAGCTCCCGTATCACTATT 59.029 52.381 0.00 0.00 0.00 1.73
469 470 2.368875 CCCAGCTCCCGTATCACTATTT 59.631 50.000 0.00 0.00 0.00 1.40
470 471 3.393800 CCAGCTCCCGTATCACTATTTG 58.606 50.000 0.00 0.00 0.00 2.32
471 472 2.802816 CAGCTCCCGTATCACTATTTGC 59.197 50.000 0.00 0.00 0.00 3.68
472 473 1.792949 GCTCCCGTATCACTATTTGCG 59.207 52.381 0.00 0.00 0.00 4.85
473 474 1.792949 CTCCCGTATCACTATTTGCGC 59.207 52.381 0.00 0.00 0.00 6.09
474 475 0.506932 CCCGTATCACTATTTGCGCG 59.493 55.000 0.00 0.00 0.00 6.86
475 476 0.506932 CCGTATCACTATTTGCGCGG 59.493 55.000 8.83 0.00 0.00 6.46
476 477 1.483316 CGTATCACTATTTGCGCGGA 58.517 50.000 8.83 0.00 0.00 5.54
477 478 1.189446 CGTATCACTATTTGCGCGGAC 59.811 52.381 8.83 0.00 0.00 4.79
478 479 2.470821 GTATCACTATTTGCGCGGACT 58.529 47.619 8.83 0.00 0.00 3.85
479 480 2.024176 ATCACTATTTGCGCGGACTT 57.976 45.000 8.83 0.00 0.00 3.01
480 481 1.803334 TCACTATTTGCGCGGACTTT 58.197 45.000 8.83 0.00 0.00 2.66
481 482 1.463056 TCACTATTTGCGCGGACTTTG 59.537 47.619 8.83 0.00 0.00 2.77
482 483 1.463056 CACTATTTGCGCGGACTTTGA 59.537 47.619 8.83 0.00 0.00 2.69
483 484 2.095853 CACTATTTGCGCGGACTTTGAT 59.904 45.455 8.83 0.00 0.00 2.57
484 485 2.095853 ACTATTTGCGCGGACTTTGATG 59.904 45.455 8.83 0.00 0.00 3.07
485 486 0.456653 ATTTGCGCGGACTTTGATGC 60.457 50.000 8.83 0.00 0.00 3.91
486 487 2.470801 TTTGCGCGGACTTTGATGCC 62.471 55.000 8.83 0.00 0.00 4.40
487 488 3.430862 GCGCGGACTTTGATGCCA 61.431 61.111 8.83 0.00 0.00 4.92
488 489 2.764314 GCGCGGACTTTGATGCCAT 61.764 57.895 8.83 0.00 0.00 4.40
489 490 1.063006 CGCGGACTTTGATGCCATG 59.937 57.895 0.00 0.00 0.00 3.66
490 491 1.647545 CGCGGACTTTGATGCCATGT 61.648 55.000 0.00 0.00 0.00 3.21
491 492 1.378531 GCGGACTTTGATGCCATGTA 58.621 50.000 0.00 0.00 0.00 2.29
492 493 1.742831 GCGGACTTTGATGCCATGTAA 59.257 47.619 0.00 0.00 0.00 2.41
493 494 2.223340 GCGGACTTTGATGCCATGTAAG 60.223 50.000 0.00 0.00 0.00 2.34
494 495 3.009723 CGGACTTTGATGCCATGTAAGT 58.990 45.455 1.76 1.76 0.00 2.24
495 496 3.440173 CGGACTTTGATGCCATGTAAGTT 59.560 43.478 3.38 0.00 0.00 2.66
496 497 4.082787 CGGACTTTGATGCCATGTAAGTTT 60.083 41.667 3.38 0.00 0.00 2.66
497 498 5.564651 CGGACTTTGATGCCATGTAAGTTTT 60.565 40.000 3.38 0.00 0.00 2.43
498 499 6.348950 CGGACTTTGATGCCATGTAAGTTTTA 60.349 38.462 3.38 0.00 0.00 1.52
499 500 7.029563 GGACTTTGATGCCATGTAAGTTTTAG 58.970 38.462 3.38 0.00 0.00 1.85
500 501 6.924111 ACTTTGATGCCATGTAAGTTTTAGG 58.076 36.000 0.00 0.00 0.00 2.69
501 502 6.493458 ACTTTGATGCCATGTAAGTTTTAGGT 59.507 34.615 0.00 0.00 0.00 3.08
502 503 6.909550 TTGATGCCATGTAAGTTTTAGGTT 57.090 33.333 0.00 0.00 0.00 3.50
503 504 6.909550 TGATGCCATGTAAGTTTTAGGTTT 57.090 33.333 0.00 0.00 0.00 3.27
504 505 6.919721 TGATGCCATGTAAGTTTTAGGTTTC 58.080 36.000 0.00 0.00 0.00 2.78
505 506 5.365403 TGCCATGTAAGTTTTAGGTTTCG 57.635 39.130 0.00 0.00 0.00 3.46
506 507 4.163552 GCCATGTAAGTTTTAGGTTTCGC 58.836 43.478 0.00 0.00 0.00 4.70
507 508 4.399978 CCATGTAAGTTTTAGGTTTCGCG 58.600 43.478 0.00 0.00 0.00 5.87
508 509 4.083696 CCATGTAAGTTTTAGGTTTCGCGT 60.084 41.667 5.77 0.00 0.00 6.01
509 510 5.445845 CATGTAAGTTTTAGGTTTCGCGTT 58.554 37.500 5.77 0.00 0.00 4.84
510 511 6.347563 CCATGTAAGTTTTAGGTTTCGCGTTA 60.348 38.462 5.77 0.00 0.00 3.18
511 512 6.214205 TGTAAGTTTTAGGTTTCGCGTTAG 57.786 37.500 5.77 0.00 0.00 2.34
512 513 5.982516 TGTAAGTTTTAGGTTTCGCGTTAGA 59.017 36.000 5.77 0.00 0.00 2.10
513 514 5.587033 AAGTTTTAGGTTTCGCGTTAGAG 57.413 39.130 5.77 0.00 0.00 2.43
514 515 4.874970 AGTTTTAGGTTTCGCGTTAGAGA 58.125 39.130 5.77 0.00 0.00 3.10
515 516 5.291971 AGTTTTAGGTTTCGCGTTAGAGAA 58.708 37.500 5.77 0.00 34.40 2.87
516 517 5.404667 AGTTTTAGGTTTCGCGTTAGAGAAG 59.595 40.000 5.77 0.00 37.47 2.85
517 518 4.771590 TTAGGTTTCGCGTTAGAGAAGA 57.228 40.909 5.77 0.00 37.47 2.87
518 519 3.655276 AGGTTTCGCGTTAGAGAAGAA 57.345 42.857 5.77 0.00 37.47 2.52
519 520 3.986277 AGGTTTCGCGTTAGAGAAGAAA 58.014 40.909 5.77 0.00 37.47 2.52
520 521 3.739810 AGGTTTCGCGTTAGAGAAGAAAC 59.260 43.478 5.77 5.85 45.65 2.78
521 522 4.703899 GTTTCGCGTTAGAGAAGAAACA 57.296 40.909 5.77 0.00 45.66 2.83
522 523 4.443586 GTTTCGCGTTAGAGAAGAAACAC 58.556 43.478 5.77 0.00 45.66 3.32
523 524 2.313234 TCGCGTTAGAGAAGAAACACG 58.687 47.619 5.77 0.00 33.64 4.49
524 525 2.489051 GCGTTAGAGAAGAAACACGC 57.511 50.000 0.00 0.00 45.25 5.34
527 528 3.978759 CGTTAGAGAAGAAACACGCATG 58.021 45.455 0.00 0.00 0.00 4.06
528 529 3.181530 CGTTAGAGAAGAAACACGCATGG 60.182 47.826 0.00 0.00 0.00 3.66
529 530 2.550830 AGAGAAGAAACACGCATGGT 57.449 45.000 0.00 0.00 0.00 3.55
623 624 2.123897 AACCTGGCGTTTGCACCT 60.124 55.556 0.00 0.00 45.35 4.00
647 648 3.457484 CAGCACATGCCCCAACAA 58.543 55.556 0.00 0.00 43.38 2.83
662 663 3.081804 CCAACAACTTATCCACCTCACC 58.918 50.000 0.00 0.00 0.00 4.02
747 748 9.191995 CCTACTCGCACAAATAAAATTCTTTTT 57.808 29.630 0.00 0.00 38.56 1.94
779 790 6.295719 TCCGAAGAAGAAAATACCTAGCTT 57.704 37.500 0.00 0.00 0.00 3.74
836 847 1.891919 ATCGCACACACACCACACC 60.892 57.895 0.00 0.00 0.00 4.16
865 876 4.383173 CCTTGTTGTCTTTTACCTACCGT 58.617 43.478 0.00 0.00 0.00 4.83
