Multiple sequence alignment - TraesCS2D01G205800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G205800 chr2D 100.000 8120 0 0 1 8120 157884927 157893046 0 14995
1 TraesCS2D01G205800 chr2A 96.419 5194 83 31 2997 8120 167949927 167955087 0 8466
2 TraesCS2D01G205800 chr2A 92.751 3090 93 30 1 3000 167946835 167949883 0 4344
3 TraesCS2D01G205800 chr2B 95.750 5176 95 34 2997 8119 215201197 215206300 0 8224
4 TraesCS2D01G205800 chr2B 94.098 3050 89 30 1 3000 215198145 215201153 0 4551


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G205800 chr2D 157884927 157893046 8119 False 14995.0 14995 100.000 1 8120 1 chr2D.!!$F1 8119
1 TraesCS2D01G205800 chr2A 167946835 167955087 8252 False 6405.0 8466 94.585 1 8120 2 chr2A.!!$F1 8119
2 TraesCS2D01G205800 chr2B 215198145 215206300 8155 False 6387.5 8224 94.924 1 8119 2 chr2B.!!$F1 8118

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
880 985 0.535102 CTCTCTCGCTCTCTCCCTCC 60.535 65.000 0.00 0.0 0.00 4.30 F
2016 2123 0.698238 AGGTGCTATTTGGCCTGACA 59.302 50.000 3.32 0.0 0.00 3.58 F
2865 2982 0.248580 CATGTGTGTGTGTGTGTGGC 60.249 55.000 0.00 0.0 0.00 5.01 F
3167 3378 1.691976 TCTTTTGCTCCGACTTCAGGA 59.308 47.619 0.00 0.0 36.20 3.86 F
3740 3951 1.770658 CCTATGGACATCAAGCCAGGA 59.229 52.381 0.00 0.0 37.64 3.86 F
4579 4790 2.098614 TGAACTTGAGCTTTGCCAACA 58.901 42.857 0.00 0.0 0.00 3.33 F
5777 6006 0.315886 CAATTCCAGCAGCAGCAACA 59.684 50.000 3.17 0.0 45.49 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2162 2269 0.392998 ATTTACGAGCTGCCCACCTG 60.393 55.000 0.0 0.00 0.00 4.00 R
3616 3827 0.035630 CCTTCAGGGAGCAAGAGTGG 60.036 60.000 0.0 0.00 37.23 4.00 R
4552 4763 0.962356 AAGCTCAAGTTCATGGCCGG 60.962 55.000 0.0 0.00 0.00 6.13 R
5127 5347 1.408683 GGCTGCTGGTGGTGATCATTA 60.409 52.381 0.0 0.00 0.00 1.90 R
5169 5389 3.673902 TGAAGCAAGATCAATCCGAACA 58.326 40.909 0.0 0.00 0.00 3.18 R
6300 6565 1.856265 GCGAACCAGAAGCAACAGGG 61.856 60.000 0.0 0.00 0.00 4.45 R
7247 7518 0.464013 ATCATCCTCCTCGTCGACGT 60.464 55.000 34.4 13.39 40.80 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
321 360 3.332385 GGTGGTCCCCGGGCTAAA 61.332 66.667 17.73 0.00 0.00 1.85
322 361 2.271173 GTGGTCCCCGGGCTAAAG 59.729 66.667 17.73 0.00 0.00 1.85
392 452 6.538021 TGCGTGGAGTGTTAAGTTTTTACTAA 59.462 34.615 0.00 0.00 0.00 2.24
458 528 1.691219 CACCCACCCACCTGCTATT 59.309 57.895 0.00 0.00 0.00 1.73
835 924 1.681538 GGAGGAGATACTCGTGAGCA 58.318 55.000 0.00 0.00 38.39 4.26
866 971 4.406763 AAGGAGGGCGGGCTCTCT 62.407 66.667 19.19 3.90 42.89 3.10
874 979 2.515991 CGGGCTCTCTCGCTCTCT 60.516 66.667 0.00 0.00 0.00 3.10
875 980 2.542907 CGGGCTCTCTCGCTCTCTC 61.543 68.421 0.00 0.00 0.00 3.20
876 981 2.193536 GGGCTCTCTCGCTCTCTCC 61.194 68.421 0.00 0.00 0.00 3.71
877 982 2.193536 GGCTCTCTCGCTCTCTCCC 61.194 68.421 0.00 0.00 0.00 4.30
878 983 1.152963 GCTCTCTCGCTCTCTCCCT 60.153 63.158 0.00 0.00 0.00 4.20
879 984 1.166531 GCTCTCTCGCTCTCTCCCTC 61.167 65.000 0.00 0.00 0.00 4.30
880 985 0.535102 CTCTCTCGCTCTCTCCCTCC 60.535 65.000 0.00 0.00 0.00 4.30
881 986 1.225983 CTCTCGCTCTCTCCCTCCA 59.774 63.158 0.00 0.00 0.00 3.86
1345 1450 2.030412 CGCACCACCACAGCAGTA 59.970 61.111 0.00 0.00 0.00 2.74
1346 1451 2.029288 CGCACCACCACAGCAGTAG 61.029 63.158 0.00 0.00 0.00 2.57
1398 1503 4.198224 AACCACCACCACCACGGG 62.198 66.667 0.00 0.00 40.22 5.28
1538 1643 3.242252 ACCGCAAAACAAGCAAATTTTCG 60.242 39.130 0.00 0.00 0.00 3.46
1540 1645 3.543852 CGCAAAACAAGCAAATTTTCGCT 60.544 39.130 0.00 0.00 41.20 4.93
1583 1688 2.240162 AATCTCACCGGCGTTCCTCC 62.240 60.000 6.01 0.00 0.00 4.30
1792 1897 1.353694 CCATCTCCCCTCATGATTCCC 59.646 57.143 0.00 0.00 0.00 3.97
1825 1932 5.208121 CCTTACTGATTTCCCTCTCTCTCT 58.792 45.833 0.00 0.00 0.00 3.10
1826 1933 5.301805 CCTTACTGATTTCCCTCTCTCTCTC 59.698 48.000 0.00 0.00 0.00 3.20
2016 2123 0.698238 AGGTGCTATTTGGCCTGACA 59.302 50.000 3.32 0.00 0.00 3.58
2070 2177 3.842925 GAACCACAAGCCGGAGCCA 62.843 63.158 5.05 0.00 41.25 4.75
2162 2269 1.840737 TCAGCCTCTCTCACCACTAC 58.159 55.000 0.00 0.00 0.00 2.73
2178 2285 1.304630 TACAGGTGGGCAGCTCGTA 60.305 57.895 0.00 0.00 36.98 3.43
2185 2292 2.029380 GGTGGGCAGCTCGTAAATTTTT 60.029 45.455 0.00 0.00 0.00 1.94
2192 2299 5.743872 GGCAGCTCGTAAATTTTTATCTTGG 59.256 40.000 0.00 0.00 0.00 3.61
2238 2346 6.887626 TGGTTTTGTGGGTCTAATAAACTC 57.112 37.500 0.00 0.00 0.00 3.01
2239 2347 6.607019 TGGTTTTGTGGGTCTAATAAACTCT 58.393 36.000 0.00 0.00 0.00 3.24
2243 2351 5.578005 TGTGGGTCTAATAAACTCTCTCG 57.422 43.478 0.00 0.00 0.00 4.04