985 1005 0.321122 CGAGAAGGAACAGCAAGGCT 60.321 55.000 0.00 0.00 40.77 4.58
991 1011 1.208293 AGGAACAGCAAGGCTAGCTAC 59.792 52.381 15.72 0.00 41.14 3.58
992 1012 1.066143 GGAACAGCAAGGCTAGCTACA 60.066 52.381 15.72 0.00 41.14 2.74
993 1013 2.003301 GAACAGCAAGGCTAGCTACAC 58.997 52.381 15.72 2.45 41.14 2.90
995 1015 1.347707 ACAGCAAGGCTAGCTACACAA 59.652 47.619 15.72 0.00 41.14 3.33
1640 1662 3.623806 CACCACATGCCATGCCAT 58.376 55.556 4.17 0.00 0.00 4.40
1641 1663 1.142965 CACCACATGCCATGCCATG 59.857 57.895 14.80 14.80 46.19 3.66
1642 1664 2.108157 CCACATGCCATGCCATGC 59.892 61.111 16.19 0.42 44.98 4.06
1643 1665 2.108157 CACATGCCATGCCATGCC 59.892 61.111 16.19 0.00 44.98 4.40
1644 1666 2.042333 ACATGCCATGCCATGCCT 60.042 55.556 16.19 0.00 44.98 4.75
1645 1667 1.687840 ACATGCCATGCCATGCCTT 60.688 52.632 16.19 0.00 44.98 4.35
1664 1686 1.821216 TCGGGCCACAGAATTCTTTC 58.179 50.000 4.86 0.00 0.00 2.62
1667 1689 1.740025 GGGCCACAGAATTCTTTCGAG 59.260 52.381 4.86 0.00 36.93 4.04
1766 1789 4.322349 GGATAGATCGTCCAAATGAGGAGG 60.322 50.000 13.41 0.00 40.91 4.30
2146 2169 7.741785 TCCTATACGATGAACAAAATGGGTAT 58.258 34.615 0.00 0.00 0.00 2.73
2179 2202 9.621629 ACTCCTTTATCCTAGATATATCGTCTG 57.378 37.037 7.08 0.00 0.00 3.51
2218 2243 9.997172 AGGAGGATAGTACATATGAATGTCATA 57.003 33.333 10.38 0.65 42.92 2.15
2269 2294 3.995705 GTGCTGCCATGATGCTTTAAAAA 59.004 39.130 0.00 0.00 0.00 1.94
2324 2582 1.924524 CCGTAGGCGTAAATGTGAGTG 59.075 52.381 0.00 0.00 46.14 3.51
2355 2613 2.667874 TGGCGCTGCAATTGACGA 60.668 55.556 10.34 0.00 0.00 4.20
2357 2615 2.099062 GCGCTGCAATTGACGAGG 59.901 61.111 10.34 0.00 0.00 4.63
2507 2767 1.977009 GTGGCCCCAACAGTAAGCC 60.977 63.158 0.00 0.00 44.13 4.35
2631 2911 5.800941 GTCTTGTAGTACAAATCACCTCTCG 59.199 44.000 16.26 1.89 37.69 4.04
2642 2922 0.108186 CACCTCTCGTTGGCAGCATA 60.108 55.000 1.39 0.00 0.00 3.14
2707 2990 0.400594 ACTACTCTGGGTTTGGGTGC 59.599 55.000 0.00 0.00 0.00 5.01
2711 2994 0.111253 CTCTGGGTTTGGGTGCTTCT 59.889 55.000 0.00 0.00 0.00 2.85
2721 3004 1.296715 GGTGCTTCTGTCCGGTGAT 59.703 57.895 0.00 0.00 0.00 3.06
2734 3027 0.740737 CGGTGATGGCATCCCTTTTC 59.259 55.000 23.92 7.89 0.00 2.29
2860 3157 1.658114 GTCTTTTGGGGCGGTGAAC 59.342 57.895 0.00 0.00 0.00 3.18
2884 3181 0.391661 CACTGAGGCTGGCGTATGTT 60.392 55.000 0.00 0.00 0.00 2.71
2950 3247 1.405661 GCTCCACCTAGTTTCCTTCCG 60.406 57.143 0.00 0.00 0.00 4.30
3013 3310 2.217038 GGGTGTCCTCCAGCACTCA 61.217 63.158 0.00 0.00 43.50 3.41
3328 3966 6.833416 GGATGATCAGGTAGAGCACTATCTAT 59.167 42.308 3.45 0.00 46.85 1.98
3330 3968 7.695480 TGATCAGGTAGAGCACTATCTATTC 57.305 40.000 3.45 5.06 37.82 1.75
3352 3995 4.025401 GCACGCTCCAAACCACCG 62.025 66.667 0.00 0.00 0.00 4.94
3547 4198 6.656902 ACAAGTTATCATCCATGTCATCTGT 58.343 36.000 0.00 0.00 0.00 3.41
3556 4207 4.445453 TCCATGTCATCTGTATGCAAGAC 58.555 43.478 0.00 0.00 32.76 3.01
3688 4340 1.337071 AGCTGCATATGCGTAGTACGT 59.663 47.619 22.81 7.73 44.73 3.57
3690 4342 2.051423 CTGCATATGCGTAGTACGTGG 58.949 52.381 22.81 9.91 44.73 4.94
3691 4343 1.406180 TGCATATGCGTAGTACGTGGT 59.594 47.619 22.81 12.02 44.73 4.16
3698 4370 1.298157 CGTAGTACGTGGTCCGGTCA 61.298 60.000 14.62 0.00 42.24 4.02
3823 4499 0.320073 CCAACGTCGCCACCTTTCTA 60.320 55.000 0.00 0.00 0.00 2.10
3926 4609 5.767168 ACTCTTGCTTTCTATCTTGTTGCTT 59.233 36.000 0.00 0.00 0.00 3.91
3952 4635 1.134280 CCGATGTGAATCCTCAAGCCT 60.134 52.381 0.00 0.00 31.88 4.58
3969 4652 3.935315 AGCCTGAATGATCATATGTCGG 58.065 45.455 9.04 8.09 34.37 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.539901 TACCGCTCCTCCTCCTATGC 60.540 60.000 0.00 0.00 0.00 3.14
2 3 1.249407 GTACCGCTCCTCCTCCTATG 58.751 60.000 0.00 0.00 0.00 2.23
6 7 1.516423 GTTGTACCGCTCCTCCTCC 59.484 63.158 0.00 0.00 0.00 4.30
7 8 0.971447 AGGTTGTACCGCTCCTCCTC 60.971 60.000 0.00 0.00 44.90 3.71
8 9 0.971447 GAGGTTGTACCGCTCCTCCT 60.971 60.000 9.92 0.00 44.90 3.69
9 10 1.516423 GAGGTTGTACCGCTCCTCC 59.484 63.158 9.92 0.00 44.90 4.30
10 11 1.139095 CGAGGTTGTACCGCTCCTC 59.861 63.158 10.63 10.63 44.90 3.71
11 12 3.003113 GCGAGGTTGTACCGCTCCT 62.003 63.158 6.25 1.37 44.90 3.69
13 14 2.508663 GGCGAGGTTGTACCGCTC 60.509 66.667 12.14 1.21 44.90 5.03
14 15 4.078516 GGGCGAGGTTGTACCGCT 62.079 66.667 12.14 0.00 44.90 5.52
15 16 4.078516 AGGGCGAGGTTGTACCGC 62.079 66.667 5.06 5.06 44.90 5.68
16 17 1.597797 TACAGGGCGAGGTTGTACCG 61.598 60.000 0.00 0.00 44.90 4.02
17 18 0.108472 GTACAGGGCGAGGTTGTACC 60.108 60.000 3.31 0.00 40.62 3.34
18 19 0.457337 CGTACAGGGCGAGGTTGTAC 60.457 60.000 4.40 4.40 42.19 2.90
19 20 1.885157 CGTACAGGGCGAGGTTGTA 59.115 57.895 0.00 0.00 0.00 2.41
20 21 2.654877 CGTACAGGGCGAGGTTGT 59.345 61.111 0.00 0.00 0.00 3.32
21 22 2.813908 GCGTACAGGGCGAGGTTG 60.814 66.667 0.00 0.00 0.00 3.77
22 23 4.078516 GGCGTACAGGGCGAGGTT 62.079 66.667 0.00 0.00 0.00 3.50
39 40 3.300667 GAACGAAGTGCAGCTGCCG 62.301 63.158 34.64 30.09 45.00 5.69
40 41 2.558313 GAACGAAGTGCAGCTGCC 59.442 61.111 34.64 24.89 45.00 4.85
41 42 1.630244 ATCGAACGAAGTGCAGCTGC 61.630 55.000 31.89 31.89 45.00 5.25