2305 2413 2.620115 TCAAGTACGACAACGAGAACCT 59.380 45.455 0.00 0.00 42.66 3.50
2360 2468 2.757077 CCCTCAAGGCCGGAAGTT 59.243 61.111 5.05 0.00 0.00 2.66
2838 2955 3.755378 GCATTGATCTCATGGTGGGTATC 59.245 47.826 7.36 0.00 0.00 2.24
2849 2966 3.355378 TGGTGGGTATCTGCTTTTCATG 58.645 45.455 0.00 0.00 0.00 3.07
2853 2970 3.758023 TGGGTATCTGCTTTTCATGTGTG 59.242 43.478 0.00 0.00 0.00 3.82
2865 2982 0.248580 CATGTGTGTGTGTGTGTGGC 60.249 55.000 0.00 0.00 0.00 5.01
3160 3371 3.498397 TCTTGTTCATCTTTTGCTCCGAC 59.502 43.478 0.00 0.00 0.00 4.79
3167 3378 1.691976 TCTTTTGCTCCGACTTCAGGA 59.308 47.619 0.00 0.00 36.20 3.86
3269 3480 3.849951 GATTCCGGCGGAGGAGCA 61.850 66.667 29.30 14.72 41.98 4.26
3434 3645 7.009568 AGCATGAGAAATCACGTAAGAATTC 57.990 36.000 0.00 0.00 43.62 2.17
3616 3827 3.250040 ACTGCTGTTCGATGTTTTACACC 59.750 43.478 0.00 0.00 0.00 4.16
3740 3951 1.770658 CCTATGGACATCAAGCCAGGA 59.229 52.381 0.00 0.00 37.64 3.86
3936 4147 2.286833 CCAATACCACCAGCGAATTACG 59.713 50.000 0.00 0.00 45.66 3.18
4059 4270 4.980805 GGCGTCGTTCCACCTGCA 62.981 66.667 0.00 0.00 0.00 4.41
4192 4403 5.310182 GAGCCTCTCCAAGGATAAAGCGT 62.310 52.174 0.00 0.00 46.31 5.07
4316 4527 5.651172 TTGTCGTGGATTTATGCTATTCG 57.349 39.130 0.00 0.00 0.00 3.34
4579 4790 2.098614 TGAACTTGAGCTTTGCCAACA 58.901 42.857 0.00 0.00 0.00 3.33
4961 5181 2.500098 GTCCTGTTCTACTACATGGCCA 59.500 50.000 8.56 8.56 0.00 5.36
5001 5221 2.636893 AGACAAGACTCTGCAAGATGGT 59.363 45.455 3.37 0.00 45.62 3.55
5127 5347 5.184711 GGCAATCAGAGTGAGAAGAAATCT 58.815 41.667 0.94 0.00 42.61 2.40
5169 5389 4.640690 ACCAGTCGAGGCCAGGGT 62.641 66.667 5.01 0.00 0.00 4.34
5175 5395 4.760047 CGAGGCCAGGGTGTTCGG 62.760 72.222 5.01 0.00 0.00 4.30
5313 5533 1.078214 CCATCAAGAAGCAGGCCGA 60.078 57.895 0.00 0.00 0.00 5.54
5429 5649 2.245546 TGGCTGGGGATTCATCTTCAAT 59.754 45.455 0.00 0.00 0.00 2.57
5745 5974 0.540133 TGCACCAACACCATCAGCAT 60.540 50.000 0.00 0.00 0.00 3.79
5777 6006 0.315886 CAATTCCAGCAGCAGCAACA 59.684 50.000 3.17 0.00 45.49 3.33
5778 6007 0.601558 AATTCCAGCAGCAGCAACAG 59.398 50.000 3.17 0.00 45.49 3.16
5781 6010 2.255554 CAGCAGCAGCAACAGCAG 59.744 61.111 3.17 0.00 45.49 4.24
5827 6092 2.979197 CTCCAGCAGCAGCAGCAAC 61.979 63.158 12.92 0.00 45.49 4.17
5828 6093 3.292159 CCAGCAGCAGCAGCAACA 61.292 61.111 12.92 0.00 45.49 3.33
5829 6094 2.255554 CAGCAGCAGCAGCAACAG 59.744 61.111 12.92 0.00 45.49 3.16
6300 6565 4.636249 ACCTATCTCGATCTTCAAATGCC 58.364 43.478 0.00 0.00 0.00 4.40
6435 6700 2.035066 ACAACATGCAGCAAAGAACTCC 59.965 45.455 0.00 0.00 0.00 3.85
7081 7352 7.148407 CCACCATATAACTTGACTCAGTTGTTC 60.148 40.741 0.00 0.00 37.57 3.18
7468 7739 0.983905 GAACTTCTCCCCTCCCCTCC 60.984 65.000 0.00 0.00 0.00 4.30
7469 7740 1.761780 AACTTCTCCCCTCCCCTCCA 61.762 60.000 0.00 0.00 0.00 3.86
7470 7741 1.082954 CTTCTCCCCTCCCCTCCAA 59.917 63.158 0.00 0.00 0.00 3.53
7471 7742 1.229853 TTCTCCCCTCCCCTCCAAC 60.230 63.158 0.00 0.00 0.00 3.77
7568 7849 2.978156 AGAATGCAGGTCAAGGGAAA 57.022 45.000 0.00 0.00 0.00 3.13
7581 7862 5.395214 GGTCAAGGGAAAACTTTTGTGATGT 60.395 40.000 0.00 0.00 0.00 3.06
7706 7992 0.332632 TTGGGGCAGAGAGGGAAATG 59.667 55.000 0.00 0.00 0.00 2.32
7752 8044 8.947115 AGTAGTATGTTGGATTGTTTTAGAAGC 58.053 33.333 0.00 0.00 0.00 3.86
7753 8045 7.759489 AGTATGTTGGATTGTTTTAGAAGCA 57.241 32.000 0.00 0.00 0.00 3.91
7819 8118 5.490159 TGTTGCATAGCATAGCATAGCATA 58.510 37.500 0.00 0.00 40.94 3.14
7820 8119 5.583457 TGTTGCATAGCATAGCATAGCATAG 59.417 40.000 0.00 0.00 40.94 2.23
7821 8120 4.124970 TGCATAGCATAGCATAGCATAGC 58.875 43.478 0.00 0.00 35.51 2.97
7822 8121 4.124970 GCATAGCATAGCATAGCATAGCA 58.875 43.478 0.00 0.00 0.00 3.49
7823 8122 4.755629 GCATAGCATAGCATAGCATAGCAT 59.244 41.667 0.00 0.00 0.00 3.79
7824 8123 5.930569 GCATAGCATAGCATAGCATAGCATA 59.069 40.000 0.00 0.00 0.00 3.14
7825 8124 6.594547 GCATAGCATAGCATAGCATAGCATAT 59.405 38.462 0.00 0.00 0.00 1.78
7826 8125 7.763071 GCATAGCATAGCATAGCATAGCATATA 59.237 37.037 0.00 0.00 0.00 0.86
7827 8126 9.303537 CATAGCATAGCATAGCATAGCATATAG 57.696 37.037 0.00 0.00 0.00 1.31
7828 8127 6.164876 AGCATAGCATAGCATAGCATATAGC 58.835 40.000 0.00 0.00 46.19 2.97
7858 8157 1.593265 CATGACCTGGCTTTTGGGC 59.407 57.895 0.00 0.00 41.27 5.36
7880 8179 3.541516 CGTGTGCGTTGTAATTAGCTAGC 60.542 47.826 6.62 6.62 0.00 3.42
7919 8221 2.091541 GAATCAATCAAGGCGGTGGAA 58.908 47.619 0.00 0.00 0.00 3.53
7920 8222 1.755179 ATCAATCAAGGCGGTGGAAG 58.245 50.000 0.00 0.00 0.00 3.46