42 43 0.792640 AATCGAACGAAGTGCAGCTG 59.207 50.000 10.11 10.11 45.00 4.24
43 44 1.071605 GAATCGAACGAAGTGCAGCT 58.928 50.000 0.12 0.00 45.00 4.24
44 45 0.246912 CGAATCGAACGAAGTGCAGC 60.247 55.000 0.00 0.00 45.00 5.25
45 46 0.366871 CCGAATCGAACGAAGTGCAG 59.633 55.000 3.36 0.00 45.00 4.41
46 47 1.011968 CCCGAATCGAACGAAGTGCA 61.012 55.000 3.36 0.00 45.00 4.57
47 48 1.708027 CCCGAATCGAACGAAGTGC 59.292 57.895 3.36 0.00 45.00 4.40
48 49 1.693083 GGCCCGAATCGAACGAAGTG 61.693 60.000 3.36 4.26 45.00 3.16
50 51 2.514013 CGGCCCGAATCGAACGAAG 61.514 63.158 3.36 8.37 0.00 3.79
51 52 2.507547 CGGCCCGAATCGAACGAA 60.508 61.111 3.36 0.00 0.00 3.85
53 54 3.761445 TAGCGGCCCGAATCGAACG 62.761 63.158 7.68 6.72 0.00 3.95
54 55 2.105528 TAGCGGCCCGAATCGAAC 59.894 61.111 7.68 0.00 0.00 3.95
55 56 2.105528 GTAGCGGCCCGAATCGAA 59.894 61.111 7.68 0.00 0.00 3.71
56 57 4.260355 CGTAGCGGCCCGAATCGA 62.260 66.667 7.68 0.00 0.00 3.59
57 58 3.553437 ATCGTAGCGGCCCGAATCG 62.553 63.158 7.68 7.68 36.57 3.34
58 59 1.733399 GATCGTAGCGGCCCGAATC 60.733 63.158 7.68 9.98 36.57 2.52
59 60 1.816863 ATGATCGTAGCGGCCCGAAT 61.817 55.000 7.68 0.00 36.57 3.34
60 61 1.174078 TATGATCGTAGCGGCCCGAA 61.174 55.000 7.68 0.00 36.57 4.30
61 62 1.174078 TTATGATCGTAGCGGCCCGA 61.174 55.000 7.68 13.59 37.51 5.14
62 63 0.732880 CTTATGATCGTAGCGGCCCG 60.733 60.000 0.00 0.00 0.00 6.13
63 64 0.317479 ACTTATGATCGTAGCGGCCC 59.683 55.000 0.00 0.00 0.00 5.80
64 65 2.059541 GAACTTATGATCGTAGCGGCC 58.940 52.381 0.00 0.00 0.00 6.13
65 66 1.714460 CGAACTTATGATCGTAGCGGC 59.286 52.381 0.00 0.00 34.46 6.53
66 67 2.316792 CCGAACTTATGATCGTAGCGG 58.683 52.381 7.37 10.91 36.87 5.52
67 68 1.714460 GCCGAACTTATGATCGTAGCG 59.286 52.381 7.37 0.00 36.87 4.26
68 69 2.059541 GGCCGAACTTATGATCGTAGC 58.940 52.381 7.37 4.81 36.87 3.58
69 70 2.673833 GGGCCGAACTTATGATCGTAG 58.326 52.381 0.00 0.00 36.87 3.51
70 71 1.001048 CGGGCCGAACTTATGATCGTA 60.001 52.381 24.41 0.00 36.87 3.43
71 72 0.249322 CGGGCCGAACTTATGATCGT 60.249 55.000 24.41 0.00 36.87 3.73
72 73 0.249322 ACGGGCCGAACTTATGATCG 60.249 55.000 35.78 0.30 38.06 3.69
73 74 1.499049 GACGGGCCGAACTTATGATC 58.501 55.000 35.78 12.65 0.00 2.92
74 75 0.106149 GGACGGGCCGAACTTATGAT 59.894 55.000 35.78 6.20 0.00 2.45
75 76 1.259142 TGGACGGGCCGAACTTATGA 61.259 55.000 35.78 5.22 40.66 2.15
76 77 0.179056 ATGGACGGGCCGAACTTATG 60.179 55.000 35.78 0.00 40.66 1.90
77 78 0.179056 CATGGACGGGCCGAACTTAT 60.179 55.000 35.78 19.05 40.66 1.73
78 79 1.219664 CATGGACGGGCCGAACTTA 59.780 57.895 35.78 17.80 40.66 2.24
79 80 2.046314 CATGGACGGGCCGAACTT 60.046 61.111 35.78 18.90 40.66 2.66
80 81 3.310860 GACATGGACGGGCCGAACT 62.311 63.158 35.78 10.92 40.66 3.01
81 82 2.818274 GACATGGACGGGCCGAAC 60.818 66.667 35.78 24.12 40.66 3.95
82 83 4.090588 GGACATGGACGGGCCGAA 62.091 66.667 35.78 18.10 40.66 4.30
84 85 4.175337 ATGGACATGGACGGGCCG 62.175 66.667 27.06 27.06 40.66 6.13
85 86 2.203209 GATGGACATGGACGGGCC 60.203 66.667 0.00 0.00 37.10 5.80
86 87 2.588877 CGATGGACATGGACGGGC 60.589 66.667 0.00 0.00 0.00 6.13
87 88 1.521457 CACGATGGACATGGACGGG 60.521 63.158 0.00 0.00 0.00 5.28
88 89 1.521457 CCACGATGGACATGGACGG 60.521 63.158 0.00 0.00 40.96 4.79
89 90 1.515487 TCCACGATGGACATGGACG 59.485 57.895 0.00 0.00 42.67 4.79
97 98 0.544357 AAGGTGAGGTCCACGATGGA 60.544 55.000 3.02 3.02 45.98 3.41
98 99 0.108138 GAAGGTGAGGTCCACGATGG 60.108 60.000 0.00 0.00 46.62 3.51
99 100 0.608130 TGAAGGTGAGGTCCACGATG 59.392 55.000 0.00 0.00 46.62 3.84
100 101 1.208052 CATGAAGGTGAGGTCCACGAT 59.792 52.381 0.00 0.00 46.62 3.73
101 102 0.608130 CATGAAGGTGAGGTCCACGA 59.392 55.000 0.00 0.00 46.62 4.35
102 103 0.391661 CCATGAAGGTGAGGTCCACG 60.392 60.000 0.00 0.00 46.62 4.94
103 104 0.035056 CCCATGAAGGTGAGGTCCAC 60.035 60.000 0.00 0.00 44.95 4.02
104 105 1.207488 CCCCATGAAGGTGAGGTCCA 61.207 60.000 0.00 0.00 34.66 4.02
105 106 0.914417 TCCCCATGAAGGTGAGGTCC 60.914 60.000 0.00 0.00 34.66 4.46
106 107 0.253327 GTCCCCATGAAGGTGAGGTC 59.747 60.000 0.00 0.00 34.66 3.85
107 108 1.553690 CGTCCCCATGAAGGTGAGGT 61.554 60.000 0.00 0.00 34.66 3.85
108 109 1.221840 CGTCCCCATGAAGGTGAGG 59.778 63.158 0.00 0.00 34.66 3.86
109 110 0.324943 AACGTCCCCATGAAGGTGAG 59.675 55.000 0.00 0.00 34.66 3.51
110 111 0.323629 GAACGTCCCCATGAAGGTGA 59.676 55.000 0.00 0.00 34.66 4.02
111 112 0.036164 TGAACGTCCCCATGAAGGTG 59.964 55.000 0.00 0.00 34.66 4.00
112 113 0.324943 CTGAACGTCCCCATGAAGGT 59.675 55.000 0.00 0.00 34.66 3.50
113 114 0.392998 CCTGAACGTCCCCATGAAGG 60.393 60.000 0.00 0.00 37.03 3.46
114 115 1.026718 GCCTGAACGTCCCCATGAAG 61.027 60.000 0.00 0.00 0.00 3.02
115 116 1.002624 GCCTGAACGTCCCCATGAA 60.003 57.895 0.00 0.00 0.00 2.57
116 117 2.668632 GCCTGAACGTCCCCATGA 59.331 61.111 0.00 0.00 0.00 3.07
117 118 2.438434 GGCCTGAACGTCCCCATG 60.438 66.667 0.00 0.00 0.00 3.66
118 119 2.933287 TGGCCTGAACGTCCCCAT 60.933 61.111 3.32 0.00 0.00 4.00
119 120 3.948719 GTGGCCTGAACGTCCCCA 61.949 66.667 3.32 0.00 0.00 4.96
121 122 3.524648 TTCGTGGCCTGAACGTCCC 62.525 63.158 13.17 0.00 41.70 4.46