7921 8223 0.400213 TCAATCAAGGCGGTGGAAGT 59.600 50.000 0.00 0.00 0.00 3.01
7929 8231 2.046285 GCGGTGGAAGTTGGATGGG 61.046 63.158 0.00 0.00 0.00 4.00
8020 8324 2.159366 ACTCATCCGAAAGTGCTACTCG 60.159 50.000 0.00 0.00 0.00 4.18
8067 8383 1.067213 CCATTTGTTAACTTGCCCGGG 60.067 52.381 19.09 19.09 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.025262 GCACTACTGGCCTACTTCTACT 58.975 50.000 3.32 0.00 0.00 2.57
16 18 0.034896 AACCTTCACCGCACTACTGG 59.965 55.000 0.00 0.00 0.00 4.00
334 376 4.033009 AGCAAGGAATAAAGAAATGGGGG 58.967 43.478 0.00 0.00 0.00 5.40
336 378 9.671279 AAATAAAGCAAGGAATAAAGAAATGGG 57.329 29.630 0.00 0.00 0.00 4.00
835 924 0.324830 CTCCTTCTCCTTCCCCTCGT 60.325 60.000 0.00 0.00 0.00 4.18
866 971 0.467106 CAGATGGAGGGAGAGAGCGA 60.467 60.000 0.00 0.00 0.00 4.93
868 973 1.747774 GCAGATGGAGGGAGAGAGC 59.252 63.158 0.00 0.00 0.00 4.09
869 974 0.105555 AGGCAGATGGAGGGAGAGAG 60.106 60.000 0.00 0.00 0.00 3.20
870 975 0.341258 AAGGCAGATGGAGGGAGAGA 59.659 55.000 0.00 0.00 0.00 3.10
871 976 0.469070 CAAGGCAGATGGAGGGAGAG 59.531 60.000 0.00 0.00 0.00 3.20
872 977 0.252881 ACAAGGCAGATGGAGGGAGA 60.253 55.000 0.00 0.00 0.00 3.71
873 978 0.622665 AACAAGGCAGATGGAGGGAG 59.377 55.000 0.00 0.00 0.00 4.30
874 979 0.329261 CAACAAGGCAGATGGAGGGA 59.671 55.000 0.00 0.00 0.00 4.20
875 980 0.329261 TCAACAAGGCAGATGGAGGG 59.671 55.000 0.00 0.00 0.00 4.30
876 981 1.681166 CCTCAACAAGGCAGATGGAGG 60.681 57.143 0.00 0.00 38.67 4.30
877 982 1.747709 CCTCAACAAGGCAGATGGAG 58.252 55.000 0.00 0.00 38.67 3.86
878 983 3.963733 CCTCAACAAGGCAGATGGA 57.036 52.632 0.00 0.00 38.67 3.41
957 1062 1.238625 CGATCTCCCCTCCTAGTCGC 61.239 65.000 0.00 0.00 0.00 5.19
1538 1643 0.952984 ACAGAAGCGGCAAGAAGAGC 60.953 55.000 1.45 0.00 0.00 4.09
1540 1645 1.873591 GAAACAGAAGCGGCAAGAAGA 59.126 47.619 1.45 0.00 0.00 2.87
1583 1688 1.464997 GGTAGAAGCTGCGGAAAACAG 59.535 52.381 0.00 0.00 38.22 3.16
1656 1761 4.175489 GCGAGCCGTCTACAGCGA 62.175 66.667 0.00 0.00 0.00 4.93
1792 1897 3.356529 AATCAGTAAGGGCAGGAGTTG 57.643 47.619 0.00 0.00 0.00 3.16
1825 1932 0.599204 GTTTTCTGCGAGACACCGGA 60.599 55.000 9.46 0.00 0.00 5.14
1826 1933 0.878523 TGTTTTCTGCGAGACACCGG 60.879 55.000 0.00 0.00 0.00 5.28
2051 2158 3.423154 GCTCCGGCTTGTGGTTCG 61.423 66.667 0.00 0.00 35.22 3.95
2162 2269 0.392998 ATTTACGAGCTGCCCACCTG 60.393 55.000 0.00 0.00 0.00 4.00
2238 2346 1.500844 CTGGCAAAAGCAGCGAGAG 59.499 57.895 0.00 0.00 39.79 3.20
2239 2347 2.620112 GCTGGCAAAAGCAGCGAGA 61.620 57.895 1.36 0.00 43.01 4.04
2243 2351 4.383861 GGGGCTGGCAAAAGCAGC 62.384 66.667 2.88 0.00 45.43 5.25
2460 2577 3.003173 CTCTGGCTCCCGGGTTGA 61.003 66.667 22.86 11.41 0.00 3.18
2462 2579 2.203938 TTCTCTGGCTCCCGGGTT 60.204 61.111 22.86 0.00 0.00 4.11
2838 2955 3.110358 CACACACACACATGAAAAGCAG 58.890 45.455 0.00 0.00 0.00 4.24
2849 2966 1.024046 TCAGCCACACACACACACAC 61.024 55.000 0.00 0.00 0.00 3.82
2853 2970 1.269206 CCAATTCAGCCACACACACAC 60.269 52.381 0.00 0.00 0.00 3.82
2865 2982 3.855689 AATTCCGCAAGACCAATTCAG 57.144 42.857 0.00 0.00 43.02 3.02
2974 3091 2.555757 CAAGCACAAGGGGAGAGAAAAG 59.444 50.000 0.00 0.00 0.00 2.27
3160 3371 5.585445 CAGAATTTCCTCTCACATCCTGAAG 59.415 44.000 0.00 0.00 0.00 3.02
3167 3378 8.469309 TTTCTTTTCAGAATTTCCTCTCACAT 57.531 30.769 0.00 0.00 38.89 3.21
3269 3480 2.305343 AGAGTGAGCTTCTTTGGAGCAT 59.695 45.455 0.41 0.00 0.00 3.79
3434 3645 2.499303 AATGGGGAAGAACCAGGCGG 62.499 60.000 0.00 0.00 42.15 6.13
3616 3827 0.035630 CCTTCAGGGAGCAAGAGTGG 60.036 60.000 0.00 0.00 37.23 4.00
3740 3951 4.327680 GAACCTGTAATCCAGCAGAAGTT 58.672 43.478 0.00 0.00 40.06 2.66
4192 4403 1.002990 CACTGGCACTGCTGGATGA 60.003 57.895 0.00 0.00 0.00 2.92
4359 4570 2.927028 AGGGTGCACGGGAAATTATAC 58.073 47.619 11.45 0.00 0.00 1.47
4552 4763 0.962356 AAGCTCAAGTTCATGGCCGG 60.962 55.000 0.00 0.00 0.00 6.13
4693 4904 2.723209 GTTGAAAAACGGTACACCTGC 58.277 47.619 0.00 0.00 0.00 4.85
4961 5181 2.711922 GGATCCTGTCGGTGAGCGT 61.712 63.158 3.84 0.00 0.00 5.07
5127 5347 1.408683 GGCTGCTGGTGGTGATCATTA 60.409 52.381 0.00 0.00 0.00 1.90
5169 5389 3.673902 TGAAGCAAGATCAATCCGAACA 58.326 40.909 0.00 0.00 0.00 3.18
5175 5395 4.023878 GGCTGAGATGAAGCAAGATCAATC 60.024 45.833 0.00 0.00 42.69 2.67
5745 5974 2.490509 CTGGAATTGTTGCTGCATCTGA 59.509 45.455 1.84 0.00 0.00 3.27
6300 6565 1.856265 GCGAACCAGAAGCAACAGGG 61.856 60.000 0.00 0.00 0.00 4.45
6435 6700 3.245052 ACTTGGATCCAGAAGTTGAAGGG 60.245 47.826 15.53 0.00 0.00 3.95
6729 6994 1.736681 GAACCAGAGACAGCATTCTGC 59.263 52.381 0.00 0.00 44.10 4.26