122 123 2.029964 TTCGTGGCCTGAACGTCC 59.970 61.111 13.17 0.00 41.70 4.79
123 124 3.241177 GTTCGTGGCCTGAACGTC 58.759 61.111 20.62 9.80 41.70 4.34
126 127 0.534203 TTGGAGTTCGTGGCCTGAAC 60.534 55.000 25.09 25.09 44.72 3.18
127 128 0.400213 ATTGGAGTTCGTGGCCTGAA 59.600 50.000 3.32 5.49 0.00 3.02
128 129 0.321564 CATTGGAGTTCGTGGCCTGA 60.322 55.000 3.32 0.00 0.00 3.86
129 130 0.321564 TCATTGGAGTTCGTGGCCTG 60.322 55.000 3.32 0.00 0.00 4.85
130 131 0.036010 CTCATTGGAGTTCGTGGCCT 60.036 55.000 3.32 0.00 36.36 5.19
131 132 1.026718 CCTCATTGGAGTTCGTGGCC 61.027 60.000 0.00 0.00 39.64 5.36
132 133 0.036388 TCCTCATTGGAGTTCGTGGC 60.036 55.000 0.00 0.00 40.56 5.01
141 142 5.782331 CCATATCCTACTCTTCCTCATTGGA 59.218 44.000 0.00 0.00 44.51 3.53
142 143 5.046014 CCCATATCCTACTCTTCCTCATTGG 60.046 48.000 0.00 0.00 37.10 3.16
143 144 5.782331 TCCCATATCCTACTCTTCCTCATTG 59.218 44.000 0.00 0.00 0.00 2.82
144 145 5.982391 TCCCATATCCTACTCTTCCTCATT 58.018 41.667 0.00 0.00 0.00 2.57
145 146 5.317262 TCTCCCATATCCTACTCTTCCTCAT 59.683 44.000 0.00 0.00 0.00 2.90
146 147 4.670247 TCTCCCATATCCTACTCTTCCTCA 59.330 45.833 0.00 0.00 0.00 3.86
147 148 5.014202 GTCTCCCATATCCTACTCTTCCTC 58.986 50.000 0.00 0.00 0.00 3.71
148 149 4.507691 CGTCTCCCATATCCTACTCTTCCT 60.508 50.000 0.00 0.00 0.00 3.36
149 150 3.759618 CGTCTCCCATATCCTACTCTTCC 59.240 52.174 0.00 0.00 0.00 3.46
150 151 3.759618 CCGTCTCCCATATCCTACTCTTC 59.240 52.174 0.00 0.00 0.00 2.87
151 152 3.398292 TCCGTCTCCCATATCCTACTCTT 59.602 47.826 0.00 0.00 0.00 2.85
152 153 2.987437 TCCGTCTCCCATATCCTACTCT 59.013 50.000 0.00 0.00 0.00 3.24
153 154 3.349022 CTCCGTCTCCCATATCCTACTC 58.651 54.545 0.00 0.00 0.00 2.59
154 155 2.041891 CCTCCGTCTCCCATATCCTACT 59.958 54.545 0.00 0.00 0.00 2.57
155 156 2.448453 CCTCCGTCTCCCATATCCTAC 58.552 57.143 0.00 0.00 0.00 3.18
156 157 1.272536 GCCTCCGTCTCCCATATCCTA 60.273 57.143 0.00 0.00 0.00 2.94
157 158 0.543174 GCCTCCGTCTCCCATATCCT 60.543 60.000 0.00 0.00 0.00 3.24
158 159 0.832135 TGCCTCCGTCTCCCATATCC 60.832 60.000 0.00 0.00 0.00 2.59
159 160 1.205893 GATGCCTCCGTCTCCCATATC 59.794 57.143 0.00 0.00 0.00 1.63
160 161 1.270907 GATGCCTCCGTCTCCCATAT 58.729 55.000 0.00 0.00 0.00 1.78
161 162 1.179174 CGATGCCTCCGTCTCCCATA 61.179 60.000 0.00 0.00 0.00 2.74
162 163 2.502492 CGATGCCTCCGTCTCCCAT 61.502 63.158 0.00 0.00 0.00 4.00
163 164 3.147595 CGATGCCTCCGTCTCCCA 61.148 66.667 0.00 0.00 0.00 4.37
164 165 3.917760 CCGATGCCTCCGTCTCCC 61.918 72.222 0.00 0.00 0.00 4.30
165 166 3.148279 ACCGATGCCTCCGTCTCC 61.148 66.667 0.00 0.00 0.00 3.71
166 167 2.105128 CACCGATGCCTCCGTCTC 59.895 66.667 0.00 0.00 0.00 3.36
167 168 2.680352 ACACCGATGCCTCCGTCT 60.680 61.111 0.00 0.00 0.00 4.18
168 169 2.202756 GACACCGATGCCTCCGTC 60.203 66.667 0.00 0.00 0.00 4.79
169 170 2.680352 AGACACCGATGCCTCCGT 60.680 61.111 0.00 0.00 0.00 4.69
170 171 2.021068 ATGAGACACCGATGCCTCCG 62.021 60.000 0.00 0.00 0.00 4.63
171 172 0.531532 CATGAGACACCGATGCCTCC 60.532 60.000 0.00 0.00 0.00 4.30
172 173 0.176680 ACATGAGACACCGATGCCTC 59.823 55.000 0.00 0.00 0.00 4.70
173 174 0.176680 GACATGAGACACCGATGCCT 59.823 55.000 0.00 0.00 0.00 4.75
174 175 0.176680 AGACATGAGACACCGATGCC 59.823 55.000 0.00 0.00 0.00 4.40
175 176 2.099921 AGTAGACATGAGACACCGATGC 59.900 50.000 0.00 0.00 0.00 3.91
176 177 3.629855 AGAGTAGACATGAGACACCGATG 59.370 47.826 0.00 0.00 0.00 3.84
177 178 3.892284 AGAGTAGACATGAGACACCGAT 58.108 45.455 0.00 0.00 0.00 4.18
178 179 3.351794 AGAGTAGACATGAGACACCGA 57.648 47.619 0.00 0.00 0.00 4.69
179 180 3.181495 GGAAGAGTAGACATGAGACACCG 60.181 52.174 0.00 0.00 0.00 4.94
180 181 4.020543 AGGAAGAGTAGACATGAGACACC 58.979 47.826 0.00 0.00 0.00 4.16
181 182 5.406649 CAAGGAAGAGTAGACATGAGACAC 58.593 45.833 0.00 0.00 0.00 3.67
182 183 4.081972 GCAAGGAAGAGTAGACATGAGACA 60.082 45.833 0.00 0.00 0.00 3.41
183 184 4.429108 GCAAGGAAGAGTAGACATGAGAC 58.571 47.826 0.00 0.00 0.00 3.36
184 185 3.449018 GGCAAGGAAGAGTAGACATGAGA 59.551 47.826 0.00 0.00 0.00 3.27
185 186 3.736433 CGGCAAGGAAGAGTAGACATGAG 60.736 52.174 0.00 0.00 0.00 2.90
186 187 2.166459 CGGCAAGGAAGAGTAGACATGA 59.834 50.000 0.00 0.00 0.00 3.07
187 188 2.544685 CGGCAAGGAAGAGTAGACATG 58.455 52.381 0.00 0.00 0.00 3.21
188 189 1.482593 CCGGCAAGGAAGAGTAGACAT 59.517 52.381 0.00 0.00 45.00 3.06
189 190 0.895530 CCGGCAAGGAAGAGTAGACA 59.104 55.000 0.00 0.00 45.00 3.41
190 191 3.742983 CCGGCAAGGAAGAGTAGAC 57.257 57.895 0.00 0.00 45.00 2.59
208 209 3.591254 AAGTGAAGCCGCGGGTCTC 62.591 63.158 32.52 26.94 0.00 3.36
209 210 3.591254 GAAGTGAAGCCGCGGGTCT 62.591 63.158 32.52 20.86 0.00 3.85
210 211 3.119096 GAAGTGAAGCCGCGGGTC 61.119 66.667 32.52 23.03 0.00 4.46
211 212 4.699522 GGAAGTGAAGCCGCGGGT 62.700 66.667 26.97 26.97 0.00 5.28
212 213 4.697756 TGGAAGTGAAGCCGCGGG 62.698 66.667 29.38 8.95 0.00 6.13
213 214 3.121030 CTGGAAGTGAAGCCGCGG 61.121 66.667 24.05 24.05 0.00 6.46
214 215 3.121030 CCTGGAAGTGAAGCCGCG 61.121 66.667 0.00 0.00 0.00 6.46
215 216 2.747855 CCCTGGAAGTGAAGCCGC 60.748 66.667 0.00 0.00 0.00 6.53
216 217 2.045926 CCCCTGGAAGTGAAGCCG 60.046 66.667 0.00 0.00 0.00 5.52
217 218 2.361737 GCCCCTGGAAGTGAAGCC 60.362 66.667 0.00 0.00 0.00 4.35
218 219 1.377856 GAGCCCCTGGAAGTGAAGC 60.378 63.158 0.00 0.00 0.00 3.86
219 220 0.622665 ATGAGCCCCTGGAAGTGAAG 59.377 55.000 0.00 0.00 0.00 3.02
220 221 0.329261 CATGAGCCCCTGGAAGTGAA 59.671 55.000 0.00 0.00 0.00 3.18
221 222 1.565390 CCATGAGCCCCTGGAAGTGA 61.565 60.000 0.00 0.00 34.24 3.41
222 223 1.077212 CCATGAGCCCCTGGAAGTG 60.077 63.158 0.00 0.00 34.24 3.16
223 224 2.988839 GCCATGAGCCCCTGGAAGT 61.989 63.158 0.00 0.00 34.24 3.01
224 225 2.123982 GCCATGAGCCCCTGGAAG 60.124 66.667 0.00 0.00 34.24 3.46
233 234 3.285215 CATCCAGCGGCCATGAGC 61.285 66.667 2.24 0.00 42.60 4.26
234 235 2.593725 CCATCCAGCGGCCATGAG 60.594 66.667 2.24 0.00 0.00 2.90
235 236 3.089217 TCCATCCAGCGGCCATGA 61.089 61.111 2.24 0.00 0.00 3.07
236 237 2.903855 GTCCATCCAGCGGCCATG 60.904 66.667 2.24 0.00 0.00 3.66
237 238 3.410628 TGTCCATCCAGCGGCCAT 61.411 61.111 2.24 0.00 0.00 4.40
238 239 4.408821 GTGTCCATCCAGCGGCCA 62.409 66.667 2.24 0.00 0.00 5.36
243 244 3.704231 ATGGCCGTGTCCATCCAGC 62.704 63.158 0.00 0.00 43.00 4.85
244 245 1.820906 CATGGCCGTGTCCATCCAG 60.821 63.158 17.42 0.00 44.63 3.86
245 246 2.271821 CATGGCCGTGTCCATCCA 59.728 61.111 17.42 0.00 44.63 3.41
246 247 2.516930 CCATGGCCGTGTCCATCC 60.517 66.667 23.39 0.00 44.63 3.51
247 248 2.516930 CCCATGGCCGTGTCCATC 60.517 66.667 23.39 0.00 44.63 3.51
250 251 4.041762 TTCCCCATGGCCGTGTCC 62.042 66.667 23.39 0.00 0.00 4.02
251 252 2.750237 GTTCCCCATGGCCGTGTC 60.750 66.667 23.39 5.11 0.00 3.67
252 253 3.140073 TTGTTCCCCATGGCCGTGT 62.140 57.895 23.39 0.00 0.00 4.49
253 254 2.282816 TTGTTCCCCATGGCCGTG 60.283 61.111 18.73 18.73 0.00 4.94
254 255 2.282887 GTTGTTCCCCATGGCCGT 60.283 61.111 6.09 0.00 0.00 5.68
255 256 1.876497 CTTGTTGTTCCCCATGGCCG 61.876 60.000 6.09 0.00 0.00 6.13
256 257 1.543944 CCTTGTTGTTCCCCATGGCC 61.544 60.000 6.09 0.00 0.00 5.36
257 258 0.541764 TCCTTGTTGTTCCCCATGGC 60.542 55.000 6.09 0.00 0.00 4.40
258 259 1.203050 AGTCCTTGTTGTTCCCCATGG 60.203 52.381 4.14 4.14 0.00 3.66
259 260 2.292828 AGTCCTTGTTGTTCCCCATG 57.707 50.000 0.00 0.00 0.00 3.66
260 261 2.597455 CAAGTCCTTGTTGTTCCCCAT 58.403 47.619 0.00 0.00 35.92 4.00
261 262 1.410932 CCAAGTCCTTGTTGTTCCCCA 60.411 52.381 6.31 0.00 38.85 4.96
262 263 1.133606 TCCAAGTCCTTGTTGTTCCCC 60.134 52.381 6.31 0.00 38.85 4.81
263 264 1.954382 GTCCAAGTCCTTGTTGTTCCC 59.046 52.381 6.31 0.00 38.85 3.97
264 265 1.602377 CGTCCAAGTCCTTGTTGTTCC 59.398 52.381 6.31 0.00 38.85 3.62
265 266 1.002792 GCGTCCAAGTCCTTGTTGTTC 60.003 52.381 6.31 0.00 38.85 3.18
266 267 1.021968 GCGTCCAAGTCCTTGTTGTT 58.978 50.000 6.31 0.00 38.85 2.83
267 268 0.818040 GGCGTCCAAGTCCTTGTTGT 60.818 55.000 6.31 0.00 38.85 3.32
268 269 1.841663 CGGCGTCCAAGTCCTTGTTG 61.842 60.000 0.00 0.00 38.85 3.33
269 270 1.597027 CGGCGTCCAAGTCCTTGTT 60.597 57.895 0.00 0.00 38.85 2.83
270 271 2.030562 CGGCGTCCAAGTCCTTGT 59.969 61.111 0.00 0.00 38.85 3.16
271 272 2.027625 GTCGGCGTCCAAGTCCTTG 61.028 63.158 6.85 0.00 40.13 3.61
272 273 2.342648 GTCGGCGTCCAAGTCCTT 59.657 61.111 6.85 0.00 0.00 3.36
273 274 4.052229 CGTCGGCGTCCAAGTCCT 62.052 66.667 6.85 0.00 0.00 3.85
274 275 3.562779 TTCGTCGGCGTCCAAGTCC 62.563 63.158 10.18 0.00 39.49 3.85
275 276 2.049802 TTCGTCGGCGTCCAAGTC 60.050 61.111 10.18 0.00 39.49 3.01
276 277 1.874345 ATCTTCGTCGGCGTCCAAGT 61.874 55.000 10.18 0.00 39.49 3.16
277 278 0.736325 AATCTTCGTCGGCGTCCAAG 60.736 55.000 10.18 6.11 39.49 3.61
278 279 0.320073 AAATCTTCGTCGGCGTCCAA 60.320 50.000 10.18 0.00 39.49 3.53
279 280 0.527113 TAAATCTTCGTCGGCGTCCA 59.473 50.000 10.18 0.00 39.49 4.02
280 281 1.197910 CTAAATCTTCGTCGGCGTCC 58.802 55.000 10.18 0.00 39.49 4.79
281 282 1.844962 GTCTAAATCTTCGTCGGCGTC 59.155 52.381 10.18 0.00 39.49 5.19
282 283 1.471684 AGTCTAAATCTTCGTCGGCGT 59.528 47.619 10.18 0.00 39.49 5.68
283 284 2.190325 AGTCTAAATCTTCGTCGGCG 57.810 50.000 1.15 1.15 39.92 6.46
284 285 3.066481 ACCTAGTCTAAATCTTCGTCGGC 59.934 47.826 0.00 0.00 0.00 5.54
285 286 4.897025 ACCTAGTCTAAATCTTCGTCGG 57.103 45.455 0.00 0.00 0.00 4.79
286 287 7.470900 AGTTAACCTAGTCTAAATCTTCGTCG 58.529 38.462 0.88 0.00 0.00 5.12
287 288 9.636879 AAAGTTAACCTAGTCTAAATCTTCGTC 57.363 33.333 0.88 0.00 0.00 4.20
288 289 9.636879 GAAAGTTAACCTAGTCTAAATCTTCGT 57.363 33.333 0.88 0.00 0.00 3.85
289 290 9.635520 TGAAAGTTAACCTAGTCTAAATCTTCG 57.364 33.333 0.88 0.00 0.00 3.79
295 296 9.895138 AGTGTTTGAAAGTTAACCTAGTCTAAA 57.105 29.630 0.88 0.00 0.00 1.85
296 297 9.895138 AAGTGTTTGAAAGTTAACCTAGTCTAA 57.105 29.630 0.88 0.00 0.00 2.10
297 298 9.895138 AAAGTGTTTGAAAGTTAACCTAGTCTA 57.105 29.630 0.88 0.00 0.00 2.59
298 299 8.803397 AAAGTGTTTGAAAGTTAACCTAGTCT 57.197 30.769 0.88 0.00 0.00 3.24
299 300 9.285770 CAAAAGTGTTTGAAAGTTAACCTAGTC 57.714 33.333 0.88 0.00 45.99 2.59
300 301 8.799367 ACAAAAGTGTTTGAAAGTTAACCTAGT 58.201 29.630 0.88 0.00 45.99 2.57
357 358 8.754080 TGATGATTTTTATTTAAACCGGACCAT 58.246 29.630 9.46 0.00 0.00 3.55