7081 7352 4.758165 ACACAAGGGTTTTATGTTAGTCGG 59.242 41.667 0.00 0.00 0.00 4.79
7247 7518 0.464013 ATCATCCTCCTCGTCGACGT 60.464 55.000 34.40 13.39 40.80 4.34
7468 7739 1.299562 CCAGAGCAGAGCAGCAGTTG 61.300 60.000 0.00 0.00 36.85 3.16
7469 7740 1.003597 CCAGAGCAGAGCAGCAGTT 60.004 57.895 0.00 0.00 36.85 3.16
7470 7741 2.169937 GACCAGAGCAGAGCAGCAGT 62.170 60.000 0.00 0.00 36.85 4.40
7471 7742 1.448189 GACCAGAGCAGAGCAGCAG 60.448 63.158 0.00 0.00 36.85 4.24
7568 7849 3.382546 AGAGCAGCAACATCACAAAAGTT 59.617 39.130 0.00 0.00 0.00 2.66
7581 7862 0.607489 GAGGAAGGCAAGAGCAGCAA 60.607 55.000 0.00 0.00 44.61 3.91
7706 7992 7.785033 ACTACTACTACTACTCCTTGAGAGAC 58.215 42.308 0.00 0.00 46.50 3.36
7751 8043 2.270986 CCTCAGCCCCAGTTGTTGC 61.271 63.158 0.00 0.00 0.00 4.17
7752 8044 2.270986 GCCTCAGCCCCAGTTGTTG 61.271 63.158 0.00 0.00 0.00 3.33
7753 8045 2.116125 GCCTCAGCCCCAGTTGTT 59.884 61.111 0.00 0.00 0.00 2.83
7819 8118 5.494390 TGGTCATTCTCATGCTATATGCT 57.506 39.130 0.00 0.00 43.37 3.79
7820 8119 5.878669 TCATGGTCATTCTCATGCTATATGC 59.121 40.000 0.00 0.00 40.20 3.14
7821 8120 6.315642 GGTCATGGTCATTCTCATGCTATATG 59.684 42.308 0.00 0.00 40.20 1.78
7822 8121 6.215023 AGGTCATGGTCATTCTCATGCTATAT 59.785 38.462 0.00 0.00 40.20 0.86
7823 8122 5.545335 AGGTCATGGTCATTCTCATGCTATA 59.455 40.000 0.00 0.00 40.20 1.31
7824 8123 4.350225 AGGTCATGGTCATTCTCATGCTAT 59.650 41.667 0.00 0.00 40.20 2.97
7825 8124 3.713248 AGGTCATGGTCATTCTCATGCTA 59.287 43.478 0.00 0.00 40.20 3.49
7826 8125 2.508716 AGGTCATGGTCATTCTCATGCT 59.491 45.455 0.00 0.00 40.20 3.79
7827 8126 2.617308 CAGGTCATGGTCATTCTCATGC 59.383 50.000 0.00 0.00 40.20 4.06
7828 8127 3.211865 CCAGGTCATGGTCATTCTCATG 58.788 50.000 0.00 0.00 44.91 3.07
7829 8128 3.572632 CCAGGTCATGGTCATTCTCAT 57.427 47.619 0.00 0.00 44.91 2.90
7849 8148 3.766496 AACGCACACGCCCAAAAGC 62.766 57.895 0.00 0.00 45.53 3.51
7880 8179 8.498054 TTGATTCATTTCTTCTACAAGGCTAG 57.502 34.615 0.00 0.00 0.00 3.42
7919 8221 4.230502 ACAAGATTATCCACCCATCCAACT 59.769 41.667 0.00 0.00 0.00 3.16
7920 8222 4.536765 ACAAGATTATCCACCCATCCAAC 58.463 43.478 0.00 0.00 0.00 3.77
7921 8223 4.879295 ACAAGATTATCCACCCATCCAA 57.121 40.909 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.