358 359 8.123639 TGATGATTTTTATTTAAACCGGACCA 57.876 30.769 9.46 0.00 0.00 4.02
359 360 9.030301 CATGATGATTTTTATTTAAACCGGACC 57.970 33.333 9.46 0.00 0.00 4.46
360 361 9.581099 ACATGATGATTTTTATTTAAACCGGAC 57.419 29.630 9.46 0.00 0.00 4.79
374 375 9.781633 TGATTTTCTTGGAAACATGATGATTTT 57.218 25.926 0.00 0.00 43.21 1.82
375 376 9.953565 ATGATTTTCTTGGAAACATGATGATTT 57.046 25.926 0.00 0.00 43.21 2.17
376 377 9.595823 GATGATTTTCTTGGAAACATGATGATT 57.404 29.630 0.00 0.00 43.21 2.57
377 378 8.202137 GGATGATTTTCTTGGAAACATGATGAT 58.798 33.333 0.00 0.00 43.21 2.45
378 379 7.549839 GGATGATTTTCTTGGAAACATGATGA 58.450 34.615 0.00 0.00 43.21 2.92
379 380 6.474427 CGGATGATTTTCTTGGAAACATGATG 59.526 38.462 0.00 0.00 43.21 3.07
380 381 6.406177 CCGGATGATTTTCTTGGAAACATGAT 60.406 38.462 0.00 0.00 43.21 2.45
381 382 5.105797 CCGGATGATTTTCTTGGAAACATGA 60.106 40.000 0.00 0.00 42.32 3.07
382 383 5.104374 CCGGATGATTTTCTTGGAAACATG 58.896 41.667 0.00 0.00 42.32 3.21
383 384 4.772100 ACCGGATGATTTTCTTGGAAACAT 59.228 37.500 9.46 0.00 42.32 2.71
384 385 4.148838 ACCGGATGATTTTCTTGGAAACA 58.851 39.130 9.46 0.00 39.83 2.83
385 386 4.783764 ACCGGATGATTTTCTTGGAAAC 57.216 40.909 9.46 0.00 0.00 2.78
386 387 5.069781 ACAAACCGGATGATTTTCTTGGAAA 59.930 36.000 9.46 0.00 0.00 3.13
387 388 4.586841 ACAAACCGGATGATTTTCTTGGAA 59.413 37.500 9.46 0.00 0.00 3.53
388 389 4.148838 ACAAACCGGATGATTTTCTTGGA 58.851 39.130 9.46 0.00 0.00 3.53
389 390 4.022416 TGACAAACCGGATGATTTTCTTGG 60.022 41.667 9.46 0.00 0.00 3.61
390 391 5.119931 TGACAAACCGGATGATTTTCTTG 57.880 39.130 9.46 0.00 0.00 3.02
391 392 4.827284 ACTGACAAACCGGATGATTTTCTT 59.173 37.500 9.46 0.00 0.00 2.52
392 393 4.216257 CACTGACAAACCGGATGATTTTCT 59.784 41.667 9.46 0.00 0.00 2.52
393 394 4.215399 TCACTGACAAACCGGATGATTTTC 59.785 41.667 9.46 0.98 0.00 2.29
394 395 4.141287 TCACTGACAAACCGGATGATTTT 58.859 39.130 9.46 0.00 0.00 1.82
395 396 3.750371 TCACTGACAAACCGGATGATTT 58.250 40.909 9.46 0.00 0.00 2.17
396 397 3.417069 TCACTGACAAACCGGATGATT 57.583 42.857 9.46 0.00 0.00 2.57
397 398 3.417069 TTCACTGACAAACCGGATGAT 57.583 42.857 9.46 0.00 0.00 2.45
398 399 2.920724 TTCACTGACAAACCGGATGA 57.079 45.000 9.46 0.00 0.00 2.92
399 400 3.825308 CATTTCACTGACAAACCGGATG 58.175 45.455 9.46 9.74 0.00 3.51
400 401 2.228822 GCATTTCACTGACAAACCGGAT 59.771 45.455 9.46 0.00 0.00 4.18
401 402 1.606668 GCATTTCACTGACAAACCGGA 59.393 47.619 9.46 0.00 0.00 5.14
402 403 1.662876 CGCATTTCACTGACAAACCGG 60.663 52.381 0.00 0.00 0.00 5.28
403 404 1.662876 CCGCATTTCACTGACAAACCG 60.663 52.381 0.00 0.00 0.00 4.44
404 405 1.335872 CCCGCATTTCACTGACAAACC 60.336 52.381 0.00 0.00 0.00 3.27
405 406 1.930371 GCCCGCATTTCACTGACAAAC 60.930 52.381 0.00 0.00 0.00 2.93
406 407 0.313672 GCCCGCATTTCACTGACAAA 59.686 50.000 0.00 0.00 0.00 2.83
407 408 0.821301 TGCCCGCATTTCACTGACAA 60.821 50.000 0.00 0.00 0.00 3.18
408 409 0.608856 ATGCCCGCATTTCACTGACA 60.609 50.000 0.00 0.00 31.82 3.58
409 410 0.527565 AATGCCCGCATTTCACTGAC 59.472 50.000 9.10 0.00 43.32 3.51
410 411 2.959967 AATGCCCGCATTTCACTGA 58.040 47.368 9.10 0.00 43.32 3.41
418 419 1.949525 GTGTATCTCAAATGCCCGCAT 59.050 47.619 0.00 0.00 38.46 4.73
419 420 1.339535 TGTGTATCTCAAATGCCCGCA 60.340 47.619 0.00 0.00 0.00 5.69
420 421 1.331756 CTGTGTATCTCAAATGCCCGC 59.668 52.381 0.00 0.00 0.00 6.13
421 422 2.632377 ACTGTGTATCTCAAATGCCCG 58.368 47.619 0.00 0.00 0.00 6.13
422 423 3.758554 ACAACTGTGTATCTCAAATGCCC 59.241 43.478 0.00 0.00 35.72 5.36
423 424 6.489675 CATACAACTGTGTATCTCAAATGCC 58.510 40.000 0.00 0.00 46.01 4.40
424 425 5.967674 GCATACAACTGTGTATCTCAAATGC 59.032 40.000 0.00 0.00 46.01 3.56
425 426 6.458751 GGGCATACAACTGTGTATCTCAAATG 60.459 42.308 0.00 0.00 46.01 2.32
426 427 5.590259 GGGCATACAACTGTGTATCTCAAAT 59.410 40.000 0.00 0.00 46.01 2.32
427 428 4.941263 GGGCATACAACTGTGTATCTCAAA 59.059 41.667 0.00 0.00 46.01 2.69
428 429 4.019771 TGGGCATACAACTGTGTATCTCAA 60.020 41.667 0.00 0.00 46.01 3.02
429 430 3.517500 TGGGCATACAACTGTGTATCTCA 59.482 43.478 0.00 0.00 46.01 3.27
430 431 4.122776 CTGGGCATACAACTGTGTATCTC 58.877 47.826 0.00 0.00 46.01 2.75
431 432 3.682718 GCTGGGCATACAACTGTGTATCT 60.683 47.826 0.00 0.00 46.01 1.98
432 433 2.614057 GCTGGGCATACAACTGTGTATC 59.386 50.000 0.00 0.00 46.01 2.24
434 435 1.628340 AGCTGGGCATACAACTGTGTA 59.372 47.619 0.00 0.00 44.29 2.90
435 436 0.401738 AGCTGGGCATACAACTGTGT 59.598 50.000 0.00 0.00 42.09 3.72
436 437 1.089920 GAGCTGGGCATACAACTGTG 58.910 55.000 0.00 0.00 0.00 3.66
437 438 0.035056 GGAGCTGGGCATACAACTGT 60.035 55.000 0.00 0.00 0.00 3.55
438 439 0.749454 GGGAGCTGGGCATACAACTG 60.749 60.000 0.00 0.00 0.00 3.16
439 440 1.609783 GGGAGCTGGGCATACAACT 59.390 57.895 0.00 0.00 0.00 3.16
440 441 1.819632 CGGGAGCTGGGCATACAAC 60.820 63.158 0.00 0.00 0.00 3.32
441 442 0.978667 TACGGGAGCTGGGCATACAA 60.979 55.000 0.00 0.00 0.00 2.41
442 443 0.762842 ATACGGGAGCTGGGCATACA 60.763 55.000 0.00 0.00 0.00 2.29
443 444 0.037232 GATACGGGAGCTGGGCATAC 60.037 60.000 0.00 0.00 0.00 2.39
444 445 0.471022 TGATACGGGAGCTGGGCATA 60.471 55.000 0.00 0.00 0.00 3.14
445 446 1.766059 TGATACGGGAGCTGGGCAT 60.766 57.895 0.00 0.00 0.00 4.40
446 447 2.364973 TGATACGGGAGCTGGGCA 60.365 61.111 0.00 0.00 0.00 5.36
447 448 1.113517 TAGTGATACGGGAGCTGGGC 61.114 60.000 0.00 0.00 0.00 5.36
448 449 1.633774 ATAGTGATACGGGAGCTGGG 58.366 55.000 0.00 0.00 0.00 4.45
449 450 3.393800 CAAATAGTGATACGGGAGCTGG 58.606 50.000 0.00 0.00 0.00 4.85
450 451 2.802816 GCAAATAGTGATACGGGAGCTG 59.197 50.000 0.00 0.00 0.00 4.24
451 452 2.545952 CGCAAATAGTGATACGGGAGCT 60.546 50.000 0.00 0.00 0.00 4.09
452 453 1.792949 CGCAAATAGTGATACGGGAGC 59.207 52.381 0.00 0.00 0.00 4.70
453 454 1.792949 GCGCAAATAGTGATACGGGAG 59.207 52.381 0.30 0.00 0.00 4.30
454 455 1.860676 GCGCAAATAGTGATACGGGA 58.139 50.000 0.30 0.00 0.00 5.14
455 456 0.506932 CGCGCAAATAGTGATACGGG 59.493 55.000 8.75 0.00 0.00 5.28
456 457 0.506932 CCGCGCAAATAGTGATACGG 59.493 55.000 8.75 0.00 33.85 4.02
457 458 1.189446 GTCCGCGCAAATAGTGATACG 59.811 52.381 8.75 0.00 0.00 3.06
458 459 2.470821 AGTCCGCGCAAATAGTGATAC 58.529 47.619 8.75 0.00 0.00 2.24
459 460 2.882927 AGTCCGCGCAAATAGTGATA 57.117 45.000 8.75 0.00 0.00 2.15
460 461 2.024176 AAGTCCGCGCAAATAGTGAT 57.976 45.000 8.75 0.00 0.00 3.06
461 462 1.463056 CAAAGTCCGCGCAAATAGTGA 59.537 47.619 8.75 0.00 0.00 3.41
462 463 1.463056 TCAAAGTCCGCGCAAATAGTG 59.537 47.619 8.75 0.00 0.00 2.74
463 464 1.803334 TCAAAGTCCGCGCAAATAGT 58.197 45.000 8.75 0.00 0.00 2.12
464 465 2.708514 CATCAAAGTCCGCGCAAATAG 58.291 47.619 8.75 0.00 0.00 1.73
465 466 1.202132 GCATCAAAGTCCGCGCAAATA 60.202 47.619 8.75 0.00 0.00 1.40
466 467 0.456653 GCATCAAAGTCCGCGCAAAT 60.457 50.000 8.75 0.00 0.00 2.32
467 468 1.081509 GCATCAAAGTCCGCGCAAA 60.082 52.632 8.75 0.00 0.00 3.68
468 469 2.560861 GCATCAAAGTCCGCGCAA 59.439 55.556 8.75 0.00 0.00 4.85
469 470 3.430862 GGCATCAAAGTCCGCGCA 61.431 61.111 8.75 0.00 0.00 6.09
470 471 2.764314 ATGGCATCAAAGTCCGCGC 61.764 57.895 0.00 0.00 0.00 6.86
471 472 1.063006 CATGGCATCAAAGTCCGCG 59.937 57.895 0.00 0.00 0.00 6.46
472 473 1.378531 TACATGGCATCAAAGTCCGC 58.621 50.000 0.00 0.00 0.00 5.54
473 474 3.009723 ACTTACATGGCATCAAAGTCCG 58.990 45.455 15.02 0.00 0.00 4.79
474 475 5.391312 AAACTTACATGGCATCAAAGTCC 57.609 39.130 19.06 0.00 30.37 3.85
475 476 7.029563 CCTAAAACTTACATGGCATCAAAGTC 58.970 38.462 19.06 0.00 30.37 3.01
476 477 6.493458 ACCTAAAACTTACATGGCATCAAAGT 59.507 34.615 15.02 15.02 31.94 2.66
477 478 6.924111 ACCTAAAACTTACATGGCATCAAAG 58.076 36.000 13.98 13.98 0.00 2.77
478 479 6.909550 ACCTAAAACTTACATGGCATCAAA 57.090 33.333 0.00 0.00 0.00 2.69
479 480 6.909550 AACCTAAAACTTACATGGCATCAA 57.090 33.333 0.00 0.00 0.00 2.57
480 481 6.348950 CGAAACCTAAAACTTACATGGCATCA 60.349 38.462 0.00 0.00 0.00 3.07
481 482 6.027749 CGAAACCTAAAACTTACATGGCATC 58.972 40.000 0.00 0.00 0.00 3.91
482 483 5.621329 GCGAAACCTAAAACTTACATGGCAT 60.621 40.000 0.00 0.00 0.00 4.40
483 484 4.320641 GCGAAACCTAAAACTTACATGGCA 60.321 41.667 0.00 0.00 0.00 4.92
484 485 4.163552 GCGAAACCTAAAACTTACATGGC 58.836 43.478 0.00 0.00 0.00 4.40
485 486 4.083696 ACGCGAAACCTAAAACTTACATGG 60.084 41.667 15.93 0.00 0.00 3.66
486 487 5.025986 ACGCGAAACCTAAAACTTACATG 57.974 39.130 15.93 0.00 0.00 3.21
487 488 5.678132 AACGCGAAACCTAAAACTTACAT 57.322 34.783 15.93 0.00 0.00 2.29
488 489 5.982516 TCTAACGCGAAACCTAAAACTTACA 59.017 36.000 15.93 0.00 0.00 2.41
489 490 6.363357 TCTCTAACGCGAAACCTAAAACTTAC 59.637 38.462 15.93 0.00 0.00 2.34
490 491 6.446318 TCTCTAACGCGAAACCTAAAACTTA 58.554 36.000 15.93 0.00 0.00 2.24
491 492 5.291971 TCTCTAACGCGAAACCTAAAACTT 58.708 37.500 15.93 0.00 0.00 2.66
492 493 4.874970 TCTCTAACGCGAAACCTAAAACT 58.125 39.130 15.93 0.00 0.00 2.66
493 494 5.403466 TCTTCTCTAACGCGAAACCTAAAAC 59.597 40.000 15.93 0.00 0.00 2.43
494 495 5.531634 TCTTCTCTAACGCGAAACCTAAAA 58.468 37.500 15.93 0.00 0.00 1.52
495 496 5.125100 TCTTCTCTAACGCGAAACCTAAA 57.875 39.130 15.93 0.00 0.00 1.85
496 497 4.771590 TCTTCTCTAACGCGAAACCTAA 57.228 40.909 15.93 0.00 0.00 2.69
497 498 4.771590 TTCTTCTCTAACGCGAAACCTA 57.228 40.909 15.93 0.00 0.00 3.08
498 499 3.655276 TTCTTCTCTAACGCGAAACCT 57.345 42.857 15.93 0.00 0.00 3.50
499 500 3.492011 TGTTTCTTCTCTAACGCGAAACC 59.508 43.478 15.93 0.00 41.46 3.27
500 501 4.443586 GTGTTTCTTCTCTAACGCGAAAC 58.556 43.478 15.93 10.26 42.11 2.78
501 502 4.703899 GTGTTTCTTCTCTAACGCGAAA 57.296 40.909 15.93 0.00 0.00 3.46
506 507 3.181530 CCATGCGTGTTTCTTCTCTAACG 60.182 47.826 4.96 0.00 0.00 3.18
507 508 3.746492 ACCATGCGTGTTTCTTCTCTAAC 59.254 43.478 4.96 0.00 0.00 2.34
508 509 3.745975 CACCATGCGTGTTTCTTCTCTAA 59.254 43.478 4.96 0.00 37.73 2.10
509 510 3.325870 CACCATGCGTGTTTCTTCTCTA 58.674 45.455 4.96 0.00 37.73 2.43
510 511 2.146342 CACCATGCGTGTTTCTTCTCT 58.854 47.619 4.96 0.00 37.73 3.10
511 512 1.197721 CCACCATGCGTGTTTCTTCTC 59.802 52.381 4.96 0.00 41.26 2.87
512 513 1.238439 CCACCATGCGTGTTTCTTCT 58.762 50.000 4.96 0.00 41.26 2.85
513 514 0.951558 ACCACCATGCGTGTTTCTTC 59.048 50.000 4.96 0.00 41.26 2.87
514 515 0.951558 GACCACCATGCGTGTTTCTT 59.048 50.000 4.96 0.00 41.26 2.52
515 516 0.179032 TGACCACCATGCGTGTTTCT 60.179 50.000 4.96 0.00 41.26 2.52
516 517 0.881118 ATGACCACCATGCGTGTTTC 59.119 50.000 4.96 8.81 41.26 2.78
517 518 1.327303 AATGACCACCATGCGTGTTT 58.673 45.000 4.96 0.00 41.26 2.83
518 519 1.327303 AAATGACCACCATGCGTGTT 58.673 45.000 4.96 0.00 41.26 3.32
519 520 1.000385 CAAAATGACCACCATGCGTGT 60.000 47.619 4.96 0.00 41.26 4.49
520 521 1.000385 ACAAAATGACCACCATGCGTG 60.000 47.619 0.00 0.00 42.62 5.34
521 522 1.269448 GACAAAATGACCACCATGCGT 59.731 47.619 0.00 0.00 35.24 5.24
522 523 1.269174 TGACAAAATGACCACCATGCG 59.731 47.619 0.00 0.00 35.24 4.73
523 524 2.035704 TGTGACAAAATGACCACCATGC 59.964 45.455 0.00 0.00 35.24 4.06
524 525 4.319139 TTGTGACAAAATGACCACCATG 57.681 40.909 0.00 0.00 35.24 3.66
525 526 4.800249 GCATTGTGACAAAATGACCACCAT 60.800 41.667 20.51 0.00 37.22 3.55
526 527 3.492309 GCATTGTGACAAAATGACCACCA 60.492 43.478 20.51 0.00 37.22 4.17
527 528 3.059166 GCATTGTGACAAAATGACCACC 58.941 45.455 20.51 0.55 37.22 4.61
528 529 3.981211 AGCATTGTGACAAAATGACCAC 58.019 40.909 20.51 4.40 37.22 4.16
529 530 3.635836 TGAGCATTGTGACAAAATGACCA 59.364 39.130 20.51 13.67 37.22 4.02
530 531 4.232221 CTGAGCATTGTGACAAAATGACC 58.768 43.478 20.51 11.58 37.22 4.02
531 532 4.863491 ACTGAGCATTGTGACAAAATGAC 58.137 39.130 20.51 13.55 37.22 3.06
647 648 2.834549 CAGTGAGGTGAGGTGGATAAGT 59.165 50.000 0.00 0.00 0.00 2.24
662 663 3.425577 TTGTTTTTCTGCTGCAGTGAG 57.574 42.857 27.24 11.81 32.61 3.51
720 721 6.436843 AGAATTTTATTTGTGCGAGTAGGG 57.563 37.500 0.00 0.00 0.00 3.53
747 748 7.605309 GGTATTTTCTTCTTCGGAACCTTAAGA 59.395 37.037 3.36 0.00 0.00 2.10
748 749 7.606839 AGGTATTTTCTTCTTCGGAACCTTAAG 59.393 37.037 0.00 0.00 0.00 1.85
752 753 5.500546 AGGTATTTTCTTCTTCGGAACCT 57.499 39.130 0.00 0.00 0.00 3.50
758 759 8.705048 AACTAAGCTAGGTATTTTCTTCTTCG 57.295 34.615 0.00 0.00 0.00 3.79
836 847 0.537371 AAAGACAACAAGGCGAGGGG 60.537 55.000 0.00 0.00 0.00 4.79
865 876 1.291109 TTTATGGAGCGGGGGAGAAA 58.709 50.000 0.00 0.00 0.00 2.52
954 974 1.580845 CCTTCTCGCTGCAAACCTGG 61.581 60.000 0.00 0.00 0.00 4.45
1095 1117 4.154347 GACCAGGAGGCCAGCTCG 62.154 72.222 5.01 0.00 39.06 5.03
1530 1552 2.106938 GTGCCGATGATCTCCGCA 59.893 61.111 0.00 0.00 36.03 5.69
1642 1664 4.976257 GAAAGAATTCTGTGGCCCGAAGG 61.976 52.174 9.17 0.00 39.11 3.46
1643 1665 1.826385 AAGAATTCTGTGGCCCGAAG 58.174 50.000 9.17 0.00 0.00 3.79
1644 1666 2.159382 GAAAGAATTCTGTGGCCCGAA 58.841 47.619 9.17 0.24 32.57 4.30
1645 1667 1.821216 GAAAGAATTCTGTGGCCCGA 58.179 50.000 9.17 0.00 32.57 5.14
1664 1686 7.178074 ACGAACAAGAAAACTTTACTTTCTCG 58.822 34.615 0.00 0.00 41.24 4.04
2175 2198 4.827284 TCCTCCTTTTTGTTCATTCCAGAC 59.173 41.667 0.00 0.00 0.00 3.51
2179 2202 7.610305 TGTACTATCCTCCTTTTTGTTCATTCC 59.390 37.037 0.00 0.00 0.00 3.01
2240 2265 3.067742 AGCATCATGGCAGCACTTATTTC 59.932 43.478 0.00 0.00 35.83 2.17
2269 2294 4.584325 TCTGCTGTTAAGGACAAAGCATTT 59.416 37.500 0.00 0.00 38.35 2.32
2270 2295 4.022849 GTCTGCTGTTAAGGACAAAGCATT 60.023 41.667 0.00 0.00 38.35 3.56
2271 2296 3.503748 GTCTGCTGTTAAGGACAAAGCAT 59.496 43.478 0.00 0.00 38.35 3.79
2273 2298 2.878406 TGTCTGCTGTTAAGGACAAAGC 59.122 45.455 0.00 0.00 37.93 3.51
2274 2299 6.428159 ACTTATGTCTGCTGTTAAGGACAAAG 59.572 38.462 0.00 0.00 41.14 2.77
2289 2547 6.792311 CGCCTACGGGAAGACTTATGTCTG 62.792 54.167 11.71 2.77 43.39 3.51
2321 2579 2.547218 CGCCAGTACAACTGTTACCACT 60.547 50.000 6.33 0.00 44.50 4.00
2324 2582 0.794473 GCGCCAGTACAACTGTTACC 59.206 55.000 0.00 0.00 44.50 2.85
2453 2713 5.303971 CATGGATGAGATGGGACTTAACTC 58.696 45.833 0.00 0.00 0.00 3.01
2507 2767 2.093306 TATCACACCCAAACAGCTCG 57.907 50.000 0.00 0.00 0.00 5.03
2642 2922 6.763610 GTGTAACTCTGAATTTAGCTAGCCAT 59.236 38.462 12.13 0.00 0.00 4.40
2707 2990 0.107508 ATGCCATCACCGGACAGAAG 60.108 55.000 9.46 0.00 0.00 2.85
2711 2994 2.589540 GGATGCCATCACCGGACA 59.410 61.111 9.46 0.00 0.00 4.02
2721 3004 1.745115 CTCGCGAAAAGGGATGCCA 60.745 57.895 11.33 0.00 41.18 4.92
2734 3027 1.517257 CTTCACTAGTGCCCTCGCG 60.517 63.158 18.45 0.00 38.08 5.87
2950 3247 0.246360 CCGCCCCTTTTGATTGAACC 59.754 55.000 0.00 0.00 0.00 3.62
3316 3954 4.208047 CGTGCAAGTGAATAGATAGTGCTC 59.792 45.833 0.00 0.00 0.00 4.26
3317 3955 4.115516 CGTGCAAGTGAATAGATAGTGCT 58.884 43.478 0.00 0.00 0.00 4.40
3328 3966 0.380378 GTTTGGAGCGTGCAAGTGAA 59.620 50.000 0.59 0.00 0.00 3.18
3330 3968 1.008538 GGTTTGGAGCGTGCAAGTG 60.009 57.895 0.59 0.00 0.00 3.16
3352 3995 6.466308 GGCAACTTAACATGAAAATGGAAC 57.534 37.500 0.00 0.00 0.00 3.62
3547 4198 2.424601 GCCATTGCTTCAGTCTTGCATA 59.575 45.455 0.00 0.00 36.55 3.14
3556 4207 2.753966 CGGGTCGCCATTGCTTCAG 61.754 63.158 0.00 0.00 34.43 3.02
3823 4499 5.128919 GCTTGGTGGATTGATGACTTAGAT 58.871 41.667 0.00 0.00 0.00 1.98
3926 4609 2.027285 TGAGGATTCACATCGGCAAAGA 60.027 45.455 0.00 0.00 31.38 2.52
3952 4635 4.953940 TCACCCGACATATGATCATTCA 57.046 40.909 14.65 0.00 36.00 2.57
3969 4652 1.237285 ACAAGAGTTGGCGCATCACC 61.237 55.000 10.83 0.00 34.12 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.